Citrus Sinensis ID: 022605

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MENLTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTSGGKHK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHcccccHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccHHHHHHcccccccccHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHcccccEEEEEEEccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MENLTAQLKRGisrqfstgsLRRSLTRQmsrqssfdprrnnmrfsfgrqssldpirrspvqdeltvpenLDSTMQLLFMACRGDVKGVEDLlnegsdvnsidldgrtaLHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKArgakvpktkrtpmtvanprevpeyelnpleLQVRKadgitkgsYQVAKWNGTKVWVKILdkeshkdperiNAFTHELTIVEkarhpnvvQFVGAVTQNIPMMIVLEYHakvsmpitpfltlsfhkqthtsggkhk
Flexible Loop (DISEMBL)
menltaqlkrgisrqfstgslrrsltrqmsrqssfdprrnnmrfsfgrqssldpirrspvqDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKkanidardrwgstaaadakyygnVEVYNILkargakvpktkrtpmtvanprevpeyelnpLELQVRKADGitkgsyqvakwngtKVWVKILDkeshkdperINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHkqthtsggkhk
Low Complexity Region (SEG)
MENLTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTSGGKHK
Disordered region (IsUnstruct)
***********************************************************************STMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA********************YELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFH***********
Disordered Region (DISOPRED)
**N****LKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFH***********
Disordered Region (DISEMBL)
********KRGISRQFSTGS***************DPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFH***********
Disordered Region (DISPRO)
**********GISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHT******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENLTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTSGGKHK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
O94925	669	Glutaminase kidney isofor	yes	no	0.340	0.149	0.407	2e-12
D3Z7P3	674	Glutaminase kidney isofor	yes	no	0.309	0.135	0.423	3e-12
P13264	674	Glutaminase kidney isofor	yes	no	0.309	0.135	0.423	3e-12
Q9UI32	602	Glutaminase liver isoform	no	no	0.295	0.144	0.420	1e-11
Q505D1	1053	Serine/threonine-protein	no	no	0.503	0.140	0.365	2e-11
Q6F6B3	1849	Protein TANC1 OS=Rattus n	no	no	0.336	0.053	0.417	3e-11
Q571F8	602	Glutaminase liver isoform	no	no	0.295	0.144	0.409	3e-11
O15084	1053	Serine/threonine-protein	no	no	0.452	0.126	0.392	3e-11
Q9ULJ7	1429	Ankyrin repeat domain-con	no	no	0.340	0.069	0.416	9e-11
P28492	602	Glutaminase liver isoform	no	no	0.295	0.144	0.397	1e-10

>sp|O94925|GLSK_HUMAN Glutaminase kidney isoform, mitochondrial OS=Homo sapiens GN=GLS PE=1 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 59/108 (54%), Gaps = 8/108 (7%)

Query: 52  LDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHI 111
           LDP R    Q        + S + LLF A  GDV  +        D+   D D RTALH+
Sbjct: 540 LDPRREGGDQ-------RVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHV 592

Query: 112 AACEGHVEVVKLLL-SKKANIDARDRWGSTAAADAKYYGNVEVYNILK 158
           AA EGHVEVVK LL + K N   +DRW +T   +A ++G+ +V+ IL+
Sbjct: 593 AAAEGHVEVVKFLLEACKVNPFPKDRWNNTPMDEALHFGHHDVFKILQ 640

Catalyzes the first reaction in the primary pathway for the renal catabolism of glutamine. Plays a role in maintaining acid-base homeostasis. Regulates the levels of the neurotransmitter glutamate in the brain. Isoform 2 lacks catalytic activity.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 2

>sp|D3Z7P3|GLSK_MOUSE Glutaminase kidney isoform, mitochondrial OS=Mus musculus GN=Gls PE=1 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 68  ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLL-S 126
           + + S + LLF A  GDV  +        D+   D D RTALH+AA EGHVEVVK LL +
Sbjct: 554 QRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGHVEVVKFLLEA 613

Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILK 158
            K N   +DRW +T   +A ++G+ +V+ IL+
Sbjct: 614 CKVNPFPKDRWNNTPMDEALHFGHHDVFKILQ 645

Catalyzes the first reaction in the primary pathway for the renal catabolism of glutamine. Plays a role in maintaining acid-base homeostasis. Regulates the levels of the neurotransmitter glutamate in the brain.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|P13264|GLSK_RAT Glutaminase kidney isoform, mitochondrial OS=Rattus norvegicus GN=Gls PE=1 SV=2

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 68  ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLL-S 126
           + + S + LLF A  GDV  +        D+   D D RTALH+AA EGHVEVVK LL +
Sbjct: 554 QRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGHVEVVKFLLEA 613

Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILK 158
            K N   +DRW +T   +A ++G+ +V+ IL+
Sbjct: 614 CKVNPFPKDRWNNTPMDEALHFGHHDVFKILQ 645

Catalyzes the first reaction in the primary pathway for the renal catabolism of glutamine. Plays a role in maintaining acid-base homeostasis. Regulates the levels of the neurotransmitter glutamate in the brain.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9UI32|GLSL_HUMAN Glutaminase liver isoform, mitochondrial OS=Homo sapiens GN=GLS2 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 72  STMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLL-SKKAN 130
           + + LLF A  GDV  +        D+   D D RTALH+AA EGH+EVVK L+ + K N
Sbjct: 486 TVVNLLFAAYSGDVSALRRFALSAMDMEQKDYDSRTALHVAAAEGHIEVVKFLIEACKVN 545

Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
             A+DRWG+    DA  + ++EV  +L+
Sbjct: 546 PFAKDRWGNIPLDDAVQFNHLEVVKLLQ 573

Plays an important role in the regulation of glutamine catabolism. Promotes mitochondrial respiration and increases ATP generation in cells by catalyzing the synthesis of glutamate and alpha-ketoglutarate. Increases cellular anti-oxidant function via NADH and glutathione production. May play a role in preventing tumor proliferation.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 83/156 (53%), Gaps = 8/156 (5%)

Query: 85  VKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD 144
           VK  E L+   S+VN  D  GRTALH AA  GH E+VKLLLS+ ANI+A D+    A   
Sbjct: 120 VKCAESLVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHW 179

Query: 145 AKYYGNVEVYNILKARGAKVP---KTKRTPMTVANPR---EVPEYELNPLELQVRKADGI 198
           A Y G++EV  +L + GA+V    K   TP+  A       V +Y L+ L + + + +  
Sbjct: 180 AAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLD-LGVDMNEPNAY 238

Query: 199 TKGSYQVAKWNGTKVWV-KILDKESHKDPERINAFT 233
                 VA +NG  V V +++D  ++ + +    FT
Sbjct: 239 GNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFT 274

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Mus musculus (taxid: 10090)

>sp|Q6F6B3|TANC1_RAT Protein TANC1 OS=Rattus norvegicus GN=Tanc1 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 4/103 (3%)

Query: 77   LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
            LF A R G  + V+ LL+ G DVN  D  GRT L +AACEGH+  V+ LLSK A + + D
Sbjct: 1106 LFCAARQGHWQVVQLLLDRGCDVNPNDKQGRTPLMVAACEGHLSTVEFLLSKGAALSSLD 1165

Query: 136  RWGSTAAADAKYYGNVEVYNILKARGAKVPKTK---RTPMTVA 175
            + G +A + A   G+  V   L   GA++ +T    RTP+ +A
Sbjct: 1166 KEGLSALSWACLKGHRAVVQYLVEEGAEIDQTDKNGRTPLDLA 1208

May be a scaffold component in the postsynaptic density.

Rattus norvegicus (taxid: 10116)

>sp|Q571F8|GLSL_MOUSE Glutaminase liver isoform, mitochondrial OS=Mus musculus GN=Gls2 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 72  STMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLL-SKKAN 130
           + + LLF A  GDV  +        D+   D D RTALH+AA EGH+EVVK L+ + K N
Sbjct: 486 TVVNLLFAAYSGDVSALRRFALSAMDMEQKDYDSRTALHVAAAEGHIEVVKFLIEACKVN 545

Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
              +DRWG+    DA  + ++EV  +L+
Sbjct: 546 PFVKDRWGNIPLDDAVQFNHLEVVKLLQ 573

Plays an important role in the regulation of glutamine catabolism. Promotes mitochondrial respiration and increases ATP generation in cells by catalyzing the synthesis of glutamate and alpha-ketoglutarate. Increases cellular anti-oxidant function via NADH and glutathione production.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|O15084|ANR28_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 74/140 (52%), Gaps = 7/140 (5%)

Query: 85  VKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD 144
           VK  E L+   S+VN  D  GRTALH AA  GH E+VKLLLS+ ANI+A D+    A   
Sbjct: 120 VKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHW 179

Query: 145 AKYYGNVEVYNILKARGAKVP---KTKRTPMTVANPR---EVPEYELNPLELQVRKADGI 198
           A Y G++EV  +L + GA+V    K   TP+  A       V +Y L+ L + + + +  
Sbjct: 180 AAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLD-LGVDMNEPNAY 238

Query: 199 TKGSYQVAKWNGTKVWVKIL 218
                 VA +NG  V V  L
Sbjct: 239 GNTPLHVACYNGQDVVVNEL 258

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Homo sapiens (taxid: 9606)

>sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4

 Score = 67.8 bits (164), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 8/108 (7%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAA-C----EGHVEVVKLLLSKKAN 130
           L+  A  G  + VE LL+ G++VN  D+DGRTAL +AA C    +GH  VV LL+ + A 
Sbjct: 681 LIAAAYMGHREIVEHLLDHGAEVNHEDVDGRTALSVAALCVPASKGHASVVSLLIDRGAE 740

Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK---RTPMTVA 175
           +D  D+ G T    A Y G+V+V ++L   GA V  T    RTP+  A
Sbjct: 741 VDHCDKDGMTPLLVAAYEGHVDVVDLLLEGGADVDHTDNNGRTPLLAA 788

Homo sapiens (taxid: 9606)

>sp|P28492|GLSL_RAT Glutaminase liver isoform, mitochondrial OS=Rattus norvegicus GN=Gls2 PE=2 SV=3

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 72  STMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLL-SKKAN 130
           + + LLF A  GDV  +        D+   D D RTALH+AA EGH++VVK L+ + K N
Sbjct: 486 TVVNLLFAAYSGDVSALRRFALSAVDMEQKDYDSRTALHVAAAEGHIDVVKFLIEACKVN 545

Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
              +DRWG+    DA  + ++EV  +L+
Sbjct: 546 PFVKDRWGNIPLDDAVQFNHLEVVKLLQ 573

Plays an important role in the regulation of glutamine catabolism. Promotes mitochondrial respiration and increases ATP generation in cells by catalyzing the synthesis of glutamate and alpha-ketoglutarate. Increases cellular anti-oxidant function via NADH and glutathione production.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
225434181	472	PREDICTED: dual specificity protein kina	0.904	0.563	0.857	1e-134
147802196	495	hypothetical protein VITISV_010336 [Viti	0.904	0.537	0.857	1e-134
18700701	477	ankyrin-kinase [Medicago truncatula]	0.914	0.563	0.842	1e-134
255577895	482	ankyrin-kinase, putative [Ricinus commun	0.914	0.558	0.841	1e-134
356512588	474	PREDICTED: serine/threonine-protein kina	0.914	0.567	0.833	1e-133
449438147	473	PREDICTED: serine/threonine-protein kina	0.914	0.568	0.829	1e-133
449520086	473	PREDICTED: serine/threonine-protein kina	0.914	0.568	0.829	1e-133
356525359	475	PREDICTED: serine/threonine-protein kina	0.914	0.566	0.830	1e-132
297828101	479	hypothetical protein ARALYDRAFT_903788 [	0.931	0.572	0.796	1e-130
42569902	479	Integrin-linked protein kinase-like prot	0.931	0.572	0.792	1e-130

>gi|225434181|ref|XP_002279175.1| PREDICTED: dual specificity protein kinase shkC-like [Vitis vinifera]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/266 (85%), Positives = 248/266 (93%)

Query: 4   LTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDE 63
           + AQLKRGISRQFSTGSL R+L+RQ SRQSS DPRR N+RFS GRQSSLDPIRRSPV +E
Sbjct: 3   IAAQLKRGISRQFSTGSLLRTLSRQFSRQSSLDPRRTNLRFSLGRQSSLDPIRRSPVNEE 62

Query: 64  LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKL 123
           L+VPENLDSTMQ+LFMACRGDVKGVEDLLNEG+DVNSIDLDGRTALHIAACEG +EVVKL
Sbjct: 63  LSVPENLDSTMQMLFMACRGDVKGVEDLLNEGTDVNSIDLDGRTALHIAACEGQIEVVKL 122

Query: 124 LLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEY 183
           LLS+KANIDARDRWGSTAAADAKYYGNVE+YNILKARGAK PK ++TPM VANPREVPEY
Sbjct: 123 LLSRKANIDARDRWGSTAAADAKYYGNVEIYNILKARGAKTPKIRKTPMAVANPREVPEY 182

Query: 184 ELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKAR 243
           ELNPLELQVRK+DGITKGSYQVAKWNGTKV VKILDK+S+ DP+ INAF +ELT++EK R
Sbjct: 183 ELNPLELQVRKSDGITKGSYQVAKWNGTKVSVKILDKDSYSDPDSINAFKYELTLLEKVR 242

Query: 244 HPNVVQFVGAVTQNIPMMIVLEYHAK 269
           HPNVVQFVGAVTQNIPMMIV EYH K
Sbjct: 243 HPNVVQFVGAVTQNIPMMIVSEYHPK 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802196|emb|CAN63815.1| hypothetical protein VITISV_010336 [Vitis vinifera]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/266 (85%), Positives = 248/266 (93%)

Query: 4   LTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDE 63
           + AQLKRGISRQFSTGSL R+L+RQ SRQSS DPRR N+RFS GRQSSLDPIRRSPV +E
Sbjct: 3   IAAQLKRGISRQFSTGSLLRTLSRQFSRQSSLDPRRTNLRFSLGRQSSLDPIRRSPVNEE 62

Query: 64  LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKL 123
           L+VPENLDSTMQ+LFMACRGDVKGVEDLLNEG+DVNSIDLDGRTALHIAACEG +EVVKL
Sbjct: 63  LSVPENLDSTMQMLFMACRGDVKGVEDLLNEGTDVNSIDLDGRTALHIAACEGQIEVVKL 122

Query: 124 LLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEY 183
           LLS+KANIDARDRWGSTAAADAKYYGNVE+YNILKARGAK PK ++TPM VANPREVPEY
Sbjct: 123 LLSRKANIDARDRWGSTAAADAKYYGNVEIYNILKARGAKTPKIRKTPMAVANPREVPEY 182

Query: 184 ELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKAR 243
           ELNPLELQVRK+DGITKGSYQVAKWNGTKV VKILDK+S+ DP+ INAF +ELT++EK R
Sbjct: 183 ELNPLELQVRKSDGITKGSYQVAKWNGTKVSVKILDKDSYSDPDSINAFKYELTLLEKVR 242

Query: 244 HPNVVQFVGAVTQNIPMMIVLEYHAK 269
           HPNVVQFVGAVTQNIPMMIV EYH K
Sbjct: 243 HPNVVQFVGAVTQNIPMMIVSEYHPK 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18700701|gb|AAL78674.1|AF458699_1 ankyrin-kinase [Medicago truncatula]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 230/273 (84%), Positives = 252/273 (92%), Gaps = 4/273 (1%)

Query: 1   MENLTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPV 60
           MEN+ AQLKRGISRQFS+GSLR++L+RQ +RQ+S DPRRNN+RFSFGRQSSLDPIRRSP 
Sbjct: 1   MENIAAQLKRGISRQFSSGSLRKTLSRQFTRQASLDPRRNNLRFSFGRQSSLDPIRRSPG 60

Query: 61  QDE----LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEG 116
            DE    LTVPENLDSTMQLLFMACRGDVKGVEDLLNEG DVNSIDLDGRTALHIAACEG
Sbjct: 61  DDEDQAELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEG 120

Query: 117 HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVAN 176
           HV+V KLLLS+KAN+DARDRWGSTAAADAKYYGN EVY +LKARGAKVPKT++TPMTVAN
Sbjct: 121 HVDVAKLLLSRKANLDARDRWGSTAAADAKYYGNTEVYYMLKARGAKVPKTRKTPMTVAN 180

Query: 177 PREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHEL 236
           PREVPEYELNPLELQVRK+DGI+ G+YQVAKWNGTKV VKILDK+S+ DP+ IN F HEL
Sbjct: 181 PREVPEYELNPLELQVRKSDGISTGTYQVAKWNGTKVAVKILDKDSYSDPDTINIFKHEL 240

Query: 237 TIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
           T++EK RHPNVVQFVGAVTQNIPMMIV EYHAK
Sbjct: 241 TLLEKVRHPNVVQFVGAVTQNIPMMIVREYHAK 273

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577895|ref|XP_002529820.1| ankyrin-kinase, putative [Ricinus communis] gi|223530697|gb|EEF32569.1| ankyrin-kinase, putative [Ricinus communis]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/272 (84%), Positives = 251/272 (92%), Gaps = 3/272 (1%)

Query: 1   MENLTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPV 60
           ME +T QLKRGISRQFSTGSLRR+ +RQ SRQ+S DPRR+N+RFSFGRQSSLDPIRRSP 
Sbjct: 1   MEGITTQLKRGISRQFSTGSLRRTFSRQFSRQTSLDPRRHNLRFSFGRQSSLDPIRRSPG 60

Query: 61  ---QDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGH 117
              +++  VPENLDSTMQLLFMACRGDVKGVEDLLNEG DVNSIDLDGRTALHIAACEGH
Sbjct: 61  HHDEEQFAVPENLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGH 120

Query: 118 VEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANP 177
           VEVV+LLL++KANIDARDRWGSTA ADAKYYGNVEVYNILKARGAK PKT++TPMTVANP
Sbjct: 121 VEVVRLLLTRKANIDARDRWGSTACADAKYYGNVEVYNILKARGAKAPKTRKTPMTVANP 180

Query: 178 REVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELT 237
           REVPEYELNPLELQVRK+DGI+KG+YQ+AKWNGTKV VKILDK+S+ DPE INAF HELT
Sbjct: 181 REVPEYELNPLELQVRKSDGISKGTYQLAKWNGTKVTVKILDKDSYSDPESINAFKHELT 240

Query: 238 IVEKARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
           ++EK RHPNVVQFVGAVTQNIPMMIV EYH K
Sbjct: 241 LLEKVRHPNVVQFVGAVTQNIPMMIVSEYHPK 272

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512588|ref|XP_003525000.1| PREDICTED: serine/threonine-protein kinase CTR1-like [Glycine max]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 226/271 (83%), Positives = 252/271 (92%), Gaps = 2/271 (0%)

Query: 1   MENLTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPV 60
           ME++ AQLKRGISRQFS+GSLRR+L+RQ +RQ+S DPRRNN RFSFGRQSSLDPIRRSP 
Sbjct: 1   MESIAAQLKRGISRQFSSGSLRRNLSRQFTRQASLDPRRNNQRFSFGRQSSLDPIRRSPC 60

Query: 61  QD--ELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHV 118
               ELTVPENLDSTMQLLFMACRGDVKGVEDLLNEG DVNSIDLDGRTALH+AACEGHV
Sbjct: 61  SGNAELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHVAACEGHV 120

Query: 119 EVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPR 178
           EV +LLLS+KAN+DARDRWGSTAAADAKYYGN E+Y +LKARGAKVPKT++TPMTVANPR
Sbjct: 121 EVARLLLSRKANLDARDRWGSTAAADAKYYGNTEIYYMLKARGAKVPKTRKTPMTVANPR 180

Query: 179 EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTI 238
           EVPEYELNP+ELQVRK+DGI+KG+YQVAKWNGTKV VKILDK+S+ DP+ INAF HELT+
Sbjct: 181 EVPEYELNPVELQVRKSDGISKGTYQVAKWNGTKVAVKILDKDSYSDPDTINAFKHELTL 240

Query: 239 VEKARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
           +E+ RHPNVVQFVGAVTQNIPMMIV EYH+K
Sbjct: 241 LERVRHPNVVQFVGAVTQNIPMMIVREYHSK 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438147|ref|XP_004136851.1| PREDICTED: serine/threonine-protein kinase TNNI3K-like [Cucumis sativus]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/270 (82%), Positives = 253/270 (93%), Gaps = 1/270 (0%)

Query: 1   MENLTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPV 60
           M+N+TAQLKRGISRQFSTGSLRR+L+RQ +RQSS DPRRNN+RFSFGRQSSLDPIRR P 
Sbjct: 1   MDNITAQLKRGISRQFSTGSLRRTLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRCPD 60

Query: 61  QD-ELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVE 119
           +D EL++P+NLDSTMQLLFMACRGDV+GVEDLLN+G+DVNSIDLDGRTALHIAACEGH  
Sbjct: 61  EDNELSIPDNLDSTMQLLFMACRGDVRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHAA 120

Query: 120 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPRE 179
           VVKLLLS+KANIDARDRWGSTAAADAKYYGN E+YNILKARGAKVPK ++TPMTVANPRE
Sbjct: 121 VVKLLLSRKANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPRE 180

Query: 180 VPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIV 239
           VPEYELNPLELQ+R++DGI+KG+YQVAKWNGTKV VKILDK+ + +P+ INAF HELT++
Sbjct: 181 VPEYELNPLELQIRRSDGISKGAYQVAKWNGTKVSVKILDKDCYCNPDSINAFKHELTLL 240

Query: 240 EKARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
           EK RHPNVVQFVGAVTQN+PMMIV EYH K
Sbjct: 241 EKVRHPNVVQFVGAVTQNLPMMIVSEYHPK 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520086|ref|XP_004167065.1| PREDICTED: serine/threonine-protein kinase TNNI3K-like [Cucumis sativus]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/270 (82%), Positives = 253/270 (93%), Gaps = 1/270 (0%)

Query: 1   MENLTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPV 60
           M+N+TAQLKRGISRQFSTGSLRR+L+RQ +RQSS DPRRNN+RFSFGRQSSLDPIRR P 
Sbjct: 1   MDNITAQLKRGISRQFSTGSLRRTLSRQFTRQSSPDPRRNNLRFSFGRQSSLDPIRRCPD 60

Query: 61  QD-ELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVE 119
           +D EL++P+NLDSTMQLLFMACRGDV+GVEDLLN+G+DVNSIDLDGRTALHIAACEGH  
Sbjct: 61  EDNELSIPDNLDSTMQLLFMACRGDVRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHAA 120

Query: 120 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPRE 179
           VVKLLLS+KANIDARDRWGSTAAADAKYYGN E+YNILKARGAKVPK ++TPMTVANPRE
Sbjct: 121 VVKLLLSRKANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPRE 180

Query: 180 VPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIV 239
           VPEYELNPLELQ+R++DGI+KG+YQVAKWNGTKV VKILDK+ + +P+ INAF HELT++
Sbjct: 181 VPEYELNPLELQIRRSDGISKGAYQVAKWNGTKVSVKILDKDCYCNPDSINAFKHELTLL 240

Query: 240 EKARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
           EK RHPNVVQFVGAVTQN+PMMIV EYH K
Sbjct: 241 EKVRHPNVVQFVGAVTQNLPMMIVSEYHPK 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525359|ref|XP_003531292.1| PREDICTED: serine/threonine-protein kinase CTR1-like [Glycine max]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/271 (83%), Positives = 252/271 (92%), Gaps = 2/271 (0%)

Query: 1   MENLTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSP- 59
           ME++ AQLKRGISRQFS+GSLRR+L+RQ +RQ+S DPRRNN RFS GRQSSLDPIRRSP 
Sbjct: 1   MESIAAQLKRGISRQFSSGSLRRNLSRQFTRQASLDPRRNNQRFSIGRQSSLDPIRRSPG 60

Query: 60  -VQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHV 118
            VQ ELTVPENLDSTMQLLFMACRGD KGV+DLLNEG DVNSIDLDGRTALH+AACEGHV
Sbjct: 61  PVQPELTVPENLDSTMQLLFMACRGDAKGVDDLLNEGIDVNSIDLDGRTALHVAACEGHV 120

Query: 119 EVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPR 178
           EV +LLL++KAN+DARDRWGSTAAADAKYYGN E+Y +LKARGAKVPKT++TPMTVANPR
Sbjct: 121 EVARLLLTRKANLDARDRWGSTAAADAKYYGNTEIYYMLKARGAKVPKTRKTPMTVANPR 180

Query: 179 EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTI 238
           EVPEYELNPLELQVRK+DGI+KG+YQVAKWNGTKV VKILDK+S+ DP+ INAF HELT+
Sbjct: 181 EVPEYELNPLELQVRKSDGISKGTYQVAKWNGTKVAVKILDKDSYSDPDTINAFKHELTL 240

Query: 239 VEKARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
           +E+ RHPNVVQFVGAVTQNIPMMIV EYH+K
Sbjct: 241 LERVRHPNVVQFVGAVTQNIPMMIVREYHSK 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828101|ref|XP_002881933.1| hypothetical protein ARALYDRAFT_903788 [Arabidopsis lyrata subsp. lyrata] gi|297327772|gb|EFH58192.1| hypothetical protein ARALYDRAFT_903788 [Arabidopsis lyrata subsp. lyrata]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/280 (79%), Positives = 257/280 (91%), Gaps = 6/280 (2%)

Query: 1   MENLTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSP- 59
           MEN+TAQLKRGISRQFSTGS+RR+L+RQ +RQSS DPRR NMRFSFGRQSSLDPIRRSP 
Sbjct: 1   MENITAQLKRGISRQFSTGSIRRTLSRQFTRQSSLDPRRTNMRFSFGRQSSLDPIRRSPD 60

Query: 60  ---VQDE--LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAAC 114
                DE  ++VPENLDSTMQLLFMA +GDV+G+E+LL+EG DVNSIDLDGRTALHIAAC
Sbjct: 61  SVRSDDEPHMSVPENLDSTMQLLFMASKGDVRGIEELLDEGIDVNSIDLDGRTALHIAAC 120

Query: 115 EGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTV 174
           EGH+ VVK LLS++ANIDARDRWGSTAAADAKYYGN++VYN+LKARGAKVPKT++TPMTV
Sbjct: 121 EGHLGVVKALLSRRANIDARDRWGSTAAADAKYYGNLDVYNLLKARGAKVPKTRKTPMTV 180

Query: 175 ANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTH 234
           +NPREVPEYELNPLE+QVRKADGI+KG+YQVAKWNGT+V VKILDK+S+ DPERINAF H
Sbjct: 181 SNPREVPEYELNPLEIQVRKADGISKGAYQVAKWNGTRVSVKILDKDSYSDPERINAFRH 240

Query: 235 ELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPI 274
           ELT++EK RHPNV+QFVGAVTQNIPMMIV+EY+ K  + +
Sbjct: 241 ELTLLEKVRHPNVIQFVGAVTQNIPMMIVVEYNPKGDLSV 280

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569902|ref|NP_181913.3| Integrin-linked protein kinase-like protein [Arabidopsis thaliana] gi|330255240|gb|AEC10334.1| Integrin-linked protein kinase-like protein [Arabidopsis thaliana]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/280 (79%), Positives = 257/280 (91%), Gaps = 6/280 (2%)

Query: 1   MENLTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSP- 59
           MEN+TAQLKRGISRQFSTGS+RR+L+RQ +RQSS DPRR NMRFSFGRQSSLDPIRRSP 
Sbjct: 1   MENITAQLKRGISRQFSTGSIRRTLSRQFTRQSSLDPRRTNMRFSFGRQSSLDPIRRSPD 60

Query: 60  ---VQDE--LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAAC 114
                DE  ++VPENLDSTMQLLFMA +GDV+G+E+LL+EG DVNSIDLDGRTALHIAAC
Sbjct: 61  SSKSDDEPHMSVPENLDSTMQLLFMASKGDVRGIEELLDEGIDVNSIDLDGRTALHIAAC 120

Query: 115 EGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTV 174
           EGH+ VVK LLS++ANIDARDRWGSTAAADAKYYGN++VYN+LKARGAKVPKT++TPMTV
Sbjct: 121 EGHLGVVKALLSRRANIDARDRWGSTAAADAKYYGNLDVYNLLKARGAKVPKTRKTPMTV 180

Query: 175 ANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTH 234
           +NPREVPEYELNPLE+QVRK+DGI+KG+YQVAKWNGT+V VKILDK+S+ DPERINAF H
Sbjct: 181 SNPREVPEYELNPLEVQVRKSDGISKGAYQVAKWNGTRVSVKILDKDSYSDPERINAFRH 240

Query: 235 ELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPI 274
           ELT++EK RHPNV+QFVGAVTQNIPMMIV+EY+ K  + +
Sbjct: 241 ELTLLEKVRHPNVIQFVGAVTQNIPMMIVVEYNPKGDLSV 280

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2044034	479	AT2G43850 [Arabidopsis thalian	0.931	0.572	0.792	4.2e-118
TAIR|locus:2045258	476	AT2G31800 [Arabidopsis thalian	0.914	0.565	0.819	3.8e-117
TAIR|locus:2080517	477	AT3G59830 [Arabidopsis thalian	0.931	0.574	0.773	7.1e-116
TAIR|locus:2117129	459	AT4G18950 [Arabidopsis thalian	0.751	0.481	0.484	1.3e-52
TAIR|locus:2098999	471	AT3G58760 [Arabidopsis thalian	0.758	0.473	0.474	1.9e-51
TAIR|locus:2014849	438	VIK "VH1-interacting kinase" [	0.741	0.497	0.347	9.4e-27
UNIPROTKB|B7Z509	174	GLS "Glutaminase kidney isofor	0.309	0.522	0.423	4e-14
UNIPROTKB|F1NHF5	540	GLS "Uncharacterized protein"	0.309	0.168	0.423	5.1e-12
ZFIN|ZDB-GENE-070820-14	665	aspg "asparaginase homolog (S.	0.489	0.216	0.335	9.8e-12
UNIPROTKB|F1LR09	567	Gls "Glutaminase kidney isofor	0.309	0.160	0.423	1.3e-11

TAIR|locus:2044034 AT2G43850 [Arabidopsis thaliana (taxid:3702)]

 Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
 Identities = 222/280 (79%), Positives = 257/280 (91%)

Query:     1 MENLTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSP- 59
             MEN+TAQLKRGISRQFSTGS+RR+L+RQ +RQSS DPRR NMRFSFGRQSSLDPIRRSP 
Sbjct:     1 MENITAQLKRGISRQFSTGSIRRTLSRQFTRQSSLDPRRTNMRFSFGRQSSLDPIRRSPD 60

Query:    60 ---VQDE--LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAAC 114
                  DE  ++VPENLDSTMQLLFMA +GDV+G+E+LL+EG DVNSIDLDGRTALHIAAC
Sbjct:    61 SSKSDDEPHMSVPENLDSTMQLLFMASKGDVRGIEELLDEGIDVNSIDLDGRTALHIAAC 120

Query:   115 EGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTV 174
             EGH+ VVK LLS++ANIDARDRWGSTAAADAKYYGN++VYN+LKARGAKVPKT++TPMTV
Sbjct:   121 EGHLGVVKALLSRRANIDARDRWGSTAAADAKYYGNLDVYNLLKARGAKVPKTRKTPMTV 180

Query:   175 ANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTH 234
             +NPREVPEYELNPLE+QVRK+DGI+KG+YQVAKWNGT+V VKILDK+S+ DPERINAF H
Sbjct:   181 SNPREVPEYELNPLEVQVRKSDGISKGAYQVAKWNGTRVSVKILDKDSYSDPERINAFRH 240

Query:   235 ELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPI 274
             ELT++EK RHPNV+QFVGAVTQNIPMMIV+EY+ K  + +
Sbjct:   241 ELTLLEKVRHPNVIQFVGAVTQNIPMMIVVEYNPKGDLSV 280

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0046777 "protein autophosphorylation" evidence=IDA

TAIR|locus:2045258 AT2G31800 [Arabidopsis thaliana (taxid:3702)]

 Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
 Identities = 223/272 (81%), Positives = 247/272 (90%)

Query:     1 MENLTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPV 60
             M N+  QLKRGISRQFSTGSLRR+L+RQ +RQ+S DPRRNNMRFSFGRQSSLDPIRRSP 
Sbjct:     1 MANVVGQLKRGISRQFSTGSLRRTLSRQFTRQASHDPRRNNMRFSFGRQSSLDPIRRSPD 60

Query:    61 QD---ELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGH 117
                  +L VP+NLD+TMQLLF+ACRGDV+GV+DLL+EG DVNSIDLDGRTALHIAACEGH
Sbjct:    61 GSNGPQLAVPDNLDATMQLLFVACRGDVEGVQDLLDEGIDVNSIDLDGRTALHIAACEGH 120

Query:   118 VEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANP 177
             V+VVKLLL++KANIDARDRWGSTAAADAKYYGN++V+NILKARGAKVPKTKRTPM VANP
Sbjct:   121 VDVVKLLLTRKANIDARDRWGSTAAADAKYYGNMDVFNILKARGAKVPKTKRTPMVVANP 180

Query:   178 REVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELT 237
             REVPEYELNP ELQVRKADGI+KG YQVAKWNGTKV VKILDK+ +KD + INAF HELT
Sbjct:   181 REVPEYELNPQELQVRKADGISKGIYQVAKWNGTKVSVKILDKDLYKDSDTINAFKHELT 240

Query:   238 IVEKARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
             + EK RHPNVVQFVGAVTQN+PMMIV EYH K
Sbjct:   241 LFEKVRHPNVVQFVGAVTQNVPMMIVSEYHPK 272

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0046777 "protein autophosphorylation" evidence=IDA

TAIR|locus:2080517 AT3G59830 [Arabidopsis thaliana (taxid:3702)]

 Score = 1142 (407.1 bits), Expect = 7.1e-116, P = 7.1e-116
 Identities = 215/278 (77%), Positives = 251/278 (90%)

Query:     1 MENLTAQLKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSP- 59
             M+N+ AQLKRGISRQFSTGS+RR+L+RQ +RQ+S DPRRNNMRFSFGRQSSLDPIRRSP 
Sbjct:     1 MDNIAAQLKRGISRQFSTGSMRRTLSRQFTRQNSLDPRRNNMRFSFGRQSSLDPIRRSPE 60

Query:    60 ---VQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEG 116
                 +  ++VPENLDSTMQLLFMA +GDV GVE+LLNEG DVNSIDLDGRTALHIA+CEG
Sbjct:    61 SLSCEPHMSVPENLDSTMQLLFMASKGDVNGVEELLNEGIDVNSIDLDGRTALHIASCEG 120

Query:   117 HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVAN 176
             H +VVK+LLS++ANIDARDRWGSTAA DAKYYGNVEVYN+LKARGAK PKT++TPMTV N
Sbjct:   121 HYDVVKVLLSRRANIDARDRWGSTAAVDAKYYGNVEVYNLLKARGAKAPKTRKTPMTVGN 180

Query:   177 PREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHEL 236
             P+EVPEYELNPLELQVRK DGI+KG+YQVAKWNGT+V VKI DK+S+ DPER+NAFT+EL
Sbjct:   181 PKEVPEYELNPLELQVRKVDGISKGTYQVAKWNGTRVSVKIFDKDSYSDPERVNAFTNEL 240

Query:   237 TIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPI 274
             T++ KARHPN+VQFVGAVTQN+PMMIV+E + K  + +
Sbjct:   241 TLLAKARHPNIVQFVGAVTQNLPMMIVVECNPKGDLSV 278

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2117129 AT4G18950 [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 111/229 (48%), Positives = 154/229 (67%)

Query:    43 RFSFGRQSSLDP--IRRSPVQDELTV---PENLDSTMQLLFMACRGDVKGVEDLLNEGSD 97
             RF+ GRQSS+ P  I    V  E  V    E +D  ++L+++A  GD++G+++L++ G D
Sbjct:     9 RFTIGRQSSMAPEKIPEPSVHSEEEVFEDGEEIDGGVRLMYLANEGDIEGIKELIDSGID 68

Query:    98 VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNIL 157
              N  D+D RTALH+AAC+G  +VV+LLL +KA +D +DRWGST  ADA +Y N++V  IL
Sbjct:    69 ANYRDIDDRTALHVAACQGLKDVVELLLDRKAEVDPKDRWGSTPFADAIFYKNIDVIKIL 128

Query:   158 KARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKI 217
             +  GAK P     PM V   REVPEYE+NP EL   ++  ITKG+Y +A W G +V VK 
Sbjct:   129 EIHGAKHPMA---PMHVKTAREVPEYEINPSELDFTQSKEITKGTYCMAMWRGIQVAVKK 185

Query:   218 LDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
             LD E   D +++  F  EL ++++ RHPN+VQF+GAVTQ+ PMMIV EY
Sbjct:   186 LDDEVLSDDDQVRKFHDELALLQRLRHPNIVQFLGAVTQSNPMMIVTEY 234

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2098999 AT3G58760 [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 113/238 (47%), Positives = 155/238 (65%)

Query:    43 RFSFGRQSSLDPIRRSPVQDELTVPEN--L---------DSTMQLLFMACRGDVKGVEDL 91
             RF  GRQSSL P  R+P+ D LT  E+  L         D T++L+++A  GD+ G+  +
Sbjct:    10 RFKLGRQSSLAPESRTPI-DTLTEDEDDDLAAAATAGIGDPTIRLMYLANEGDIDGINKM 68

Query:    92 LNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNV 151
             L+ G++V+  D+D RTALH+AAC+G  +VV+LLLS+ A +D +DRWGST  ADA YY N 
Sbjct:    69 LDSGTNVDYRDIDARTALHVAACQGRTDVVELLLSRGAKVDTKDRWGSTPLADAVYYKNH 128

Query:   152 EVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGT 211
             +V  +L+  GAK P     PM V   +EVPEYE++P EL    +  I+KG++  A W G 
Sbjct:   129 DVIKLLEKHGAK-PTI--APMHVLTDKEVPEYEIHPTELDFSNSVKISKGTFNKASWRGI 185

Query:   212 KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
              V VK   +E   D +++NAF  EL +++K RHPNVVQF+GAVTQ+ PMMIV EY  K
Sbjct:   186 DVAVKTFGEEMFTDEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSTPMMIVTEYLPK 243

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

TAIR|locus:2014849 VIK "VH1-interacting kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 80/230 (34%), Positives = 121/230 (52%)

Query:    47 GRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSD-VNSIDLDG 105
             G Q++      SP  D+      +  T  +L+ A + D   V  LL E    V++ D D 
Sbjct:    12 GEQAAAGTSVPSPSYDKQKEKARVSRTSLILWHAHQNDAAAVRKLLEEDPTLVHARDYDK 71

Query:   106 RTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVP 165
             RT LH+A+  G ++VVK LL   A+++A+DRW +T  ADA+     ++  +LK+ G    
Sbjct:    72 RTPLHVASLHGWIDVVKCLLEFGADVNAQDRWKNTPLADAEGARKQKMIELLKSHGGLSY 131

Query:   166 KTKRT---PMTVANPREVP---EYELNPLELQVRKADGITKGSY-QVAK--WNGTKVWVK 216
                 +   P  V  P  +P   ++E+ P EL    A  I KGS+ ++ K  W GT V VK
Sbjct:   132 GQNGSHFEPKPVPPP--IPKKCDWEIEPAELDFSNAAMIGKGSFGEIVKAYWRGTPVAVK 189

Query:   217 ILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
              +      D   I  F HE+ ++ K RHPN+VQF+GAVT+  P+M++ EY
Sbjct:   190 RILPSLSDDRLVIQDFRHEVDLLVKLRHPNIVQFLGAVTERKPLMLITEY 239

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|B7Z509 GLS "Glutaminase kidney isoform, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 4.0e-14, P = 4.0e-14
 Identities = 39/92 (42%), Positives = 54/92 (58%)

Query:    68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
             + + S + LLF A  GDV  +        D+   D D RTALH+AA EGHVEVVK LL  
Sbjct:    54 QRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGHVEVVKFLLEA 113

Query:   128 -KANIDARDRWGSTAAADAKYYGNVEVYNILK 158
              K N   +DRW +T   +A ++G+ +V+ IL+
Sbjct:   114 CKVNPFPKDRWNNTPMDEALHFGHHDVFKILQ 145

GO:0002087 "regulation of respiratory gaseous exchange by neurological system process" evidence=IEA

GO:0004359 "glutaminase activity" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0006543 "glutamine catabolic process" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0007610 "behavior" evidence=IEA

UNIPROTKB|F1NHF5 GLS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 186 (70.5 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 39/92 (42%), Positives = 55/92 (59%)

Query:    68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
             + + S + LLF A  GDV  +      G D+   D D RTALH+AA EGHV+VVK LL  
Sbjct:   420 QRVKSVINLLFAAYTGDVSALRRFALSGMDMEQRDYDSRTALHVAAAEGHVDVVKFLLEA 479

Query:   128 -KANIDARDRWGSTAAADAKYYGNVEVYNILK 158
              K N   +DRW +T   +A ++G+ +V+ IL+
Sbjct:   480 CKVNPFPKDRWNNTPMDEALHFGHHDVFKILQ 511

GO:0004359 "glutaminase activity" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

ZFIN|ZDB-GENE-070820-14 aspg "asparaginase homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 185 (70.2 bits), Expect = 9.8e-12, P = 9.8e-12
 Identities = 52/155 (33%), Positives = 84/155 (54%)

Query:    73 TMQLLFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 131
             T  L+ +A + GD+  +E +   G+D++  D DGRT LHIAACEGH++VV+ LL K A +
Sbjct:   474 TPTLVCVAAKIGDIDALEAIREMGTDLSMADYDGRTPLHIAACEGHLKVVEYLLGKGATV 533

Query:   132 DARDRWGSTAAADAKYYGNVEVYNILKARGAKVPK-------TKRTPMTVANPREVPE-Y 183
              A+DR+G T   +A  + + +V  +L+  GA   +       T+   +  A   E  E +
Sbjct:   534 YAKDRFGHTPLRNAVRFRHKDVVKLLRKTGAHFSREEMADTGTELCSLAAAGDLEGLEIW 593

Query:   184 ELNPLELQVRKADGITKGSYQVAKWNGTKVWVKIL 218
             +L  ++L +   DG T    +VA+  G    V+ L
Sbjct:   594 QLAGVDLTMTSYDGQTP--IEVARATGCVESVEFL 626

GO:0004067 "asparaginase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1LR09 Gls "Glutaminase kidney isoform, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 183 (69.5 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 39/92 (42%), Positives = 54/92 (58%)

Query:    68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
             + + S + LLF A  GDV  +        D+   D D RTALH+AA EGHVEVVK LL  
Sbjct:   447 QRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGHVEVVKFLLEA 506

Query:   128 -KANIDARDRWGSTAAADAKYYGNVEVYNILK 158
              K N   +DRW +T   +A ++G+ +V+ IL+
Sbjct:   507 CKVNPFPKDRWNNTPMDEALHFGHHDVFKILQ 538

GO:0004359 "glutaminase activity" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034725001 SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (476 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-13
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-11
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-11
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-11
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	8e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-09
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	2e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-09
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	4e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-09
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	1e-08
smart00248	30	smart00248, ANK, ankyrin repeats	2e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-08
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	1e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-07
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	6e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-07
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	7e-07
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	8e-07
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-06
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-06
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	2e-06
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-05
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-05
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	8e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-04
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	4e-04
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	5e-04
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	5e-04
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	5e-04
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	6e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-04
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	9e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.001
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	0.001
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	0.001
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	0.001
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	0.001
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	0.001
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	0.002
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	0.002
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	0.002
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.003
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	0.003
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.004
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	0.004
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	0.004
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	0.004
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 97.1 bits (242), Expect = 3e-25
 Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 4/104 (3%)

Query: 76  LLFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
            L +A   G ++ V+ LL  G+DVN+ D DGRT LH+AA  GH+E+VKLLL K A+++AR
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69

Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVA 175
           D+ G+T    A   GN++V  +L   GA V    K  RTP+ +A
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 85.1 bits (211), Expect = 1e-20
 Identities = 36/82 (43%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A + G ++ V+ LL +G+DVN+ D DG T LH+AA  G+++VVKLLL   A+++ARD
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD 103

Query: 136 RWGSTAAADAKYYGNVEVYNIL 157
           + G T    A   G++EV  +L
Sbjct: 104 KDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 83.1 bits (206), Expect = 2e-20
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 2/89 (2%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L   A  G+++ V+ LL +G+DVN  D D  TALH+AA  G++E+VKLLL   A+++A+D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
           + G+TA   A   GN+E+  +L   GA +
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 80.8 bits (200), Expect = 2e-19
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 69  NLDSTMQLLFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
           NL  T   L +A R G+++ V+ LL  G+DVN+ D DG TALH+AA  G++E+VKLLL  
Sbjct: 24  NLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Query: 128 KANIDARD 135
            A+I+ +D
Sbjct: 84  GADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 9/83 (10%)

Query: 99  NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYYGNVEVYN 155
           N+ D DGRT LH+AA  GH+EVVKLLL   A+++A+D  G T    AA     G++E+  
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAA---KNGHLEIVK 57

Query: 156 ILKARGAKVP---KTKRTPMTVA 175
           +L  +GA V    K   TP+ +A
Sbjct: 58  LLLEKGADVNARDKDGNTPLHLA 80

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 57.9 bits (141), Expect = 1e-11
 Identities = 20/33 (60%), Positives = 26/33 (78%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDR 136
           DG T LH+AA  GH+EVVKLLL   A+++ARD+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 63.0 bits (153), Expect = 4e-11
 Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 4/107 (3%)

Query: 53  DPIRRSPVQDEL--TVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALH 110
            P      ++ +   V   L  T++L  +A  GD  G   LL  G+D N  D DGRT LH
Sbjct: 63  TPDHNLTTEEVIDPVVAHML--TVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLH 120

Query: 111 IAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNIL 157
           IA   GHV+VV++LL   A+    D+ G T    A+  G  EV  +L
Sbjct: 121 IACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 63.0 bits (153), Expect = 4e-11
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 68  ENLDSTM--QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLL 125
           E+ D  M   LL +A  G+   +E+LL    D +  D  GRT LHIAA +G+ + V +LL
Sbjct: 519 EHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLL 578

Query: 126 SKKANIDARDRWGSTAAADAKYYGNVEVYNIL 157
               N+  RD  G+TA  +A    + +++ IL
Sbjct: 579 KHACNVHIRDANGNTALWNAISAKHHKIFRIL 610

Length = 823

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 60.6 bits (148), Expect = 8e-11
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 12/78 (15%)

Query: 191 QVRKA--DGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVV 248
           +V K    G    + +VA        VK L KE   + ER   F  E  +++K  HPNVV
Sbjct: 10  EVYKGKLKGKDGKTTEVA--------VKTL-KEDASEEERK-DFLKEARVMKKLGHPNVV 59

Query: 249 QFVGAVTQNIPMMIVLEY 266
           + +G  T+  P+ +VLEY
Sbjct: 60  RLLGVCTEEEPLYLVLEY 77

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 29/50 (58%), Positives = 37/50 (74%), Gaps = 1/50 (2%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLL 125
           L +A R G++  V+ LL  G+DVN+ D DGRT LH+AA  GH+EVVKLLL
Sbjct: 77  LHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 91  LLNEGS-DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 141
           LL  G  D+N+ D +G T LH+AA  G +E+V+ LL    +++ RD  G TA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTA 52

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.8 bits (136), Expect = 1e-09
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 88  VEDLLNEGS---DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD 144
            + LL  G+     N  D DG T LH AA  G  ++V+LLL   A+ ++R+ +G TA   
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186

Query: 145 AKYYGNVEVYNILKARG 161
           A   G +E+  +L  +G
Sbjct: 187 AAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 209 NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
             TKV VK L KE   + ER   F  E +I++K  HPN+V+ +G  TQ  P+ IV EY
Sbjct: 27  TETKVAVKTL-KEGASEEERE-EFLEEASIMKKLSHPNIVRLLGVCTQGEPLYIVTEY 82

Length = 258

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 73  TMQLLFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLL 125
               L  A   G ++ V+ LL +G D+N  D DG TALHIAA  G++EV+KLLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 203 YQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMI 262
                    +V VK L +++    ++I  F  E  I+ K  HPNVV+ +G  T+  P+ I
Sbjct: 21  KGKGGKKKVEVAVKTLKEDA--SEQQIEEFLREARIMRKLDHPNVVKLLGVCTEEEPLYI 78

Query: 263 VLEY 266
           V+EY
Sbjct: 79  VMEY 82

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 6/56 (10%)

Query: 105 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYYGNVEVYNIL 157
           GRTALH AA  G +E+VK LL K  +I+  D  G+TA   AA     GN+EV  +L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAA---ENGNLEVLKLL 53

Length = 54

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 13/79 (16%)

Query: 191 QVRKA---DGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNV 247
           +V K            +VA        VK L +++    ++I  F  E  I+ K  HPN+
Sbjct: 14  EVYKGTLKGKGDGKEVEVA--------VKTLKEDA--SEQQIEEFLREARIMRKLDHPNI 63

Query: 248 VQFVGAVTQNIPMMIVLEY 266
           V+ +G  T+  P+MIV+EY
Sbjct: 64  VKLLGVCTEEEPLMIVMEY 82

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 20/30 (66%), Positives = 25/30 (83%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDA 133
           DGRT LH+AA  G++EVVKLLL K A+I+A
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 22/135 (16%)

Query: 69  NLDSTMQLLFMACRG--DVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVE-VVKLLL 125
               T   L++          V  LL  G+DVN+ +  G T LH+         V+KLL+
Sbjct: 45  EYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLI 104

Query: 126 SKKANIDARDRWGSTAAADAKYYGNVE----VYNILKARGAKVPKTKRTPMTVANPREVP 181
              A+++A+D+ G T      Y         V  +L  +G             A+   + 
Sbjct: 105 KAGADVNAKDKVGRTPL--HVYLSGFNINPKVIRLLLRKG-------------ADVNALD 149

Query: 182 EYELNPLELQVRKAD 196
            Y + PL + ++  +
Sbjct: 150 LYGMTPLAVLLKSRN 164

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 18/107 (16%)

Query: 74  MQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAA--CEGHVEVVKLLLSKKANI 131
           +             VE LL+ G++VN  + DG   LH+     +  ++++KLL+ K  +I
Sbjct: 110 LLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI 169

Query: 132 DARDR----------------WGSTAAADAKYYGNVEVYNILKARGA 162
           +A++R                +G T    A Y  N E    L   GA
Sbjct: 170 NAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA 216

Length = 422

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 133
           L   A R D+  +++LL +G +V+S D  G TAL +A  E HV++V+LL+   A++D 
Sbjct: 626 LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK 683

Length = 823

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 206 AKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVL 264
             WNG TKV VK L K     PE   AF  E  I++K RH  +VQ     ++  P+ IV 
Sbjct: 25  GTWNGTTKVAVKTL-KPGTMSPE---AFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVT 80

Query: 265 EYHAKVSM 272
           EY +K S+
Sbjct: 81  EYMSKGSL 88

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 9/122 (7%)

Query: 51  SLDPIRRSPVQDELTVPENLDSTMQLLFMACRG-DVKGVEDLLNEGSDVNSIDLDGRTAL 109
            +  I+   ++D+L         +  L++A    ++  V+ LL+ G+D+NS   +  T L
Sbjct: 14  KVKNIKYIIMEDDLNDYSYKKPVL-PLYLAKEARNIDVVKILLDNGADINSSTKNNSTPL 72

Query: 110 HIAACEGHV-----EVVKLLLSKKANIDARDRWGST--AAADAKYYGNVEVYNILKARGA 162
           H  +   +      E+VKLLL   AN++A D  G T    A +K   +  +   L   GA
Sbjct: 73  HYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGA 132

Query: 163 KV 164
            V
Sbjct: 133 NV 134

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 26/83 (31%), Positives = 38/83 (45%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
           V  LL+ G  +N  D+ G T LH A    + E VK LL   AN +  +++G T    A  
Sbjct: 175 VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAIL 234

Query: 148 YGNVEVYNILKARGAKVPKTKRT 170
             N E++ +L   G  +     T
Sbjct: 235 NNNKEIFKLLLNNGPSIKTIIET 257

Length = 422

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 9/90 (10%)

Query: 183 YELNPLELQVRKADGITKGSY---QVAKWNGTKVWVKILDKESHKDPERINAFTHELTIV 239
           + +N  EL++     I KG +    +  + G KV VK L  +S        AF  E +++
Sbjct: 1   WAINSKELKLG--ATIGKGEFGDVMLGDYRGQKVAVKCLKDDS----TAAQAFLAEASVM 54

Query: 240 EKARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
              RHPN+VQ +G V Q  P+ IV EY AK
Sbjct: 55  TTLRHPNLVQLLGVVLQGNPLYIVTEYMAK 84

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.1 bits (116), Expect = 7e-07
 Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 8/102 (7%)

Query: 69  NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAA-----CEGHVEVVKL 123
           +LD  + L   A +GD K V+ LL  G+DVN+ D DG T LH+AA      EG++EV KL
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 124 LLSKKA---NIDARDRWGSTAAADAKYYGNVEVYNILKARGA 162
           LL   A     + RD  G+T    A   G+ ++  +L   GA
Sbjct: 130 LLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA 171

Length = 235

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 27/113 (23%)

Query: 49  QSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGD-------------VKGVEDLLN-- 93
            +  D + RS +       ENL+ T  LL ++CRG              V  VE +L   
Sbjct: 45  INCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHL 104

Query: 94  ----EGSD----VNSIDLD----GRTALHIAACEGHVEVVKLLLSKKANIDAR 134
                 S      N         G TALH+AA   + E+VKLLL + A++ AR
Sbjct: 105 LAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPAR 157

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 198 ITKGSY-QV--AKWNGTKVWV--KILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
           + +G +  V  A+   T   V  KI+ KE       +     E+ I++K  HPN+V+  G
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKE--DSSSLLEELLREIEILKKLNHPNIVKLYG 58

Query: 253 AVTQNIPMMIVLEYHAKVSM 272
                  + +V+EY    S+
Sbjct: 59  VFEDENHLYLVMEYCEGGSL 78

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDA 133
           DG T LH+AA  G++E+VKLLL   A+I+A
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 82  RGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 141
           +GD++ ++ L   G+DVN  D +G   +HIA      +++KLLL K A  + +D  G + 
Sbjct: 134 KGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESP 193

Query: 142 AADAKYYGNVEVYNILKARGAKVP-KTKR--TPMTVA--NPREVPEYELNPLELQVRKAD 196
             +A  YG+     +L   G  +  K K   TP+  A  + R   E  +N   +  +  D
Sbjct: 194 LHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDID 253

Query: 197 GIT 199
           G T
Sbjct: 254 GST 256

Length = 434

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 198 ITKGSY-QV--AKWNGTKVWV--KILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
           + +GS+ +V  A+   T   V  K++ K+  K  +       E+ I++K +HPN+V+   
Sbjct: 7   LGEGSFGKVYLARDKKTGKLVAIKVIKKK--KIKKDRERILREIKILKKLKHPNIVRLYD 64

Query: 253 AVTQNIPMMIVLEY 266
                  + +V+EY
Sbjct: 65  VFEDEDKLYLVMEY 78

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 212 KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
            V +K L K    D +R++ F  E +I+ +  HPN+++  G VT++ P+MI+ EY
Sbjct: 34  DVAIKTL-KAGSSDKQRLD-FLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEY 86

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 8/80 (10%)

Query: 192 VRKADGITKGSYQVA-----KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPN 246
               + I KG +        K  G +V +K++  ES +  E+I     E+ I++K +HPN
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIIN---EIQILKKCKHPN 58

Query: 247 VVQFVGAVTQNIPMMIVLEY 266
           +V++ G+  +   + IV+E+
Sbjct: 59  IVKYYGSYLKKDELWIVMEF 78

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 198 ITKGSYQV---AKWNGT--KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
           +  GS+     AK  GT   V VKIL K S K  +   A   E+ I+ +  HPN+V+ + 
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARR-EIRILRRLSHPNIVRLID 65

Query: 253 AVTQNIPMMIVLEYH 267
           A      + +V+EY 
Sbjct: 66  AFEDKDHLYLVMEYC 80

Length = 260

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 21/81 (25%), Positives = 39/81 (48%)

Query: 91  LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
           L+  G+D +  + D  + LH+A   G ++ ++LL+  KA +D  D  G T    A   G+
Sbjct: 121 LIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGD 180

Query: 151 VEVYNILKARGAKVPKTKRTP 171
           + +  +L   GA +    +  
Sbjct: 181 IAICKMLLDSGANIDYFGKNG 201

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 66  VPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLL 125
              +  +T  L +     D +  E LL+ G++VN  D    + LH A    +  +V +LL
Sbjct: 163 KDRHKGNT-ALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILL 221

Query: 126 SKKANIDARDRWGSTAAADA-KYYGNVEVYNILKARGAKV 164
              A+ DARD+ G+T    +  Y  + ++  +L   G  V
Sbjct: 222 ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV 261

Length = 477

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 185 LNPLELQVRKADGITK-GSYQVAKWNGT-KVWVKILDKESHKDPERINAFTHELTIVEKA 242
           ++P EL   K  G  + G   + KW G   V +K++ + +  + +    F  E  ++ K 
Sbjct: 1   IDPSELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDD----FIEEAKVMMKL 56

Query: 243 RHPNVVQFVGAVTQNIPMMIVLEYHA 268
            HPN+VQ  G  T+  P+ IV EY A
Sbjct: 57  SHPNLVQLYGVCTKQRPIFIVTEYMA 82

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 6/56 (10%)

Query: 84  DVKGVEDLLNEGSDVNSIDLDGRTALHI----AACEGHVEVVKLLLSKKANIDARD 135
           + K +  LL +G+DVN++DL G T L +          VE+++LL+   A++ A D
Sbjct: 131 NPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNAN--VELLRLLIDAGADVYAVD 184

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 69  NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK 128
           N D    L      GD+KG+E L++  + ++  D  G T L IA  +G + + K+LL   
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG 191

Query: 129 ANIDARDRWGSTAAADAKYYGN-VEVYNILKARGA 162
           ANID   + G  AA       N +++  +   RGA
Sbjct: 192 ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGA 226

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 12/93 (12%)

Query: 55  IRRSPVQDELTVPE------------NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSID 102
           I+    QDEL + E            ++     + + A RG+ K V  LL+ G+DVN I 
Sbjct: 149 IKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIA 208

Query: 103 LDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           LD  + L  A    +++ +K ++  ++NI+  D
Sbjct: 209 LDDLSVLECAVDSKNIDTIKAIIDNRSNINKND 241

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 68  ENLDSTMQLLFMACRG-DVKGVEDLLNEGSDVNSIDLDGRTALHIAAC-EGHVEVVKLLL 125
           +N+     L  MA  G D + +  L+  G+DVN+ D    T LH A+  + + ++V  LL
Sbjct: 303 KNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLL 362

Query: 126 SKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
              AN++ARD    T    A    NV + N L   GA +
Sbjct: 363 ELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI 401

Length = 682

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 226 PERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLT 279
           P+    F  E  I+++  HPN+V+ +G   Q  P+ IV+E      +P    LT
Sbjct: 33  PDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMEL-----VPGGSLLT 81

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 82  RGDVKGVEDLLNEGSDVNSIDL-DGRTALHIAACEGHVEVVKLLLSKKANID 132
            GDVK VE+LL+ G   + +   DG T LH+A     ++++KLL+++ A+ D
Sbjct: 78  EGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD 129

Length = 413

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 179 EVPEYELNPLELQVRKADGITKGSYQVAKWNGT-KVWVKILDKESHKDPERINAFTHELT 237
           E+P      L L+V+   G   G   +  WNGT +V +K L K     PE   AF  E  
Sbjct: 2   EIPR---ESLRLEVKLGQGCF-GEVWMGTWNGTTRVAIKTL-KPGTMSPE---AFLQEAQ 53

Query: 238 IVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
           +++K RH  +VQ    V++  P+ IV EY +K S+
Sbjct: 54  VMKKLRHEKLVQLYAVVSEE-PIYIVTEYMSKGSL 87

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 209 NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMM--IVLEY 266
            G  + VK ++  S    E + A   E+ I+   +HPN+V++ G+          I LEY
Sbjct: 24  TGELMAVKSVE-LSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEY 82

Query: 267 HA 268
            +
Sbjct: 83  VS 84

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 211 TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           T V VK+L + +      +     E  ++++  HP+V++  GA +Q+ P+++++EY
Sbjct: 31  TTVAVKMLKENA--SSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEY 84

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 185 LNPLELQVRKADGITK-GSYQVAKWNGT-KVWVKILDKESHKDPERINAFTHELTIVEKA 242
           ++P +L   K  G  + G  +  KW G   V +K++ + S  + E    F  E  ++ K 
Sbjct: 1   IDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDE----FIEEAKVMMKL 56

Query: 243 RHPNVVQFVGAVTQNIPMMIVLEYHA 268
            H  +VQ  G  T+  P+ IV EY +
Sbjct: 57  SHEKLVQLYGVCTKQRPIYIVTEYMS 82

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 211 TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           T V +K L KE+ +   +   F  E  ++   +HPN+V  +G  T+  P  ++ EY
Sbjct: 36  TSVAIKTL-KENAEPKVQ-QEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEY 89

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           L  A   GD   VE LL  G+D NS +  G TAL  AA  G +E+VKLLL K  +
Sbjct: 151 LHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLH 205

Length = 235

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHA 268
           F  E  I+ K  H N+V+ +G   + +P  I+LE  A
Sbjct: 56  FLMEALIMSKFNHQNIVRLIGVSFERLPRFILLELMA 92

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 47  GRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGR 106
                L  +      D     +   +    L +     +  +   L     + + DLDGR
Sbjct: 15  FLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGR 74

Query: 107 TALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA-----AADAKYYGNVEVYNILKARG 161
             LH AA +G  ++VKLLL+  A+++A+D  G T             GN+EV  +L   G
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG 134

Query: 162 AK 163
           A 
Sbjct: 135 AD 136

Length = 235

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 183 YELNPLELQVRKADGITK-GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEK 241
           + LN  EL++ +  G  + G   +  + G KV VK +     K+     AF  E +++ +
Sbjct: 1   WALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCI-----KNDATAQAFLAEASVMTQ 55

Query: 242 ARHPNVVQFVGA-VTQNIPMMIVLEYHAKVSM 272
            RH N+VQ +G  V +   + IV EY AK S+
Sbjct: 56  LRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 87

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 179 EVPEYELNPLELQVRKADGITKGSYQVAKWNGT-KVWVKILDKESHKDPERINAFTHELT 237
           E+P      L L V+   G   G   +  WNGT KV +K L K     PE   AF  E  
Sbjct: 2   EIPR---ESLRLDVKLGQGCF-GEVWMGTWNGTTKVAIKTL-KPGTMMPE---AFLQEAQ 53

Query: 238 IVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
           I++K RH  +V     V++  P+ IV E+  K S+
Sbjct: 54  IMKKLRHDKLVPLYAVVSEE-PIYIVTEFMGKGSL 87

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 6/73 (8%)

Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
           G   +  WNG TKV VK L K     PE   +F  E  I++K RH  +VQ    V++  P
Sbjct: 20  GEVWMGTWNGNTKVAVKTL-KPGTMSPE---SFLEEAQIMKKLRHDKLVQLYAVVSEE-P 74

Query: 260 MMIVLEYHAKVSM 272
           + IV EY +K S+
Sbjct: 75  IYIVTEYMSKGSL 87

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 209 NGTKVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEY 266
           N  +V VK+L   +H D ER  A   EL I+    +H N+V  +GA T   P++++ EY
Sbjct: 67  NVLRVAVKMLKASAHTD-ER-EALMSELKILSHLGQHKNIVNLLGACTHGGPVLVITEY 123

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 208 WNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
           WN  T V VK L K    DP+    F  E  I++K RHP ++Q     T   P+ IV E
Sbjct: 27  WNNTTPVAVKTL-KPGTMDPK---DFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTE 81

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 213 VWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           V +K L K  + + +R + F  E +I+ +  HPN++   G VT++ P+MIV EY
Sbjct: 35  VAIKTL-KAGYTEKQRRD-FLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEY 86

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 75  QLLFMACRGDVKG----VEDLLNEGSDVNSIDLD-GRTALHIAACEGHVEVVKLLLSK-K 128
           Q   M    D       +E L+N G+D+N+ +L  G T LHIAA   + E+ + L  +  
Sbjct: 59  QCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLG 118

Query: 129 ANIDARDRWGSTAAADAKYYGNVEVYNILKARGA 162
            N+ A +    TA   A    +  +  IL+A GA
Sbjct: 119 VNLGAINYQHETAYHIAYKMRDRRMMEILRANGA 152

Length = 166

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 215 VKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
           V I   +   +P++   F  E +++ +  HPN+V  +G VTQ  P+ ++ EY  +
Sbjct: 37  VAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQ 91

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 84  DVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAA 143
           D + VE+LL+ G   N  D DG   LHIA+   +  +V +LL+  A+ +A D+   T   
Sbjct: 51  DERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPL- 109

Query: 144 DAKYYGN------VEVYNILKARGAKV 164
              YY +      +E  N+L   GAK+
Sbjct: 110 ---YYLSGTDDEVIERINLLVQYGAKI 133

Length = 446

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 226 PERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
           P+    F  E  I+++  HPN+V+ +G  TQ  P+ IV+E
Sbjct: 34  PDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 73

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA 145
           V  LL  G  +N+ +  G+T LH AA   +    + L++  A+I+A    G+T  +  
Sbjct: 240 VLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLM 297

Length = 471

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 209 NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHA 268
             TKV +K L K+    PE   AF  E  ++++ +HP +V+    VTQ  P+ I+ EY  
Sbjct: 29  GHTKVAIKSL-KQGSMSPE---AFLAEANLMKQLQHPRLVRLYAVVTQE-PIYIITEYME 83

Query: 269 KVSM 272
             S+
Sbjct: 84  NGSL 87

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 205 VAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVL 264
           V K     V VK L KE   D   +  F  E  ++++ +HPN+VQ +G  T+  P  I+ 
Sbjct: 26  VWKKYSLTVAVKTL-KE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT 81

Query: 265 EY 266
           E+
Sbjct: 82  EF 83

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 200 KGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
           +G Y   +     V VK     +   P     F  E  I+ +  HP++V+ +G +T+N P
Sbjct: 24  QGVYMSPENEKIAVAVKTCKNCT--SPSVREKFLQEAYIMRQFDHPHIVKLIGVITEN-P 80

Query: 260 MMIVLE 265
           + IV+E
Sbjct: 81  VWIVME 86

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 18/93 (19%)

Query: 174 VANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFT 233
           V NP+++P  +       VRK   +              V VKIL  +++K+    N F 
Sbjct: 26  VVNPQDLPTLQF---PFNVRKGRPLL-------------VAVKILRPDANKNAR--NDFL 67

Query: 234 HELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
            E+ I+ + + PN+++ +G      P+ ++ EY
Sbjct: 68  KEVKILSRLKDPNIIRLLGVCVDEDPLCMITEY 100

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	99.98
PHA02798	489	ankyrin-like protein; Provisional	99.98
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
PHA02730	672	ankyrin-like protein; Provisional	99.93
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.92
PHA02730	672	ankyrin-like protein; Provisional	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
PHA02792	631	ankyrin-like protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02792	631	ankyrin-like protein; Provisional	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.89
PHA02736	154	Viral ankyrin protein; Provisional	99.88
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.86
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.84
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.83
PHA02741	169	hypothetical protein; Provisional	99.83
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.82
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.78
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.78
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.74
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.72
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.69
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.68
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.67
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.67
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.66
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.64
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.64
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.63
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.62
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.61
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.57
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.57
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.56
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.51
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.48
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.45
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.21
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.16
PF13606	30	Ank_3: Ankyrin repeat	99.14
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.13
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.04
PF13606	30	Ank_3: Ankyrin repeat	99.02
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.01
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.97
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.96
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.94
KOG0522	560	consensus Ankyrin repeat protein [General function	98.91
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.86
KOG2384	223	consensus Major histocompatibility complex protein	98.67
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.66
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.66
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.65
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.64
KOG0511	516	consensus Ankyrin repeat protein [General function	98.63
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.58
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.57
KOG0522	560	consensus Ankyrin repeat protein [General function	98.5
KOG0511	516	consensus Ankyrin repeat protein [General function	98.45
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.4
KOG2384	223	consensus Major histocompatibility complex protein	98.35
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.35
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.95
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.63
KOG2505	591	consensus Ankyrin repeat protein [General function	97.56
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.33
KOG2505	591	consensus Ankyrin repeat protein [General function	96.95
KOG0192	362	consensus Tyrosine kinase specific for activated (	96.17
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.94
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	95.71
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	94.97
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.38
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	93.53
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.29
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	93.05
KOG0595	429	consensus Serine/threonine-protein kinase involved	92.57
KOG4721	904	consensus Serine/threonine protein kinase, contain	92.31
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.73
KOG1187	361	consensus Serine/threonine protein kinase [Signal	91.61
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.35
KOG0578	550	consensus p21-activated serine/threonine protein k	89.11
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	87.87
KOG0611	668	consensus Predicted serine/threonine protein kinas	85.44
PHA02988	283	hypothetical protein; Provisional	84.59
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	84.07
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	84.06

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.6e-37  Score=232.36  Aligned_cols=163  Identities=25%  Similarity=0.230  Sum_probs=146.2

Q ss_pred             CCCCCchhHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCCCHHHH
Q 022605           67 PENLDSTMQLLFMACRGDVKGVEDLL-NEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDARDRWGSTAAAD  144 (294)
Q Consensus        67 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll-~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~~~~g~t~L~~  144 (294)
                      ..|.+|+|||||||..|+.++|.+|+ +.+..+|.+|..||||||+||..|+.++|+.|+.+ |+|+|..++.|+|||||
T Consensus        33 r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHy  112 (226)
T KOG4412|consen   33 RDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHY  112 (226)
T ss_pred             cccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehh
Confidence            34558999999999999999999999 55788999999999999999999999999999999 99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCC
Q 022605          145 AKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHK  224 (294)
Q Consensus       145 A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~  224 (294)
                      |+..|..+++++|++.|+.++.                            +|..|.||||.|+.-|+++++++|+..++.
T Consensus       113 AagK~r~eIaqlLle~ga~i~~----------------------------kD~~~qtplHRAAavGklkvie~Li~~~a~  164 (226)
T KOG4412|consen  113 AAGKGRLEIAQLLLEKGALIRI----------------------------KDKQGQTPLHRAAAVGKLKVIEYLISQGAP  164 (226)
T ss_pred             hhcCChhhHHHHHHhcCCCCcc----------------------------cccccCchhHHHHhccchhhHHHHHhcCCC
Confidence            9999999999999999987744                            367788888888888888888888888888


Q ss_pred             ChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCC
Q 022605          225 DPERINAFTHELTIVEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       225 ~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~  257 (294)
                      .+..+..|+||||.|...+|+++..+|...+++
T Consensus       165 ~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd  197 (226)
T KOG4412|consen  165 LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGAD  197 (226)
T ss_pred             CCcccccCccHHHHHHhccCchHHHHHHHhccc
Confidence            888888888888888778888888888888876

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.1e-36  Score=254.28  Aligned_cols=188  Identities=18%  Similarity=0.148  Sum_probs=163.6

Q ss_pred             CCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 022605           67 PENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  146 (294)
Q Consensus        67 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~  146 (294)
                      ..|.+|.||||+|+..|+.+++++|+++|++++..+  |+||||+|+..|+.++|++|+++|++++..|..|+||||+|+
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa  102 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAV  102 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            467889999999999999999999999999988764  789999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCC---C-CCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhh
Q 022605          147 YYGNVEVYNILKARGAKVPKT---K-RTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILD  219 (294)
Q Consensus       147 ~~g~~~~v~~Ll~~ga~~~~~---~-~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll  219 (294)
                      ..|+.+++++|+++|++++..   | .||||+|+..   +++++|+..+....  ....|.||||+|+.+|+.+++++|+
T Consensus       103 ~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~--d~~~g~TpLh~Aa~~g~~eiv~lLL  180 (284)
T PHA02791        103 DSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDMMILLL  180 (284)
T ss_pred             HcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc--ccccCccHHHHHHHcCCHHHHHHHH
Confidence            999999999999999998654   5 4899999765   55677776542111  1124789999999999999999999


Q ss_pred             ccCCCChHhhhhhhhH-HHHHHHcCCCchhhhhhhhcCCC
Q 022605          220 KESHKDPERINAFTHE-LTIVEKARHPNVVQFVGAVTQNI  258 (294)
Q Consensus       220 ~~~~~~~~~~~~~~t~-l~~a~~~~~~~iv~~L~~~~~~~  258 (294)
                      +.|++....+..|.|| ||+|+..|+.++|++|...+++.
T Consensus       181 ~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i  220 (284)
T PHA02791        181 DYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI  220 (284)
T ss_pred             HCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            9998777766777766 99999999999999999999885

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=270.35  Aligned_cols=236  Identities=15%  Similarity=0.078  Sum_probs=195.1

Q ss_pred             CCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC--cHHHHHHHHhCC
Q 022605           51 SLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEG--HVEVVKLLLSKK  128 (294)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~g  128 (294)
                      ..+.++.++..+...+..+.+|.||||+||..|+.++|++|+++|+++|.+|..|.||||+|+..+  ..+++++|+++|
T Consensus        51 ~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~G  130 (446)
T PHA02946         51 DERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYG  130 (446)
T ss_pred             CHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcC
Confidence            445678888888888899999999999999999999999999999999999999999999998866  489999999999


Q ss_pred             CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC-----CCcccccCcchhhhhcccCCC
Q 022605          129 ANIDA-RDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR-----EVPEYELNPLELQVRKADGIT  199 (294)
Q Consensus       129 ad~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~-----~~~~~l~~~~~~~~~~~~~~~  199 (294)
                      ++++. .|..|.|||| |+..++.+++++|++.|++++..   |+||||+|+..     +.+++|+..+ .+++..+..|
T Consensus       131 adin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G-adin~~d~~G  208 (446)
T PHA02946        131 AKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLG-ISPSKPDHDG  208 (446)
T ss_pred             CCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcC-CCCcccCCCC
Confidence            99995 6899999997 67779999999999999998644   99999998442     3567777654 7788888999


Q ss_pred             CCceeeeeecC--chhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCC-chhhhhhhhcCCCC---eEEEE--------e
Q 022605          200 KGSYQVAKWNG--TKVWVKILDKESHKDPERINAFTHELTIVEKARHP-NVVQFVGAVTQNIP---MMIVL--------E  265 (294)
Q Consensus       200 ~t~l~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~-~iv~~L~~~~~~~~---l~~~~--------e  265 (294)
                      .||||+|+..|  +.+++++|+. ++.....+..|.||||+|++.++. +++++|...+....   +.+..        |
T Consensus       209 ~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e  287 (446)
T PHA02946        209 NTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLE  287 (446)
T ss_pred             CCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHH
Confidence            99999999886  7899999984 667777778999999999999885 89999988764321   00000        0


Q ss_pred             -cCCCC-CCCcccccccccccccccC
Q 022605          266 -YHAKV-SMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       266 -~~~~g-~l~~t~l~~a~~n~~~~~~  289 (294)
                       ...+| ..+.||||+|+.++++.++
T Consensus       288 ~l~~~g~~~~~TpLh~Aa~~g~~eiv  313 (446)
T PHA02946        288 IINDKGKQYDSTDFKMAVEVGSIRCV  313 (446)
T ss_pred             HHHHcCcccCCCHHHHHHHcCCHHHH
Confidence             11223 4578999999999987654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-35  Score=273.99  Aligned_cols=245  Identities=15%  Similarity=0.110  Sum_probs=217.9

Q ss_pred             CCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHH-----HHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 022605           36 DPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLF-----MACRGDVKGVEDLLNEGSDVNSIDLDGRTALH  110 (294)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-----Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh  110 (294)
                      +.....+++.++..++.+.++.++..+......+..+.||||+     |+..|+.+++++|+++|++++..|..|.||||
T Consensus        32 ~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~  111 (480)
T PHA03100         32 YKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLL  111 (480)
T ss_pred             hcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhh
Confidence            3355677788888999999999999998888888999999999     99999999999999999999999999999999


Q ss_pred             HHH--HcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHCCCCCCCC---CCCCccccCCC---CC
Q 022605          111 IAA--CEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYG--NVEVYNILKARGAKVPKT---KRTPMTVANPR---EV  180 (294)
Q Consensus       111 ~A~--~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~  180 (294)
                      +|+  ..|+.+++++|+++|++++..+..|.||||+|+..+  +.+++++|+++|++++..   |.||||+|+..   ++
T Consensus       112 ~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~i  191 (480)
T PHA03100        112 YAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDV  191 (480)
T ss_pred             HHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHH
Confidence            999  999999999999999999999999999999999999  999999999999998644   89999999765   55


Q ss_pred             cccccCcchhhhhcccCCC------CCceeeeeecCc--hhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhh
Q 022605          181 PEYELNPLELQVRKADGIT------KGSYQVAKWNGT--KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG  252 (294)
Q Consensus       181 ~~~l~~~~~~~~~~~~~~~------~t~l~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~  252 (294)
                      +++|+..+ .++...+..+      .||||.|+..|+  .+++++|++.|.+....+..|.||+|+|+..++.+++++|.
T Consensus       192 v~~Ll~~g-a~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll  270 (480)
T PHA03100        192 IKFLLDNG-ADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL  270 (480)
T ss_pred             HHHHHHcC-CCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            67777655 4555556666      899999999999  99999999998887777888999999999999999999999


Q ss_pred             hhcCCCCeEEEEecCCCCCCCcccccccccccccccC
Q 022605          253 AVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       253 ~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~~  289 (294)
                      ..++++        ...+..|.|||++|+.+++..++
T Consensus       271 ~~gad~--------n~~d~~g~tpl~~A~~~~~~~iv  299 (480)
T PHA03100        271 DLGANP--------NLVNKYGDTPLHIAILNNNKEIF  299 (480)
T ss_pred             HcCCCC--------CccCCCCCcHHHHHHHhCCHHHH
Confidence            999864        44677889999999999876543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-34  Score=264.71  Aligned_cols=239  Identities=15%  Similarity=0.049  Sum_probs=201.9

Q ss_pred             CCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCC------------------
Q 022605           35 FDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGS------------------   96 (294)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~------------------   96 (294)
                      ......++++.++..++.+.++.++..+......+..|.||||.|+..|+.+++++|+++|+                  
T Consensus        31 ~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~l  110 (434)
T PHA02874         31 SVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTI  110 (434)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHH
Confidence            34456677888888999999999998888888888889999999999999999999987764                  


Q ss_pred             -----CCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---C
Q 022605           97 -----DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---K  168 (294)
Q Consensus        97 -----~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~  168 (294)
                           +++.++..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..   |
T Consensus       111 l~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g  190 (434)
T PHA02874        111 LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNG  190 (434)
T ss_pred             HHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCC
Confidence                 46677889999999999999999999999999999999999999999999999999999999999987543   8


Q ss_pred             CCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcC-C
Q 022605          169 RTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKAR-H  244 (294)
Q Consensus       169 ~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~-~  244 (294)
                      .||||+|+..   +++++|+..+ .++...+..|.||||.|+..+. +++++|+ .+......+..|.||+|+|+..+ +
T Consensus       191 ~tpL~~A~~~g~~~iv~~Ll~~g-~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~  267 (434)
T PHA02874        191 ESPLHNAAEYGDYACIKLLIDHG-NHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCD  267 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCC-CCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCc
Confidence            9999999765   5667777665 4566677789999999998765 5667776 45566667778999999999875 7


Q ss_pred             CchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccccc
Q 022605          245 PNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHK  284 (294)
Q Consensus       245 ~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~  284 (294)
                      .+++++|...+++.        ...+..|.|||++|+.++
T Consensus       268 ~~iv~~Ll~~gad~--------n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        268 IDIIDILLYHKADI--------SIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             HHHHHHHHHCcCCC--------CCCCCCCCCHHHHHHHhC
Confidence            89999999988874        446777899999998876

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.8e-35  Score=268.06  Aligned_cols=245  Identities=19%  Similarity=0.108  Sum_probs=200.9

Q ss_pred             CCCCCCccccccCCC---CCccccCCCCCCCCCCCCCCCchhHHHHHHHcC-CHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 022605           36 DPRRNNMRFSFGRQS---SLDPIRRSPVQDELTVPENLDSTMQLLFMACRG-DVKGVEDLLNEGSDVNSIDLDGRTALHI  111 (294)
Q Consensus        36 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~~~~g~TpLh~  111 (294)
                      +..+.++++.+...+   ..+.++.++..+...+..+..|.||||+|+..| +.+++++|+++|++++.+|..|.||||+
T Consensus        44 ~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~  123 (471)
T PHA03095         44 GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV  123 (471)
T ss_pred             CCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            444566666666665   667777888888888888888999999999988 5889999999999999888889999999


Q ss_pred             HH--HcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHCCCCCCC---CCCCCccccCCC-----C
Q 022605          112 AA--CEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYG--NVEVYNILKARGAKVPK---TKRTPMTVANPR-----E  179 (294)
Q Consensus       112 A~--~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~---~~~t~l~~a~~~-----~  179 (294)
                      |+  ..++.+++++|+++|++++..|..|.||||+|+..+  +.+++++|+++|++++.   .|+||||+++..     +
T Consensus       124 a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~  203 (471)
T PHA03095        124 YLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRAR  203 (471)
T ss_pred             HhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHH
Confidence            98  556788999999999999998999999999888766  57889999999888743   488999887532     3


Q ss_pred             CcccccCcchhhhhcccCCCCCceeeeeecCch--hhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCC
Q 022605          180 VPEYELNPLELQVRKADGITKGSYQVAKWNGTK--VWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       180 ~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~--~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~  257 (294)
                      +++.++..+ .+++..+..|.||||+|+..|+.  .+++.|+..+.+....+..|.||||+|+..|+.+++++|...+++
T Consensus       204 i~~~Ll~~g-~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad  282 (471)
T PHA03095        204 IVRELIRAG-CDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGAD  282 (471)
T ss_pred             HHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            455666544 67778888999999999999874  578888888888877788999999999999999999999999987


Q ss_pred             CCeEEEEecCCCCCCCcccccccccccccccC
Q 022605          258 IPMMIVLEYHAKVSMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       258 ~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~~  289 (294)
                      +        ...+..|.||||+|+.+++..++
T Consensus       283 ~--------n~~~~~g~tpl~~A~~~~~~~~v  306 (471)
T PHA03095        283 I--------NAVSSDGNTPLSLMVRNNNGRAV  306 (471)
T ss_pred             C--------cccCCCCCCHHHHHHHhCCHHHH
Confidence            5        34567788999999999886543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.4e-34  Score=263.06  Aligned_cols=219  Identities=11%  Similarity=0.104  Sum_probs=183.9

Q ss_pred             CCCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcC--CHHHHHHHHhcCCCCCC-CCCCCCcHHH
Q 022605           34 SFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRG--DVKGVEDLLNEGSDVNS-IDLDGRTALH  110 (294)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g--~~~~v~~Ll~~g~~~~~-~~~~g~TpLh  110 (294)
                      ..+..+.++++.++..++.+.++.++..+......|..|.||||+|+..+  ..+++++|+++|+++|. .|..|.||||
T Consensus        67 ~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~  146 (446)
T PHA02946         67 ETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL  146 (446)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH
Confidence            44556778888888899999999999999888889999999999999876  48999999999999995 6889999997


Q ss_pred             HHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHCCCCCCC---CCCCCccccCCC-----CC
Q 022605          111 IAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYG--NVEVYNILKARGAKVPK---TKRTPMTVANPR-----EV  180 (294)
Q Consensus       111 ~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~---~~~t~l~~a~~~-----~~  180 (294)
                       ||..|+.+++++|+++|++++..|..|+||||+|+..+  +.+++++|++.|++++.   .|+||||+|+..     ++
T Consensus       147 -aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~i  225 (446)
T PHA02946        147 -ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDI  225 (446)
T ss_pred             -HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHH
Confidence             66779999999999999999999999999999998765  46899999999999865   499999999764     24


Q ss_pred             cccccCcchhhhhcccCCCCCceeeeeecCc-hhhhHhhhccCCCChH-----------------hh----hhhhhHHHH
Q 022605          181 PEYELNPLELQVRKADGITKGSYQVAKWNGT-KVWVKILDKESHKDPE-----------------RI----NAFTHELTI  238 (294)
Q Consensus       181 ~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~-~~~v~~Ll~~~~~~~~-----------------~~----~~~~t~l~~  238 (294)
                      +++|+.  ..+++..+..|.||||+|+..++ .+++++|++.++....                 ..    ..+.||||+
T Consensus       226 v~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~  303 (446)
T PHA02946        226 INLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKM  303 (446)
T ss_pred             HHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHH
Confidence            556664  47788889999999999999988 4889999877653200                 01    235699999


Q ss_pred             HHHcCCCchhhhhhhhc
Q 022605          239 VEKARHPNVVQFVGAVT  255 (294)
Q Consensus       239 a~~~~~~~iv~~L~~~~  255 (294)
                      |++.|+.++|++|+..+
T Consensus       304 Aa~~g~~eivk~Ll~~~  320 (446)
T PHA02946        304 AVEVGSIRCVKYLLDND  320 (446)
T ss_pred             HHHcCCHHHHHHHHHCC
Confidence            99999999999998754

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-34  Score=262.27  Aligned_cols=231  Identities=16%  Similarity=0.101  Sum_probs=195.5

Q ss_pred             cccccCCCCCccccCCCCCCCC-CCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 022605           43 RFSFGRQSSLDPIRRSPVQDEL-TVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVV  121 (294)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v  121 (294)
                      +..++.+|+.+.++.++..... ....+.+|.||||.|+..|+.++|++|+++|+++|..+..|.||||.|+..|+.+++
T Consensus         5 l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv   84 (434)
T PHA02874          5 LRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDII   84 (434)
T ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            4456678888888888765443 456677899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCC-----------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCcccc
Q 022605          122 KLLLSKKA-----------------------NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVA  175 (294)
Q Consensus       122 ~~Ll~~ga-----------------------d~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a  175 (294)
                      ++|+++|+                       +++.++..|.||||+|+..|+.+++++|++.|++++..   |.||||+|
T Consensus        85 ~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A  164 (434)
T PHA02874         85 KLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA  164 (434)
T ss_pred             HHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence            99988765                       46778889999999999999999999999999998644   99999999


Q ss_pred             CCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhh
Q 022605          176 NPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG  252 (294)
Q Consensus       176 ~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~  252 (294)
                      +..   +++++|+..+ .+++..+..|.||||.|+..|+.+++++|++.+.........|.||+|.|+..++ +++.+|.
T Consensus       165 ~~~~~~~iv~~Ll~~g-~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll  242 (434)
T PHA02874        165 IKHNFFDIIKLLLEKG-AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI  242 (434)
T ss_pred             HHCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH
Confidence            765   5667777655 5556677889999999999999999999999998877777889999999999876 5666665


Q ss_pred             hhcCCCCeEEEEecCCCCCCCccccccccccc
Q 022605          253 AVTQNIPMMIVLEYHAKVSMPITPFLTLSFHK  284 (294)
Q Consensus       253 ~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~  284 (294)
                       .+.+        ....+..|.||||+|+..+
T Consensus       243 -~~~~--------in~~d~~G~TpLh~A~~~~  265 (434)
T PHA02874        243 -NNAS--------INDQDIDGSTPLHHAINPP  265 (434)
T ss_pred             -cCCC--------CCCcCCCCCCHHHHHHhcC
Confidence             3333        3456778999999999765

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2.1e-34  Score=256.88  Aligned_cols=202  Identities=21%  Similarity=0.223  Sum_probs=172.5

Q ss_pred             CccccccCCCCCccccCCCCC-CCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCcH
Q 022605           41 NMRFSFGRQSSLDPIRRSPVQ-DELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSID-LDGRTALHIAACEGHV  118 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~g~TpLh~A~~~g~~  118 (294)
                      ...+.++..|.++.++.+.+. +......|.+|.|+|||||.+++++++++||++|+++|..+ .-|.||||||+++|++
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~  125 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHI  125 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcH
Confidence            445777788999999999988 88888899999999999999999999999999999999998 6699999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCCCC---cccccCcchhhh
Q 022605          119 EVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREV---PEYELNPLELQV  192 (294)
Q Consensus       119 ~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~~~---~~~l~~~~~~~~  192 (294)
                      .+|.+|+++|||++.+|.+|.+|||+|++.|+.-.|-||+.+|+++|..   |+|||+||+.+..   +..|+..+....
T Consensus       126 ~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~  205 (600)
T KOG0509|consen  126 SVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLL  205 (600)
T ss_pred             HHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccc
Confidence            9999999999999999999999999999999999999999999998655   9999999987643   445554443333


Q ss_pred             hcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHc
Q 022605          193 RKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKA  242 (294)
Q Consensus       193 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~  242 (294)
                      -..+..|.||||+|+..|+..++++|++.+......+.+|.||+++|.++
T Consensus       206 ~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  206 LTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            34448889999999999999999955544444445556789999999877

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3e-34  Score=269.66  Aligned_cols=240  Identities=10%  Similarity=0.064  Sum_probs=188.1

Q ss_pred             CCCCccccccC--CCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCC--HHHHHHHHhcCCCCCCCCCCCCcHHHHH-
Q 022605           38 RRNNMRFSFGR--QSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGD--VKGVEDLLNEGSDVNSIDLDGRTALHIA-  112 (294)
Q Consensus        38 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~--~~~v~~Ll~~g~~~~~~~~~g~TpLh~A-  112 (294)
                      .+.++++.+..  .++.+.++.++..+...+..|..|.||||+|+..|+  .++|++|+++|+|+|.+|..|+||||+| 
T Consensus       176 ~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai  255 (764)
T PHA02716        176 TGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYI  255 (764)
T ss_pred             CCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            34445544322  234577888888888888889999999999999985  4899999999999999999999999965 


Q ss_pred             ------------------------------------HHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH--cCCHHHH
Q 022605          113 ------------------------------------ACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY--YGNVEVY  154 (294)
Q Consensus       113 ------------------------------------~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~--~g~~~~v  154 (294)
                                                          +..|+.+++++|+++|++++.+|..|+||||+|+.  .++.+++
T Consensus       256 ~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIV  335 (764)
T PHA02716        256 INIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDII  335 (764)
T ss_pred             HhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHH
Confidence                                                34578899999999999999999999999998764  4578999


Q ss_pred             HHHHHCCCCCCCC---CCCCccccCC-----------------CCCcccccCcchhhhhcccCCCCCceee----eeecC
Q 022605          155 NILKARGAKVPKT---KRTPMTVANP-----------------REVPEYELNPLELQVRKADGITKGSYQV----AKWNG  210 (294)
Q Consensus       155 ~~Ll~~ga~~~~~---~~t~l~~a~~-----------------~~~~~~l~~~~~~~~~~~~~~~~t~l~~----A~~~g  210 (294)
                      ++|+++|++++..   |+||||+|+.                 .+++++|+..+ .+++..+..|.||||.    |...+
T Consensus       336 klLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G-ADIn~kn~~G~TPLh~y~~~a~n~~  414 (764)
T PHA02716        336 KLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG-ADITAVNCLGYTPLTSYICTAQNYM  414 (764)
T ss_pred             HHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC-CCCCCcCCCCCChHHHHHHHHHhcC
Confidence            9999999998654   8999998632                 25677777765 7788888899999983    33456


Q ss_pred             chhhhHhhhccCCCC-------------------------------------------------------------hHhh
Q 022605          211 TKVWVKILDKESHKD-------------------------------------------------------------PERI  229 (294)
Q Consensus       211 ~~~~v~~Ll~~~~~~-------------------------------------------------------------~~~~  229 (294)
                      +.+++++|++.+...                                                             ...+
T Consensus       415 ~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D  494 (764)
T PHA02716        415 YYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCE  494 (764)
T ss_pred             hHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccC
Confidence            788888888754210                                                             0012


Q ss_pred             hhhhhHHHHHHHcCCCchh-----hhhhhhcCCCCeEEEEecCCCCCCCccccccccccccc
Q 022605          230 NAFTHELTIVEKARHPNVV-----QFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQT  286 (294)
Q Consensus       230 ~~~~t~l~~a~~~~~~~iv-----~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~  286 (294)
                      ..|+||||+|+..|+.+++     ++|...+++.        ...+..|.||||+|+++++.
T Consensus       495 ~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADI--------N~~d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        495 TSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNI--------NIPTKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             CCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCC--------cccCCCCCCHHHHHHHcCCc
Confidence            3578999999999887655     9999988874        45778889999999999865

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-34  Score=261.27  Aligned_cols=236  Identities=17%  Similarity=0.044  Sum_probs=203.8

Q ss_pred             CCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHH
Q 022605           40 NNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVE  119 (294)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~  119 (294)
                      ...++.++..|+.+.++.++..+......+..|.||||+|+..|+.++|++|+++|++++..+..+.||||+|+..|+.+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~   82 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK   82 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence            34567777888999999999888888888889999999999999999999999999999998899999999999999999


Q ss_pred             HHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchhhh
Q 022605          120 VVKLLLSKKANID-ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLELQV  192 (294)
Q Consensus       120 ~v~~Ll~~gad~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~~~  192 (294)
                      +|++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..   +.+++|+..+ .++
T Consensus        83 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g-~~~  161 (413)
T PHA02875         83 AVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK-ACL  161 (413)
T ss_pred             HHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCC
Confidence            9999999998775 45678999999999999999999999999998654   99999999765   5567777655 566


Q ss_pred             hcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhh-hhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCC
Q 022605          193 RKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAF-THELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVS  271 (294)
Q Consensus       193 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~  271 (294)
                      +..+..|.||||+|+..|+.+++++|++.|+........| .+|+++|+..++.+++++|...++++....     ..+.
T Consensus       162 ~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~-----~~~~  236 (413)
T PHA02875        162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMF-----MIEG  236 (413)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHh-----hcCC
Confidence            7778889999999999999999999999998877666665 589999999999999999999999875421     2234


Q ss_pred             CCcccccccc
Q 022605          272 MPITPFLTLS  281 (294)
Q Consensus       272 l~~t~l~~a~  281 (294)
                      -+.|||+.+.
T Consensus       237 ~~~t~l~~~~  246 (413)
T PHA02875        237 EECTILDMIC  246 (413)
T ss_pred             CchHHHHHHH
Confidence            5668887654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.2e-34  Score=264.35  Aligned_cols=235  Identities=18%  Similarity=0.134  Sum_probs=203.5

Q ss_pred             ccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcC---CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC-cHHHH
Q 022605           46 FGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRG---DVKGVEDLLNEGSDVNSIDLDGRTALHIAACEG-HVEVV  121 (294)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g-~~~~v  121 (294)
                      .....+.+.++.++..+......+..|.||||+|+..|   +.+++++|+++|+++|.++..|.||||+|+..| +.+++
T Consensus        21 ~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv  100 (471)
T PHA03095         21 NASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVI  100 (471)
T ss_pred             cCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHH
Confidence            35567778889999888888888999999999999998   999999999999999999999999999999999 59999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHCCCCCCC---CCCCCccccCCC-----CCcccccCcchhh
Q 022605          122 KLLLSKKANIDARDRWGSTAAADAK--YYGNVEVYNILKARGAKVPK---TKRTPMTVANPR-----EVPEYELNPLELQ  191 (294)
Q Consensus       122 ~~Ll~~gad~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~ga~~~~---~~~t~l~~a~~~-----~~~~~l~~~~~~~  191 (294)
                      ++|+++|++++..|..|.||||+|+  ..++.+++++|+++|++++.   .|.||||+|...     +++++|+..+ .+
T Consensus       101 ~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g-~~  179 (471)
T PHA03095        101 KLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAG-AD  179 (471)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC-CC
Confidence            9999999999999999999999999  55689999999999999865   499999987442     4567777665 44


Q ss_pred             hhcccCCCCCceeeeeec--CchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCC--chhhhhhhhcCCCCeEEEEecC
Q 022605          192 VRKADGITKGSYQVAKWN--GTKVWVKILDKESHKDPERINAFTHELTIVEKARHP--NVVQFVGAVTQNIPMMIVLEYH  267 (294)
Q Consensus       192 ~~~~~~~~~t~l~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~--~iv~~L~~~~~~~~l~~~~e~~  267 (294)
                      +...+..|.||||.|+..  ++.++++.|++.|..+...+..|.||+|+|+..++.  .++++|...+.+        ..
T Consensus       180 ~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d--------in  251 (471)
T PHA03095        180 VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS--------IN  251 (471)
T ss_pred             CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC--------CC
Confidence            455588899999998864  788999999999998888889999999999999986  577788777765        44


Q ss_pred             CCCCCCcccccccccccccccC
Q 022605          268 AKVSMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       268 ~~g~l~~t~l~~a~~n~~~~~~  289 (294)
                      ..+..|.||||+|+.+++..++
T Consensus       252 ~~d~~g~TpLh~A~~~~~~~~v  273 (471)
T PHA03095        252 ARNRYGQTPLHYAAVFNNPRAC  273 (471)
T ss_pred             CcCCCCCCHHHHHHHcCCHHHH
Confidence            5668899999999998876543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3.5e-34  Score=269.18  Aligned_cols=207  Identities=14%  Similarity=-0.005  Sum_probs=176.1

Q ss_pred             CCCCCccccCCCCCC-CCCCCC-CCCchhHHHHHHH--cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc--HHHH
Q 022605           48 RQSSLDPIRRSPVQD-ELTVPE-NLDSTMQLLFMAC--RGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGH--VEVV  121 (294)
Q Consensus        48 ~~~~~~~~~~~~~~~-~~~~~~-~~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~--~~~v  121 (294)
                      +.+..+.++.+++.+ ...+.. +..|.||||+|+.  +++.++|++|+++|+++|.+|..|.||||+|+..|+  .++|
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIV  230 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVI  230 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHH
Confidence            356677888888888 666666 8889999999875  468999999999999999999999999999999995  5999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHH-------------------------------------HHcCCHHHHHHHHHCCCCC
Q 022605          122 KLLLSKKANIDARDRWGSTAAADA-------------------------------------KYYGNVEVYNILKARGAKV  164 (294)
Q Consensus       122 ~~Ll~~gad~~~~~~~g~t~L~~A-------------------------------------~~~g~~~~v~~Ll~~ga~~  164 (294)
                      ++|+++|||+|.+|..|+||||+|                                     +..|+.+++++|++.|+++
T Consensus       231 klLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI  310 (764)
T PHA02716        231 KKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL  310 (764)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce
Confidence            999999999999999999999975                                     3457889999999999998


Q ss_pred             CCC---CCCCccccC-----CCCCcccccCcchhhhhcccCCCCCceeeeee--------------cCchhhhHhhhccC
Q 022605          165 PKT---KRTPMTVAN-----PREVPEYELNPLELQVRKADGITKGSYQVAKW--------------NGTKVWVKILDKES  222 (294)
Q Consensus       165 ~~~---~~t~l~~a~-----~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~--------------~g~~~~v~~Ll~~~  222 (294)
                      +..   |+||||+|+     ..+++++|+..+ .+++..+..|.||||+|+.              .++.+++++|++.|
T Consensus       311 N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G-ADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G  389 (764)
T PHA02716        311 HYKDSAGRTCLHQYILRHNISTDIIKLLHEYG-NDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG  389 (764)
T ss_pred             eccCCCCCCHHHHHHHHhCCCchHHHHHHHcC-CCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC
Confidence            644   999999863     236788888765 6788889999999998754              47899999999999


Q ss_pred             CCChHhhhhhhhHHHH----HHHcCCCchhhhhhhhc
Q 022605          223 HKDPERINAFTHELTI----VEKARHPNVVQFVGAVT  255 (294)
Q Consensus       223 ~~~~~~~~~~~t~l~~----a~~~~~~~iv~~L~~~~  255 (294)
                      ++....+..|.||||.    |...++.+++++|.+.+
T Consensus       390 ADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~  426 (764)
T PHA02716        390 ADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDK  426 (764)
T ss_pred             CCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCc
Confidence            8888888899999994    33357789999987743

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.1e-34  Score=262.52  Aligned_cols=203  Identities=21%  Similarity=0.187  Sum_probs=155.1

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH-------------------------------
Q 022605           70 LDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHV-------------------------------  118 (294)
Q Consensus        70 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~-------------------------------  118 (294)
                      ..+.||||+||..|+.++|++|+++|+++|.+|..|.||||+||..|+.                               
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~  114 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV  114 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence            3455666666666666666666666666666666666666666654322                               


Q ss_pred             ---------------------------------HHHHHHHhCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCC
Q 022605          119 ---------------------------------EVVKLLLSKKANIDARDRW-GSTAAADAKYYGNVEVYNILKARGAKV  164 (294)
Q Consensus       119 ---------------------------------~~v~~Ll~~gad~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~  164 (294)
                                                       +++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|+++
T Consensus       115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~  194 (477)
T PHA02878        115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV  194 (477)
T ss_pred             HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC
Confidence                                             2677778888899988888 999999999999999999999999988


Q ss_pred             CCC---CCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeec-CchhhhHhhhccCCCChHhhh-hhhhHH
Q 022605          165 PKT---KRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWN-GTKVWVKILDKESHKDPERIN-AFTHEL  236 (294)
Q Consensus       165 ~~~---~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~-g~~~~v~~Ll~~~~~~~~~~~-~~~t~l  236 (294)
                      +..   |.||||+|+..   +++++|+..+ .+++..+..|.||||+|+.. ++.+++++|++.|++...... .|.|||
T Consensus       195 n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpL  273 (477)
T PHA02878        195 NIPDKTNNSPLHHAVKHYNKPIVHILLENG-ASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTAL  273 (477)
T ss_pred             CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHH
Confidence            644   88999998654   5667777654 66777788889999999865 688999999988877666554 688999


Q ss_pred             HHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccc
Q 022605          237 TIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFH  283 (294)
Q Consensus       237 ~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n  283 (294)
                      |+|  .++.+++++|...++++        ...+..|.||||+|+.+
T Consensus       274 h~A--~~~~~~v~~Ll~~gadi--------n~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        274 HSS--IKSERKLKLLLEYGADI--------NSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             HHH--ccCHHHHHHHHHCCCCC--------CCcCCCCCCHHHHHHHH
Confidence            999  56788999999888874        44567788999999864

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.5e-34  Score=244.25  Aligned_cols=213  Identities=15%  Similarity=0.049  Sum_probs=182.4

Q ss_pred             CCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 022605           35 FDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAAC  114 (294)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~  114 (294)
                      .+..+.++++.++..++.+.++.++..+......  ++.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~  103 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVD  103 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            3556778888888888888888888777655443  47899999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCC-CC-CCCCCccccCCC---CCcccccCcc
Q 022605          115 EGHVEVVKLLLSKKANIDARDRWGS-TAAADAKYYGNVEVYNILKARGAKV-PK-TKRTPMTVANPR---EVPEYELNPL  188 (294)
Q Consensus       115 ~g~~~~v~~Ll~~gad~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~-~~-~~~t~l~~a~~~---~~~~~l~~~~  188 (294)
                      .|+.+++++|+++|++++..+..|+ ||||+|+..|+.++|++|++++++. +. .|.||||+|+..   +++++|+..+
T Consensus       104 ~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~g  183 (284)
T PHA02791        104 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM  183 (284)
T ss_pred             cCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCC
Confidence            9999999999999999999998885 8999999999999999999998654 43 389999999776   5667788765


Q ss_pred             hhhhhcccCCCCCc-eeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCC
Q 022605          189 ELQVRKADGITKGS-YQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       189 ~~~~~~~~~~~~t~-l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~  257 (294)
                       .+++..+..|.|| ||+|+..|+.++|++|++.|+....++.+ .+++      ++.|++++|+....+
T Consensus       184 -Ad~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~-~~~l------~~~e~~~~ll~~~~~  245 (284)
T PHA02791        184 -TSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLE-NVLL------DDAEIAKMIIEKHVE  245 (284)
T ss_pred             -CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCccc-CccC------CCHHHHHHHHHhhhh
Confidence             5667777788877 99999999999999999999877666553 3444      888999999987765

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.6e-34  Score=262.82  Aligned_cols=227  Identities=19%  Similarity=0.171  Sum_probs=199.9

Q ss_pred             ccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH-----HHHcCcHHHHHHHHhC
Q 022605           53 DPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHI-----AACEGHVEVVKLLLSK  127 (294)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~-----A~~~g~~~~v~~Ll~~  127 (294)
                      ..++.++..+......+..+.||||.|+..|+.++|++|+++|++++..+..|.||||+     |+..++.+++++|+++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~   95 (480)
T PHA03100         16 KNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY   95 (480)
T ss_pred             HHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC
Confidence            34455565666667778899999999999999999999999999999999999999999     9999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHCCCCCCC---CCCCCccccCCC-----CCcccccCcchhhhhcccC
Q 022605          128 KANIDARDRWGSTAAADAK--YYGNVEVYNILKARGAKVPK---TKRTPMTVANPR-----EVPEYELNPLELQVRKADG  197 (294)
Q Consensus       128 gad~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~ga~~~~---~~~t~l~~a~~~-----~~~~~l~~~~~~~~~~~~~  197 (294)
                      |++++..|..|.||||+|+  ..|+.+++++|+++|++++.   .|.||||+|+..     +++++|+..+ .+++..+.
T Consensus        96 ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g-~din~~d~  174 (480)
T PHA03100         96 GANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG-VDINAKNR  174 (480)
T ss_pred             CCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCC-CCcccccC
Confidence            9999999999999999999  99999999999999999854   499999999754     4567777665 56677777


Q ss_pred             CCCCceeeeeecCchhhhHhhhccCCCChHhhhhh------hhHHHHHHHcCC--CchhhhhhhhcCCCCeEEEEecCCC
Q 022605          198 ITKGSYQVAKWNGTKVWVKILDKESHKDPERINAF------THELTIVEKARH--PNVVQFVGAVTQNIPMMIVLEYHAK  269 (294)
Q Consensus       198 ~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~------~t~l~~a~~~~~--~~iv~~L~~~~~~~~l~~~~e~~~~  269 (294)
                      .|.||||.|+..|+.+++++|++.|+........+      .||+|.|+..++  .+++++|...+.+.        ...
T Consensus       175 ~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di--------n~~  246 (480)
T PHA03100        175 YGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI--------NIK  246 (480)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC--------CCC
Confidence            89999999999999999999999998777666666      899999999999  99999999988763        345


Q ss_pred             CCCCccccccccccccccc
Q 022605          270 VSMPITPFLTLSFHKQTHT  288 (294)
Q Consensus       270 g~l~~t~l~~a~~n~~~~~  288 (294)
                      +..|.||||+|+.+++..+
T Consensus       247 d~~g~TpL~~A~~~~~~~i  265 (480)
T PHA03100        247 DVYGFTPLHYAVYNNNPEF  265 (480)
T ss_pred             CCCCCCHHHHHHHcCCHHH
Confidence            6788999999999987654

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-33  Score=255.48  Aligned_cols=209  Identities=15%  Similarity=0.044  Sum_probs=185.9

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q 022605           72 STMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNV  151 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~  151 (294)
                      .+++||.|+..|+.+++++|+++|+++|.++..|.||||+|+..|+.+++++|+++|++++..+..+.||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCC----CCCCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCC
Q 022605          152 EVYNILKARGAKVP----KTKRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHK  224 (294)
Q Consensus       152 ~~v~~Ll~~ga~~~----~~~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~  224 (294)
                      +++++|++.|++++    ..|.||||+|+..   +++++|+..+ .+++..+..|.||||+|+..|+.+++++|++.+..
T Consensus        82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g-ad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~  160 (413)
T PHA02875         82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG-ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC  160 (413)
T ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            99999999998763    3499999999765   5677787765 56677778899999999999999999999999988


Q ss_pred             ChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC-cccccccccccccccC
Q 022605          225 DPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP-ITPFLTLSFHKQTHTS  289 (294)
Q Consensus       225 ~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~-~t~l~~a~~n~~~~~~  289 (294)
                      ....+..|.||+|+|+..|+.+++++|...++++..        .+..| .||+|+|+.+++..++
T Consensus       161 ~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~--------~~~~~~~t~l~~A~~~~~~~iv  218 (413)
T PHA02875        161 LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDY--------FGKNGCVAALCYAIENNKIDIV  218 (413)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCc--------CCCCCCchHHHHHHHcCCHHHH
Confidence            777788899999999999999999999999987532        23333 5899999999887643

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.98  E-value=4e-33  Score=257.98  Aligned_cols=228  Identities=14%  Similarity=0.057  Sum_probs=185.2

Q ss_pred             CCccccCCCCCCCCCCCCCCCchhHHHHHHHcC------CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc---CcHHHH
Q 022605           51 SLDPIRRSPVQDELTVPENLDSTMQLLFMACRG------DVKGVEDLLNEGSDVNSIDLDGRTALHIAACE---GHVEVV  121 (294)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g------~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~---g~~~~v  121 (294)
                      ..+.++.+++.+...+..+ .+.||||.|+.++      +.++|++|+++|+|+|.+|..|.||||.|+..   |+.+++
T Consensus        49 ~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv  127 (494)
T PHA02989         49 KIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDML  127 (494)
T ss_pred             ChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHH
Confidence            4677888888887776655 5689999888754      46899999999999999999999999988765   678999


Q ss_pred             HHHHhCCCCC-CCCCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCC----CCCCCccccCC-------CCCcccccCc
Q 022605          122 KLLLSKKANI-DARDRWGSTAAADAKYY--GNVEVYNILKARGAKVPK----TKRTPMTVANP-------REVPEYELNP  187 (294)
Q Consensus       122 ~~Ll~~gad~-~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~----~~~t~l~~a~~-------~~~~~~l~~~  187 (294)
                      ++|+++|+|+ +..|..|+||||+|+..  ++.+++++|+++|++++.    .|.||||+|..       .+++++|+..
T Consensus       128 ~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~  207 (494)
T PHA02989        128 RFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKK  207 (494)
T ss_pred             HHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhC
Confidence            9999999999 78899999999998764  588999999999999865    38999998743       2567788876


Q ss_pred             chhhhhcccCCCCCceeeeee------cCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeE
Q 022605          188 LELQVRKADGITKGSYQVAKW------NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMM  261 (294)
Q Consensus       188 ~~~~~~~~~~~~~t~l~~A~~------~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~  261 (294)
                      + .+++..+..+.||||.++.      .+..+++++|+ .+++....+..|+||||+|+..++.+++++|...++++   
T Consensus       208 G-a~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~-~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadi---  282 (494)
T PHA02989        208 G-VNIETNNNGSESVLESFLDNNKILSKKEFKVLNFIL-KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDI---  282 (494)
T ss_pred             C-CCccccCCccccHHHHHHHhchhhcccchHHHHHHH-hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCc---
Confidence            5 5666666677888876544      34567888776 45666677788999999999999999999999999874   


Q ss_pred             EEEecCCCCCCCcccccccccccccccC
Q 022605          262 IVLEYHAKVSMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       262 ~~~e~~~~g~l~~t~l~~a~~n~~~~~~  289 (294)
                           ...+..|.||||+|+.+++..++
T Consensus       283 -----n~~d~~G~TpL~~A~~~~~~~iv  305 (494)
T PHA02989        283 -----YNVSKDGDTVLTYAIKHGNIDML  305 (494)
T ss_pred             -----cccCCCCCCHHHHHHHcCCHHHH
Confidence                 44677889999999999987654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.98  E-value=6.7e-33  Score=256.20  Aligned_cols=229  Identities=13%  Similarity=0.096  Sum_probs=179.0

Q ss_pred             CCCCccccCCCCCCCCCCCCCCCchhHHHHHHHc-----CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC---cHHH
Q 022605           49 QSSLDPIRRSPVQDELTVPENLDSTMQLLFMACR-----GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEG---HVEV  120 (294)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~-----g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g---~~~~  120 (294)
                      ..+.+.++.++..+...+..+..|.||||.|+.+     +..+++++|+++|+|+|.+|..|.||||+|+..+   +.++
T Consensus        48 ~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~i  127 (489)
T PHA02798         48 SPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEI  127 (489)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHH
Confidence            4467788999999999999999999999999864     6799999999999999999999999999999875   7899


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCC----CCCCccccCC-------CCCcccccC
Q 022605          121 VKLLLSKKANIDARDRWGSTAAADAKYYGN---VEVYNILKARGAKVPKT----KRTPMTVANP-------REVPEYELN  186 (294)
Q Consensus       121 v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~----~~t~l~~a~~-------~~~~~~l~~  186 (294)
                      +++|+++|+|++..|..|.||||+|+..++   .+++++|++.|++++..    |.||||.+..       .+++++|++
T Consensus       128 v~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~  207 (489)
T PHA02798        128 LLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVD  207 (489)
T ss_pred             HHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHH
Confidence            999999999999999999999999999998   99999999999998643    7899997633       245667766


Q ss_pred             cchhhhhcccCCCCCcee-------eeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCC
Q 022605          187 PLELQVRKADGITKGSYQ-------VAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP  259 (294)
Q Consensus       187 ~~~~~~~~~~~~~~t~l~-------~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~  259 (294)
                      .+ .+++..+..+.++++       .+...++.+++++|+. +.+.+..+..|.||||+|+..++.+++++|...++++ 
T Consensus       208 ~G-a~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdi-  284 (489)
T PHA02798        208 NG-FIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDI-  284 (489)
T ss_pred             CC-CCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcc-
Confidence            54 444444455555544       2445566667766653 4455555566777777777777777777777777653 


Q ss_pred             eEEEEecCCCCCCCcccccccccccccc
Q 022605          260 MMIVLEYHAKVSMPITPFLTLSFHKQTH  287 (294)
Q Consensus       260 l~~~~e~~~~g~l~~t~l~~a~~n~~~~  287 (294)
                             ...+..|.|||+.|+.+++..
T Consensus       285 -------n~~d~~G~TpL~~A~~~~~~~  305 (489)
T PHA02798        285 -------NIITELGNTCLFTAFENESKF  305 (489)
T ss_pred             -------cccCCCCCcHHHHHHHcCcHH
Confidence                   335566777777777766543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4e-32  Score=206.68  Aligned_cols=173  Identities=24%  Similarity=0.252  Sum_probs=145.2

Q ss_pred             CCCcccccc-CCCCCccccCCCCCCC-CCCCCCCCchhHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHc
Q 022605           39 RNNMRFSFG-RQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACE  115 (294)
Q Consensus        39 ~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~TpLh~A~~~  115 (294)
                      .+..+.+++ .-+..+.+.+++.+.. ..+.+|..|+||||+||..|+.++|+.|+.+ |+|+|+++..|.||||+|+..
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK  116 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGK  116 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcC
Confidence            334444554 4566677777774443 3466789999999999999999999999998 999999999999999999999


Q ss_pred             CcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcc
Q 022605          116 GHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKA  195 (294)
Q Consensus       116 g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~  195 (294)
                      |..+|+++|+++|+.++.+|..|.||||-|+.-|..+++++|+..|+.+|.                            .
T Consensus       117 ~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~----------------------------q  168 (226)
T KOG4412|consen  117 GRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNT----------------------------Q  168 (226)
T ss_pred             ChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCc----------------------------c
Confidence            999999999999999999999999999999999999999999999887644                            4


Q ss_pred             cCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHH
Q 022605          196 DGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVE  240 (294)
Q Consensus       196 ~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~  240 (294)
                      |..|+||||.|.-.|+.++..+|++.+++....++++ |++..++
T Consensus       169 Dk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  169 DKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             cccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence            7778888888877788888888888887666666666 7766554

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=5.5e-32  Score=249.57  Aligned_cols=213  Identities=17%  Similarity=0.109  Sum_probs=184.8

Q ss_pred             CCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCH---------------------------------
Q 022605           39 RNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDV---------------------------------   85 (294)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~---------------------------------   85 (294)
                      ...+++.++..++.+.++.++..+......+..|.||||+||..|+.                                 
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei  116 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEI  116 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHH
Confidence            33467888889999999999999988888999999999999987543                                 


Q ss_pred             -------------------------------HHHHHHHhcCCCCCCCCCC-CCcHHHHHHHcCcHHHHHHHHhCCCCCCC
Q 022605           86 -------------------------------KGVEDLLNEGSDVNSIDLD-GRTALHIAACEGHVEVVKLLLSKKANIDA  133 (294)
Q Consensus        86 -------------------------------~~v~~Ll~~g~~~~~~~~~-g~TpLh~A~~~g~~~~v~~Ll~~gad~~~  133 (294)
                                                     +++++|+++|++++.++.. |.||||+|+..|+.+++++|+++|++++.
T Consensus       117 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~  196 (477)
T PHA02878        117 FKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI  196 (477)
T ss_pred             HHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC
Confidence                                           2677788889999999988 99999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC----CCcccccCcchhhhhcccC-CCCCceee
Q 022605          134 RDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR----EVPEYELNPLELQVRKADG-ITKGSYQV  205 (294)
Q Consensus       134 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~----~~~~~l~~~~~~~~~~~~~-~~~t~l~~  205 (294)
                      .|..|.||||+|+..|+.+++++|++.|++++..   |.||||+|+..    +++++|+..+ .+++..+. .|.||||.
T Consensus       197 ~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g-advn~~~~~~g~TpLh~  275 (477)
T PHA02878        197 PDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHG-VDVNAKSYILGLTALHS  275 (477)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC-CCCCccCCCCCCCHHHH
Confidence            9999999999999999999999999999998654   99999999743    5677887765 55555554 68999999


Q ss_pred             eeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcC-CCchhhhhhhh
Q 022605          206 AKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKAR-HPNVVQFVGAV  254 (294)
Q Consensus       206 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~-~~~iv~~L~~~  254 (294)
                      |  .++.+++++|++.|++....+..|.||+++|++.+ +.+++++|...
T Consensus       276 A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        276 S--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN  323 (477)
T ss_pred             H--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHH
Confidence            9  57889999999999988888899999999999864 56788887654

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.2e-31  Score=257.40  Aligned_cols=237  Identities=17%  Similarity=0.104  Sum_probs=145.6

Q ss_pred             cCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH-
Q 022605           47 GRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLL-  125 (294)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll-  125 (294)
                      ..++..+.++.++..+...+..+..|.||||+||..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+ 
T Consensus       153 i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~  232 (682)
T PHA02876        153 IQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIID  232 (682)
T ss_pred             HHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            3556666777777777777778888888888888888888888888888888877777777777777766666555443 


Q ss_pred             ----------------------------hCCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHCCCCCCCC---CCCCcc
Q 022605          126 ----------------------------SKKANIDARDRWGSTAAADAKYYGNV-EVYNILKARGAKVPKT---KRTPMT  173 (294)
Q Consensus       126 ----------------------------~~gad~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~ga~~~~~---~~t~l~  173 (294)
                                                  +.|++++..|..|.||||+|+..++. +++++|++.|++++..   |.||||
T Consensus       233 ~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh  312 (682)
T PHA02876        233 NRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLY  312 (682)
T ss_pred             cCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence                                        34455666666677777777776664 4667777777766433   667777


Q ss_pred             ccCCCC----CcccccCcchhhhhcccCCCCCceeeeeec-CchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchh
Q 022605          174 VANPRE----VPEYELNPLELQVRKADGITKGSYQVAKWN-GTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVV  248 (294)
Q Consensus       174 ~a~~~~----~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv  248 (294)
                      +|+..+    .+++|+..+ .+++..+..|.||||.|+.. ++.+++++|++.+......+..|.||||+|+..++.+++
T Consensus       313 ~Aa~~g~~~~~v~~Ll~~g-adin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv  391 (682)
T PHA02876        313 LMAKNGYDTENIRTLIMLG-ADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVII  391 (682)
T ss_pred             HHHHhCCCHHHHHHHHHcC-CCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHH
Confidence            765432    233333322 33444444555555555543 234555555555544444444555555555555555555


Q ss_pred             hhhhhhcCCCCeE---------EE-----------------EecCCCCCCCccccccccccc
Q 022605          249 QFVGAVTQNIPMM---------IV-----------------LEYHAKVSMPITPFLTLSFHK  284 (294)
Q Consensus       249 ~~L~~~~~~~~l~---------~~-----------------~e~~~~g~l~~t~l~~a~~n~  284 (294)
                      ++|...+++....         ++                 .+....+..|.||||+|+.++
T Consensus       392 ~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        392 NTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKN  453 (682)
T ss_pred             HHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhC
Confidence            5555444432110         00                 013345667888888888754

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.4e-31  Score=256.89  Aligned_cols=241  Identities=17%  Similarity=0.106  Sum_probs=137.3

Q ss_pred             CCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHH-----------------------
Q 022605           36 DPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLL-----------------------   92 (294)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll-----------------------   92 (294)
                      +..+.++++.++..|+.+.++.++..+......+.+|.||||.|+..|+.+++++|+                       
T Consensus       175 d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~  254 (682)
T PHA02876        175 DIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLE  254 (682)
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHH
Confidence            344566777777777777777776666555544445555555555544444433322                       


Q ss_pred             ------hcCCCCCCCCCCCCcHHHHHHHcCcH-HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHCCCC-
Q 022605           93 ------NEGSDVNSIDLDGRTALHIAACEGHV-EVVKLLLSKKANIDARDRWGSTAAADAKYYG-NVEVYNILKARGAK-  163 (294)
Q Consensus        93 ------~~g~~~~~~~~~g~TpLh~A~~~g~~-~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~-  163 (294)
                            +.|++++..|..|.||||+|+..++. +++++|++.|++++..|..|.||||+|+..| ..+++++|+..|++ 
T Consensus       255 ~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi  334 (682)
T PHA02876        255 TSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV  334 (682)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC
Confidence                  23334444444455555555555443 3455555555555555555555555555544 24444555544444 


Q ss_pred             ---------------------------------CCCC---CCCCccccCCC---CCcccccCcchhhhhcccCCCCCcee
Q 022605          164 ---------------------------------VPKT---KRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQ  204 (294)
Q Consensus       164 ---------------------------------~~~~---~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~  204 (294)
                                                       ++..   |.||||+|+..   +++++|+..+ .+++..+..|.||||
T Consensus       335 n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~g-ad~~~~~~~g~T~Lh  413 (682)
T PHA02876        335 NAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYG-ADIEALSQKIGTALH  413 (682)
T ss_pred             CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCccccCCCCCchHH
Confidence                                             4322   44555554332   2333444332 333344444455555


Q ss_pred             eeeecCc-hhhhHhhhccCCCChHhhhhhhhHHHHHHHcC-CCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccc
Q 022605          205 VAKWNGT-KVWVKILDKESHKDPERINAFTHELTIVEKAR-HPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSF  282 (294)
Q Consensus       205 ~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~-~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~  282 (294)
                      +|+..++ ..++++|++.|+.....+..|.||||+|+..+ +.+++++|...+++.        ...+..|.|||++|+.
T Consensus       414 ~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~--------n~~d~~g~tpl~~a~~  485 (682)
T PHA02876        414 FALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV--------NAINIQNQYPLLIALE  485 (682)
T ss_pred             HHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCC--------CCCCCCCCCHHHHHHH
Confidence            5544333 34455555555555556678899999999876 679999999988864        4467888999999998


Q ss_pred             ccc
Q 022605          283 HKQ  285 (294)
Q Consensus       283 n~~  285 (294)
                      ++.
T Consensus       486 ~~~  488 (682)
T PHA02876        486 YHG  488 (682)
T ss_pred             hCC
Confidence            764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=3.4e-31  Score=241.04  Aligned_cols=234  Identities=22%  Similarity=0.131  Sum_probs=135.2

Q ss_pred             CCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 022605           49 QSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK  128 (294)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g  128 (294)
                      ....+.+..++..+......+..+.+|+|+|+..|+.++++.|+++|+|+|..|..|.||||+||..++.|..+.|++.|
T Consensus        98 ~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~  177 (929)
T KOG0510|consen   98 YNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKG  177 (929)
T ss_pred             cchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcC
Confidence            33445555556666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-----CCCCCC---CCCCCCccccCCCCCcccc---cCcc---------
Q 022605          129 ANIDARDRWGSTAAADAKYYGNVEVYNILKA-----RGAKVP---KTKRTPMTVANPREVPEYE---LNPL---------  188 (294)
Q Consensus       129 ad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-----~ga~~~---~~~~t~l~~a~~~~~~~~l---~~~~---------  188 (294)
                      +|+...|.+|++|+|.|+..|..++.+..+.     ++..+|   ..+.||||.|...+..+.+   +..+         
T Consensus       178 a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~  257 (929)
T KOG0510|consen  178 ADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLD  257 (929)
T ss_pred             CCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhH
Confidence            6666666666666666666666666666665     333332   2256666666554332211   1111         


Q ss_pred             -----hhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEE
Q 022605          189 -----ELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIV  263 (294)
Q Consensus       189 -----~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~  263 (294)
                           ...++..|..|.||||+|++.|++++++.|+..|++...+++++.||+|.|+..|+.+.|+-|+. ..+..    
T Consensus       258 ~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~r----  332 (929)
T KOG0510|consen  258 AMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTR----  332 (929)
T ss_pred             HHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHh-CcCcc----
Confidence                 11234455566666666666666666666666666666555666666666666666666666655 11110    


Q ss_pred             EecCCCCCCCccccccccccccccc
Q 022605          264 LEYHAKVSMPITPFLTLSFHKQTHT  288 (294)
Q Consensus       264 ~e~~~~g~l~~t~l~~a~~n~~~~~  288 (294)
                       -....+-.|.||||+|+.+|+..+
T Consensus       333 -llne~D~~g~tpLHlaa~~gH~~v  356 (929)
T KOG0510|consen  333 -LLNESDLHGMTPLHLAAKSGHDRV  356 (929)
T ss_pred             -ccccccccCCCchhhhhhcCHHHH
Confidence             122233445566666665555544

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.1e-30  Score=241.72  Aligned_cols=203  Identities=13%  Similarity=0.089  Sum_probs=176.2

Q ss_pred             ccccCCCCCCCCCCCCCCCchhHHHHHHHc---CCHHHHHHHHhcCCCC-CCCCCCCCcHHHHHHHc--CcHHHHHHHHh
Q 022605           53 DPIRRSPVQDELTVPENLDSTMQLLFMACR---GDVKGVEDLLNEGSDV-NSIDLDGRTALHIAACE--GHVEVVKLLLS  126 (294)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~-~~~~~~g~TpLh~A~~~--g~~~~v~~Ll~  126 (294)
                      +.++.+++.+...+..+..|.||||.|+..   |+.++|++|+++|+|+ +.+|..|.||||+|+..  ++.++|++|++
T Consensus        89 ~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~  168 (494)
T PHA02989         89 KIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLS  168 (494)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHH
Confidence            456778888888888999999999988765   6899999999999999 79999999999998764  68999999999


Q ss_pred             CCCCCCC-CCCCCCCHHHHHHHcC----CHHHHHHHHHCCCCCCCC---CCCCccccCCC---------CCcccccCcch
Q 022605          127 KKANIDA-RDRWGSTAAADAKYYG----NVEVYNILKARGAKVPKT---KRTPMTVANPR---------EVPEYELNPLE  189 (294)
Q Consensus       127 ~gad~~~-~~~~g~t~L~~A~~~g----~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---------~~~~~l~~~~~  189 (294)
                      +|+|++. .+..|.||||+|+..+    +.+++++|+++|++++..   +.|+++.+...         +++++++.  .
T Consensus       169 ~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~--~  246 (494)
T PHA02989        169 FGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK--Y  246 (494)
T ss_pred             cCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh--C
Confidence            9999998 6889999999998764    899999999999999755   78888865332         23344443  2


Q ss_pred             hhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCC
Q 022605          190 LQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       190 ~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~  257 (294)
                      ++++..+..|.||||+|+..|+.+++++|++.|++....+..|.||+|+|+..++.+++++|.....+
T Consensus       247 advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        247 IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG  314 (494)
T ss_pred             CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            67788889999999999999999999999999998888888999999999999999999999876544

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-30  Score=237.54  Aligned_cols=236  Identities=18%  Similarity=0.145  Sum_probs=183.0

Q ss_pred             CCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHh-----cCCCCCCCCCCCCcHHH
Q 022605           36 DPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLN-----EGSDVNSIDLDGRTALH  110 (294)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-----~g~~~~~~~~~g~TpLh  110 (294)
                      +....++++.++..++.+..+.++..+...-..+.+|.+|+|.|+.+|..++.+..+.     .+..+|.-+..|.||||
T Consensus       151 de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLh  230 (929)
T KOG0510|consen  151 DENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLH  230 (929)
T ss_pred             ccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchh
Confidence            3344455566666666664455555666666666667777777777777777777765     44566666677788888


Q ss_pred             HHHHcCcHHHHHHHHhCCCC---------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCc
Q 022605          111 IAACEGHVEVVKLLLSKKAN---------------IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPM  172 (294)
Q Consensus       111 ~A~~~g~~~~v~~Ll~~gad---------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l  172 (294)
                      .|+..|++++++.++++|+.               +|..|++|.||||+|+..|+.++++.|+..|++++.+   +.|||
T Consensus       231 lAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spL  310 (929)
T KOG0510|consen  231 LAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPL  310 (929)
T ss_pred             hhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCch
Confidence            88888888888888887653               2456889999999999999999999999999998644   89999


Q ss_pred             cccCCCC---CcccccC-cchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCCh---HhhhhhhhHHHHHHHcCCC
Q 022605          173 TVANPRE---VPEYELN-PLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDP---ERINAFTHELTIVEKARHP  245 (294)
Q Consensus       173 ~~a~~~~---~~~~l~~-~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~~t~l~~a~~~~~~  245 (294)
                      |.|+..+   .++-|+. .....++..|..|.||||+|+..|+..+++.|+..|+...   ..+.+|.||||.|++.|++
T Consensus       311 H~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  311 HFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNT  390 (929)
T ss_pred             HHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccH
Confidence            9997763   4555565 4456788889999999999999999999999999988666   4477899999999999999


Q ss_pred             chhhhhhhhcCCCCeEEEEecCCCCCCCcccccc
Q 022605          246 NVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLT  279 (294)
Q Consensus       246 ~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~  279 (294)
                      .+|++|.+.+++.        ..++..|.++|++
T Consensus       391 ~av~~Li~~Ga~I--------~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  391 SAVQKLISHGADI--------GVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHHHHHcCCce--------eeccccccccccc
Confidence            9999999999863        3455566666664

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=1.1e-29  Score=226.75  Aligned_cols=203  Identities=23%  Similarity=0.227  Sum_probs=179.4

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcC
Q 022605           72 STMQLLFMACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD-RWGSTAAADAKYYG  149 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~-~~g~t~L~~A~~~g  149 (294)
                      ..+.++.|+.+|.++.|+.|++. |.+++..|.+|.|+|||||.+++++++++|+++|||||... .-+.||||+|+++|
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            34568999999999999999998 99999999999999999999999999999999999999998 77899999999999


Q ss_pred             CHHHHHHHHHCCCCCC---CCCCCCccccCCCC---CcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCC
Q 022605          150 NVEVYNILKARGAKVP---KTKRTPMTVANPRE---VPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESH  223 (294)
Q Consensus       150 ~~~~v~~Ll~~ga~~~---~~~~t~l~~a~~~~---~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~  223 (294)
                      +..+|.+|+++|||++   .+|.+|+|+|+..+   .+-|++..+ .+++..|..|.||||+|+++|....+..|++.++
T Consensus       124 ~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~-~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a  202 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKG-ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGA  202 (600)
T ss_pred             cHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhc-ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcc
Confidence            9999999999999985   55999999998764   455666666 8889999999999999999999887888998888


Q ss_pred             CChHhh-hhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccc
Q 022605          224 KDPERI-NAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFH  283 (294)
Q Consensus       224 ~~~~~~-~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n  283 (294)
                      .....+ ++|.||||+|+..|+..++.++.+.+.+        +...+.-|.||+.+|...
T Consensus       203 ~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~--------~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  203 SLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD--------LDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccccccCCchHHHHHhcCCcceEehhhhcCCc--------ccccccCCCCHHHHHHHh
Confidence            777776 7899999999999999999966665555        333444489999999766

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=5.4e-30  Score=236.86  Aligned_cols=221  Identities=13%  Similarity=0.135  Sum_probs=185.8

Q ss_pred             CCCCCccccccC-----CCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcC---CHHHHHHHHhcCCCCCCCCCCCCcH
Q 022605           37 PRRNNMRFSFGR-----QSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRG---DVKGVEDLLNEGSDVNSIDLDGRTA  108 (294)
Q Consensus        37 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~~~~g~Tp  108 (294)
                      ..+.++++.+..     .+..+.++.++..+...+..+..|.||||+|+..+   +.+++++|+++|++++.+|..|.||
T Consensus        69 ~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tp  148 (489)
T PHA02798         69 NEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTM  148 (489)
T ss_pred             CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcH
Confidence            344455544332     23467788888889998999999999999999976   7899999999999999999999999


Q ss_pred             HHHHHHcCc---HHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHc----CCHHHHHHHHHCCCCCCCC---CCCCcc----
Q 022605          109 LHIAACEGH---VEVVKLLLSKKANIDARD-RWGSTAAADAKYY----GNVEVYNILKARGAKVPKT---KRTPMT----  173 (294)
Q Consensus       109 Lh~A~~~g~---~~~v~~Ll~~gad~~~~~-~~g~t~L~~A~~~----g~~~~v~~Ll~~ga~~~~~---~~t~l~----  173 (294)
                      ||+|+..++   .+++++|+++|+|++..+ ..|.||||.++..    ++.+++++|+++|++++..   +.++++    
T Consensus       149 L~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~  228 (489)
T PHA02798        149 LQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLN  228 (489)
T ss_pred             HHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHH
Confidence            999999998   999999999999999885 5789999998765    4799999999999998754   677765    


Q ss_pred             ---ccCC---CCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCch
Q 022605          174 ---VANP---REVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNV  247 (294)
Q Consensus       174 ---~a~~---~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~i  247 (294)
                         ++..   ..++.+++.  ..+++..+..|.||||.|+..|+.+++++|++.|++....+..|.||+++|++.++.++
T Consensus       229 ~l~~~~~~~~~~i~~~l~~--~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~i  306 (489)
T PHA02798        229 SLLYDNKRFKKNILDFIFS--YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFI  306 (489)
T ss_pred             HHHhhcccchHHHHHHHHh--cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHH
Confidence               1222   233444443  26788888999999999999999999999999999988888999999999999999999


Q ss_pred             hhhhhhhcCCCC
Q 022605          248 VQFVGAVTQNIP  259 (294)
Q Consensus       248 v~~L~~~~~~~~  259 (294)
                      ++.|...+.++.
T Consensus       307 v~~lL~~~~~~~  318 (489)
T PHA02798        307 FNSILNKKPNKN  318 (489)
T ss_pred             HHHHHccCCCHH
Confidence            999988776653

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3.6e-29  Score=205.81  Aligned_cols=177  Identities=14%  Similarity=0.139  Sum_probs=141.9

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC--cHHHHHHHHhCCCCCCCCC-CCCCCHHHHH
Q 022605           69 NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEG--HVEVVKLLLSKKANIDARD-RWGSTAAADA  145 (294)
Q Consensus        69 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~~-~~g~t~L~~A  145 (294)
                      ...+.||||+|+..|+.++|+.|++.   ++..|..|.||||+|+..+  +.+++++|+++|++++.++ ..|+||||+|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            45578999999999999999999975   4667888999999999854  8999999999999999987 5899999998


Q ss_pred             HHc---CCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeee--cCchhhhHhhhc
Q 022605          146 KYY---GNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKW--NGTKVWVKILDK  220 (294)
Q Consensus       146 ~~~---g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~--~g~~~~v~~Ll~  220 (294)
                      +..   ++.+++++|+++|+++|..                            +..|.||||.|+.  .++.+++++|++
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~----------------------------d~~G~TpLh~a~~~~~~~~~iv~~Li~  146 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEE----------------------------DEDGKNLLHMYMCNFNVRINVIKLLID  146 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCc----------------------------CCCCCCHHHHHHHhccCCHHHHHHHHH
Confidence            764   4799999999999987543                            4455666666653  457888888888


Q ss_pred             cCCCChHhhhhhhhHHHH-HHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccccc
Q 022605          221 ESHKDPERINAFTHELTI-VEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHK  284 (294)
Q Consensus       221 ~~~~~~~~~~~~~t~l~~-a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~  284 (294)
                      .+++....+..|.||+|. ++..++.+++++|...+.+        ....+..|.|||++|..++
T Consensus       147 ~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad--------i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        147 SGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGID--------INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             cCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC--------CCCCCCCCCCHHHHHhhhh
Confidence            887777777778888885 5567788888888887775        3446677888888887654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=2.2e-29  Score=216.95  Aligned_cols=185  Identities=23%  Similarity=0.259  Sum_probs=123.7

Q ss_pred             CCCCCchhHHHHHHHcCCHHHHHHHHhc-CCCCCCC--------CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCC
Q 022605           67 PENLDSTMQLLFMACRGDVKGVEDLLNE-GSDVNSI--------DLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRW  137 (294)
Q Consensus        67 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~--------~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~  137 (294)
                      ....+|.|||.+||++|+.++|++|+++ ++++...        ..+|-+||-.|+..||+++|+.|+++|++||....-
T Consensus        37 ~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~T  116 (615)
T KOG0508|consen   37 GEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRT  116 (615)
T ss_pred             ccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccccccc
Confidence            4456677888888888888888888884 4554322        246778888888888888888888888888888888


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCc
Q 022605          138 GSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGT  211 (294)
Q Consensus       138 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~  211 (294)
                      ..|||--||..|+.++|+||+++|+|++..   |.|.|++||.+   +++++|++.+ .+++.++..|.|+||.++..|+
T Consensus       117 NStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~g-ADvn~ks~kGNTALH~caEsG~  195 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQG-ADVNAKSYKGNTALHDCAESGS  195 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhC-CCcchhcccCchHHHhhhhccc
Confidence            888888888888888888888888887433   55555555443   2334444332 4445555555666666666666


Q ss_pred             hhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhh
Q 022605          212 KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGA  253 (294)
Q Consensus       212 ~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~  253 (294)
                      .+++++|++.++ ...++..|.|||..|+..|+.+||++|..
T Consensus       196 vdivq~Ll~~ga-~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  196 VDIVQLLLKHGA-KIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHHHHHhCCc-eeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            666666664443 22333445566666666666666666554

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=9.2e-30  Score=219.27  Aligned_cols=185  Identities=22%  Similarity=0.231  Sum_probs=161.4

Q ss_pred             CCCCCCCCccccccCCCCCccccCCCCCCCCC---------CCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC
Q 022605           34 SFDPRRNNMRFSFGRQSSLDPIRRSPVQDELT---------VPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLD  104 (294)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~  104 (294)
                      +..+++..++..+++.|..+.++.+++.-...         +....+|-+||..|+..||+++|+.|+++|+++|.....
T Consensus        37 ~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~T  116 (615)
T KOG0508|consen   37 GEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRT  116 (615)
T ss_pred             ccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccccccc
Confidence            44567778999999999998888776632211         234567889999999999999999999999999998888


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---
Q 022605          105 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---  178 (294)
Q Consensus       105 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---  178 (294)
                      ..|||--||.-|++++|+||+++|+|++..|+.|.|+||+||..|+.+|++||++.|+|+|.+   |.|+||.+++.   
T Consensus       117 NStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~v  196 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSV  196 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccH
Confidence            999999999999999999999999999999999999999999999999999999999999866   99999999865   


Q ss_pred             CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhc
Q 022605          179 EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK  220 (294)
Q Consensus       179 ~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~  220 (294)
                      +++++|+..+.  .-..++.|.|||..|+..|+.++|.+|++
T Consensus       197 divq~Ll~~ga--~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  197 DIVQLLLKHGA--KIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHHHHhCCc--eeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            66777776652  22346679999999999999999999996

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=8.2e-29  Score=203.65  Aligned_cols=176  Identities=15%  Similarity=0.082  Sum_probs=151.3

Q ss_pred             CCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcC--CHHHHHHHHhcCCCCCCCC-CCCCcHHHHHH
Q 022605           37 PRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRG--DVKGVEDLLNEGSDVNSID-LDGRTALHIAA  113 (294)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g--~~~~v~~Ll~~g~~~~~~~-~~g~TpLh~A~  113 (294)
                      ....++++.++..++.+.++.++..   ....+..|.||||+|+..+  +.+++++|+++|+++|.++ ..|.||||+|+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            3456778888889999988887653   3456788999999999854  8999999999999999997 58999999988


Q ss_pred             Hc---CcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcc
Q 022605          114 CE---GHVEVVKLLLSKKANIDARDRWGSTAAADAKY--YGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPL  188 (294)
Q Consensus       114 ~~---g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~  188 (294)
                      ..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|++.|++++..                     
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~---------------------  154 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNK---------------------  154 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc---------------------
Confidence            64   47999999999999999999999999999986  46899999999999887443                     


Q ss_pred             hhhhhcccCCCCCceee-eeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcC
Q 022605          189 ELQVRKADGITKGSYQV-AKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKAR  243 (294)
Q Consensus       189 ~~~~~~~~~~~~t~l~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  243 (294)
                             +..|.||||. |+..++.+++++|++.|......+..|.||+++|..++
T Consensus       155 -------d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        155 -------DFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             -------cCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence                   5567889985 56778999999999999888778889999999998764

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.95  E-value=7.2e-30  Score=244.76  Aligned_cols=251  Identities=18%  Similarity=0.115  Sum_probs=212.0

Q ss_pred             CCCCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 022605           33 SSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIA  112 (294)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A  112 (294)
                      ...+.+..+..+.++..+..+.++-++..+...+..+..|.||||.|+.+++..+|+.++++|++++..+..|.||+|+|
T Consensus       368 ~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhva  447 (1143)
T KOG4177|consen  368 RQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVA  447 (1143)
T ss_pred             CcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhh
Confidence            34445566666777778888888888888888888888888999999999999999888888888888888889999999


Q ss_pred             HHcC-cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCCCCc---cccc
Q 022605          113 ACEG-HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVP---EYEL  185 (294)
Q Consensus       113 ~~~g-~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~~~~---~~l~  185 (294)
                      +..| ..+++..+++.|+++|.....|.||||+|++.|+.+++..|++.++..+..   +-+++|.+...+.+   +.++
T Consensus       448 a~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~  527 (1143)
T KOG4177|consen  448 AKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILL  527 (1143)
T ss_pred             hhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHh
Confidence            8888 888888888889899888888999999999999999999998888665443   88888888776544   3333


Q ss_pred             CcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEe
Q 022605          186 NPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE  265 (294)
Q Consensus       186 ~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e  265 (294)
                      .. +.+.+...+.+.||||.|+..|+..+|++|++++++....++.|+||||.|+..|+.+|+.+|...++++       
T Consensus       528 ~~-ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v-------  599 (1143)
T KOG4177|consen  528 EH-GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASV-------  599 (1143)
T ss_pred             hc-CCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCC-------
Confidence            33 3677778888999999999999999999999999999999999999999999999999999999999985       


Q ss_pred             cCCCCCCCcccccccccccccccCCCC
Q 022605          266 YHAKVSMPITPFLTLSFHKQTHTSGGK  292 (294)
Q Consensus       266 ~~~~g~l~~t~l~~a~~n~~~~~~~~~  292 (294)
                       ....-.+.|||++|+.++.++++..+
T Consensus       600 -na~d~~g~TpL~iA~~lg~~~~~k~l  625 (1143)
T KOG4177|consen  600 -NAADLDGFTPLHIAVRLGYLSVVKLL  625 (1143)
T ss_pred             -CcccccCcchhHHHHHhcccchhhHH
Confidence             44667788999999999999987654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=9.6e-29  Score=233.25  Aligned_cols=221  Identities=14%  Similarity=0.054  Sum_probs=173.3

Q ss_pred             ccccCCCCCCCCCCCCCCCchhHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH----HHHHHHH
Q 022605           53 DPIRRSPVQDELTVPENLDSTMQLLFMACR---GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHV----EVVKLLL  125 (294)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~----~~v~~Ll  125 (294)
                      +.++.++..+......|.+|.||||+||..   |+.++|++||++|++++.++..|+||||+|+..|+.    ++++.|+
T Consensus        13 ~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll   92 (661)
T PHA02917         13 DELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALL   92 (661)
T ss_pred             HHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHH
Confidence            455666767777777799999999998665   889999999999999999999999999999999985    4567888


Q ss_pred             hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCcccc--CC---CCCcccccCcchhhhhccc-
Q 022605          126 SKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVA--NP---REVPEYELNPLELQVRKAD-  196 (294)
Q Consensus       126 ~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a--~~---~~~~~~l~~~~~~~~~~~~-  196 (294)
                      +.+..++..+.  .+++|+|+..++.++|++|+++|+++|..   |+|||+.+  +.   .+++++|++.+ .+++..+ 
T Consensus        93 ~~~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~G-a~vn~~d~  169 (661)
T PHA02917         93 EATGYSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENG-CSVLYEDE  169 (661)
T ss_pred             hccCCCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcC-CCcccccc
Confidence            87554555442  36778899999999999999999999764   99999954  22   37888999876 3443222 


Q ss_pred             --CCC-----------CCceeeeee-----------cCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCC--chhhh
Q 022605          197 --GIT-----------KGSYQVAKW-----------NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHP--NVVQF  250 (294)
Q Consensus       197 --~~~-----------~t~l~~A~~-----------~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~--~iv~~  250 (294)
                        ..|           .||||+|+.           .++.++|++|++.|++....+..|.||||+|+..|+.  +||++
T Consensus       170 ~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~  249 (661)
T PHA02917        170 DDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKL  249 (661)
T ss_pred             ccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHH
Confidence              223           599999975           5689999999999998888889999999999999996  69999


Q ss_pred             hhhhcCCCCeEEEEecCCCCCCCcccccccc
Q 022605          251 VGAVTQNIPMMIVLEYHAKVSMPITPFLTLS  281 (294)
Q Consensus       251 L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~  281 (294)
                      |.. +.+..-.    -...+..+.||+++|+
T Consensus       250 Li~-g~d~~~~----~~~~~~~~~~~~~~a~  275 (661)
T PHA02917        250 LMK-GIDNTAY----SYIDDLTCCTRGIMAD  275 (661)
T ss_pred             HHh-CCccccc----ccccCcccccchHHHH
Confidence            964 5442110    1124556667777777

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.2e-28  Score=232.58  Aligned_cols=232  Identities=12%  Similarity=-0.064  Sum_probs=176.0

Q ss_pred             cccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHH--HcCCHHHHHHHHhcCCCCCCCCC---CC-----------CcH
Q 022605           45 SFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMA--CRGDVKGVEDLLNEGSDVNSIDL---DG-----------RTA  108 (294)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa--~~g~~~~v~~Ll~~g~~~~~~~~---~g-----------~Tp  108 (294)
                      .++..++.+.++.++..+...+..+..|.||||.|+  ..|+.++|++|+++|+++|.+|.   .|           .||
T Consensus       109 ~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~  188 (661)
T PHA02917        109 MKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTV  188 (661)
T ss_pred             HHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccH
Confidence            345566778888899899999999999999999654  47899999999999999987653   34           599


Q ss_pred             HHHHHH-----------cCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHCCCCCCC-------CC
Q 022605          109 LHIAAC-----------EGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNV--EVYNILKARGAKVPK-------TK  168 (294)
Q Consensus       109 Lh~A~~-----------~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~ga~~~~-------~~  168 (294)
                      ||+|+.           .++.++|++|+++|+|+|..|..|+||||+|+..|+.  ++|++|++ |++++.       .+
T Consensus       189 L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~  267 (661)
T PHA02917        189 LHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTC  267 (661)
T ss_pred             HHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCccc
Confidence            999986           5689999999999999999999999999999999985  78999875 765531       13


Q ss_pred             CCCccccCC---------------------------------------------------------------------CC
Q 022605          169 RTPMTVANP---------------------------------------------------------------------RE  179 (294)
Q Consensus       169 ~t~l~~a~~---------------------------------------------------------------------~~  179 (294)
                      .+|+++|+.                                                                     .+
T Consensus       268 ~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  347 (661)
T PHA02917        268 CTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIP  347 (661)
T ss_pred             ccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHH
Confidence            333333220                                                                     00


Q ss_pred             CcccccCcc-----------------------------hhhhhcccCCCCCceeeeeecC--------------------
Q 022605          180 VPEYELNPL-----------------------------ELQVRKADGITKGSYQVAKWNG--------------------  210 (294)
Q Consensus       180 ~~~~l~~~~-----------------------------~~~~~~~~~~~~t~l~~A~~~g--------------------  210 (294)
                      ++++|++.+                             +.++...+..|.||||.|++.+                    
T Consensus       348 ~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~  427 (661)
T PHA02917        348 LVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSY  427 (661)
T ss_pred             HHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhh
Confidence            122332221                             1122333445889999876432                    


Q ss_pred             ---chhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccc-ccc
Q 022605          211 ---TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSF-HKQ  285 (294)
Q Consensus       211 ---~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~-n~~  285 (294)
                         ..+++++|++.|++...++..|+||||+|+..++.+++++|...+++        ....+..|.||||+|+. +++
T Consensus       428 ~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAd--------in~~d~~G~T~L~~A~~~~~~  498 (661)
T PHA02917        428 ACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSD--------VNIRSNNGYTCIAIAINESRN  498 (661)
T ss_pred             hhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCC--------CCCCCCCCCCHHHHHHHhCCC
Confidence               35677999999988888888899999999999999999999998886        45567888999999986 444

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.1e-27  Score=212.15  Aligned_cols=193  Identities=10%  Similarity=-0.016  Sum_probs=164.8

Q ss_pred             CCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCC------CCCCCCCcHHHHHHH--cCcHHHHHHHHhCCCC
Q 022605           59 PVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVN------SIDLDGRTALHIAAC--EGHVEVVKLLLSKKAN  130 (294)
Q Consensus        59 ~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~------~~~~~g~TpLh~A~~--~g~~~~v~~Ll~~gad  130 (294)
                      +..+...+....++     +|+..+..+++++|+.+|+++|      .++..++|+||.|+.  .|+.++|++|+++|||
T Consensus        69 ~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GAD  143 (437)
T PHA02795         69 RIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAV  143 (437)
T ss_pred             HHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCC
Confidence            33444444444444     8999999999999999999998      788899999999999  9999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---------CCCCccccCCC---CCcccccCcchhhhhcccCC
Q 022605          131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---------KRTPMTVANPR---EVPEYELNPLELQVRKADGI  198 (294)
Q Consensus       131 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---------~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~  198 (294)
                      ++..  .+.||+|.|+..++.+++++|+++|++.+..         +.|++|.|+..   +++++|+..+ .+++..+..
T Consensus       144 In~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G-ADIN~kD~~  220 (437)
T PHA02795        144 IYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI-EDINQLDAG  220 (437)
T ss_pred             CCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc-CCcCcCCCC
Confidence            9985  4589999999999999999999999864322         55666666554   6778888766 788888999


Q ss_pred             CCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCC--------CchhhhhhhhcCCCC
Q 022605          199 TKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARH--------PNVVQFVGAVTQNIP  259 (294)
Q Consensus       199 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~--------~~iv~~L~~~~~~~~  259 (294)
                      |.||||+|+..|+.+++++|++.|+.....+..|.||||+|+..|+        .+++++|...+++.+
T Consensus       221 G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        221 GRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999888888999999999999984        589999988877653

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.94  E-value=4.9e-27  Score=191.35  Aligned_cols=230  Identities=26%  Similarity=0.348  Sum_probs=184.0

Q ss_pred             cccccCCCCCccccCCCCCCCC-CCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 022605           43 RFSFGRQSSLDPIRRSPVQDEL-TVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVV  121 (294)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v  121 (294)
                      .|.+++.|+.-.++..+....- .+..|..|.+||||||..|+..+|+.|+.+|+.+|..+....||||+|+..||.++|
T Consensus         4 if~wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdiv   83 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIV   83 (448)
T ss_pred             hhhhhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHH
Confidence            5788899998888766665544 456788899999999999999999999999999999998889999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCccccCCC----------------CCcc
Q 022605          122 KLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVANPR----------------EVPE  182 (294)
Q Consensus       122 ~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~t~l~~a~~~----------------~~~~  182 (294)
                      +.|++..+|+|+.+..|.|||||||+.|+..+.+-|+..|+-+   |..|.||+..|...                ..+.
T Consensus        84 qkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nrip  163 (448)
T KOG0195|consen   84 QKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNRIP  163 (448)
T ss_pred             HHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCccc
Confidence            9999999999999999999999999999999999999999987   55699999877210                0000


Q ss_pred             c----------------cc-----CcchhhhhcccCC-CCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHH
Q 022605          183 Y----------------EL-----NPLELQVRKADGI-TKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVE  240 (294)
Q Consensus       183 ~----------------l~-----~~~~~~~~~~~~~-~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~  240 (294)
                      +                |.     +.+.+++..+-.. ...-+...-++|+--+++.|- -.........++.+..-...
T Consensus       164 fkdt~wkgtktr~rdatlsr~~gid~~~lnl~tkl~e~hsgelwrgrwqgndivakil~-vr~~t~risrdfneefp~lr  242 (448)
T KOG0195|consen  164 FKDTTWKGTKTRTRDATLSRYTGIDVSSLNLITKLAESHSGELWRGRWQGNDIVAKILN-VREVTARISRDFNEEFPALR  242 (448)
T ss_pred             ccccccccccccccccccccccCcchhhhhhhhhhccCCCcccccccccCcchhhhhhh-hhhcchhhcchhhhhCccee
Confidence            0                00     0011111111111 123466677778877777774 34455566677888888888


Q ss_pred             HcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          241 KARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       241 ~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      ...|++|+..|.+|.+.|.+.++..|++.|+++
T Consensus       243 ifshpnilpvlgacnsppnlv~isq~mp~gsly  275 (448)
T KOG0195|consen  243 IFSHPNILPVLGACNSPPNLVIISQYMPFGSLY  275 (448)
T ss_pred             eecCCchhhhhhhccCCCCceEeeeeccchHHH
Confidence            899999999999999999999999999999987

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=4.8e-26  Score=221.86  Aligned_cols=171  Identities=24%  Similarity=0.215  Sum_probs=127.3

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 022605           68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY  147 (294)
Q Consensus        68 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~  147 (294)
                      .+.++.++||.||..|+.++++.|++.|+|+|..|..|.||||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|+.
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~  600 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS  600 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence            34456799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCC-CCCCccccCCCC---CcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCC
Q 022605          148 YGNVEVYNILKARGAKVPKT-KRTPMTVANPRE---VPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESH  223 (294)
Q Consensus       148 ~g~~~~v~~Ll~~ga~~~~~-~~t~l~~a~~~~---~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~  223 (294)
                      .|+.+++++|++.++..+.. +.++||+|+..+   .+++|++.+ .+++..+..|.||||.|+..|+.+++++|++.|+
T Consensus       601 ~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~G-adin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        601 AKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQG-LNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             hCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            99999999999887665432 445555554432   233343332 3444445555555555555555555555555554


Q ss_pred             CChHhhhhh-hhHHHHH
Q 022605          224 KDPERINAF-THELTIV  239 (294)
Q Consensus       224 ~~~~~~~~~-~t~l~~a  239 (294)
                      +....+..+ .+|.+.+
T Consensus       680 dv~~~~~~g~~t~~~l~  696 (823)
T PLN03192        680 DVDKANTDDDFSPTELR  696 (823)
T ss_pred             CCCCCCCCCCCCHHHHH
Confidence            444444333 4554444

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=4.1e-26  Score=179.06  Aligned_cols=203  Identities=20%  Similarity=0.117  Sum_probs=132.5

Q ss_pred             CCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 022605           37 PRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEG  116 (294)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g  116 (294)
                      |.+...+..++..++...+...+..+...+..+.-+++|+.+++...+++++..+.++  .+|..|+.|.|||+||+..|
T Consensus        94 p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G  171 (296)
T KOG0502|consen   94 PEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKG  171 (296)
T ss_pred             chhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcC
Confidence            3344444555555555555555555555555555555555555555555555544433  24455555566666666666


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhccc
Q 022605          117 HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKAD  196 (294)
Q Consensus       117 ~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~  196 (294)
                      ++++|++|++.|||++...+...|+|.+|+..|..++|++|+.++.|+                            +..|
T Consensus       172 ~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdV----------------------------NvyD  223 (296)
T KOG0502|consen  172 HIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDV----------------------------NVYD  223 (296)
T ss_pred             chHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc----------------------------ceec
Confidence            666666666666655555555555566666555566666665555554                            4456


Q ss_pred             CCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccc
Q 022605          197 GITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITP  276 (294)
Q Consensus       197 ~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~  276 (294)
                      -.|.|||-+|++.|+.+||+.|+..|++.....+.|+++++.|+..|+. +|+..+.....        ..-++++.+||
T Consensus       224 wNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~l--------kl~Q~~~~~~~  294 (296)
T KOG0502|consen  224 WNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHAL--------KLCQDSEKRTP  294 (296)
T ss_pred             cCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHH--------HHhhcccCCCC
Confidence            6788999999999999999999999999988889999999999999998 77766555443        23356666677


Q ss_pred             cc
Q 022605          277 FL  278 (294)
Q Consensus       277 l~  278 (294)
                      +|
T Consensus       295 ~~  296 (296)
T KOG0502|consen  295 LH  296 (296)
T ss_pred             CC
Confidence            65

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=7.1e-26  Score=209.72  Aligned_cols=187  Identities=14%  Similarity=0.043  Sum_probs=154.0

Q ss_pred             CCCCCCchhHHHHHHHcC---CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC--cHHHHHHHHhCCC--CCCCCCCCC
Q 022605           66 VPENLDSTMQLLFMACRG---DVKGVEDLLNEGSDVNSIDLDGRTALHIAACEG--HVEVVKLLLSKKA--NIDARDRWG  138 (294)
Q Consensus        66 ~~~~~~g~t~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~ga--d~~~~~~~g  138 (294)
                      ...|.+|.||||+|+..|   +.++|++||++|||++.+|..|+||||+|+..+  +.++|++|+++|+  +++..++.+
T Consensus        35 ~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~  114 (672)
T PHA02730         35 KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIN  114 (672)
T ss_pred             hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccC
Confidence            467888999999999997   599999999999999999999999999999976  7999999999965  457888889


Q ss_pred             CCHHHHHHH--cCCHHHHHHHHH-CCCCCCC--------CCCCCccccCCC---CCcccccCcchhhhh-------cccC
Q 022605          139 STAAADAKY--YGNVEVYNILKA-RGAKVPK--------TKRTPMTVANPR---EVPEYELNPLELQVR-------KADG  197 (294)
Q Consensus       139 ~t~L~~A~~--~g~~~~v~~Ll~-~ga~~~~--------~~~t~l~~a~~~---~~~~~l~~~~~~~~~-------~~~~  197 (294)
                      .+|||.++.  +++.++|++|++ .+++++.        .|.+|++++...   +++++|++.+. +..       ..+.
T Consensus       115 d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~-~v~g~~~~~~~~~~  193 (672)
T PHA02730        115 DFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSEC-YSTGYVFRSCMYDS  193 (672)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCC-cccccccccccccC
Confidence            999999998  889999999997 6677532        378999999764   77888988762 221       1233


Q ss_pred             CCCCceee-------eeecCchhhhHhhhccCCCChHhhhhhhhHHHH--HHHcCCCchhhhhhh
Q 022605          198 ITKGSYQV-------AKWNGTKVWVKILDKESHKDPERINAFTHELTI--VEKARHPNVVQFVGA  253 (294)
Q Consensus       198 ~~~t~l~~-------A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~--a~~~~~~~iv~~L~~  253 (294)
                      ...+|+.+       +...++.+++++|++.|++...++..|.||||+  +...++.|+|++|.+
T Consensus       194 ~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        194 DRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             CccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            33333322       257789999999999999888899999999995  555577999999998

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=1.5e-25  Score=215.19  Aligned_cols=223  Identities=22%  Similarity=0.177  Sum_probs=163.2

Q ss_pred             CCCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 022605           34 SFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAA  113 (294)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~  113 (294)
                      ..+.+....++..+....+..++-++..+......+..|.||||.|+..|+++++.+|+.+|+.++..+..|.||+|.|+
T Consensus       204 a~~~~~~tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA  283 (1143)
T KOG4177|consen  204 ASALNGFTPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAA  283 (1143)
T ss_pred             ccccCCCCchhhhccccccceeeeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhcccccCcccccccCcchhhh
Confidence            45567777888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCCCCccccc--Ccc
Q 022605          114 CEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYEL--NPL  188 (294)
Q Consensus       114 ~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~~~~~~l~--~~~  188 (294)
                      ..+..+++++|+++|+++...+....||+|+|...|+.++++++++.++.++..   |.||+|+++..+...+..  ...
T Consensus       284 ~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~  363 (1143)
T KOG4177|consen  284 RAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEH  363 (1143)
T ss_pred             ccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999999998887654   778888776544332111  001


Q ss_pred             hhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcC
Q 022605          189 ELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ  256 (294)
Q Consensus       189 ~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~  256 (294)
                      ...-......+.||+|.|+..|+.+++++++..+.......+.|.||+|.++..+++.+|+++...++
T Consensus       364 ~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA  431 (1143)
T KOG4177|consen  364 GAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGA  431 (1143)
T ss_pred             ccccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCC
Confidence            11122223333444444444444444444444444433344444444444444444444444444333

>PHA02730 ankyrin-like protein; Provisional

Probab=99.92  E-value=4.4e-25  Score=204.49  Aligned_cols=209  Identities=12%  Similarity=0.054  Sum_probs=172.7

Q ss_pred             CCCCCccccCCCCCCCCCCCCCCCchhHHHH--HHHcCCHHHHHHHHh--------------------------------
Q 022605           48 RQSSLDPIRRSPVQDELTVPENLDSTMQLLF--MACRGDVKGVEDLLN--------------------------------   93 (294)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~--Aa~~g~~~~v~~Ll~--------------------------------   93 (294)
                      .+.+.+.++.++..+...+..|.+|.||||+  |...|+.|+|++|++                                
T Consensus       211 ~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (672)
T PHA02730        211 ESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTP  290 (672)
T ss_pred             hccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhccc
Confidence            3455677788888899889999999999995  555688999999999                                


Q ss_pred             cCCCCCC--------------------CCCCCCc---------------------HHHHHHHcC---cHHHHHHHHhCCC
Q 022605           94 EGSDVNS--------------------IDLDGRT---------------------ALHIAACEG---HVEVVKLLLSKKA  129 (294)
Q Consensus        94 ~g~~~~~--------------------~~~~g~T---------------------pLh~A~~~g---~~~~v~~Ll~~ga  129 (294)
                      +|+|+..                    .+..|.+                     .||.-...+   +.+++++|+++||
T Consensus       291 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GA  370 (672)
T PHA02730        291 YNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGA  370 (672)
T ss_pred             CCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCC
Confidence            7888755                    4556655                     677777755   6899999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHCCCC--CC---CCCCCCccc---cCCC-------C-----Cccccc
Q 022605          130 NIDARDRWGSTAAADAKYYGN----VEVYNILKARGAK--VP---KTKRTPMTV---ANPR-------E-----VPEYEL  185 (294)
Q Consensus       130 d~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~--~~---~~~~t~l~~---a~~~-------~-----~~~~l~  185 (294)
                      |+|.. ..|.||||+|+..++    .+++++|+++|++  ++   ..|.||||.   +...       +     ++++|+
T Consensus       371 dIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LI  449 (672)
T PHA02730        371 TMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILS  449 (672)
T ss_pred             CCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHH
Confidence            99985 789999999998875    8999999999984  55   349999983   3211       2     257777


Q ss_pred             CcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhh-hhhhHHHHHHHc--CCCchhhhhhhhcCCC
Q 022605          186 NPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERIN-AFTHELTIVEKA--RHPNVVQFVGAVTQNI  258 (294)
Q Consensus       186 ~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~t~l~~a~~~--~~~~iv~~L~~~~~~~  258 (294)
                      ..+ .+++..+..|.||||+|+..++.+++++|++.|+.....+. .|.||+|+|+..  ++.+++++|++.+++.
T Consensus       450 s~G-ADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        450 KYM-DDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             hcc-cchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence            655 67888899999999999999999999999999988777775 589999999984  7899999999988764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.2e-25  Score=199.20  Aligned_cols=190  Identities=13%  Similarity=-0.060  Sum_probs=164.3

Q ss_pred             CHHH-HHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC------CCCCCCCCHHHHHHH--cCCHHHH
Q 022605           84 DVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID------ARDRWGSTAAADAKY--YGNVEVY  154 (294)
Q Consensus        84 ~~~~-v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~------~~~~~g~t~L~~A~~--~g~~~~v  154 (294)
                      -+++ -++++.+|+++|..+.+|     +|+..+..|++++|+++|++++      ..+..++|+||+++.  .|+.++|
T Consensus        60 ~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV  134 (437)
T PHA02795         60 PVDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIV  134 (437)
T ss_pred             HHHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHH
Confidence            3444 378999999999988877     9999999999999999999998      788899999999999  8999999


Q ss_pred             HHHHHCCCCCCCC-CCCCccccCC---CCCcccccCcchhhhhcc-----cCCCCCceeeeeecCchhhhHhhhccCCCC
Q 022605          155 NILKARGAKVPKT-KRTPMTVANP---REVPEYELNPLELQVRKA-----DGITKGSYQVAKWNGTKVWVKILDKESHKD  225 (294)
Q Consensus       155 ~~Ll~~ga~~~~~-~~t~l~~a~~---~~~~~~l~~~~~~~~~~~-----~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~  225 (294)
                      ++|+++||+++.. +.||+|.|+.   .+++++|+..+....+..     +..+.+++|.|+..++.+++++|++.|++.
T Consensus       135 ~~LI~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI  214 (437)
T PHA02795        135 DFMVDHGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI  214 (437)
T ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc
Confidence            9999999999874 7899999975   477889988773222222     123568899999999999999999999888


Q ss_pred             hHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccccccc
Q 022605          226 PERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQT  286 (294)
Q Consensus       226 ~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~  286 (294)
                      ...+..|.||||+|+..|+.+++++|...+++.        ...+..|.||||+|+.+|+.
T Consensus       215 N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI--------N~~d~~G~TpLh~Aa~~g~~  267 (437)
T PHA02795        215 NQLDAGGRTLLYRAIYAGYIDLVSWLLENGANV--------NAVMSNGYTCLDVAVDRGSV  267 (437)
T ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--------CCcCCCCCCHHHHHHHcCCc
Confidence            888889999999999999999999999999874        45677899999999999864

>PHA02792 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.4e-25  Score=205.78  Aligned_cols=225  Identities=11%  Similarity=-0.028  Sum_probs=156.1

Q ss_pred             CCCCccccCCCCCCCCCCCCCCCchhHHHHHHH-cCCHHHHHHHHhcCCCCC----------------------------
Q 022605           49 QSSLDPIRRSPVQDELTVPENLDSTMQLLFMAC-RGDVKGVEDLLNEGSDVN----------------------------   99 (294)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~-~g~~~~v~~Ll~~g~~~~----------------------------   99 (294)
                      .++.+.++.++..+...+..+.++.||||+|+. .++.|+|++||++|+|++                            
T Consensus        82 n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  161 (631)
T PHA02792         82 NIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDD  161 (631)
T ss_pred             cccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccc
Confidence            456677777777777777777777888888865 578888888888887632                            


Q ss_pred             --------CCCCCCCcHHHHHHHcC-------cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHCCC
Q 022605          100 --------SIDLDGRTALHIAACEG-------HVEVVKLLLSKKANIDARDRWGSTAAADAKYYG--NVEVYNILKARGA  162 (294)
Q Consensus       100 --------~~~~~g~TpLh~A~~~g-------~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ga  162 (294)
                              ..|..|.||||+|+..+       +.|++++|+++|++++..|..|.||||+|+...  ..+++++|++..-
T Consensus       162 ~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~  241 (631)
T PHA02792        162 YDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNY  241 (631)
T ss_pred             cccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccc
Confidence                    23345778888888877       788888888888888888888888888888776  5566666654211


Q ss_pred             C----------------------CCCC-------CCCC------------------------------------------
Q 022605          163 K----------------------VPKT-------KRTP------------------------------------------  171 (294)
Q Consensus       163 ~----------------------~~~~-------~~t~------------------------------------------  171 (294)
                      +                      +|..       |.+|                                          
T Consensus       242 ~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~i  321 (631)
T PHA02792        242 SGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYI  321 (631)
T ss_pred             cccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccH
Confidence            0                      0000       2221                                          


Q ss_pred             ---------------------ccccCC---CCCcccccCcchhhhhcccCC--CCCceeeeeecCch---hhhHhhhccC
Q 022605          172 ---------------------MTVANP---REVPEYELNPLELQVRKADGI--TKGSYQVAKWNGTK---VWVKILDKES  222 (294)
Q Consensus       172 ---------------------l~~a~~---~~~~~~l~~~~~~~~~~~~~~--~~t~l~~A~~~g~~---~~v~~Ll~~~  222 (294)
                                           ++.|+.   .+++++|+..+ ++++..+..  +.||||.|+.....   +++++|++.|
T Consensus       322 eiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~G-ADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G  400 (631)
T PHA02792        322 NVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNG-NVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYI  400 (631)
T ss_pred             HHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcC-CchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcC
Confidence                                 111111   12334455443 344444444  46888887766554   3578888888


Q ss_pred             CCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccc
Q 022605          223 HKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSF  282 (294)
Q Consensus       223 ~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~  282 (294)
                      ++....+..|.||||+|+..++.+++++|...+++        ....+..|.|||++|+.
T Consensus       401 ADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD--------IN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        401 DDINKIDKHGRSILYYCIESHSVSLVEWLIDNGAD--------INITTKYGSTCIGICVI  452 (631)
T ss_pred             CccccccccCcchHHHHHHcCCHHHHHHHHHCCCC--------CCCcCCCCCCHHHHHHH
Confidence            88878888899999999999999999999998876        45578889999999975

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1e-24  Score=212.57  Aligned_cols=169  Identities=16%  Similarity=0.115  Sum_probs=146.2

Q ss_pred             CCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 022605           37 PRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEG  116 (294)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g  116 (294)
                      +.....++.++..++.+.++.++..+...+..|..|.||||+||..|+.++|++|+++|+++|.+|.+|.||||+|+..|
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAK  602 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhC
Confidence            34456778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchh
Q 022605          117 HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLEL  190 (294)
Q Consensus       117 ~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~  190 (294)
                      +.+++++|++.++..+.  ..+.++||.|+..|+.+++++|+++|+++|..   |+||||+|+..   +++++|+..+ .
T Consensus       603 ~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G-A  679 (823)
T PLN03192        603 HHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNG-A  679 (823)
T ss_pred             CHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcC-C
Confidence            99999999998876553  45779999999999999999999999998654   99999999765   5677888765 5


Q ss_pred             hhhcccCCC-CCceeeeee
Q 022605          191 QVRKADGIT-KGSYQVAKW  208 (294)
Q Consensus       191 ~~~~~~~~~-~t~l~~A~~  208 (294)
                      +++..+..+ .+|+..+..
T Consensus       680 dv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        680 DVDKANTDDDFSPTELREL  698 (823)
T ss_pred             CCCCCCCCCCCCHHHHHHH
Confidence            666666666 677655533

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=1e-24  Score=182.81  Aligned_cols=162  Identities=24%  Similarity=0.222  Sum_probs=144.2

Q ss_pred             CCCCCCCchhHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHc-----CcHHHHHHHHhCCCCCCCCC-CC
Q 022605           65 TVPENLDSTMQLLFMACRGDVKGVEDLLNEG-SDVNSIDLDGRTALHIAACE-----GHVEVVKLLLSKKANIDARD-RW  137 (294)
Q Consensus        65 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~~~~~~~~~g~TpLh~A~~~-----g~~~~v~~Ll~~gad~~~~~-~~  137 (294)
                      .+..|.+|+|+||||+..+++++|+.||+.| +++|..+.-|+||+++|+..     .+.++|..|.+.| |||++- ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            4557889999999999999999999999999 79999999999999999864     5778999999987 888875 57


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHh
Q 022605          138 GSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKI  217 (294)
Q Consensus       138 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~  217 (294)
                      |+|+|++|+.+|+.++|+.||..|+|+|.+                            |..|.|+|++|+.+|+.|+|++
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQ----------------------------DdDGSTALMCA~EHGhkEivkl  391 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQ----------------------------DDDGSTALMCAAEHGHKEIVKL  391 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccc----------------------------cCCccHHHhhhhhhChHHHHHH
Confidence            999999999999999999999999998665                            7789999999999999999999


Q ss_pred             hhccCCCCh-HhhhhhhhHHHHHHHcCCCchhhhhhhhc
Q 022605          218 LDKESHKDP-ERINAFTHELTIVEKARHPNVVQFVGAVT  255 (294)
Q Consensus       218 Ll~~~~~~~-~~~~~~~t~l~~a~~~~~~~iv~~L~~~~  255 (294)
                      |+....++. -.+.+|.|+|.+|...||.+|.-+|.+..
T Consensus       392 LLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  392 LLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             HhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence            996655554 45568999999999999999999996653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=8e-25  Score=191.93  Aligned_cols=228  Identities=18%  Similarity=0.152  Sum_probs=128.2

Q ss_pred             ccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 022605           44 FSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKL  123 (294)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~  123 (294)
                      ..++.++..+.+..++..+...+..+.+|.|+||.+|...+.+||++|+++|++||..|..||||||.|+..||+.++++
T Consensus        45 l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~  124 (527)
T KOG0505|consen   45 LEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEY  124 (527)
T ss_pred             HhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHH
Confidence            34444444455544444444444445555555555555555555555555555555555555555555555555555555


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCc
Q 022605          124 LLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKA-RGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGS  202 (294)
Q Consensus       124 Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~  202 (294)
                      |+++||++-..+..|..|+.+|...-..+++..-.. .|++++....-+... -..++..++ ..+ ...+.....|.|.
T Consensus       125 li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~-ml~D~~q~l-~~G-~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  125 LIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQT-MLDDARQWL-NAG-AELDARHARGATA  201 (527)
T ss_pred             HHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHH-HHHHHHHHH-hcc-ccccccccccchH
Confidence            555555555555555555444443333333222221 122211100000000 000011111 112 2223333448899


Q ss_pred             eeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccc
Q 022605          203 YQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSF  282 (294)
Q Consensus       203 l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~  282 (294)
                      ||+|+.+|..++.++|++.+......+.+|+||+|.|+..|+.++.++|...+.+        .......|.|||-.|..
T Consensus       202 lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~--------~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  202 LHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD--------MDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcc--------cchhhhcCCCCccchhh
Confidence            9999999999999999999999999999999999999999999999999888876        33455666777776643

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=1.2e-23  Score=167.53  Aligned_cols=129  Identities=20%  Similarity=0.199  Sum_probs=113.5

Q ss_pred             CCCCCCchhHHHHHHHcCCHHHHHHHHh------cCCCCCCCCCCCCcHHHHHHHcCc----HHHHHHHHhCCCCCCCCC
Q 022605           66 VPENLDSTMQLLFMACRGDVKGVEDLLN------EGSDVNSIDLDGRTALHIAACEGH----VEVVKLLLSKKANIDARD  135 (294)
Q Consensus        66 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~------~g~~~~~~~~~g~TpLh~A~~~g~----~~~v~~Ll~~gad~~~~~  135 (294)
                      ...+..|.||||+||..|+.++|++|+.      .|++++.+|..|+||||+|+..|+    .+++++|+++|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            3457789999999999999999999854      368899999999999999999999    589999999999999998


Q ss_pred             C-CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchh
Q 022605          136 R-WGSTAAADAKYYGNVEVYNILKA-RGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKV  213 (294)
Q Consensus       136 ~-~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~  213 (294)
                      . .|+||||+|+..++.+++++|++ .|++++.                            .+..|.||||.|+..|+.+
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~----------------------------~n~~g~tpL~~A~~~~~~~  146 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHF----------------------------CNADNKSPFELAIDNEDVA  146 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc----------------------------CCCCCCCHHHHHHHCCCHH
Confidence            5 89999999999999999999997 4777643                            2456788999999999999


Q ss_pred             hhHhhhccC
Q 022605          214 WVKILDKES  222 (294)
Q Consensus       214 ~v~~Ll~~~  222 (294)
                      ++++|++.+
T Consensus       147 iv~~L~~~~  155 (169)
T PHA02741        147 MMQILREIV  155 (169)
T ss_pred             HHHHHHHHH
Confidence            999998654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.90  E-value=6.3e-24  Score=194.95  Aligned_cols=218  Identities=14%  Similarity=0.077  Sum_probs=165.3

Q ss_pred             CCCCCCCCCchhHHHHHHH-cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH-cCcHHHHHHHHhCCCCCC--------
Q 022605           63 ELTVPENLDSTMQLLFMAC-RGDVKGVEDLLNEGSDVNSIDLDGRTALHIAAC-EGHVEVVKLLLSKKANID--------  132 (294)
Q Consensus        63 ~~~~~~~~~g~t~L~~Aa~-~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~-~g~~~~v~~Ll~~gad~~--------  132 (294)
                      ......+.+|.+++|+-|. +|++|+|++|+++|+|+|.++..|.||+|+|+. .++.|++++|+++|||++        
T Consensus        62 ~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~  141 (631)
T PHA02792         62 SSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYK  141 (631)
T ss_pred             hCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcc
Confidence            3445677788889977666 789999999999999999999999999999965 799999999999999842        


Q ss_pred             ----------------------------CCCCCCCCHHHHHHHcC-------CHHHHHHHHHCCCCC---CCCCCCCccc
Q 022605          133 ----------------------------ARDRWGSTAAADAKYYG-------NVEVYNILKARGAKV---PKTKRTPMTV  174 (294)
Q Consensus       133 ----------------------------~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~ga~~---~~~~~t~l~~  174 (294)
                                                  ..|..|.||||+|+..+       +.+++++|+++|+++   +..|.||||+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~  221 (631)
T PHA02792        142 IIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYY  221 (631)
T ss_pred             hhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHH
Confidence                                        23557999999999999       899999999999998   4459999999


Q ss_pred             cCCC-----CCcccccCc-------------------------------------c------------------------
Q 022605          175 ANPR-----EVPEYELNP-------------------------------------L------------------------  188 (294)
Q Consensus       175 a~~~-----~~~~~l~~~-------------------------------------~------------------------  188 (294)
                      |...     +++++|+..                                     .                        
T Consensus       222 ~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~  301 (631)
T PHA02792        222 YVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKR  301 (631)
T ss_pred             HHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHH
Confidence            8332     222111100                                     0                        


Q ss_pred             -----------------------hhhhhcccC----CCCCceeeeeecCchhhhHhhhccCCCChHhhhhh--hhHHHHH
Q 022605          189 -----------------------ELQVRKADG----ITKGSYQVAKWNGTKVWVKILDKESHKDPERINAF--THELTIV  239 (294)
Q Consensus       189 -----------------------~~~~~~~~~----~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~--~t~l~~a  239 (294)
                                             ++.++.+..    ....+++.|+..|+.++|++|++.|+.....++.|  .||+|+|
T Consensus       302 ~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A  381 (631)
T PHA02792        302 YTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPT  381 (631)
T ss_pred             HhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHH
Confidence                                   000111110    12234677888999999999999988776666554  5999987


Q ss_pred             HHcCCCc---hhhhhhhhcCCCCeEEEEecCCCCCCCccccccccccccccc
Q 022605          240 EKARHPN---VVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHT  288 (294)
Q Consensus       240 ~~~~~~~---iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~  288 (294)
                      ......+   ++++|...+++        ...++..|.||||.|+.+++..+
T Consensus       382 ~~n~~~~v~~IlklLIs~GAD--------IN~kD~~G~TPLh~Aa~~~n~ei  425 (631)
T PHA02792        382 LSIHESDVLSILKLCKPYIDD--------INKIDKHGRSILYYCIESHSVSL  425 (631)
T ss_pred             HHhccHhHHHHHHHHHhcCCc--------cccccccCcchHHHHHHcCCHHH
Confidence            7766554   57777777875        45578889999999999887654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=2.3e-23  Score=165.24  Aligned_cols=134  Identities=19%  Similarity=0.225  Sum_probs=95.0

Q ss_pred             CCCCchhHHHHHHHcCCH----HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHH---HHHHHhCCCCCCCCC-CCCC
Q 022605           68 ENLDSTMQLLFMACRGDV----KGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEV---VKLLLSKKANIDARD-RWGS  139 (294)
Q Consensus        68 ~~~~g~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~---v~~Ll~~gad~~~~~-~~g~  139 (294)
                      .+.++.++||.||..|+.    +++++|++.|++++.+|..|+||||+|+..|+.++   +++|+++|++++.++ ..|.
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~   95 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGN   95 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            344566778888888777    55556677777777777778888888887776543   677888888888777 4788


Q ss_pred             CHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhh
Q 022605          140 TAAADAKYYGNVEVYNILKA-RGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKIL  218 (294)
Q Consensus       140 t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~L  218 (294)
                      ||||+|+..++.+++++|++ .|++++.                            .+..|.||||+|+..|+.+++++|
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad~~~----------------------------~d~~g~tpL~~A~~~~~~~iv~~L  147 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVNLGA----------------------------INYQHETAYHIAYKMRDRRMMEIL  147 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCCccC----------------------------cCCCCCCHHHHHHHcCCHHHHHHH
Confidence            88888888888888888874 5666532                            245667777777777777777777


Q ss_pred             hccCCCChHhh
Q 022605          219 DKESHKDPERI  229 (294)
Q Consensus       219 l~~~~~~~~~~  229 (294)
                      ++.+++.....
T Consensus       148 l~~ga~~~~~~  158 (166)
T PHA02743        148 RANGAVCDDPL  158 (166)
T ss_pred             HHcCCCCCCcc
Confidence            77666554433

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=5.3e-23  Score=175.73  Aligned_cols=148  Identities=16%  Similarity=0.038  Sum_probs=115.9

Q ss_pred             CCCCCch-hHHHHHHHcCCHHHHHHHHhcCCCCCCCC----CCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCC-CCCCCC
Q 022605           67 PENLDST-MQLLFMACRGDVKGVEDLLNEGSDVNSID----LDGRTALHIAACEGHVEVVKLLLSKKANIDAR-DRWGST  140 (294)
Q Consensus        67 ~~~~~g~-t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~----~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-~~~g~t  140 (294)
                      ..|..+. ++||.|+..|+.+++++|+++|+++|.++    ..|.||||+|+..++.+++++|+++|||+|.. +..|.|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            3445555 46677777899999999999999999874    58999999999999999999999999999986 468999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhh
Q 022605          141 AAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVW  214 (294)
Q Consensus       141 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~  214 (294)
                      |||+|+..++.+++++|++.|++++..   |.||||+|+..   .....+..      ...+..+.+|.+.+   ++.++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~n~ei  177 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD------NEISNFYKHPKKIL---INFDI  177 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC------CcccccccChhhhh---ccHHH
Confidence            999999999999999999999998654   88888888543   22222211      11344455666654   46788


Q ss_pred             hHhhhccCC
Q 022605          215 VKILDKESH  223 (294)
Q Consensus       215 v~~Ll~~~~  223 (294)
                      +++|++.+.
T Consensus       178 ~~~Lish~v  186 (300)
T PHA02884        178 LKILVSHFI  186 (300)
T ss_pred             HHHHHHHHH
Confidence            888886653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.89  E-value=1.7e-23  Score=202.76  Aligned_cols=231  Identities=16%  Similarity=0.055  Sum_probs=166.2

Q ss_pred             CCccccccCCCCCccccCCCCC--CCCCCCCCCCchhHHH-HHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc-
Q 022605           40 NNMRFSFGRQSSLDPIRRSPVQ--DELTVPENLDSTMQLL-FMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACE-  115 (294)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~t~L~-~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~-  115 (294)
                      ...++.++..|+.+.++.++..  +...+..|..|.|||| .|+.+++.+++++|+++|+    .+..|.||||.|+.. 
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~   93 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEY   93 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhcc
Confidence            3455678888999999888877  5566677889999999 8888889999999999987    577899999999872 


Q ss_pred             --CcHHHHHHHHhCCCC------CC----CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCccc
Q 022605          116 --GHVEVVKLLLSKKAN------ID----ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEY  183 (294)
Q Consensus       116 --g~~~~v~~Ll~~gad------~~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~  183 (294)
                        +...++.++.+.+.+      ++    ..+..|.||||+|+..|+.++|++|+++|++++.......          +
T Consensus        94 ~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~----------~  163 (743)
T TIGR00870        94 VDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDF----------F  163 (743)
T ss_pred             HHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCch----------h
Confidence              222344444444422      11    1235699999999999999999999999999985411110          0


Q ss_pred             ccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcC---------CCchhhhhhhh
Q 022605          184 ELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKAR---------HPNVVQFVGAV  254 (294)
Q Consensus       184 l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~---------~~~iv~~L~~~  254 (294)
                      ..    .........|.||||.|+..|+.+++++|++.+++....+..|+||+|+|+..+         ...+.+++...
T Consensus       164 ~~----~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~l  239 (743)
T TIGR00870       164 VK----SQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSL  239 (743)
T ss_pred             hc----CCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            00    000122345789999999999999999999999888888889999999999986         23355555544


Q ss_pred             cCCCCeEEEEecCCCCCCCcccccccccccccccC
Q 022605          255 TQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       255 ~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~~  289 (294)
                      .+...-..-.+ ...+..|.||||+|+.+++..++
T Consensus       240 l~~~~~~~el~-~i~N~~g~TPL~~A~~~g~~~l~  273 (743)
T TIGR00870       240 LDKLRDSKELE-VILNHQGLTPLKLAAKEGRIVLF  273 (743)
T ss_pred             HhccCChHhhh-hhcCCCCCCchhhhhhcCCccHH
Confidence            43321100000 22456788999999999987654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=1.5e-23  Score=190.09  Aligned_cols=191  Identities=21%  Similarity=0.154  Sum_probs=161.7

Q ss_pred             CCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 022605           65 TVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD  144 (294)
Q Consensus        65 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~  144 (294)
                      .+..|.+|.|+||.|+.+|+.+++++|+++.+-++..|..|.+|||+|++.|+.++|++|+.++..+|..+..|.||||.
T Consensus        42 ~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhl  121 (854)
T KOG0507|consen   42 HNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHL  121 (854)
T ss_pred             ccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccch
Confidence            34567799999999999999999999999999888889999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCC---CCCCCCCccccCCC---CCcccccCcchhh--------hhcccCCCCCceeeeeecC
Q 022605          145 AKYYGNVEVYNILKARGAKV---PKTKRTPMTVANPR---EVPEYELNPLELQ--------VRKADGITKGSYQVAKWNG  210 (294)
Q Consensus       145 A~~~g~~~~v~~Ll~~ga~~---~~~~~t~l~~a~~~---~~~~~l~~~~~~~--------~~~~~~~~~t~l~~A~~~g  210 (294)
                      |++.||.+++.+|+++|+++   |..+.|++.+|++.   ++++.|+.. ++.        -....-.+.+|||.|+++|
T Consensus       122 aaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaakng  200 (854)
T KOG0507|consen  122 AAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNG  200 (854)
T ss_pred             hhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhhcc
Confidence            99999999999999999986   55699999999764   445554433 111        1122233468999999999


Q ss_pred             chhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCC
Q 022605          211 TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       211 ~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~  257 (294)
                      +.++++.|+..|-+.+ ...+..|++|.|+-.|..++|.+|+..+-+
T Consensus       201 h~~~~~~ll~ag~din-~~t~~gtalheaalcgk~evvr~ll~~gin  246 (854)
T KOG0507|consen  201 HVECMQALLEAGFDIN-YTTEDGTALHEAALCGKAEVVRFLLEIGIN  246 (854)
T ss_pred             hHHHHHHHHhcCCCcc-cccccchhhhhHhhcCcchhhhHHHhhccc
Confidence            9999999997775544 444556999999999999999999887765

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.89  E-value=2.1e-23  Score=158.13  Aligned_cols=104  Identities=36%  Similarity=0.418  Sum_probs=94.3

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 022605           72 STMQLLFMACRGDVKGVEDLLNEGSD-VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  150 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  150 (294)
                      ..-.+.+|+..+.+..|+.||+..++ +|.+|.+|+||||-|+++||++||+.|+..||+++++...||||||-||..++
T Consensus        63 p~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   63 PIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc
Confidence            34568999999999999999998876 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCC---CCCCcccc
Q 022605          151 VEVYNILKARGAKVPKT---KRTPMTVA  175 (294)
Q Consensus       151 ~~~v~~Ll~~ga~~~~~---~~t~l~~a  175 (294)
                      .+++.+||++|+|+|..   .+||||+|
T Consensus       143 ~~va~~LLqhgaDVnA~t~g~ltpLhla  170 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQTKGLLTPLHLA  170 (228)
T ss_pred             hhHHHHHHhccCcccccccccchhhHHh
Confidence            99999999999999765   34444444

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=6.5e-23  Score=162.60  Aligned_cols=132  Identities=23%  Similarity=0.206  Sum_probs=114.5

Q ss_pred             CCCCCCccccccCCCCCcccc----CCCCCCCCCCCCCCCchhHHHHHHHcCCHHH---HHHHHhcCCCCCCCC-CCCCc
Q 022605           36 DPRRNNMRFSFGRQSSLDPIR----RSPVQDELTVPENLDSTMQLLFMACRGDVKG---VEDLLNEGSDVNSID-LDGRT  107 (294)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~---v~~Ll~~g~~~~~~~-~~g~T  107 (294)
                      +.+....++.+++.++...+.    .+...+......+..|+||||+|+..|+.+.   +++|+++|+++|.++ ..|.|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~T   96 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNT   96 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCc
Confidence            345566778888888874433    4455566667778899999999999988654   899999999999998 58999


Q ss_pred             HHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 022605          108 ALHIAACEGHVEVVKLLLS-KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT  167 (294)
Q Consensus       108 pLh~A~~~g~~~~v~~Ll~-~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  167 (294)
                      |||+|+..|+.+++++|++ .|++++.++..|+||||+|+..++.+++++|+++|++++..
T Consensus        97 pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~  157 (166)
T PHA02743         97 LLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDP  157 (166)
T ss_pred             HHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            9999999999999999995 79999999999999999999999999999999999998655

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=7.8e-23  Score=160.40  Aligned_cols=136  Identities=22%  Similarity=0.285  Sum_probs=106.5

Q ss_pred             CCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCC--C-----CCCCCCCCCcHHHHHHHcCcH---HHHHHHHhCC
Q 022605           59 PVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGS--D-----VNSIDLDGRTALHIAACEGHV---EVVKLLLSKK  128 (294)
Q Consensus        59 ~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~--~-----~~~~~~~g~TpLh~A~~~g~~---~~v~~Ll~~g  128 (294)
                      ++........|..|.||||+||..|+.  +.+++..+.  +     ++.+|..|.||||+|+..|+.   +++++|+++|
T Consensus         4 ~~~~~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g   81 (154)
T PHA02736          4 PEEIIFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG   81 (154)
T ss_pred             cchhhHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcC
Confidence            344445566778899999999999984  333333222  2     335688899999999999887   4688999999


Q ss_pred             CCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeee
Q 022605          129 ANIDARD-RWGSTAAADAKYYGNVEVYNILKAR-GAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVA  206 (294)
Q Consensus       129 ad~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A  206 (294)
                      ++++.++ ..|+||||+|+..++.+++++|++. |++++.                            .+..|.||||+|
T Consensus        82 adin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~----------------------------~~~~g~tpL~~A  133 (154)
T PHA02736         82 ADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEI----------------------------LNYAFKTPYYVA  133 (154)
T ss_pred             CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcc----------------------------ccCCCCCHHHHH
Confidence            9999998 4899999999999999999999974 776533                            356788899999


Q ss_pred             eecCchhhhHhhhccCCC
Q 022605          207 KWNGTKVWVKILDKESHK  224 (294)
Q Consensus       207 ~~~g~~~~v~~Ll~~~~~  224 (294)
                      +..|+.+++++|+..++.
T Consensus       134 ~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        134 CERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             HHcCCHHHHHHHHHcCCC
Confidence            999999999999877754

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.86  E-value=8e-23  Score=160.63  Aligned_cols=203  Identities=17%  Similarity=0.122  Sum_probs=172.6

Q ss_pred             ccCCCCCccccC-CCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 022605           46 FGRQSSLDPIRR-SPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLL  124 (294)
Q Consensus        46 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~L  124 (294)
                      ..++++.+..+. .......+...+.+|+.+++.|+-.|+...+..+|.+|+..|..+-.+++|+.+++...+++++..+
T Consensus        69 ~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~  148 (296)
T KOG0502|consen   69 AVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLL  148 (296)
T ss_pred             hhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHH
Confidence            344555544333 3334455667778899999999999999999999999999999999999999999999999999888


Q ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCcee
Q 022605          125 LSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQ  204 (294)
Q Consensus       125 l~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~  204 (294)
                      .++  .+|..|..|.|||.||+..|+..+|++|++.|++++.-                            .....++|.
T Consensus       149 ~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~l----------------------------gk~resALs  198 (296)
T KOG0502|consen  149 VNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDAL----------------------------GKYRESALS  198 (296)
T ss_pred             hhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhh----------------------------hhhhhhhHh
Confidence            876  57899999999999999999999999999999998553                            223457899


Q ss_pred             eeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccccc
Q 022605          205 VAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHK  284 (294)
Q Consensus       205 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~  284 (294)
                      +|+..|..++|++|+.++.+.+..+.+|.|||-+|++.+|..+++.|+..+++.        .-..+.|.+++.+|...|
T Consensus       199 LAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~--------t~e~dsGy~~mdlAValG  270 (296)
T KOG0502|consen  199 LATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADV--------TQEDDSGYWIMDLAVALG  270 (296)
T ss_pred             HHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCc--------ccccccCCcHHHHHHHhh
Confidence            999999999999999998888888889999999999999999999999999874        334677788888887766


Q ss_pred             cc
Q 022605          285 QT  286 (294)
Q Consensus       285 ~~  286 (294)
                      .-
T Consensus       271 yr  272 (296)
T KOG0502|consen  271 YR  272 (296)
T ss_pred             hH
Confidence            54

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.86  E-value=4.6e-21  Score=136.08  Aligned_cols=88  Identities=41%  Similarity=0.571  Sum_probs=82.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 022605           76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYN  155 (294)
Q Consensus        76 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~  155 (294)
                      ||+||..|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999988876    889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCCCC
Q 022605          156 ILKARGAKVPKT  167 (294)
Q Consensus       156 ~Ll~~ga~~~~~  167 (294)
                      +|+++|++++.+
T Consensus        77 ~Ll~~g~~~~~~   88 (89)
T PF12796_consen   77 LLLEHGADVNIR   88 (89)
T ss_dssp             HHHHTTT-TTSS
T ss_pred             HHHHcCCCCCCc
Confidence            999999998764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=6.5e-22  Score=150.04  Aligned_cols=142  Identities=20%  Similarity=0.191  Sum_probs=116.8

Q ss_pred             ccccCCCCCccccCCCCCCCCC-CCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHH
Q 022605           44 FSFGRQSSLDPIRRSPVQDELT-VPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVK  122 (294)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~  122 (294)
                      .-++..+.+..|++++...... +.+|.+|.||||.|+.+|++++|+.|+..|++++++...||||||-||.-++.+|+.
T Consensus        68 lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~  147 (228)
T KOG0512|consen   68 LWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAG  147 (228)
T ss_pred             HHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHH
Confidence            3345567778888887776554 678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHH-CCCCC---CCCCCCCccccCCCCCccccc
Q 022605          123 LLLSKKANIDARDRWGSTAAADAKYYGN-VEVYNILKA-RGAKV---PKTKRTPMTVANPREVPEYEL  185 (294)
Q Consensus       123 ~Ll~~gad~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~-~ga~~---~~~~~t~l~~a~~~~~~~~l~  185 (294)
                      .|+++|+|||+.....+||||+|+...+ ...+.+|+. .++.+   +..+.||+.+|-+..+..+++
T Consensus       148 ~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lf  215 (228)
T KOG0512|consen  148 RLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLF  215 (228)
T ss_pred             HHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHHH
Confidence            9999999999999999999999998765 456677764 34444   333667777776655555444

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.84  E-value=1.6e-21  Score=182.51  Aligned_cols=227  Identities=19%  Similarity=0.176  Sum_probs=193.9

Q ss_pred             cCCCCCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCcHH
Q 022605           31 RQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSI-DLDGRTAL  109 (294)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-~~~g~TpL  109 (294)
                      ......++....+-.+++.+.-+.+..++..+......|..|.+||.+|+-.||..+|+.|+.+-+++++. |..+.|+|
T Consensus       749 id~~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~l  828 (2131)
T KOG4369|consen  749 IDPLTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTML  828 (2131)
T ss_pred             eccccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceE
Confidence            33455666777777777778878888888888999999999999999999999999999999999999864 57899999


Q ss_pred             HHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CCCCccccCCC---CCc
Q 022605          110 HIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT-----KRTPMTVANPR---EVP  181 (294)
Q Consensus       110 h~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-----~~t~l~~a~~~---~~~  181 (294)
                      -+||..|..++|++||.+|++-..++-..+|||.+|...|+.++|+.|+..|+.+|.+     |..||.+|...   ...
T Consensus       829 Slacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at  908 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAAT  908 (2131)
T ss_pred             EEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHH
Confidence            9999999999999999999999999999999999999999999999999999999766     88999999765   345


Q ss_pred             ccccCcchhhhhcc-cCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCC
Q 022605          182 EYELNPLELQVRKA-DGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI  258 (294)
Q Consensus       182 ~~l~~~~~~~~~~~-~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~  258 (294)
                      ..++..+ .+++.. .....|+|-+|+..|+.++|.+||...+....+-+.|.|||+.++..|+.++-.+|+..+++.
T Consensus       909 ~~ll~~g-sdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~  985 (2131)
T KOG4369|consen  909 LSLLQPG-SDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADT  985 (2131)
T ss_pred             HHHhccc-chhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccccc
Confidence            5666655 233332 233468999999999999999999887777777788999999999999999999999988874

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.84  E-value=4.3e-21  Score=186.03  Aligned_cols=188  Identities=20%  Similarity=0.138  Sum_probs=146.1

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCcHHH-HHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 022605           70 LDSTMQLLFMACRGDVKGVEDLLNE--GSDVNSIDLDGRTALH-IAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  146 (294)
Q Consensus        70 ~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~g~TpLh-~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~  146 (294)
                      .+++.+|+.||..|+.+.|+.+++.  +.++|..|..|+|||| .|+.+++.+++++|+++|+    .+..|.||||.|+
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS   90 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH
Confidence            3578999999999999999999998  8999999999999999 8999999999999999987    6778999999998


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCCh
Q 022605          147 YYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDP  226 (294)
Q Consensus       147 ~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~  226 (294)
                      . +..+.++.++....+....+..+ .          +..   .........|.||||+|+.+|+.++|++|++.|++.+
T Consensus        91 ~-~~~~~v~~ll~~l~~~~~~~~~~-~----------~~~---~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~  155 (743)
T TIGR00870        91 L-EYVDAVEAILLHLLAAFRKSGPL-E----------LAN---DQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP  155 (743)
T ss_pred             h-ccHHHHHHHHHHHhhcccccCch-h----------hhc---cccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence            7 33444444444332221111111 0          000   0011223468899999999999999999999887665


Q ss_pred             Hhh--------------hhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccccc
Q 022605          227 ERI--------------NAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHK  284 (294)
Q Consensus       227 ~~~--------------~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~  284 (294)
                      ...              ..|.+|++.|+..++++++++|...+++        ....++.|.||||+|+.++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad--------in~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       156 ARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD--------ILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             cCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc--------hhhHhhhhhHHHHHHHhhh
Confidence            321              3478999999999999999999888875        4556788999999999986

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=4.9e-21  Score=163.68  Aligned_cols=149  Identities=15%  Similarity=0.064  Sum_probs=126.2

Q ss_pred             CCCCc-cccccCCCCCccccCCCCCCCCCCCC----CCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHH
Q 022605           38 RRNNM-RFSFGRQSSLDPIRRSPVQDELTVPE----NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSID-LDGRTALHI  111 (294)
Q Consensus        38 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~g~TpLh~  111 (294)
                      ...+. ++.++..+..+.++.++..+......    +..|.||||+|+..|+.+++++|+++|+|+|.++ ..|.||||+
T Consensus        31 ~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~  110 (300)
T PHA02884         31 ICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYI  110 (300)
T ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHH
Confidence            33444 44555557788889999888877665    4589999999999999999999999999999864 679999999


Q ss_pred             HHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcc
Q 022605          112 AACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPL  188 (294)
Q Consensus       112 A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~  188 (294)
                      |+..|+.+++++|+++|++++..|..|.||||+|+..++.+++..+.  |...+..+.+|.+++...+++++|+...
T Consensus       111 Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~n~ei~~~Lish~  185 (300)
T PHA02884        111 SVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNEISNFYKHPKKILINFDILKILVSHF  185 (300)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCcccccccChhhhhccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999876654  5556677889998877677778777665

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=1.5e-21  Score=163.86  Aligned_cols=154  Identities=22%  Similarity=0.178  Sum_probs=130.9

Q ss_pred             CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcC-----CHHHHHHHHHCCCCCCCCCCCC
Q 022605           98 VNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKYYG-----NVEVYNILKARGAKVPKTKRTP  171 (294)
Q Consensus        98 ~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~~~~g~t~L~~A~~~g-----~~~~v~~Ll~~ga~~~~~~~t~  171 (294)
                      ||..|.+|.|+||||+..+++++|+.||+.| +|++..++-|+||+++++...     +.++|.-|++.| ++       
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nV-------  332 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DV-------  332 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Cc-------
Confidence            6888999999999999999999999999986 799999999999999988653     466777777654 22       


Q ss_pred             ccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhh
Q 022605          172 MTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFV  251 (294)
Q Consensus       172 l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L  251 (294)
                                         +.. ....|+|+|++|+.+|+.++|+.|+..+++.+..+++|.|+|+.|++.||.||+++|
T Consensus       333 -------------------NaK-AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklL  392 (452)
T KOG0514|consen  333 -------------------NAK-ASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLL  392 (452)
T ss_pred             -------------------chh-hhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHH
Confidence                               221 134688999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeEEEEecCCCCCCCccccccccccccc
Q 022605          252 GAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQT  286 (294)
Q Consensus       252 ~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~  286 (294)
                      ++...-       +.--.+..|-|+|.+|-.+||-
T Consensus       393 LA~p~c-------d~sLtD~DgSTAl~IAleagh~  420 (452)
T KOG0514|consen  393 LAVPSC-------DISLTDVDGSTALSIALEAGHR  420 (452)
T ss_pred             hccCcc-------cceeecCCCchhhhhHHhcCch
Confidence            887653       3444567788999999998874

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=1.2e-20  Score=150.15  Aligned_cols=129  Identities=19%  Similarity=0.216  Sum_probs=112.6

Q ss_pred             CCCCCCccccccCCCCCccccCCCC------CCCCCCCCCCCchhHHHHHHHcCC----HHHHHHHHhcCCCCCCCCC-C
Q 022605           36 DPRRNNMRFSFGRQSSLDPIRRSPV------QDELTVPENLDSTMQLLFMACRGD----VKGVEDLLNEGSDVNSIDL-D  104 (294)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~t~L~~Aa~~g~----~~~v~~Ll~~g~~~~~~~~-~  104 (294)
                      +..+.+.++.+++.++.+.++.++.      .+......|..|.||||+|+..|+    .+++++|+++|+++|.++. .
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~   97 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLE   97 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCC
Confidence            3456778888888898887776532      234456778899999999999999    5899999999999999985 8


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Q 022605          105 GRTALHIAACEGHVEVVKLLLS-KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV  164 (294)
Q Consensus       105 g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  164 (294)
                      |+||||+|+..++.+++++|++ .|++++..|..|+||||+|+..++.+++++|++.++..
T Consensus        98 g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         98 GDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999998 59999999999999999999999999999999987653

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.82  E-value=5.8e-21  Score=173.49  Aligned_cols=215  Identities=20%  Similarity=0.154  Sum_probs=178.4

Q ss_pred             CCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 022605           37 PRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEG  116 (294)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g  116 (294)
                      +..-+.+++++-.+....++-+++......-.+..|.+|||+||..|+.++|+.|+.++..+|+.+..|.||||.|++.|
T Consensus        47 ~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhg  126 (854)
T KOG0507|consen   47 YSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHG  126 (854)
T ss_pred             ccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhc
Confidence            35567778888889988888888887777777899999999999999999999999999889999999999999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-----------CCCCCCCccccCCCCCcc---
Q 022605          117 HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV-----------PKTKRTPMTVANPREVPE---  182 (294)
Q Consensus       117 ~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-----------~~~~~t~l~~a~~~~~~~---  182 (294)
                      |.++|.+|+++|+|+-.+|+.+.|+|.+|++.|..++|+.|++...++           +..+-+|||+|+.++.++   
T Consensus       127 h~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~  206 (854)
T KOG0507|consen  127 HLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQ  206 (854)
T ss_pred             chHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHH
Confidence            999999999999999999999999999999999999999999874332           122789999999886554   


Q ss_pred             cccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcC---CCchhhhhhh
Q 022605          183 YELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKAR---HPNVVQFVGA  253 (294)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~---~~~iv~~L~~  253 (294)
                      .|+..+ ++++.... ..|+||.|+..|..++|.+|++.|......+..|.|++++....-   ..+|+-++..
T Consensus       207 ~ll~ag-~din~~t~-~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~  278 (854)
T KOG0507|consen  207 ALLEAG-FDINYTTE-DGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVKN  278 (854)
T ss_pred             HHHhcC-CCcccccc-cchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhhhhhhhc
Confidence            444433 44443333 347999999999999999999998877778888999998876653   3455555433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=4.6e-20  Score=144.67  Aligned_cols=130  Identities=20%  Similarity=0.211  Sum_probs=105.6

Q ss_pred             CCCCCCccccccCCCCCccccCC---CCC--CCCCCCCCCCchhHHHHHHHcCCH---HHHHHHHhcCCCCCCCC-CCCC
Q 022605           36 DPRRNNMRFSFGRQSSLDPIRRS---PVQ--DELTVPENLDSTMQLLFMACRGDV---KGVEDLLNEGSDVNSID-LDGR  106 (294)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~g~t~L~~Aa~~g~~---~~v~~Ll~~g~~~~~~~-~~g~  106 (294)
                      +..+.++++.+++.++...+..+   ...  .......|..|.||||+|+..|+.   +++++|+++|+++|.++ ..|.
T Consensus        14 d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~   93 (154)
T PHA02736         14 DIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGN   93 (154)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCC
Confidence            44566666677777663222111   101  111234578899999999999987   46899999999999998 5899


Q ss_pred             cHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Q 022605          107 TALHIAACEGHVEVVKLLLSK-KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVP  165 (294)
Q Consensus       107 TpLh~A~~~g~~~~v~~Ll~~-gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~  165 (294)
                      ||||+|+..|+.+++++|+++ |++++..|..|+||||+|+..|+.+++++|+++|++++
T Consensus        94 T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         94 TPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999984 99999999999999999999999999999999999875

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.80  E-value=7.9e-21  Score=177.95  Aligned_cols=208  Identities=23%  Similarity=0.277  Sum_probs=176.9

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHH
Q 022605           69 NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA-RDRWGSTAAADAKY  147 (294)
Q Consensus        69 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~~~~g~t~L~~A~~  147 (294)
                      ..+-.|+|-.||..|+-|.|++|+.+|+++..+|..|.+||.+|+..||..+|+.|+++.++++. .|+.+.|+|.+||.
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC
Confidence            34567999999999999999999999999999999999999999999999999999999999986 47889999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCC---CCCCCccccCCC---CCcccccCcc-hhhhhcccCCCCCceeeeeecCchhhhHhhhc
Q 022605          148 YGNVEVYNILKARGAKVPK---TKRTPMTVANPR---EVPEYELNPL-ELQVRKADGITKGSYQVAKWNGTKVWVKILDK  220 (294)
Q Consensus       148 ~g~~~~v~~Ll~~ga~~~~---~~~t~l~~a~~~---~~~~~l~~~~-~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~  220 (294)
                      .|..++|++||..|++-..   .+.|||.+|...   +++..++..+ +++-......|-.||++|..+|+.+.++.|++
T Consensus       834 ggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~  913 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ  913 (2131)
T ss_pred             CCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhc
Confidence            9999999999999998643   489999999664   5666777766 46666777788899999999999999999998


Q ss_pred             cCCCChHhh-hhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccccc
Q 022605          221 ESHKDPERI-NAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHK  284 (294)
Q Consensus       221 ~~~~~~~~~-~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~  284 (294)
                      .+.+.+... -+.+|+|.+|+..|+.|+|.+|+...++.        ..+..-|.|||+-++--|
T Consensus       914 ~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anv--------ehRaktgltplme~AsgG  970 (2131)
T KOG4369|consen  914 PGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANV--------EHRAKTGLTPLMEMASGG  970 (2131)
T ss_pred             ccchhccccccccccceeeccccCcchHHHHHHHHhhhh--------hhhcccCCcccchhhcCC
Confidence            887655433 35679999999999999999999988763        224455666766665444

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.78  E-value=4.5e-20  Score=150.81  Aligned_cols=150  Identities=21%  Similarity=0.166  Sum_probs=122.1

Q ss_pred             HHcCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 022605           80 ACRGDVKGVEDLLN-EGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILK  158 (294)
Q Consensus        80 a~~g~~~~v~~Ll~-~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  158 (294)
                      |+.|+.-.|++.++ ..-|.|.-|..|.+||||||..|+..+|+.|++.|+.+|..+....||||+|+.+||.++|..|+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence            45566555665554 35788888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHH
Q 022605          159 ARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTI  238 (294)
Q Consensus       159 ~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~  238 (294)
                      +..+|+|.                            .+..|.||||+||..|.-.+.+-|+..|+.....++.|.||++.
T Consensus        88 ~~kadvna----------------------------vnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldk  139 (448)
T KOG0195|consen   88 SRKADVNA----------------------------VNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDK  139 (448)
T ss_pred             HHhcccch----------------------------hhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhh
Confidence            98887754                            36678889999999999999999999998888888889999887


Q ss_pred             HHHcCCCchhhhhhhhcCC
Q 022605          239 VEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       239 a~~~~~~~iv~~L~~~~~~  257 (294)
                      |.-.-..-+.+.-...+++
T Consensus       140 akp~l~~~l~e~aek~gq~  158 (448)
T KOG0195|consen  140 AKPMLKNTLLEIAEKHGQS  158 (448)
T ss_pred             hchHHHHHHHHHHHHhCCC
Confidence            6443333333333333444

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.78  E-value=3.3e-18  Score=128.29  Aligned_cols=124  Identities=40%  Similarity=0.526  Sum_probs=108.7

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 022605           68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY  147 (294)
Q Consensus        68 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~  147 (294)
                      .+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||.|+..++.+++++|++.|++++..+..|.||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            35679999999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhh
Q 022605          148 YGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILD  219 (294)
Q Consensus       148 ~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll  219 (294)
                      .++.+++++|++.|.+++.                            .+..+.||++.|...++.+++++|+
T Consensus        83 ~~~~~~~~~L~~~~~~~~~----------------------------~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNA----------------------------RDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcc----------------------------cCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999998754422                            2344557777777777777777764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=3.7e-19  Score=156.58  Aligned_cols=194  Identities=22%  Similarity=0.254  Sum_probs=151.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 022605           75 QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY  154 (294)
Q Consensus        75 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v  154 (294)
                      .+.-|+..|..+-|+.|+..|+++|..+.+|.|+||-+|.-.+.+||++|+++|++||..|..||||||-|+..|+..++
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~  122 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIV  122 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHH
Confidence            47778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCC---CCCCCCCccccCCCCCcccccC---cchhhhhcccCCC-CCceeeeeecCchhhhHhhhccCCCChH
Q 022605          155 NILKARGAKV---PKTKRTPMTVANPREVPEYELN---PLELQVRKADGIT-KGSYQVAKWNGTKVWVKILDKESHKDPE  227 (294)
Q Consensus       155 ~~Ll~~ga~~---~~~~~t~l~~a~~~~~~~~l~~---~~~~~~~~~~~~~-~t~l~~A~~~g~~~~v~~Ll~~~~~~~~  227 (294)
                      ++|+.+|+++   |..|..|+..+-......++..   ...++++..-... .+.        -.++-.||. .|.....
T Consensus       123 ~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~m--------l~D~~q~l~-~G~~~d~  193 (527)
T KOG0505|consen  123 EYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTM--------LDDARQWLN-AGAELDA  193 (527)
T ss_pred             HHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHH--------HHHHHHHHh-ccccccc
Confidence            9999999985   6779999988855433322221   1111111110000 010        123445555 5544444


Q ss_pred             hhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccccc
Q 022605          228 RINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQ  285 (294)
Q Consensus       228 ~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~  285 (294)
                      ....|.|.+|.|+.+|+.++..+|+.++.+.        ..++..|.||||.|+.=++
T Consensus       194 ~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~--------~~~D~dgWtPlHAAA~Wg~  243 (527)
T KOG0505|consen  194 RHARGATALHVAAANGYTEVAALLLQAGYSV--------NIKDYDGWTPLHAAAHWGQ  243 (527)
T ss_pred             cccccchHHHHHHhhhHHHHHHHHHHhccCc--------ccccccCCCcccHHHHhhh
Confidence            3444899999999999999999999999874        4577889999999886554

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.74  E-value=3.2e-18  Score=116.49  Aligned_cols=93  Identities=32%  Similarity=0.507  Sum_probs=86.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 022605           74 MQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEV  153 (294)
Q Consensus        74 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~  153 (294)
                      .-+.|++.+|.++-|+..+..|.++|..- .|+||||+|+..|+.+++++|+..||+++.+|+.|-|||.-|+..||.++
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            45789999999999999999998888654 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCC
Q 022605          154 YNILKARGAKVPKT  167 (294)
Q Consensus       154 v~~Ll~~ga~~~~~  167 (294)
                      |++|++.|++-...
T Consensus        83 VklLL~~GAdrt~~   96 (117)
T KOG4214|consen   83 VKLLLQNGADRTIH   96 (117)
T ss_pred             HHHHHHcCccccee
Confidence            99999999997544

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.72  E-value=6.2e-18  Score=119.89  Aligned_cols=87  Identities=32%  Similarity=0.443  Sum_probs=72.5

Q ss_pred             cccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 022605           45 SFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLL  124 (294)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~L  124 (294)
                      .++..++.+.++.++........    |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus         3 ~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L   78 (89)
T PF12796_consen    3 IAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLL   78 (89)
T ss_dssp             HHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            44556666777776664433333    88999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCC
Q 022605          125 LSKKANIDARD  135 (294)
Q Consensus       125 l~~gad~~~~~  135 (294)
                      +++|++++.+|
T Consensus        79 l~~g~~~~~~n   89 (89)
T PF12796_consen   79 LEHGADVNIRN   89 (89)
T ss_dssp             HHTTT-TTSS-
T ss_pred             HHcCCCCCCcC
Confidence            99999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.69  E-value=4.7e-16  Score=128.70  Aligned_cols=129  Identities=35%  Similarity=0.426  Sum_probs=115.7

Q ss_pred             CCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc-----HHHHHHHHhCCC---CCCCCCCC
Q 022605           66 VPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGH-----VEVVKLLLSKKA---NIDARDRW  137 (294)
Q Consensus        66 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~-----~~~v~~Ll~~ga---d~~~~~~~  137 (294)
                      ...+..+.+++|.++..+..+++.++++.|++++.++..|.||||+|+..++     .+++++|++.|+   +.+..|..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            3455668899999999999999999999999999999999999999999999     999999999999   56666999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHh
Q 022605          138 GSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKI  217 (294)
Q Consensus       138 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~  217 (294)
                      |.||||+|+..|+.+++++|++.|++++..                            +..|.|+++.|+..++.++++.
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~----------------------------~~~g~t~l~~a~~~~~~~~~~~  198 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPNSR----------------------------NSYGVTALDPAAKNGRIELVKL  198 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCccc----------------------------ccCCCcchhhhcccchHHHHHH
Confidence            999999999999999999999998887543                            6677888888888888888888


Q ss_pred             hhccC
Q 022605          218 LDKES  222 (294)
Q Consensus       218 Ll~~~  222 (294)
                      ++..+
T Consensus       199 l~~~~  203 (235)
T COG0666         199 LLDKG  203 (235)
T ss_pred             HHhcC
Confidence            88654

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.68  E-value=5.2e-17  Score=149.54  Aligned_cols=112  Identities=29%  Similarity=0.318  Sum_probs=99.2

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCC-----------------------CCCCcHHHHHHHcCcHHHHHHH
Q 022605           68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSID-----------------------LDGRTALHIAACEGHVEVVKLL  124 (294)
Q Consensus        68 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-----------------------~~g~TpLh~A~~~g~~~~v~~L  124 (294)
                      ....|.||||+|+.+.+.++|++|++.||||+++.                       ..|..||-+||+.++.||+++|
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            44679999999999999999999999999998652                       1467899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCccccCCCC
Q 022605          125 LSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK-----VPKTKRTPMTVANPRE  179 (294)
Q Consensus       125 l~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~t~l~~a~~~~  179 (294)
                      +++|||++++|..|+|.||..+..-..+|.++++++|++     +|.+|-|||.+|+..+
T Consensus       260 l~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklG  319 (782)
T KOG3676|consen  260 LAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLG  319 (782)
T ss_pred             HhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhh
Confidence            999999999999999999999999999999999999998     2555777777776543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.67  E-value=4.3e-16  Score=148.45  Aligned_cols=102  Identities=37%  Similarity=0.487  Sum_probs=93.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 022605           74 MQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEV  153 (294)
Q Consensus        74 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~  153 (294)
                      +.|+.||..|+.++|+.|+++|+++|.+|..|.||||+||..|+.+++++|+++|+|++..|..|.||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHC-------CCCCCCC---CCCCcccc
Q 022605          154 YNILKAR-------GAKVPKT---KRTPMTVA  175 (294)
Q Consensus       154 v~~Ll~~-------ga~~~~~---~~t~l~~a  175 (294)
                      +++|+++       |++++..   |.+|+..+
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            9999998       6665433   66665544

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.67  E-value=8.5e-17  Score=148.16  Aligned_cols=186  Identities=19%  Similarity=0.154  Sum_probs=135.4

Q ss_pred             CccccccCCCCCccccCCCCCCC--------CC-CCCCCCchhHHHHHHHc---CCHHHHHHHHhcCCC-CC---C-CCC
Q 022605           41 NMRFSFGRQSSLDPIRRSPVQDE--------LT-VPENLDSTMQLLFMACR---GDVKGVEDLLNEGSD-VN---S-IDL  103 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~-~~---~-~~~  103 (294)
                      ...+....++..+....+.....        +. ......|.|.||.|..+   ++.++++.|++.-.. +|   . -..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            45566666666666655555442        22 33467899999999984   567899999985321 22   1 126


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhCCCCCCCC---------C--------------CCCCCHHHHHHHcCCHHHHHHHHHC
Q 022605          104 DGRTALHIAACEGHVEVVKLLLSKKANIDAR---------D--------------RWGSTAAADAKYYGNVEVYNILKAR  160 (294)
Q Consensus       104 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~---------~--------------~~g~t~L~~A~~~g~~~~v~~Ll~~  160 (294)
                      .|+||||+|+.+.+.++|++|++.||||+++         |              ..|..||.+|+-.++.+++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            7999999999999999999999999999753         1              2578899999999999999999999


Q ss_pred             CCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCC--ChHhhhhhhhHHHH
Q 022605          161 GAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHK--DPERINAFTHELTI  238 (294)
Q Consensus       161 ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~t~l~~  238 (294)
                      |||++.+                            |..|+|.||..+..-..++-+++++.++.  ....++.|-|||..
T Consensus       263 gAd~~aq----------------------------DS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtL  314 (782)
T KOG3676|consen  263 GADPNAQ----------------------------DSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTL  314 (782)
T ss_pred             CCCCCcc----------------------------ccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHH
Confidence            9998655                            55566666666666566666666666655  44455566677777


Q ss_pred             HHHcCCCchhhhhhhh
Q 022605          239 VEKARHPNVVQFVGAV  254 (294)
Q Consensus       239 a~~~~~~~iv~~L~~~  254 (294)
                      |++.|+.+|.+.+.+.
T Consensus       315 AaklGk~emf~~ile~  330 (782)
T KOG3676|consen  315 AAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHhhhHHHHHHHHHh
Confidence            7777777766666655

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.66  E-value=9.1e-17  Score=103.16  Aligned_cols=55  Identities=49%  Similarity=0.613  Sum_probs=33.1

Q ss_pred             HHhcC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 022605           91 LLNEG-SDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA  145 (294)
Q Consensus        91 Ll~~g-~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A  145 (294)
                      ||++| +++|.+|..|.||||+||..|+.++|++|++.|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            67888 89999999999999999999999999999999999999999999999987

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.64  E-value=1e-15  Score=114.70  Aligned_cols=122  Identities=31%  Similarity=0.383  Sum_probs=112.2

Q ss_pred             CCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 022605           37 PRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEG  116 (294)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g  116 (294)
                      ..+.++++.+...++.+.+..++..+......+..|.||||.|+..++.+++++|++.|++++..+..|.||+|+|+..+
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~   84 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG   84 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            45667788888888888888888877777788889999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 022605          117 HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILK  158 (294)
Q Consensus       117 ~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  158 (294)
                      +.+++++|+++|.+++..+..|.||+++|...++.+++++|+
T Consensus        85 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          85 NLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999999999999999999999999999999884

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.64  E-value=1.3e-16  Score=108.63  Aligned_cols=95  Identities=27%  Similarity=0.348  Sum_probs=82.3

Q ss_pred             CCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhC
Q 022605           48 RQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK  127 (294)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~  127 (294)
                      ..|.++.+++....+ .+.+....|++|||+||-.|+++++++|+..|++++.+|+.|-|||.-|+..||.+||++|+++
T Consensus        11 kNG~~DeVk~~v~~g-~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~   89 (117)
T KOG4214|consen   11 KNGEIDEVKQSVNEG-LNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQN   89 (117)
T ss_pred             ccCcHHHHHHHHHcc-ccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHc
Confidence            345666777666666 4555566899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHH
Q 022605          128 KANIDARDRWGSTAAA  143 (294)
Q Consensus       128 gad~~~~~~~g~t~L~  143 (294)
                      |||-.....+|.+.+-
T Consensus        90 GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   90 GADRTIHAPDGTALIE  105 (117)
T ss_pred             CcccceeCCCchhHHh
Confidence            9998888888866554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.63  E-value=6.8e-16  Score=98.51  Aligned_cols=54  Identities=43%  Similarity=0.657  Sum_probs=29.3

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 022605           72 STMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLL  125 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll  125 (294)
                      |.||||+||..|+.+++++|+++|.|+|.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            455666666666666666666666666666666666666666666666666554

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=3.1e-16  Score=137.65  Aligned_cols=104  Identities=33%  Similarity=0.358  Sum_probs=88.7

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q 022605           72 STMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNV  151 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~  151 (294)
                      ....|.-|+..|-+++|+-.+..--|+...+..|.|+||-|++.||.+||++||+.|++||+.|.+||||||.|+..++.
T Consensus       550 PLaLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  550 PLALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             hHHHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCch
Confidence            44557788889999999999987778888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCC----CCCCcccc
Q 022605          152 EVYNILKARGAKVPKT----KRTPMTVA  175 (294)
Q Consensus       152 ~~v~~Ll~~ga~~~~~----~~t~l~~a  175 (294)
                      .+++.|++.|+.+-..    +.|+..-+
T Consensus       630 ~~ckqLVe~GaavfAsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLSDMETAAEKC  657 (752)
T ss_pred             HHHHHHHhccceEEeeecccccchhhhc
Confidence            9999999999887433    55665443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.61  E-value=1.5e-15  Score=96.93  Aligned_cols=54  Identities=44%  Similarity=0.612  Sum_probs=46.8

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 022605          105 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILK  158 (294)
Q Consensus       105 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  158 (294)
                      |.||||+||..|+.+++++|+++|+|++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999999999999999999999999999999996

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.57  E-value=6e-15  Score=122.03  Aligned_cols=122  Identities=26%  Similarity=0.330  Sum_probs=108.4

Q ss_pred             CCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCC-----HHHHHHHHhcCC---CCCCCCCCCCcHHHH
Q 022605           40 NNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGD-----VKGVEDLLNEGS---DVNSIDLDGRTALHI  111 (294)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~-----~~~v~~Ll~~g~---~~~~~~~~g~TpLh~  111 (294)
                      ....+..+..+....+..+...+......+.+|.||||+|+..|+     .+++++|++.|+   +.+.+|..|.||||+
T Consensus        74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~  153 (235)
T COG0666          74 RLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHW  153 (235)
T ss_pred             cCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHH
Confidence            334444444556666667777888888899999999999999999     999999999999   566679999999999


Q ss_pred             HHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Q 022605          112 AACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG  161 (294)
Q Consensus       112 A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  161 (294)
                      |+..|+.+++++|++.|++++..+..|.|++++|+..++.++++.+++.+
T Consensus       154 A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         154 AALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999976

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.57  E-value=3.3e-15  Score=122.35  Aligned_cols=118  Identities=25%  Similarity=0.214  Sum_probs=103.6

Q ss_pred             CccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHcCcHH
Q 022605           41 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNS-IDLDGRTALHIAACEGHVE  119 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~-~~~~g~TpLh~A~~~g~~~  119 (294)
                      ..++.....+..+....++......+..|..|.++|..|+.+|+.+.|++||+.|+|+|. ++..++||||+|+..|+.+
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~d   93 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQD   93 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCch
Confidence            455666666777766667766666778899999999999999999999999999999985 4577999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 022605          120 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILK  158 (294)
Q Consensus       120 ~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  158 (294)
                      +.++|++.|+.+...+.-|+|+-..|++-|+.++|..+=
T Consensus        94 vcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   94 VCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            999999999999999999999999999999998887653

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=8.9e-15  Score=128.58  Aligned_cols=118  Identities=25%  Similarity=0.207  Sum_probs=102.9

Q ss_pred             cccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHH
Q 022605           43 RFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVK  122 (294)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~  122 (294)
                      ++.++..|.++.+.+.+..-.+....|..|.|+||-|+..||.+||++||+.|++||+.|.+||||||+|+.++++.+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            34556677788888877777778888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCC-CCCCCHHHHH--HHcCCHHHHHHHHHC
Q 022605          123 LLLSKKANIDARD-RWGSTAAADA--KYYGNVEVYNILKAR  160 (294)
Q Consensus       123 ~Ll~~gad~~~~~-~~g~t~L~~A--~~~g~~~~v~~Ll~~  160 (294)
                      .|++.|+-|-+.. .++.||..-+  ...|..+|.+||-..
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            9999998876654 5688888776  456889999999753

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.51  E-value=4.6e-14  Score=115.70  Aligned_cols=94  Identities=28%  Similarity=0.309  Sum_probs=87.1

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcC
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR-DRWGSTAAADAKYYG  149 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-~~~g~t~L~~A~~~g  149 (294)
                      ....||..+..+|+.+-...||+---++|.+|.+|.|||..|+..|+.++|++|+++|+|+|.. +..++||||+|+..|
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            3467999999999999999999876679999999999999999999999999999999999964 577999999999999


Q ss_pred             CHHHHHHHHHCCCCC
Q 022605          150 NVEVYNILKARGAKV  164 (294)
Q Consensus       150 ~~~~v~~Ll~~ga~~  164 (294)
                      +.++..+|++.|+..
T Consensus        91 n~dvcrllldaGa~~  105 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARM  105 (396)
T ss_pred             CchHHHHHHhccCcc
Confidence            999999999999875

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.48  E-value=4.2e-14  Score=90.71  Aligned_cols=50  Identities=32%  Similarity=0.356  Sum_probs=32.9

Q ss_pred             CCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 022605           63 ELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIA  112 (294)
Q Consensus        63 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A  112 (294)
                      ......|..|.||||+||..|+.++|++|++.|+|++.+|..|+||||+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45667889999999999999999999999999999999999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.45  E-value=1.2e-13  Score=131.90  Aligned_cols=104  Identities=24%  Similarity=0.245  Sum_probs=94.9

Q ss_pred             cccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHH
Q 022605           43 RFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVK  122 (294)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~  122 (294)
                      ++.++..++.+.++.++..+...+..|..|.||||+||..|+.++|++|+++|+++|.+|..|.||||+|+..|+.++++
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~  165 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQ  165 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHH
Confidence            45667789999999999888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhC-------CCCCCCCCCCCCCHHHHHH
Q 022605          123 LLLSK-------KANIDARDRWGSTAAADAK  146 (294)
Q Consensus       123 ~Ll~~-------gad~~~~~~~g~t~L~~A~  146 (294)
                      +|+++       |++++..+..|.+|+..+.
T Consensus       166 ~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        166 LLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999       8888888888887766554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.21  E-value=1.9e-11  Score=106.58  Aligned_cols=97  Identities=40%  Similarity=0.675  Sum_probs=90.1

Q ss_pred             CCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCCCHHHHH
Q 022605           67 PENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDARDRWGSTAAADA  145 (294)
Q Consensus        67 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~~~~g~t~L~~A  145 (294)
                      ....++..++++||..|++..++-+.-.|.|++.+|.+.+|+||.||..|+++++++|++. +.|++.+|++|+|||.-|
T Consensus       501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  501 PRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             cccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            4456677899999999999999999999999999999999999999999999999999997 899999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCC
Q 022605          146 KYYGNVEVYNILKARGAK  163 (294)
Q Consensus       146 ~~~g~~~~v~~Ll~~ga~  163 (294)
                      ...+|.+++++|-+.-..
T Consensus       581 ~~F~h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQYP  598 (622)
T ss_pred             HhcCcHHHHHHHHHHhcc
Confidence            999999999999986443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.16  E-value=1.8e-10  Score=101.12  Aligned_cols=89  Identities=28%  Similarity=0.266  Sum_probs=82.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 022605           74 MQLLFMACRGDVKGVEDLLNEGSDVNSID-LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVE  152 (294)
Q Consensus        74 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~  152 (294)
                      -.||-.++.|++++.--||..|+++|..+ ..|.||||.|+..|+.--+++|+-+|||+++.|.+|+||+.+|-..||.+
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            45999999999999999999999999888 56999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHCCC
Q 022605          153 VYNILKARGA  162 (294)
Q Consensus       153 ~v~~Ll~~ga  162 (294)
                      +.+-|++.-.
T Consensus       215 laeRl~e~~y  224 (669)
T KOG0818|consen  215 LAERLVEIQY  224 (669)
T ss_pred             HHHHHHHHHH
Confidence            8877776533

>PF13606 Ank_3: Ankyrin repeat

Probab=99.14  E-value=5.9e-11  Score=65.32  Aligned_cols=28  Identities=46%  Similarity=0.834  Sum_probs=18.4

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 022605          105 GRTALHIAACEGHVEVVKLLLSKKANID  132 (294)
Q Consensus       105 g~TpLh~A~~~g~~~~v~~Ll~~gad~~  132 (294)
                      |+||||+||+.|+.++|++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5666666666666666666666666665

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.13  E-value=2.5e-11  Score=112.33  Aligned_cols=84  Identities=25%  Similarity=0.222  Sum_probs=78.5

Q ss_pred             CCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHH
Q 022605           65 TVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSID-LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAA  143 (294)
Q Consensus        65 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~  143 (294)
                      .+..|..|+|+||+|+..|..++++|||++|+|++.+| ..|+||||-|+.+|++||+-.|+++|+.+...|.+|.+||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            34567889999999999999999999999999999999 56999999999999999999999999999999999999999


Q ss_pred             HHHHc
Q 022605          144 DAKYY  148 (294)
Q Consensus       144 ~A~~~  148 (294)
                      +-++-
T Consensus       125 ~~~r~  129 (1267)
T KOG0783|consen  125 FLSRV  129 (1267)
T ss_pred             HHhhc
Confidence            88773

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.04  E-value=3.5e-10  Score=64.02  Aligned_cols=32  Identities=59%  Similarity=0.874  Sum_probs=20.1

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC
Q 022605          104 DGRTALHIAACEGHVEVVKLLLSKKANIDARD  135 (294)
Q Consensus       104 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~  135 (294)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            35666666666666666666666666666554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=99.02  E-value=3.6e-10  Score=62.16  Aligned_cols=30  Identities=33%  Similarity=0.544  Sum_probs=28.3

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNS  100 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~  100 (294)
                      +|+||||+||..|+.++|++||++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999984

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.01  E-value=1.1e-09  Score=97.91  Aligned_cols=92  Identities=37%  Similarity=0.413  Sum_probs=82.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCC--CC--CCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q 022605           74 MQLLFMACRGDVKGVEDLLNEGSD--VN--SIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYG  149 (294)
Q Consensus        74 t~L~~Aa~~g~~~~v~~Ll~~g~~--~~--~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g  149 (294)
                      ..|..|+...++..+-+||.+|..  +|  ..+.+|.|+||+||..|++.+.++|+-+|+|+..+|..|.|+|.||-+.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            358888889999999999999843  44  34577899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCC
Q 022605          150 NVEVYNILKARGAKVP  165 (294)
Q Consensus       150 ~~~~v~~Ll~~ga~~~  165 (294)
                      ..+++..|+++|...+
T Consensus       706 sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPDE  721 (749)
T ss_pred             cHHHHHHHHHcCCCcc
Confidence            9999999999997643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.97  E-value=5.1e-10  Score=99.83  Aligned_cols=98  Identities=28%  Similarity=0.377  Sum_probs=73.6

Q ss_pred             CCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCC
Q 022605           63 ELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSD--VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST  140 (294)
Q Consensus        63 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t  140 (294)
                      ......+.+..+.||+|+..|+-++|+|+|++|..  ++..|..|.|+||-|+..++..++++|++.|+.+...|..|.|
T Consensus       890 g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~t  969 (1004)
T KOG0782|consen  890 GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKT  969 (1004)
T ss_pred             CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCC
Confidence            33444566677778888888888888888887753  5666777888888888888888888888888877777888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHC
Q 022605          141 AAADAKYYGNVEVYNILKAR  160 (294)
Q Consensus       141 ~L~~A~~~g~~~~v~~Ll~~  160 (294)
                      |-.-|-+.|..+.+.||-.+
T Consensus       970 p~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  970 PQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hHHHHHhcCCchHHHHHhhh
Confidence            88888888888877777643

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.96  E-value=1.1e-09  Score=61.90  Aligned_cols=33  Identities=36%  Similarity=0.473  Sum_probs=30.9

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDL  103 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~  103 (294)
                      +|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999998763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.94  E-value=2.5e-10  Score=105.89  Aligned_cols=90  Identities=29%  Similarity=0.442  Sum_probs=78.2

Q ss_pred             HHHHHh-cCCC-CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC
Q 022605           88 VEDLLN-EGSD-VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR-WGSTAAADAKYYGNVEVYNILKARGAKV  164 (294)
Q Consensus        88 v~~Ll~-~g~~-~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  164 (294)
                      ++-+++ .+.+ .|.+|..|+|+||+|+..+..++++||+++|+|++.+|. .|+||||-|+..|+.+++-+||++|+.+
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL  112 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL  112 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce
Confidence            444443 3333 678899999999999999999999999999999999985 6999999999999999999999999886


Q ss_pred             ---CCCCCCCccccCC
Q 022605          165 ---PKTKRTPMTVANP  177 (294)
Q Consensus       165 ---~~~~~t~l~~a~~  177 (294)
                         |..|..||...++
T Consensus       113 ~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EEecccCCCHHHHHhh
Confidence               5669999987765

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.91  E-value=3.4e-09  Score=94.13  Aligned_cols=87  Identities=26%  Similarity=0.341  Sum_probs=72.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHh--cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q 022605           74 MQLLFMACRGDVKGVEDLLN--EGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNV  151 (294)
Q Consensus        74 t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~  151 (294)
                      -|||+++.....+....++.  .+..++.+|..|.||||+|+..|+.+.++.|+.+|||+..+|+.||+|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            46899999888877666443  3456888899999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHC
Q 022605          152 EVYNILKAR  160 (294)
Q Consensus       152 ~~v~~Ll~~  160 (294)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            877666643

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.86  E-value=6.9e-10  Score=97.05  Aligned_cols=88  Identities=31%  Similarity=0.271  Sum_probs=82.4

Q ss_pred             CccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHH
Q 022605           41 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHVE  119 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~TpLh~A~~~g~~~  119 (294)
                      ...++++..|++..++++..++.+....|.+.+|+||.||..|+++++++||+. +.+++.+|.+|+|||--|...+|.+
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~  587 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKE  587 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHH
Confidence            345788899999999999999999999999999999999999999999999986 6999999999999999999999999


Q ss_pred             HHHHHHhCC
Q 022605          120 VVKLLLSKK  128 (294)
Q Consensus       120 ~v~~Ll~~g  128 (294)
                      ++++|-+.-
T Consensus       588 v~k~L~~~~  596 (622)
T KOG0506|consen  588 VVKLLEEAQ  596 (622)
T ss_pred             HHHHHHHHh
Confidence            999998753

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.67  E-value=6.7e-08  Score=75.22  Aligned_cols=66  Identities=32%  Similarity=0.262  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Q 022605           95 GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKYYGNVEVYNILKAR  160 (294)
Q Consensus        95 g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  160 (294)
                      +.++|++|..|||||+.|+..|+.+.|.||+.+| ++|...|..|.+++.+|-..|..++++.|.+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            3566777777777777777777777777777777 67777777777777777777777777777765

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.66  E-value=2.1e-08  Score=96.07  Aligned_cols=91  Identities=27%  Similarity=0.342  Sum_probs=49.7

Q ss_pred             HHHHHHHHhcCCCCCCCC--CCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Q 022605           85 VKGVEDLLNEGSDVNSID--LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA  162 (294)
Q Consensus        85 ~~~v~~Ll~~g~~~~~~~--~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  162 (294)
                      ..++..=..+++++|..+  ..|.|+||.|+..|...++++|+++|+++|..|..|.||+|.+...|+...+..|+++|+
T Consensus       634 ~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a  713 (785)
T KOG0521|consen  634 LPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGA  713 (785)
T ss_pred             hhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccc
Confidence            333333334444444322  445556666666666666666666666666666666666666666666666666666655


Q ss_pred             CCC---CCCCCCcccc
Q 022605          163 KVP---KTKRTPMTVA  175 (294)
Q Consensus       163 ~~~---~~~~t~l~~a  175 (294)
                      +.+   ..|.+|+++|
T Consensus       714 ~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  714 DPNAFDPDGKLPLDIA  729 (785)
T ss_pred             cccccCccCcchhhHH
Confidence            543   2255555555

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.66  E-value=1.5e-08  Score=94.91  Aligned_cols=235  Identities=12%  Similarity=0.055  Sum_probs=138.3

Q ss_pred             cccCCCCCccccCCCCCCCC----CCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 022605           45 SFGRQSSLDPIRRSPVQDEL----TVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEV  120 (294)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~  120 (294)
                      .++..|+...++..++....    .+..|.-|+++|+.|..+-+.+++++|++++..+       .-+|.+|+..|..++
T Consensus        31 ~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~  103 (822)
T KOG3609|consen   31 LAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPL  103 (822)
T ss_pred             HHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHH
Confidence            34445666666555443332    3456777888999999888999999998876554       238888888899999


Q ss_pred             HHHHHhCCCCCC----------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCCCCcccccCc
Q 022605          121 VKLLLSKKANID----------ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNP  187 (294)
Q Consensus       121 v~~Ll~~gad~~----------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~~~~~~l~~~  187 (294)
                      |+.++.+-....          ..-.-+.|||.+||..++.||+++|+++|+++...   .+.+-.+-......++ ...
T Consensus       104 VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~~C~C~~C~~~~~~dsl-hS~  182 (822)
T KOG3609|consen  104 VELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDIRCECKTCKRETVTDSL-HSL  182 (822)
T ss_pred             HHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcccccCchHhhhccccCCc-chH
Confidence            999888743221          11235679999999999999999999999987544   1111111111111111 222


Q ss_pred             chhhhhcccCCCCCceeeeeecCc-hhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEec
Q 022605          188 LELQVRKADGITKGSYQVAKWNGT-KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY  266 (294)
Q Consensus       188 ~~~~~~~~~~~~~t~l~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~  266 (294)
                      ..+++-..-.   .|-.++..... ....-.|-..-..-.....++.+.+.-..++.....+.+|..+....++-++..+
T Consensus       183 srin~yraLa---Spa~i~LsS~DPiltAf~LS~eL~~La~~E~Efk~dY~~Ls~qcq~F~v~LLdq~r~s~Ele~iLn~  259 (822)
T KOG3609|consen  183 SRVNIYRALA---SPALIWLSSDDPILTAFALSWDLQQLASDELEFKEDYRDLSMQCQRFAVDLLDQARTSDELEMILNN  259 (822)
T ss_pred             HHHHHHHHhh---cHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHcC
Confidence            2222211110   11111111111 1111111111111222345666777777777778888899888777666555544


Q ss_pred             CCCCC-----CCcccccccccccccccCC
Q 022605          267 HAKVS-----MPITPFLTLSFHKQTHTSG  290 (294)
Q Consensus       267 ~~~g~-----l~~t~l~~a~~n~~~~~~~  290 (294)
                      ..+.+     .+..-|-+|+.+.|...|-
T Consensus       260 ~~~~~~~~~~~sl~RLklAIkyeqK~FVa  288 (822)
T KOG3609|consen  260 RNNCPERMTRISLPRLKLAIKYEQKEFVA  288 (822)
T ss_pred             CCCCcccccccccHHHHHHHHHhhhheec
Confidence            44433     6777888999998877654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.65  E-value=2.9e-08  Score=88.91  Aligned_cols=89  Identities=27%  Similarity=0.311  Sum_probs=70.1

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHH
Q 022605           76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN--IDARDRWGSTAAADAKYYGNVEV  153 (294)
Q Consensus        76 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~~~~g~t~L~~A~~~g~~~~  153 (294)
                      +..|+..+++--++.+-.+|.++-.++.+..|.||+|+..|+-++|+|++++|..  ++..|..|.|+||-|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            5667777776666666667888777888888888888888888888888888753  45567788888888888888888


Q ss_pred             HHHHHHCCCCC
Q 022605          154 YNILKARGAKV  164 (294)
Q Consensus       154 v~~Ll~~ga~~  164 (294)
                      ..+|++.|+.+
T Consensus       950 c~~lvdagasl  960 (1004)
T KOG0782|consen  950 CQLLVDAGASL  960 (1004)
T ss_pred             HHHHHhcchhh
Confidence            88888888775

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.64  E-value=5.9e-08  Score=91.04  Aligned_cols=135  Identities=22%  Similarity=0.168  Sum_probs=104.6

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhcC----CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNEG----SDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  146 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~g----~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~  146 (294)
                      .+.--...|+++|+...|+..++..    .++|+.|.-|+++|+.|+.+.+.+++++|++++..+       ..+|.+|+
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI   96 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAI   96 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHH
Confidence            3445688999999999999999752    568899999999999999999999999999986544       35999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCCh
Q 022605          147 YYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDP  226 (294)
Q Consensus       147 ~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~  226 (294)
                      ..|..++|+.++.+-......+.     +...             ....-..+-||+.+||..++.||++.|+++|+..+
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~-----~~d~-------------~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLER-----SGDA-------------NSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhcc-----cccc-------------CcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            99999999999987543322111     1000             01122334689999999999999999999998665


Q ss_pred             Hhhh
Q 022605          227 ERIN  230 (294)
Q Consensus       227 ~~~~  230 (294)
                      ..-+
T Consensus       159 ~PH~  162 (822)
T KOG3609|consen  159 IPHD  162 (822)
T ss_pred             CCcc
Confidence            4443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.63  E-value=9.5e-08  Score=81.80  Aligned_cols=85  Identities=27%  Similarity=0.261  Sum_probs=67.8

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 022605           73 TMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVE  152 (294)
Q Consensus        73 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~  152 (294)
                      .--|..||+.|+.+.|++|++.|.++|++|....+||.+|+..||.++|++|+++||-...-..+|.-++ +++.+  ..
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~-YgaLn--d~  113 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH-YGALN--DR  113 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh-hhhhh--HH
Confidence            3459999999999999999999999999999999999999999999999999999986655445665543 34333  33


Q ss_pred             HHHHHHHC
Q 022605          153 VYNILKAR  160 (294)
Q Consensus       153 ~v~~Ll~~  160 (294)
                      |-+.|+.+
T Consensus       114 IR~mllsy  121 (516)
T KOG0511|consen  114 IRRMLLSY  121 (516)
T ss_pred             HHHHHHHH
Confidence            34444443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.58  E-value=9.1e-08  Score=85.88  Aligned_cols=66  Identities=30%  Similarity=0.293  Sum_probs=61.8

Q ss_pred             CCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 022605           67 PENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID  132 (294)
Q Consensus        67 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~  132 (294)
                      ..+.+|.|+||.||..|++.+.++||=+|+|+.++|..|.|+|.+|-+.|..+|+..|+++|+..+
T Consensus       656 ~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  656 CGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             ccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            356778999999999999999999999999999999999999999999999999999999998643

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.57  E-value=4.8e-08  Score=86.15  Aligned_cols=87  Identities=22%  Similarity=0.147  Sum_probs=77.2

Q ss_pred             CCccccccCCCCCccccCCCCCCCCCCCCC-CCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q 022605           40 NNMRFSFGRQSSLDPIRRSPVQDELTVPEN-LDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHV  118 (294)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~  118 (294)
                      +..++..++.++.+...+++..+...+... ..|.||||.||..|+..-+++|+=.|+|+++.|.+|.||+.+|-..||-
T Consensus       134 srQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence            445677788899999999999998887664 5699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 022605          119 EVVKLLLS  126 (294)
Q Consensus       119 ~~v~~Ll~  126 (294)
                      ++.+-|++
T Consensus       214 ~laeRl~e  221 (669)
T KOG0818|consen  214 ELAERLVE  221 (669)
T ss_pred             HHHHHHHH
Confidence            88777765

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.50  E-value=2.3e-07  Score=82.75  Aligned_cols=67  Identities=21%  Similarity=0.290  Sum_probs=61.2

Q ss_pred             CCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhC
Q 022605           61 QDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK  127 (294)
Q Consensus        61 ~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~  127 (294)
                      ........|..|.||||.|+..|+.+.++.|+.+|+++-.++..||+|||.|+..|+.+++..++.+
T Consensus        44 ~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   44 VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            3445667788999999999999999999999999999999999999999999999999999888865

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.45  E-value=4.3e-07  Score=77.89  Aligned_cols=60  Identities=28%  Similarity=0.395  Sum_probs=56.7

Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 022605          108 ALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT  167 (294)
Q Consensus       108 pLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  167 (294)
                      -|..||+.|..+.|++|++.|.+||++|....+||.+|+..||.++|++|+++||-.+..
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rd   98 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRD   98 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccccc
Confidence            588999999999999999999999999999999999999999999999999999977544

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.40  E-value=2.4e-07  Score=88.82  Aligned_cols=110  Identities=25%  Similarity=0.216  Sum_probs=87.3

Q ss_pred             CCCCCCchhHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCCCHHH
Q 022605           66 VPENLDSTMQLLFMACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHVEVVKLLLS-KKANIDARDRWGSTAAA  143 (294)
Q Consensus        66 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~~~~g~t~L~  143 (294)
                      ......|.|.||.++..+....++.+++- |-.....|.+|.-.+|+ |..++.+++-+|+. +|..++.+|..||||||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            34567799999999999999999999985 55445556667777777 55677777766665 48899999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCC---------CCCCccccC
Q 022605          144 DAKYYGNVEVYNILKARGAKVPKT---------KRTPMTVAN  176 (294)
Q Consensus       144 ~A~~~g~~~~v~~Ll~~ga~~~~~---------~~t~l~~a~  176 (294)
                      +|+..|+..++..|++.|++....         |.|+-.+|.
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~  688 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLAR  688 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhh
Confidence            999999999999999988875321         566655553

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.35  E-value=1.7e-06  Score=67.57  Aligned_cols=73  Identities=19%  Similarity=0.141  Sum_probs=65.0

Q ss_pred             CCCCCCCCchhHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCC
Q 022605           64 LTVPENLDSTMQLLFMACRGDVKGVEDLLNEG-SDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR  136 (294)
Q Consensus        64 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~  136 (294)
                      .++..|..|+|||+.||..|+.+.|.||+++| +.+...|..|.+++.+|-..|+.++|..|.+.-.+-...+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n   77 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN   77 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence            45678889999999999999999999999999 89999999999999999999999999999998555444443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.35  E-value=4.4e-07  Score=87.22  Aligned_cols=88  Identities=34%  Similarity=0.410  Sum_probs=82.2

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  150 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  150 (294)
                      .|.|+||.|+..|...++++|+++|+++|.+|..|.||||.+...|+...+..|+++|++.++.+..|.+|+++|....+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             HHHHHHHH
Q 022605          151 VEVYNILK  158 (294)
Q Consensus       151 ~~~v~~Ll  158 (294)
                      .+++-++.
T Consensus       735 ~d~~~l~~  742 (785)
T KOG0521|consen  735 ADIVLLLR  742 (785)
T ss_pred             ccHHHHHh
Confidence            77665554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.95  E-value=2e-06  Score=82.68  Aligned_cols=116  Identities=20%  Similarity=0.127  Sum_probs=87.4

Q ss_pred             ccccCCCCCccccCCCCC-CCCCCCCCCCchhHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 022605           44 FSFGRQSSLDPIRRSPVQ-DELTVPENLDSTMQLLFMACRGDVKGVEDLL-NEGSDVNSIDLDGRTALHIAACEGHVEVV  121 (294)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll-~~g~~~~~~~~~g~TpLh~A~~~g~~~~v  121 (294)
                      +.++..+..-.+..+++. +......+.+|.-.+|+ |..++++.+-+++ -.|..++.+|..||||||||+..|+..++
T Consensus       579 hL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~  657 (975)
T KOG0520|consen  579 HLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLV  657 (975)
T ss_pred             HHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHH
Confidence            333334444444444444 55566677778888888 4456666655555 46888999999999999999999999999


Q ss_pred             HHHHhCCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHC
Q 022605          122 KLLLSKKANIDA------RDRWGSTAAADAKYYGNVEVYNILKAR  160 (294)
Q Consensus       122 ~~Ll~~gad~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~  160 (294)
                      ..|++.|++...      ....|.|+-.+|-.+|+..+..||-+.
T Consensus       658 a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  658 ASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999988876543      345799999999999999998888765

>smart00248 ANK ankyrin repeats

Probab=97.63  E-value=0.00011  Score=38.82  Aligned_cols=27  Identities=67%  Similarity=0.938  Sum_probs=15.5

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhCCCCC
Q 022605          105 GRTALHIAACEGHVEVVKLLLSKKANI  131 (294)
Q Consensus       105 g~TpLh~A~~~g~~~~v~~Ll~~gad~  131 (294)
                      |.||||+|+..++.+++++|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455666666666666666666555543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.56  E-value=0.00016  Score=64.60  Aligned_cols=71  Identities=27%  Similarity=0.244  Sum_probs=54.3

Q ss_pred             HHHHHHHHhcCCCCCC------CCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 022605           85 VKGVEDLLNEGSDVNS------IDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILK  158 (294)
Q Consensus        85 ~~~v~~Ll~~g~~~~~------~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  158 (294)
                      ...+++|.+++.+.|.      .+.--.|+||+|+..|..++|.+||+.|+|+...|..|.||..++.   +.++-..++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence            5678888888776543      2344568899999999999999999999999888989999988876   455555554

>smart00248 ANK ankyrin repeats

Probab=97.33  E-value=0.0004  Score=36.47  Aligned_cols=29  Identities=34%  Similarity=0.541  Sum_probs=26.1

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhcCCCCC
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNEGSDVN   99 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~   99 (294)
                      .|.||||+|+..|+.++++.|++.|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36899999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.95  E-value=0.00079  Score=60.26  Aligned_cols=69  Identities=16%  Similarity=0.148  Sum_probs=56.8

Q ss_pred             cHHHHHHHHhCCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCccccCCCCCccccc
Q 022605          117 HVEVVKLLLSKKANIDA------RDRWGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVANPREVPEYEL  185 (294)
Q Consensus       117 ~~~~v~~Ll~~gad~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---~~~~t~l~~a~~~~~~~~l~  185 (294)
                      -.+.+++|.+++.+.|.      .+.-..|+||+|+..|..++|.+||+.|+|+.   -.|.||..+++..++...++
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~~F~  480 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKSIFI  480 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHHHHH
Confidence            46789999999887753      34557799999999999999999999999984   44999999999777665554

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=96.17  E-value=0.0054  Score=54.63  Aligned_cols=93  Identities=35%  Similarity=0.556  Sum_probs=68.1

Q ss_pred             cccCcchhhhhcccCCCC-CceeeeeecCch-hhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCC-C
Q 022605          183 YELNPLELQVRKADGITK-GSYQVAKWNGTK-VWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI-P  259 (294)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~-t~l~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~-~  259 (294)
                      +.++..++.+....+.|. ..++.+.+.|.. ..++.+......+.. .+.+...+.+..+..|++||++++.+...+ .
T Consensus        36 ~~i~~~~l~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~-~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~  114 (362)
T KOG0192|consen   36 EEIDPDELPIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDES-RKAFRREASLLSRLRHPNIVQFYGACTSPPGS  114 (362)
T ss_pred             eecChHHhhhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHH-HHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCc
Confidence            334333344444444443 567899999998 777777644333333 667888999999999999999999999888 7


Q ss_pred             eEEEEecCCCCCCCccc
Q 022605          260 MMIVLEYHAKVSMPITP  276 (294)
Q Consensus       260 l~~~~e~~~~g~l~~t~  276 (294)
                      +.++|||+++|+|..-.
T Consensus       115 ~~iVtEy~~~GsL~~~l  131 (362)
T KOG0192|consen  115 LCIVTEYMPGGSLSVLL  131 (362)
T ss_pred             eEEEEEeCCCCcHHHHH
Confidence            99999999999987544

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.94  E-value=0.074  Score=43.32  Aligned_cols=92  Identities=14%  Similarity=0.146  Sum_probs=68.1

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcCCCCCCCC----CCCCcHHHHHH--HcCcHHHHHHHHhCC-CCCCC---CCCCCCCH
Q 022605           72 STMQLLFMACRGDVKGVEDLLNEGSDVNSID----LDGRTALHIAA--CEGHVEVVKLLLSKK-ANIDA---RDRWGSTA  141 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~----~~g~TpLh~A~--~~g~~~~v~~Ll~~g-ad~~~---~~~~g~t~  141 (294)
                      -.++|.+|..++.-+++.+|+.+- +....|    ..+.--+-++.  .+.+..++++++++| ++||.   .-+.|.|-
T Consensus       179 A~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            457888999889999999999741 111111    12222344443  356778999999997 57774   35789999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC
Q 022605          142 AADAKYYGNVEVYNILKARGAKV  164 (294)
Q Consensus       142 L~~A~~~g~~~~v~~Ll~~ga~~  164 (294)
                      |.-|+..+..+++.+||++||-.
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCccc
Confidence            99999999999999999999854

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=95.71  E-value=0.026  Score=52.81  Aligned_cols=90  Identities=23%  Similarity=0.449  Sum_probs=65.2

Q ss_pred             cccccCcchhhhhcccCCCC-CceeeeeecCc--hhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCC
Q 022605          181 PEYELNPLELQVRKADGITK-GSYQVAKWNGT--KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       181 ~~~l~~~~~~~~~~~~~~~~-t~l~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~  257 (294)
                      .++.+++.++.+..+.+.|+ .-.+..+|..+  ...|+.|.    .+.....++....-+.....|+++|++|+.|+..
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLK----EDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~E  335 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHE  335 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhh----hcchhHHHHHHHHHHHHhhcCccHHHHhhhhccC
Confidence            45666666666667666665 44566666654  34566665    4445555666665666677999999999999999


Q ss_pred             CCeEEEEecCCCCCCCc
Q 022605          258 IPMMIVLEYHAKVSMPI  274 (294)
Q Consensus       258 ~~l~~~~e~~~~g~l~~  274 (294)
                      ++++|++|||..|+|-+
T Consensus       336 pPFYIiTEfM~yGNLLd  352 (1157)
T KOG4278|consen  336 PPFYIITEFMCYGNLLD  352 (1157)
T ss_pred             CCeEEEEecccCccHHH
Confidence            99999999999998753

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.97  E-value=0.019  Score=55.13  Aligned_cols=60  Identities=25%  Similarity=0.483  Sum_probs=51.2

Q ss_pred             hhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          212 KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       212 ~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      ...||.|.+.  .......+++..+.+.+...|++||++|+.|....|+.++.|||..|+|.
T Consensus       518 lVAVK~LKd~--a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~MvFEYm~~GDL~  577 (774)
T KOG1026|consen  518 LVAVKALKDK--AENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMVFEYMDHGDLH  577 (774)
T ss_pred             ehhHhhhccc--ccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEEEEecccccHH
Confidence            3567777533  44446678899999999999999999999999999999999999999986

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.38  E-value=0.1  Score=42.57  Aligned_cols=48  Identities=31%  Similarity=0.304  Sum_probs=42.7

Q ss_pred             cCCHHHHHHHHhcC-CCCCC---CCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 022605           82 RGDVKGVEDLLNEG-SDVNS---IDLDGRTALHIAACEGHVEVVKLLLSKKA  129 (294)
Q Consensus        82 ~g~~~~v~~Ll~~g-~~~~~---~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga  129 (294)
                      ..+..++++.|++| +++|.   +-.+|.|-|--|..+++.+++.+|+++||
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            45788999999999 78874   34789999999999999999999999998

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=93.53  E-value=0.061  Score=48.96  Aligned_cols=90  Identities=32%  Similarity=0.475  Sum_probs=66.5

Q ss_pred             cccccCcchhhhhcccCCCC-CceeeeeecCchh-hhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCC
Q 022605          181 PEYELNPLELQVRKADGITK-GSYQVAKWNGTKV-WVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI  258 (294)
Q Consensus       181 ~~~l~~~~~~~~~~~~~~~~-t~l~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~  258 (294)
                      ..+.+.+..+.+...-+.|. .-.+...++|+.. .++.+. .+.   .....+.....+..+..|.+||++...|..+.
T Consensus       199 d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik-~~~---m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~  274 (468)
T KOG0197|consen  199 DPWEIPREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIK-EGS---MSPEAFLREAQIMKKLRHEKLVKLYGVCTKQE  274 (468)
T ss_pred             CCeeecHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEe-ccc---cChhHHHHHHHHHHhCcccCeEEEEEEEecCC
Confidence            34455555556666666665 5678889999854 455554 432   23345567788888899999999999999988


Q ss_pred             CeEEEEecCCCCCCCc
Q 022605          259 PMMIVLEYHAKVSMPI  274 (294)
Q Consensus       259 ~l~~~~e~~~~g~l~~  274 (294)
                      +++++|||+.+|+|-.
T Consensus       275 piyIVtE~m~~GsLl~  290 (468)
T KOG0197|consen  275 PIYIVTEYMPKGSLLD  290 (468)
T ss_pred             ceEEEEEecccCcHHH
Confidence            9999999999999863

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.29  E-value=0.13  Score=40.63  Aligned_cols=143  Identities=14%  Similarity=0.025  Sum_probs=93.4

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q 022605           70 LDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYG  149 (294)
Q Consensus        70 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g  149 (294)
                      .+-.-.|..|+..+.+.+++..-+...+-   -...++.+-.||...+.|+|+|+-+.   ..  -.+-.+-+.+|...+
T Consensus        44 c~~~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qn---L~--i~~~~~iFdIA~~~k  115 (192)
T PF03158_consen   44 CDMWCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQN---LH--IYNPEDIFDIAFAKK  115 (192)
T ss_pred             CCHHHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhc---cC--CCCchhhhhhhhhcc
Confidence            34456678888899999998887653211   13467788899999999999999542   22  233345677888887


Q ss_pred             CHHHH----HHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCC
Q 022605          150 NVEVY----NILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKD  225 (294)
Q Consensus       150 ~~~~v----~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~  225 (294)
                      ..++.    ++++++...-            .......++              ..-|..|+..|-...|...++.|+..
T Consensus       116 DlsLyslGY~l~~~~~~~~------------~~~d~~~ll--------------~~hl~~a~~kgll~F~letlkygg~~  169 (192)
T PF03158_consen  116 DLSLYSLGYKLLFNRMMSE------------HNEDPTSLL--------------TQHLEKAAAKGLLPFVLETLKYGGNV  169 (192)
T ss_pred             chhHHHHHHHHHHhhcccc------------cccCHHHHH--------------HHHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            77662    1122221110            000011111              11467888899998888888888755


Q ss_pred             hHhhhhhhhHHHHHHHcCCCchhhhhh
Q 022605          226 PERINAFTHELTIVEKARHPNVVQFVG  252 (294)
Q Consensus       226 ~~~~~~~~t~l~~a~~~~~~~iv~~L~  252 (294)
                      ..      +.+..|++.+|..|+.++.
T Consensus       170 ~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  170 DI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             cH------HHHHHHHHhhHHHHHHHhh
Confidence            33      7899999999999998874

These proteins may be involved in promoting survival of infected macrophages [].

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=93.05  E-value=0.027  Score=52.21  Aligned_cols=81  Identities=27%  Similarity=0.503  Sum_probs=62.3

Q ss_pred             hhhcccCCCC-CceeeeeecC-chhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCC
Q 022605          191 QVRKADGITK-GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHA  268 (294)
Q Consensus       191 ~~~~~~~~~~-t~l~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~  268 (294)
                      .+..+-+.|. +-+|+....| -...||.|.  ..+..+..+++...+-...+..|++||++++.|..+.++-+++||+.
T Consensus       541 ~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr--~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmE  618 (807)
T KOG1094|consen  541 RFKEKIGEGQFGEVHLCEVEGPLKVAVKILR--PDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYME  618 (807)
T ss_pred             ehhhhhcCcccceeEEEEecCceEEEEeecC--cccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHh
Confidence            3445555554 6788887777 555667664  22334445677788888888899999999999999999999999999


Q ss_pred             CCCCC
Q 022605          269 KVSMP  273 (294)
Q Consensus       269 ~g~l~  273 (294)
                      +|+|-
T Consensus       619 nGDLn  623 (807)
T KOG1094|consen  619 NGDLN  623 (807)
T ss_pred             cCcHH
Confidence            99975

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=92.57  E-value=0.089  Score=46.67  Aligned_cols=61  Identities=20%  Similarity=0.438  Sum_probs=47.1

Q ss_pred             hhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          212 KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       212 ~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      ..+||.+.... -.....+.-.+.+.+..+-.|++||.++..+..+..+++|||||..|+|-
T Consensus        37 ~VAIK~i~~~~-l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVMEyC~gGDLs   97 (429)
T KOG0595|consen   37 EVAIKCIAKKK-LNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVMEYCNGGDLS   97 (429)
T ss_pred             eEEeeeehhhc-cCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEEeCCCCCHH
Confidence            34455554332 13344455568888999999999999999999999999999999999975

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=92.31  E-value=0.055  Score=50.19  Aligned_cols=55  Identities=29%  Similarity=0.504  Sum_probs=48.1

Q ss_pred             hhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC--------cccccccccccccc
Q 022605          233 THELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP--------ITPFLTLSFHKQTH  287 (294)
Q Consensus       233 ~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~--------~t~l~~a~~n~~~~  287 (294)
                      .|.+-...+..|++|++|++.|.+.+..-|+||||++|.|+        .||-.++.|.++|.
T Consensus       160 ETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLka~~~itp~llv~Wsk~IA  222 (904)
T KOG4721|consen  160 ETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLKAGRPITPSLLVDWSKGIA  222 (904)
T ss_pred             hhhHHHHHhccCcceeeEeeeecCCceeEEeeeccccccHHHHHhccCccCHHHHHHHHHHhh
Confidence            47777888999999999999999999999999999999986        57778888877764

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.73  E-value=0.4  Score=32.28  Aligned_cols=47  Identities=15%  Similarity=0.203  Sum_probs=34.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhC
Q 022605           74 MQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK  127 (294)
Q Consensus        74 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~  127 (294)
                      .-+..|+..|+.|+++.+++.+ .++      ...+..|+..-+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3477888888888888888654 221      2478888888888888888875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=91.61  E-value=0.18  Score=45.01  Aligned_cols=71  Identities=28%  Similarity=0.383  Sum_probs=52.5

Q ss_pred             CceeeeeecC-chhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCC-eEEEEecCCCCCCCc
Q 022605          201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP-MMIVLEYHAKVSMPI  274 (294)
Q Consensus       201 t~l~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~-l~~~~e~~~~g~l~~  274 (294)
                      ...+.+...+ ..-+||.+-......   ..++.+.+....+..|+++|++++.|..... ..+++||+++|+|..
T Consensus        89 g~VYkG~l~~~~~vAVK~~~~~~~~~---~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL~d  161 (361)
T KOG1187|consen   89 GTVYKGVLSDGTVVAVKRLSSNSGQG---EREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLLVYEYMPNGSLED  161 (361)
T ss_pred             eEEEEEEECCCCEEEEEEecCCCCcc---hhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEEEEEccCCCCHHH
Confidence            3445455444 455666554222221   4458999999999999999999999998884 999999999999854

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.35  E-value=0.32  Score=32.79  Aligned_cols=47  Identities=23%  Similarity=0.256  Sum_probs=40.1

Q ss_pred             cHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Q 022605          107 TALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKAR  160 (294)
Q Consensus       107 TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  160 (294)
                      ..+..|+.+|+.|+++.+++.+ .++      ...+..|+..-+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4689999999999999999865 222      3479999999999999999976

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=89.11  E-value=0.44  Score=44.04  Aligned_cols=44  Identities=23%  Similarity=0.423  Sum_probs=39.6

Q ss_pred             hhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCc
Q 022605          231 AFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPI  274 (294)
Q Consensus       231 ~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~  274 (294)
                      -..+.+.++....|.+||.||.+.....++|++|||+..|+|-+
T Consensus       316 LilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~ggsLTD  359 (550)
T KOG0578|consen  316 LLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEGGSLTD  359 (550)
T ss_pred             hhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCCCchhh
Confidence            45688999999999999999999999999999999999999643

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=87.87  E-value=1.2  Score=35.29  Aligned_cols=110  Identities=15%  Similarity=0.102  Sum_probs=72.5

Q ss_pred             CCCccccccC-CCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHH----HHHHhcCCCCCCCCC--CCCcHHHH
Q 022605           39 RNNMRFSFGR-QSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGV----EDLLNEGSDVNSIDL--DGRTALHI  111 (294)
Q Consensus        39 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v----~~Ll~~g~~~~~~~~--~g~TpLh~  111 (294)
                      ....+|..|+ ..+.+.++|+-..-...     +..+-+-+|....+++..    .+++++...-...|.  -=..-|.+
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~qnL~i~-----~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~  149 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQNLHIY-----NPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEK  149 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhhccCCC-----CchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHH
Confidence            4455666655 55667777773332222     233457778888887753    234454322211111  00135789


Q ss_pred             HHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 022605          112 AACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKA  159 (294)
Q Consensus       112 A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  159 (294)
                      |+..|-+..|...+++|.+++.      ++|..|+..++..++.+++.
T Consensus       150 a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  150 AAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            9999999999999999987764      69999999999999999875

These proteins may be involved in promoting survival of infected macrophages [].

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=85.44  E-value=1.1  Score=40.22  Aligned_cols=68  Identities=22%  Similarity=0.358  Sum_probs=50.4

Q ss_pred             ecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcc
Q 022605          208 WNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPIT  275 (294)
Q Consensus       208 ~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t  275 (294)
                      ..|....|+.+.+..-.+..-.-.-+..+.+....+|++|+...........+.++|||..+|.||+.
T Consensus        76 ~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivMEYaS~GeLYDY  143 (668)
T KOG0611|consen   76 KSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVMEYASGGELYDY  143 (668)
T ss_pred             cCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEEecCCccHHHH
Confidence            45677777766433222222122335778888899999999999999999999999999999999864

>PHA02988 hypothetical protein; Provisional

Probab=84.59  E-value=1.1  Score=38.31  Aligned_cols=74  Identities=15%  Similarity=0.247  Sum_probs=52.2

Q ss_pred             CCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcC----CCCeEEEEecCCCCCCC
Q 022605          200 KGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ----NIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       200 ~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~----~~~l~~~~e~~~~g~l~  273 (294)
                      ...++.+...|..-++|.+-................+....+..|++|++++.....    ...+.+++||+.+|+|.
T Consensus        33 ~~~v~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~  110 (283)
T PHA02988         33 QNSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLR  110 (283)
T ss_pred             ceEEEEEEECCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeCCCCcHH
Confidence            345677788888777777643322222223455677888888999999999976543    34678999999999875

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=84.07  E-value=0.3  Score=47.13  Aligned_cols=60  Identities=30%  Similarity=0.504  Sum_probs=45.8

Q ss_pred             hhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          212 KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       212 ~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      ...+|.|. .| -......++-+...+.-+..|++|+.+-+..+...+.|+++|||.+|+|.
T Consensus       659 ~VAIKTLK-~G-ytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTEyMENGsLD  718 (996)
T KOG0196|consen  659 TVAIKTLK-AG-YTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITEYMENGSLD  718 (996)
T ss_pred             eEEEeeec-cC-ccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhhhhhCCcHH
Confidence            34556663 33 33334455666667777778999999999999999999999999999875

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=84.06  E-value=0.72  Score=42.51  Aligned_cols=49  Identities=33%  Similarity=0.577  Sum_probs=40.9

Q ss_pred             ChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          225 DPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       225 ~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      ......++...--+....+|++||++.+.+....|+++++|++.+|+|-
T Consensus       201 ~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmEl~~gGsL~  249 (474)
T KOG0194|consen  201 TKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVMELCNGGSLD  249 (474)
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEEecCCCcHH
Confidence            3444456666667777889999999999999999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-14
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-14
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-13
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-13
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-13
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-13
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-13
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-13
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-12
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-12
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-12
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		6e-11
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-11
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		8e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-11
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-10
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-10
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-10
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-10
2xen_A	91	Structural Determinants For Improved Thermal Stabil		4e-10
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		5e-10
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		5e-10
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		7e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		9e-10
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-09
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-09
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-09
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-09
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-08
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-08
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		3e-08
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		6e-08
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-07
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-07
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-07
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-07
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-07
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		2e-07
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		3e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-07
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		3e-07
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-07
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		4e-07
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		5e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		8e-07
1ycs_B	239	P53-53bp2 Complex Length = 239		1e-06
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		1e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-06
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-06
1uoh_A	226	Human Gankyrin Length = 226		4e-06
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-06
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		4e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		7e-06
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		8e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		5e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		7e-05
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		2e-04
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		2e-04
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		2e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		3e-04
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		3e-04
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		5e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		6e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 9/155 (5%)
Query: 75  QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           +L+  A  G+   V+DL+  G+DVN+ D DGRT LH AA EGH E+VKLL+SK A+++A+
Sbjct: 7   RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA---NPREVPEYELNP- 187
           D  G T    A   G+ E+  +L ++GA V       RTP+  A     +E+ +  ++  
Sbjct: 67  DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 188 LELQVRKADGITKGSYQVAKWNGTKVWVKILDKES 222
            ++    +DG T     +A+ +G +  VK+L+K+ 
Sbjct: 127 ADVNTSDSDGRT--PLDLAREHGNEEIVKLLEKQG 159

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 9/155 (5%)
Query: 75  QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           +L+  A  G+   V+DL+  G+DVN+ D DGRT LH AA  GH EVVKLL+SK A+++A+
Sbjct: 7   RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA---NPREVPEYELNP- 187
           D  G T    A   G+ EV  +L ++GA V       RTP+  A     +EV +  ++  
Sbjct: 67  DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 188 LELQVRKADGITKGSYQVAKWNGTKVWVKILDKES 222
            ++    +DG T     +A+ +G +  VK+L+K+ 
Sbjct: 127 ADVNTSDSDGRT--PLDLAREHGNEEVVKLLEKQG 159

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 4/103 (3%)
Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A R G ++ V+ LL  G+DVN+ D +GRT LH+AA  GH+EVVKLLL   A+++A+D
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
           + G T    A   G++EV  +L   GA V    K  RTP+ +A
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 11/156 (7%)
Query: 75  QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           +L+  A  G+   V+DLL  G+DVN+ D DG+T LH+AA  GH EVVKLLLS+ A+ +A+
Sbjct: 7   RLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK----RTPMTVA---NPREVPEYELNP 187
           D  G T    A   G+ EV  +L ++GA  P  K    +TP+ +A     +EV +  L+ 
Sbjct: 67  DSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 188 -LELQVRKADGITKGSYQVAKWNGTKVWVKILDKES 222
             +     +DG T     +A+ +G +  VK+L+K+ 
Sbjct: 126 GADPNTSDSDGRT--PLDLAREHGNEEVVKLLEKQG 159

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVA---NPREVPEYE 184
           ++A D  GST    A   G++E+  +L   GA V        TP+ +A      E+ E  
Sbjct: 73  VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK 220
           L      V   D   K ++ ++  NG +   +IL K
Sbjct: 133 LKH-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D    L   A  G  + V+ LL++G+DVN+   DG T LH+AA  GH E+VKLLL+K A+
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           ++AR + G+T    AK  G+ E+  +L A+GA V
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVA---NPREVPEYE 184
           ++A D  GST    A   G++E+  +L   GA V        TP+ +A      E+ E  
Sbjct: 73  VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK 220
           L      V   D   K ++ ++  NG +   +IL K
Sbjct: 133 LKH-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 85/157 (54%), Gaps = 13/157 (8%)
Query: 75  QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           +L+  A  G+   V+DLL  G+D N+ D DGRT LH AA  GH E+VKLLLSK A+ +A+
Sbjct: 7   RLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK----RTPMTVANPREVPEYELNPLEL 190
           D  G T    A   G+ E+  +L ++GA  P  K    RTP+  A   E    E+  L L
Sbjct: 67  DSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYA--AENGHKEIVKL-L 122
Query: 191 QVRKADGITKGS-----YQVAKWNGTKVWVKILDKES 222
             + AD  T  S       +A+ +G +  VK+L+K+ 
Sbjct: 123 LSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D  G+T LH+AA +GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPR---EVPEYE 184
           ++A D+ G T    A  YG++E+  +L   GA V  T     TP+ +A      E+ E  
Sbjct: 73  VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK 220
           L      V   D   K ++ ++  NG +   +IL K
Sbjct: 133 L-KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 56/103 (54%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+D N+ D  GRT LH+AA  GH+E+V++LL   A+
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 173
           ++A D  G+T    A   G++E+  +L   GA V     T +T
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGIT 103

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 4/103 (3%)
Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A R G ++ VE LL  G+DVN+ D DG T LH+AA EGH+E+V++LL   A+++A+D
Sbjct: 39  LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
           + G T    A   G++E+  +L   GA V    K  +TP  +A
Sbjct: 99  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 7/158 (4%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D DG T LH+AA EGH+E+V++LL   A+
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA---NPREVPEYE 184
           ++A+D+ G T    A   G++E+  +L   GA V    K   TP+ +A      E+ E  
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKES 222
           L      V   D   K  + +A  NG +   ++L K +
Sbjct: 121 LKA-GADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 55/94 (58%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D    L   A  G ++ VE LL  G+DVN+ DL G T LH+AA  GH+E+V++LL   A+
Sbjct: 46  DGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD 105
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           ++A D  G T    A  YG++E+  +L   GA V
Sbjct: 106 VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 56/99 (56%)
Query: 75  QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           +LL  A  G    V  L+  G+DVN+ D  G T LH+AA  GH+E+V++LL   A++DA 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 173
           D +G T    A Y+G++E+  +L   GA V       MT
Sbjct: 77  DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMT 115

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A R G ++ V+ LL  G+DVN+ D +GRT LH+AA  GH+EVVKLLL   A+++A+D
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGA 162
           + G T    A   G++EV  +L   GA
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D+ G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVANPR---EVPEYE 184
           ++A D  GST    A ++G++E+  +L   GA V        TP+ +A  R   E+ E  
Sbjct: 73  VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK 220
           L      V   D   K ++ ++  NG +   +IL K
Sbjct: 133 L-KYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 7/154 (4%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D DG T LH+AA EGH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA---NPREVPEYE 184
           ++A+D+ G T    A   G++E+  +L   GA V    K   TP+ +A      E+ E  
Sbjct: 73  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKIL 218
           L      V   D   K ++ ++  NG +   +IL
Sbjct: 133 LKA-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVANPR---EVPEYE 184
           ++A D  GST    A   G++E+  +L   GA V        TP+ +A      E+ E  
Sbjct: 73  VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKIL 218
           L      V   D   K ++ ++  NG +   +IL
Sbjct: 133 L-KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 75  QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           +LL  A  G    V  L+  G+DVN++D  G T LH+AA  GH+E+V++LL   A++DA 
Sbjct: 17  KLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVANPR---EVPEYELNPL 188
           D +G T    A   G++E+  +L   GA V     T  TP+ +A      E+ E  L   
Sbjct: 77  DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL-KY 135
Query: 189 ELQVRKADGITKGSYQVAKWNGTKVWVK 216
              V   D   K ++ ++  NG +   K
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAK 163

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L   A RG ++ VE LL  G+DVN+ D+ GRT LH+AA  GH+E+V++LL   A+++A+D
Sbjct: 51  LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
           ++G TA   +   GN ++  IL+
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D +G T LH+AA  G +E+V++LL   A+
Sbjct: 5   DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVA 175
           ++A D  G T    A Y G++E+  +L   GA V    R   TP+ +A
Sbjct: 65  VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLA 112

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPR---EVPEYE 184
           ++A+D  G T    A   G++E+  +L   GA V  +     TP+ +A  R   E+ E  
Sbjct: 73  VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK 220
           L      V   D   K ++ ++  NG +   +IL K
Sbjct: 133 LKN-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L   A RG ++ VE LL  G+DVN+ D+ GRT LH+AA  GH+E+V++LL   A+++A+D
Sbjct: 51  LHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
           ++G TA   +   GN ++  IL+
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D  G T LH+    GH+E++++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK---RTPMTVA---NPREVPEYE 184
           ++A D+ G T    A Y G++E+  +L   GA V        TP+ +A      E+ E  
Sbjct: 73  VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK 220
           L      V   D   K ++ ++  NG +   +IL K
Sbjct: 133 L-KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Query: 91  LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
           L+  G+DVN+ D  G T LH+AA  GH+E+V++LL   A+++A D  G T    A  +G+
Sbjct: 33  LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92
Query: 151 VEVYNILKARGAKVPKTK---RTPMTVA---NPREVPEYELNPLELQVRKADGITKGSYQ 204
           +E+  +L   GA V        TP+ +A      E+ E  L      V   D   K ++ 
Sbjct: 93  LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFD 151
Query: 205 VAKWNGTKVWVKILDK 220
           ++  NG +   +IL K
Sbjct: 152 ISIDNGNEDLAEILQK 167

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L   A RG ++ VE LL  G+DVN+ D  GRT LH+AA  GH+E+V++LL   A+++A+D
Sbjct: 51  LHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
           ++G TA   +   GN ++  IL+
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D  G T LH+AA  GH E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPR---EVPEYE 184
           ++ARD  G T    A   G++E+  +L   GA V        TP+ +A  R   E+ E  
Sbjct: 73  VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK 220
           L      V   D   K ++ ++  NG +   +IL K
Sbjct: 133 LKH-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 55/88 (62%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D DG T LH+AA EGH+E+V++LL   A+
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
           ++A+D++G TA   +   GN ++  IL+
Sbjct: 61  VNAQDKFGKTAFDISIDNGNEDLAEILQ 88

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 17/117 (14%)
Query: 179 EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKIL-DKESHKDPERINAFTHELT 237
           ++P  +LN  E    K    + G+   A+W+G+ V VKIL +++ H   ER+N F  E+ 
Sbjct: 33  DIPWCDLNIKE----KIGAGSFGTVHRAEWHGSDVAVKILMEQDFHA--ERVNEFLREVA 86
Query: 238 IVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTSGGKHK 294
           I+++ RHPN+V F+GAVTQ   + IV EY ++ S+          ++  H SG + +
Sbjct: 87  IMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSL----------YRLLHKSGAREQ 133

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 17/117 (14%)
Query: 179 EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKIL-DKESHKDPERINAFTHELT 237
           ++P  +LN  E    K    + G+   A+W+G+ V VKIL +++ H   ER+N F  E+ 
Sbjct: 33  DIPWCDLNIKE----KIGAGSFGTVHRAEWHGSDVAVKILMEQDFHA--ERVNEFLREVA 86
Query: 238 IVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTSGGKHK 294
           I+++ RHPN+V F+GAVTQ   + IV EY ++ S+          ++  H SG + +
Sbjct: 87  IMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSL----------YRLLHKSGAREQ 133

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 55/94 (58%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN++D DG T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           ++A D +G T    A   G++E+  +L   GA V
Sbjct: 73  VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV 106

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 11/158 (6%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYE--LNPL 188
           ++A D +G+T    A   G++E+  +L   GA V        T   P  +  Y+  L  +
Sbjct: 73  VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFT---PLHLAAYDGHLEIV 129
Query: 189 EL------QVRKADGITKGSYQVAKWNGTKVWVKILDK 220
           E+       V   D   K ++ ++  NG +   +IL K
Sbjct: 130 EVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPREVPEYELNP 187
           ++A D  G T    A   G++EV  +L   GA V        TP+ +A    +   E+  
Sbjct: 73  VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLA--ANIGHLEIVE 130
Query: 188 LELQ----VRKADGITKGSYQVAKWNGTKVWVKILDK 220
           + L+    V   D   K ++ ++  NG +   +IL K
Sbjct: 131 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D  G T LH+AA   H+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 173
           ++A D  GST    A  +G++E+  +L   GA V    +   T
Sbjct: 73  VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKT 115

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 51/94 (54%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D  G T LH+AA   H+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           ++A D  G T       YG++E+  +L   GA V
Sbjct: 73  VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADV 106

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DVN+ D  G T L++A   GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           ++A D  G T    A + G++E+  +L   GA V
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DV + D +G T LH+AA  GH+EVVKLLL   A+
Sbjct: 5   DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
           ++A+D++G TA   +   GN ++  IL+
Sbjct: 65  VNAQDKFGKTAFDISIDNGNEDLAEILQ 92

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L   A +  V+    LL  G   N+  + G T LH+AA EGH E+V LLLSK+AN +  +
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVAN 176
           + G T        G+V V ++L   G  V  T R   TP+ VA+
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 319

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 6/157 (3%)
Query: 83  GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA 142
           G +  V++LL  G+  N  ++   T LH+AA  GH EV K LL  KA ++A+ +   T  
Sbjct: 25  GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL 84
Query: 143 ADAKYYGNVEVYNILKARGAK---VPKTKRTPMTVANPREVPEYELNPLELQVRKADGIT 199
             A   G+  +  +L    A          TP+ +A      E  L  LE +  +A    
Sbjct: 85  HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK 144
Query: 200 KGS---YQVAKWNGTKVWVKILDKESHKDPERINAFT 233
           KG    +  AK+   +V   +L++++H +    N  T
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT 181

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 50/94 (53%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L   G+DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           ++A    G T    A +  ++E+  +L   GA V
Sbjct: 73  VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D   +LL  A  G    V  L+  G+DV + D +G T LH+AA  GH+EVVKLLL   A+
Sbjct: 23  DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
           + A+D++G TA   +   GN ++  IL+
Sbjct: 83  VXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%)
Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L   + +GD+  VE LL  GSD N  D  G T LH A   GH++VV+LLL  KA ++   
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGA 162
               +   DA   G+V++  +L + GA
Sbjct: 74  YQNDSPLHDAAKNGHVDIVKLLLSYGA 100

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
Query: 38  RRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSD 97
           R   ++   G ++ L+P    PV          D     L     GD + V  LL  G+D
Sbjct: 10  RNEQLKRWIGSETDLEP----PVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD 65
Query: 98  VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNIL 157
           +N  ++DG TALH A  + +V++VK L+   ANI+  D  G      A   G +++   L
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125
Query: 158 KARGAKVPKTKR---TPMTV 174
            ++GA V        TP+ +
Sbjct: 126 ISQGAHVGAVNSEGDTPLDI 145

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 69  NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGR--TALHIAACEGHVEVVKLLLS 126
           N ++  QLL  A  GDV+ V+ L    S VN  D++GR  T LH AA    V VV+ LL 
Sbjct: 7   NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY 183
             A++ A+D+ G     +A  YG+ EV  +L   GA V      K TP+  A  +   +Y
Sbjct: 66  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK--GKY 123
Query: 184 ELNPLELQ 191
           E+  L LQ
Sbjct: 124 EICKLLLQ 131

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 69  NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGR--TALHIAACEGHVEVVKLLLS 126
           N ++  QLL  A  GDV+ V+ L    S VN  D++GR  T LH AA    V VV+ LL 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY 183
             A++ A+D+ G     +A  YG+ EV  +L   GA V      K TP+  A  +   +Y
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK--GKY 121
Query: 184 ELNPLELQ 191
           E+  L LQ
Sbjct: 122 EICKLLLQ 129

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 69  NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGR--TALHIAACEGHVEVVKLLLS 126
           N ++  QLL  A  GDV+ V+ L    S VN  D++GR  T LH AA    V VV+ LL 
Sbjct: 9   NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY 183
             A++ A+D+ G     +A  YG+ EV  +L   GA V      K TP+  A  +   +Y
Sbjct: 68  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK--GKY 125
Query: 184 ELNPLELQ 191
           E+  L LQ
Sbjct: 126 EICKLLLQ 133

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 83  GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGSTA 141
           G +  ++ LL   +DVN  D +G   LH+AA EGH+ VV+ L+   A N+  R+  G TA
Sbjct: 81  GQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 142 AADAKYYGNVEVYNILKARGA 162
              A+ YG  EV ++++A GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 83  GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGSTA 141
           G +  ++ LL   +DVN  D +G   LH+AA EGH+ VV+ L+   A N+  R+  G TA
Sbjct: 81  GFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 142 AADAKYYGNVEVYNILKARGA 162
              A+ YG  EV ++++A GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 83  GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA 142
           GD+  V+D + +G DVN     GR  LH AA  G +E+++ LL K A+I+A D+   T  
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 143 ADAKYYGNVEVYNILKARGAKVPKTKRTP 171
             A Y G+V    +L ++GA   KT + P
Sbjct: 78  LSAVYEGHVSCVKLLLSKGAD--KTVKGP 104

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 83  GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA 142
           GD+  V+D + +G DVN     GR  LH AA  G +E+++ LL K A+I+A D+   T  
Sbjct: 13  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 143 ADAKYYGNVEVYNILKARGAKVPKTKRTP 171
             A Y G+V    +L ++GA   KT + P
Sbjct: 73  LSAVYEGHVSCVKLLLSKGAD--KTVKGP 99

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 85  VKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD 144
           V+ V+ LL  G+DV++ D  G   LH A   GH EV +LLL   A ++A D W  T   +
Sbjct: 71  VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHE 130
Query: 145 AKYYGNVEVYNILKARGA 162
           A     VEV ++L + GA
Sbjct: 131 AASKNRVEVCSLLLSHGA 148

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 83  GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGSTA 141
           G +  ++ LL   +DVN  D +G   LH+AA EGH+ VV+ L+   A N+  R+  G TA
Sbjct: 81  GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 142 AADAKYYGNVEVYNILKARGA 162
              A+ YG  EV ++++A GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 83  GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGSTA 141
           G +  ++ LL   +DVN  D +G   LH+AA EGH+ VV+ L+   A N+  R+  G TA
Sbjct: 81  GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 142 AADAKYYGNVEVYNILKARGA 162
              A+ YG  EV ++++A GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 83  GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGSTA 141
           G +  ++ LL   +DVN  D +G   LH+AA EGH+ VV+ L+   A N+  R+  G TA
Sbjct: 81  GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 142 AADAKYYGNVEVYNILKARGA 162
              A+ YG  EV ++++A GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 77  LFMACRGDVKGV-EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A + +  G+ E LL++GS+VN+ D  G+T L  +   G+ E+   LL   AN++ R+
Sbjct: 72  LIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRN 131
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTV-ANPREVPEYELNPLELQVRK 194
             G T    A  YG  E+   L   GA +     T +T  A+ R     E+  +  +VR+
Sbjct: 132 LEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Query: 195 A 195
           A
Sbjct: 192 A 192

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 2/169 (1%)
Query: 44  FSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACR-GDVKGVEDLLNEGSDVNSID 102
           F+  R+ +   +R      E  + +  D     L  ACR G    VE L+  G+ +N ++
Sbjct: 10  FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 69
Query: 103 LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA 162
               T LH+AA  GH ++V+ LL  KA+I+A +  G+     A ++G  +V   L A GA
Sbjct: 70  RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Query: 163 KVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGT 211
            V    +      +  + P  EL   E   +    + +  Y+   W GT
Sbjct: 130 LVSICNKYGEMPVDKAKAPLREL-LRERAEKMGQNLNRIPYKDTFWKGT 177

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 48/100 (48%)
Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           LL  +  G+   V+ ++ E  D +  + +G TALH A C GH E+VK L+    N++A D
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVA 175
             G T    A    NV+V   L   GA V     + M  A
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 48/100 (48%)
Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           LL  +  G+   V+ ++ E  D +  + +G TALH A C GH E+VK L+    N++A D
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVA 175
             G T    A    NV+V   L   GA V     + M  A
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
           VE LL  G+D      +G T   +AA  G V+++KL LSK A+++  D +G TA  +A  
Sbjct: 75  VELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 134
Query: 148 YGNVEVYNILKARGAKVPKTKRT 170
           YG V+    L  RGA V   ++T
Sbjct: 135 YGKVKALKFLYKRGANVNLRRKT 157

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
           VE LL  G+D      +G T   +AA  G V+++KL LSK A+++  D +G TA  +A  
Sbjct: 55  VELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114
Query: 148 YGNVEVYNILKARGAKVPKTKRT 170
           YG V+    L  RGA V   ++T
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKT 137

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 44  FSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACR-GDVKGVEDLLNEGSDVNSID 102
           F+  R+ +   +R      E  + +  D     L  ACR G    VE L+  G+ +N ++
Sbjct: 5   FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 64
Query: 103 LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA 162
               T LH+AA  GH ++V+ LL  KA+I+A +  G+     A ++G  +V   L A GA
Sbjct: 65  RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Query: 163 KVPKTKRTPMTVANPREVPEYEL 185
            V    +      +  + P  EL
Sbjct: 125 LVSICNKYGEMPVDKAKAPLREL 147

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 68  ENLDSTMQLLFMACRGDVKGV-EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLS 126
           E   S + +  +A  G ++ + E +L + S     D D RTALH A   GH E+V+ LL 
Sbjct: 2   EGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPREVPEY 183
               ++ +D  G +    A   G  E+   L  +GA+V    +   TP+  A  +   E 
Sbjct: 62  LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 121
Query: 184 ELNPLE 189
            +  LE
Sbjct: 122 AVMLLE 127

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 68  ENLDSTMQLLFMACRGDVKGV-EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLS 126
           E   S + +  +A  G ++ + E +L + S     D D RTALH A   GH E+V+ LL 
Sbjct: 3   EGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 62
Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPREVPEY 183
               ++ +D  G +    A   G  E+   L  +GA+V    +   TP+  A  +   E 
Sbjct: 63  LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 122
Query: 184 ELNPLE 189
            +  LE
Sbjct: 123 AVMLLE 128

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 77  LFMACRGDVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A R  ++G VEDL+   +D+N+ D  G+TALH AA   + E V +LL   AN DA+D
Sbjct: 122 LILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD 181
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR 178
               T    A   G+ E    L    A    T    R P  VA+ R
Sbjct: 182 DKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASER 227

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +AC+ G  + V+ LL+  +  N  DL G T L  A   GH E+V LLL   A+I+A +
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVA 175
             G+TA  +A    +V V  +L   GA V    K +RT +  A
Sbjct: 183 NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
           V+ LL +G+ VN+++ +G T LH AA +   E+  +LL   AN DA+D + +TA   A  
Sbjct: 89  VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 148 YGNVEVYNIL---KARGAKVPKTKRTPMTVANPRE 179
            GN+++ +IL   KA          TP+ +A   E
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L   A  G  + V+ LL +G+ VN+++ +G T LH AA +   E+  +LL   AN DA+D
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 136 RWGSTAAADAKYYGNVEVYNIL---KARGAKVPKTKRTPMTVANPRE 179
            + +TA   A   GN+++ +IL   KA          TP+ +A   E
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 85  VKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDARDRWGSTAAA 143
           ++ V+ L+  G+ V+  D +G T LH+AA +GH EVV+ LLS  + +++ +D  G T   
Sbjct: 57  LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 144 DAKYYGNVEVYNILKARGAKV 164
            A  Y +V++  +L ++G+ +
Sbjct: 117 WATEYKHVDLVKLLLSKGSDI 137

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L   A  G    VE LL  G+DVN+ D+   TALH A    H EVV+LL+   A++  + 
Sbjct: 71  LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
           ++  TA   +   GN ++  IL+
Sbjct: 131 KFCKTAFDISIDNGNEDLAEILQ 153

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L++ +  G+++ V  LL  G+D + +  +  +AL +A+  G+ ++V LLL +  +I+  D
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
             G T    A +  +V+    L ARGA +     +  TPM +A
Sbjct: 100 WNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLA 142

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D+   L+       +   E LL  G++VN  D  GR  LH A   GH  +  L L + A+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
           + ARD  G      A    N ++  +L+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLR 321

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D+   L+       +   E LL  G++VN  D  GR  LH A   GH  +  L L + A+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
           + ARD  G      A    N ++  +L+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLR 321

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           D+   L+       +   E LL  G++VN  D  GR  LH A   GH  +  L L + A+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
           + ARD  G      A    N ++  +L+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLR 321

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L++ +  G+++ V  LL  G+D + +  +  +AL +A+  G+ ++V LLL +  +I+  D
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
             G T    A    +V+    L ARGA +     +  TPM +A
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 105 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKA 159
           G+TAL +A   G V+VVK LL+ +A+++ +D  GSTA   A  +G+ E+  +L A
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA 237

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDARDRWG 138
           A RG++  + + L+    VN +D  G TAL+ A   GH ++V+ L ++    ++ +++ G
Sbjct: 81  AKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLG 140
Query: 139 STAAADAKYYGNVEVYNILKARGAKV 164
            TA   A + G  ++  +L A+GA+ 
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGART 166

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 182 EYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEK 241
           E E + + L  R   G + G+    KW+G  V VKIL K     PE+  AF +E+ ++ K
Sbjct: 32  EIEASEVMLSTRIGSG-SFGTVYKGKWHG-DVAVKIL-KVVDPTPEQFQAFRNEVAVLRK 88
Query: 242 ARHPNVVQFVGAVTQN 257
            RH N++ F+G +T++
Sbjct: 89  TRHVNILLFMGYMTKD 104

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 55  IRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAAC 114
           I +  + D+L    +L+ST  L +   +G +  V  L+  G+D + ID +G + +H+AA 
Sbjct: 62  ISKGAIVDQL--GGDLNST-PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Query: 115 EGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
            GH  +V  L++K  ++D  D+ G T    A Y
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-27
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-23
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-20
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-26
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-26
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-26
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-21
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-24
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-24
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-23
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-23
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-23
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-23
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-23
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-22
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-22
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-22
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-06
2rfa_A	232	Transient receptor potential cation channel subfa	2e-19
2rfa_A	232	Transient receptor potential cation channel subfa	7e-17
2rfa_A	232	Transient receptor potential cation channel subfa	8e-17
2rfa_A	232	Transient receptor potential cation channel subfa	4e-16
2rfa_A	232	Transient receptor potential cation channel subfa	3e-13
2rfa_A	232	Transient receptor potential cation channel subfa	1e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-14
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	6e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	1e-15
2pnn_A	273	Transient receptor potential cation channel subfa	7e-13
2pnn_A	273	Transient receptor potential cation channel subfa	2e-11
2pnn_A	273	Transient receptor potential cation channel subfa	5e-11
2pnn_A	273	Transient receptor potential cation channel subfa	4e-08
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-15
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-15
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-15
2etb_A	256	Transient receptor potential cation channel subfam	4e-15
2etb_A	256	Transient receptor potential cation channel subfam	1e-14
2etb_A	256	Transient receptor potential cation channel subfam	5e-14
2etb_A	256	Transient receptor potential cation channel subfam	9e-12
2etb_A	256	Transient receptor potential cation channel subfam	8e-05
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	8e-15
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	1e-14
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-14
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-06
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	5e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-09
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-12
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	6e-12
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	7e-12
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	8e-12
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	3e-11
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	4e-11
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	4e-11
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	5e-11
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	5e-11
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	5e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-10
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	8e-11
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	1e-10
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	1e-10
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-10
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-10
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	2e-10
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-10
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	4e-10
3q4u_A	301	Activin receptor type-1; structural genomics conso	5e-10
3soc_A	322	Activin receptor type-2A; structural genomics cons	6e-10
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	6e-10
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	7e-10
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	7e-10
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	7e-10
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	9e-10
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	9e-10
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	9e-10
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	9e-10
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	9e-10
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	1e-09
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	1e-09
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-09
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-09
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-09
4aoj_A	329	High affinity nerve growth factor receptor; transf	5e-09
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	7e-09
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	7e-09
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	8e-09
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-08
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-08
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-08
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	3e-08
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	3e-08
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	4e-08
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	5e-08
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	7e-08
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	1e-07
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-07
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	1e-07
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-07
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	3e-07
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-07
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	3e-07
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	5e-07
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	9e-07
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-06
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	2e-06
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	3e-06
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	5e-06
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	7e-06
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	3e-05
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-05
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	9e-05
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	9e-05
3uo9_A	534	Glutaminase kidney isoform, mitochondrial; hydrola	1e-04
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	1e-04
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	2e-04
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-04
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-04
3aln_A	327	Dual specificity mitogen-activated protein kinase;	3e-04
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	3e-04
2dyl_A	318	Dual specificity mitogen-activated protein kinase	3e-04
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	4e-04
3fme_A	290	Dual specificity mitogen-activated protein kinase;	4e-04
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	4e-04
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	4e-04
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	5e-04
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	5e-04
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	6e-04
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	6e-04
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	6e-04
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	7e-04
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	8e-04

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (258), Expect = 2e-27
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A   GD+  VE LL  GSD N  D  G T LH A   GH++VV+LLL  KA ++   
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
               +   DA   G+V++  +L + GA           P+   
Sbjct: 74  YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 94.0 bits (235), Expect = 3e-24
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  AC  G +K VE LL   + VN+      + LH AA  GHV++VKLLLS  A+ +A +
Sbjct: 47  LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGA 162
            +G              +  + +   +
Sbjct: 107 IFGLRPVDYTDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 83.2 bits (207), Expect = 4e-20
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 95  GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 154
           G D  + +  G T LHIA+ +G +  V+ LL   ++ + +D  G T   +A  +G+++V 
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 155 NILKARGAKV 164
            +L    A V
Sbjct: 60  ELLLQHKALV 69

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 61.7 bits (151), Expect = 4e-12
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           L  A + G V  V+ LL+ G+  N++++ G   +     E    ++ L    +++
Sbjct: 80  LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  101 bits (255), Expect = 3e-27
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
              A + GD+  V+D + +G DVN     GR  LH AA  G +E+++ LL K A+I+A D
Sbjct: 11  FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVANPREVPE 182
           +   T    A Y G+V    +L ++GA    K     T     + + +  
Sbjct: 71  KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 88.6 bits (221), Expect = 3e-22
 Identities = 25/66 (37%), Positives = 33/66 (50%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
           +E LL +G+D+N+ D    T L  A  EGHV  VKLLLSK A+   +   G TA      
Sbjct: 56  LEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115

Query: 148 YGNVEV 153
                +
Sbjct: 116 QAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 77.1 bits (191), Expect = 6e-18
 Identities = 12/61 (19%), Positives = 23/61 (37%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 163
                   A   G ++ VK  ++K  +++     G      A   G +E+   L  +GA 
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 164 V 164
           +
Sbjct: 66  I 66

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 52.8 bits (128), Expect = 4e-09
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVK 122
           LL     G V  V+ LL++G+D      DG TA      +    +++
Sbjct: 77  LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  102 bits (256), Expect = 5e-27
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 77  LFMACRGDVKGVEDLLNEGSDVNSIDLDGRT-ALHIAACEGHVEVVKLLLSKKANIDARD 135
           + +   G  +  E LL  G++ N  D    T  +H AA EG ++ + +L    A +D RD
Sbjct: 49  IQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 108

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVA---NPREVPE 182
            WG      A+  G+ +V   L+A              +     P ++P+
Sbjct: 109 AWGRLPVDLAEELGHRDVARYLRAAAGGT--RGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 92.2 bits (230), Expect = 4e-23
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A   G V+ V  LL  G++ N+ +  GR  + +    G   V +LLL   A  +  D
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD 74

Query: 136 RWGSTAAA-DAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
               T    DA   G ++   +L   GA++  +    R P+ +A
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 78.7 bits (195), Expect = 3e-18
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 92  LNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYY 148
           +   +  +         L  AA  G VE V+ LL   AN +A + +G             
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM----M 54

Query: 149 GNVEVYNILKARGAKV 164
           G+  V  +L   GA+ 
Sbjct: 55  GSARVAELLLLHGAEP 70

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  102 bits (257), Expect = 3e-26
 Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDL-DGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           LLF+A  G  K V  L   G+D++  D+  G TALH+AA     EVV+ L+   A+I+  
Sbjct: 81  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 140

Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRK 194
           D  G TA   A+              G ++   K   +      E  E      E+  ++
Sbjct: 141 DERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAE----VDEIVEKR 196

Query: 195 ADGITKGSYQVAKWNGTK--VWVKIL 218
             G         +W       WVK +
Sbjct: 197 GKGKDVEYL--VRWKDGGDCEWVKGV 220

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 95.0 bits (237), Expect = 2e-23
 Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 14/173 (8%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
            + A R  D + +  LL E  DV+++D +GRTAL   A  G  + V+LL    A++D RD
Sbjct: 49  WWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 107

Query: 136 -RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA---NPREVPEYELNPL 188
            R G TA   A  Y   EV   L   GA +  + +   T + +A              P+
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGN---PM 164

Query: 189 ELQVRKADGITKGSYQVAKWNGTKVWVKILDKESH-KDPERINAFTHELTIVE 240
           +   R          +   +   +V  +I++K    KD E +  +        
Sbjct: 165 QFGRRIGLEKVINVLEGQVFEYAEV-DEIVEKRGKGKDVEYLVRWKDGGDCEW 216

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 85.7 bits (213), Expect = 6e-20
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           +  M+ L     G            +DV S   +  T    AA +   + +  LL +  +
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL-EDRD 69

Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV----PKTKRTPMTVA 175
           +DA D  G TA       G+ +   +L   GA +     +   T + +A
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 51.1 bits (123), Expect = 9e-08
 Identities = 5/43 (11%), Positives = 14/43 (32%)

Query: 93  NEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
            E  ++      G+   ++   +   +   +     A   A+D
Sbjct: 187 AEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD 229

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 7/89 (7%), Positives = 23/89 (25%), Gaps = 12/89 (13%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A          + +  G  +    +     +       + EV +++  +        
Sbjct: 148 LELAREILKTTPKGNPMQFGRRIGLEKV---INVLEGQVFEYAEVDEIVEKRG------- 197

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
             G       ++    +   +     A+ 
Sbjct: 198 -KGKDVEYLVRWKDGGDCEWVKGVHVAED 225

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 99.4 bits (249), Expect = 4e-26
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 77  LFMACRGDVKGVEDLLNEGSDVNSIDLDGRT-ALHIAACEGHVEVVKLLLSKKANIDARD 135
           + +   G  +  E LL  G++ N  D    T  +H AA EG ++ + +L    A +D  D
Sbjct: 49  IQVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD 108

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGA 162
            WG      A+  G+ ++   L A   
Sbjct: 109 AWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 92.5 bits (231), Expect = 1e-23
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 6/104 (5%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A   G V+ V  LL  G+D N+++  GR  + +    G  +V +LLL   A  +  D
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCAD 74

Query: 136 RWGSTAA-ADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
               T    DA   G ++   +L   GA++       R P+ +A
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 87.9 bits (219), Expect = 8e-22
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 95  GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYYGNV 151
              ++ +       L  AA  G VE V+ LL   A+ +A +R+G             G+ 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM----MGSA 57

Query: 152 EVYNILKARGAKV 164
           +V  +L   GA+ 
Sbjct: 58  QVAELLLLHGAEP 70

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 70.2 bits (173), Expect = 3e-15
 Identities = 12/62 (19%), Positives = 26/62 (41%)

Query: 69  NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK 128
               T  +   A  G +  +  L   G+ ++  D  GR  + +A  +GH ++ + L +  
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134

Query: 129 AN 130
            +
Sbjct: 135 GD 136

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 99.8 bits (250), Expect = 5e-26
 Identities = 21/89 (23%), Positives = 41/89 (46%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           +  +A +G++  +   + + + +N  D +G T L  AA  G + VV+ LL   A+     
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
           +   +A + A   G  ++  +L   G  V
Sbjct: 67  KGRESALSLACSKGYTDIVKMLLDCGVDV 95

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 99.8 bits (250), Expect = 6e-26
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 77  LFMACRG---DVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 133
           L +AC     D+  V+ LL+ G DVN  D +G T L  A    HV+ VK+LL   A+   
Sbjct: 73  LSLACSKGYTDI--VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130

Query: 134 RDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
               G  +   A   G   V  ++++   K+
Sbjct: 131 ETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 95.5 bits (239), Expect = 2e-24
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A   G +  VE LL  G+D   +     +AL +A  +G+ ++VK+LL    +++  D
Sbjct: 40  LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
             G T    A +  +V+   +L   GA    +T      M +A
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 80.1 bits (199), Expect = 1e-18
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A     VK V+ LL  G+D       G  ++ +A   G+  V +++ S    +    
Sbjct: 106 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165

Query: 136 R 136
           +
Sbjct: 166 K 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 77.8 bits (193), Expect = 8e-18
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 163
               ++H  A +G +  +   + ++  I+  D  G T    A  +G + V   L   GA 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 164 V-PKTK--RTPMTVA 175
                K   + +++A
Sbjct: 62  PQLLGKGRESALSLA 76

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  102 bits (257), Expect = 9e-26
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 14/144 (9%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
            L     GD + V  LL  G+D+N  ++DG TALH A  + +V++VK L+   ANI+  D
Sbjct: 44  FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103

Query: 136 RWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA---NPREVPEYELN 186
             G      AA     G +++   L ++GA V        TP+ +A      E+ + E+N
Sbjct: 104 NEGWIPLHAAA---SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 187 PLELQVRKAD--GITKGSYQVAKW 208
              + +  A             +W
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQW 184

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 91.4 bits (228), Expect = 1e-21
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AAD 144
            + L +   +       G TALH+AA +G+ EV+KLL+  + +++ +D  G T    AA 
Sbjct: 182 RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA- 240

Query: 145 AKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
             ++G  E   IL      +    K  +T   VA
Sbjct: 241 --HWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 89.9 bits (224), Expect = 5e-21
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 139
           A +G  + ++ L+    DVN  D DG T LH AA  G  E  ++L+    +++A ++ G 
Sbjct: 207 AAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266

Query: 140 TAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 173
           TA   A       +  + K +       KR   +
Sbjct: 267 TAFDVADEDILGYLEELQKKQNLLH-SEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
           +E  + +         DG      A   G  E V  LL + A+I+  +  G TA   A  
Sbjct: 24  LEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACI 82

Query: 148 YGNVEVYNILKARGAKV 164
             NV++   L   GA +
Sbjct: 83  DDNVDMVKFLVENGANI 99

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 67.9 bits (167), Expect = 3e-13
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 12/80 (15%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AAD 144
           +++ +N         +D   A          +  + L S   N     + G TA   AA 
Sbjct: 155 LQNEVNRQ------GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA- 207

Query: 145 AKYYGNVEVYNILKARGAKV 164
               G  EV  +L      V
Sbjct: 208 --AKGYTEVLKLLIQARYDV 225

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 98  VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA--AADAKYYGNVEVYN 155
           +   D   +    +    G    ++  + K+     +   G+    A      G+ E   
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAAC---SSGDTEEVL 57

Query: 156 ILKARGAKV 164
            L  RGA +
Sbjct: 58  RLLERGADI 66

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  102 bits (256), Expect = 1e-25
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           +  A   G    + +L+++G  VN I  D  + LH A   GH+  VK+LL   A ++   
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTK--RTPMTVA 175
               T   +A   G+ +  N+L   GA V       +P+  A
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEA 164

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 92.9 bits (232), Expect = 2e-22
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L++AC       V+ LL  G+DVN       + LH        E+  LL+   A+  A++
Sbjct: 194 LYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKN 252

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTK 168
             G            +     L+  GA +PK K
Sbjct: 253 AEGKRPVELVPPESPLAQL-FLEREGASLPKPK 284

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 92.2 bits (230), Expect = 4e-22
 Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 10/105 (9%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           LF AC  G    V  LL  G+ V   + D  + +H AA  GHVE V  L++   NID + 
Sbjct: 129 LFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI 187

Query: 136 RWGSTA---AADAKYYGNVEVYNILKARGAKVPKTK--RTPMTVA 175
               T    A              L   GA V + K   +P+   
Sbjct: 188 SHLGTPLYLAC---ENQQRACVKKLLESGADVNQGKGQDSPLHAV 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 88.7 bits (221), Expect = 9e-21
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 77  LFMAC-RGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           +  A  RG V+ V  L+  G +++       T L++A        VK LL   A+++   
Sbjct: 161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-G 219

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
           +   +         + E+  +L   GA  
Sbjct: 220 KGQDSPLHAVVRTASEELACLLMDFGADT 248

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 81.4 bits (202), Expect = 3e-18
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 32/118 (27%)

Query: 79  MACR-GDVKGVEDLLNEGSDVNSIDL-------------------------------DGR 106
           M            L+  GS + S+D                                   
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 107 TALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           + +H AA  GH   ++ L+S+   ++       +   +A   G++    IL   GA+V
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.3 bits (124), Expect = 9e-08
 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 111 IAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK-- 168
           + +   H      L+ + +++ + D         +K  G  +   I       +      
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDG-SKPAGPRDFPGIRLLSNPLMGDAVSD 59

Query: 169 RTPMTVA 175
            +PM  A
Sbjct: 60  WSPMHEA 66

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.0 bits (248), Expect = 1e-25
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A   G+++ V  LL  G+D + +  +  +AL +A+  G+ ++V LLL +  +I+  D
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
             G T    A    +V+    L ARGA +  +     TPM +A
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 98.6 bits (247), Expect = 2e-25
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 77  LFMACRG---DVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 133
           L +A  G   D+  V  LL    D+N  D +G T L  A    HV+ V+ LL++ A++  
Sbjct: 73  LSLASTGGYTDI--VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130

Query: 134 RDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTP 171
               G T    A   G  +V  +++    K+         P
Sbjct: 131 EADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 94.4 bits (236), Expect = 6e-24
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 77  LFMACR-GDVKGVEDLLNEGSD-VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           +      G++  +++ L +G + VN  D  G T L  A+  G +E V+ LL   A+    
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65

Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV 164
            +   +A + A   G  ++  +L  R   +
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVDI 95

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.9 bits (175), Expect = 3e-15
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 105 GRTALHIAACEGHVEVVKLLLSKKAN-IDARDRWGSTA---AADAKYYGNVEVYNILKAR 160
              ++H  A +G ++ +K  L K  N ++  D  G T    A+    +G +E    L   
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWAS---AFGEIETVRFLLEW 58

Query: 161 GAKV-PKTK--RTPMTVA 175
           GA      K   + +++A
Sbjct: 59  GADPHILAKERESALSLA 76

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  100 bits (251), Expect = 1e-25
 Identities = 42/183 (22%), Positives = 63/183 (34%), Gaps = 8/183 (4%)

Query: 76  LLFMACRGDVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           +  +A  G +    E +L + S     D D RTALH A   GH E+V+ LL     ++ +
Sbjct: 10  ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69

Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA---NPREVPEYELNPL 188
           D  G +    A   G  E+   L  +GA V    +   TP+  A   N  E+    L   
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE-G 128

Query: 189 ELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVV 248
                  D     +   A   G    V IL         +       L +          
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA 188

Query: 249 QFV 251
           +F+
Sbjct: 189 KFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 73.4 bits (180), Expect = 1e-15
 Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 7/154 (4%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 163
                 ++A      E+ + +L+ K+     D+   TA   A   G+ E+   L   G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 164 V-PKTK--RTPMTVA---NPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKI 217
           V  K     +P+ +A      E+ +  L      V   +         A          +
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVM 124

Query: 218 LDKESHKDPERINAFTHELTIVEKARHPNVVQFV 251
           L +       + +     +       +  +V  +
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 72.2 bits (177), Expect = 3e-15
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 3/112 (2%)

Query: 68  ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
            N +    L + A +   +    LL  G++ ++ D    TA+H AA +G++++V +LL  
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161

Query: 128 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVAN 176
           KA+ + +D  G+T    A     VE    L  +GA +    K ++TP+ VA 
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 67.6 bits (165), Expect = 1e-13
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 68  ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
           ++      +   A +G++K V  LL   +  N  D +G T LH+A  E  VE  K L+++
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194

Query: 128 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
            A+I   ++   T    AK  G + +     A G + 
Sbjct: 195 GASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 68  ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
           ++ +    L        V+  + L+ +G+ +   + + +T L +A   G + ++   L++
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAE 225

Query: 128 KANID 132
                
Sbjct: 226 GEEAS 230

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  100 bits (252), Expect = 1e-25
 Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 20/151 (13%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR---DR 136
            C G  + V+ L+  G +VN+ D DG T LH AA   +V+V K L+   A + A    D 
Sbjct: 78  VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM 137

Query: 137 WGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVANPREVPEYELNPLELQVR 193
             +    +    G  +    L     K+    K     +    P+       N  EL ++
Sbjct: 138 QTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ-------NDDELPMK 190

Query: 194 KADGIT---KGSYQVAKWNGTKVWVKILDKE 221
           + D +T   +      +W     W ++ DKE
Sbjct: 191 EGDCMTIIHREDEDEIEW----WWARLNDKE 217

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 95.0 bits (237), Expect = 2e-23
 Identities = 32/89 (35%), Positives = 45/89 (50%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           LL  +  G+   V+ ++ E  D +  + +G TALH A C GH E+VK L+    N++A D
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
             G T    A    NV+V   L   GA V
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAV 129

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 85.4 bits (212), Expect = 7e-20
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L    R    K   + +  G  V   +      L  ++ EG  ++V+ ++ +  +    +
Sbjct: 9   LPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN 67

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
             G TA  +A   G+ E+   L   G  V        TP+  A
Sbjct: 68  DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCA 110

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 68.8 bits (169), Expect = 6e-14
 Identities = 4/63 (6%), Positives = 16/63 (25%), Gaps = 1/63 (1%)

Query: 102 DLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG 161
           ++ G+ +L         +     ++    +            D+   G  ++   +    
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEV 60

Query: 162 AKV 164
              
Sbjct: 61  DDP 63

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 96.3 bits (241), Expect = 1e-24
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 77  LFMACR-GDVKGVEDLLNEG-SDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           +F  CR G+   V   L+   +D+N  D  G + LH A  EG   VV++L+ + A I+  
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68

Query: 135 DRWGSTA---AADAKYYGNVEVYNILKARGAKV 164
           +R   T    AA    +G+ ++   L    A +
Sbjct: 69  NRGDDTPLHLAA---SHGHRDIVQKLLQYKADI 98

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 95.2 bits (238), Expect = 4e-24
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 14/142 (9%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  ACR G    VE L+  G+ +N ++    T LH+AA  GH ++V+ LL  KA+I+A +
Sbjct: 43  LHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN 102

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA---NPREVPEYELNPLE 189
             G+     A ++G  +V   L A GA V    K    P+  A       + E       
Sbjct: 103 EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER------ 156

Query: 190 LQVRKADGITKGSYQVAKWNGT 211
            +    + + +  Y+   W GT
Sbjct: 157 AEKMGQN-LNRIPYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 72.1 bits (178), Expect = 1e-15
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKAN-IDARDRWGSTAAADAKYYGNVEVYNILKARGA 162
           +    +     EG+   V+L L    N ++  D  G +    A   G   V  +L  RGA
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 163 KV 164
           ++
Sbjct: 64  RI 65

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 95.9 bits (240), Expect = 1e-24
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 76  LLFMACRGDVKGVEDLLN-EGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           L   A RGDV+ V  LL+ E    ++++  G+TAL +    G   +   LL + A+ + +
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQ 64

Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           D  G++   DA   G ++   +L   GA V
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADV 94

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 94.4 bits (236), Expect = 4e-24
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 77  LFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR 136
           L +   G      +LL +G+  N  D  G + +H AA  G ++ +K+L+   A+++  D 
Sbjct: 40  LQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG 99

Query: 137 WGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
            G+     A   G+  V + L A  + +  +     TP+ +A
Sbjct: 100 TGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 87.1 bits (217), Expect = 2e-21
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           +  A R G +  ++ L+  G+DVN  D  G   +H+A  EGH  VV  L ++ +++  RD
Sbjct: 72  VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRD 130

Query: 136 RWGSTAAADAKYYGNVEVYNIL 157
             G T    A   G  ++ +IL
Sbjct: 131 ARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 65.5 bits (161), Expect = 2e-13
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 105 GRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTA---AADAKYYGNVEVYNILKAR 160
               L  AA  G V+ V+ LL ++  + DA +R+G TA         +G+  +   L  +
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM----FGSTAIALELLKQ 57

Query: 161 GAKV 164
           GA  
Sbjct: 58  GASP 61

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 62.4 bits (153), Expect = 3e-12
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 77  LFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLS 126
           + +A +     V   L   SD++  D  G T L +A   G  ++V +L  
Sbjct: 105 IHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 99.9 bits (250), Expect = 2e-24
 Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A     V+ V+ LL  G+DV++ D  G   LH A   GH EV +LLL   A ++A D
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121

Query: 136 RWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA---NPREVPEYELN 186
            W  T    AA       VEV ++L + GA         ++ + +A     RE   YE  
Sbjct: 122 LWQFTPLHEAA---SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK 178

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 94.5 bits (236), Expect = 2e-22
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 76  LLFMACRGDVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           LL  A  G+ +  +  L     + ++ D    T LH+AA    V +V+LLL   A++ A+
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87

Query: 135 DRWGSTA---AADAKYYGNVEVYNILKARGAKV 164
           D+ G      A     YG+ EV  +L   GA V
Sbjct: 88  DKGGLVPLHNAC---SYGHYEVTELLLKHGACV 117

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 92.6 bits (231), Expect = 8e-22
 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  AC  G  +  E LL  G+ VN++DL   T LH AA +  VEV  LLLS  A+    +
Sbjct: 95  LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGA 162
             G +A   A      E         +
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKGHS 181

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 92.2 bits (230), Expect = 1e-21
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AAD 144
            E LL +G++VN  + D  T LH+AA   H +V+++L    A ++A D  G TA   AA 
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA- 288

Query: 145 AKYYGNVEVYNILKARGAKV 164
               G+++   +L + G+  
Sbjct: 289 --LAGHLQTCRLLLSYGSDP 306

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 91.0 bits (227), Expect = 3e-21
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGH---VEVVKLLLSKKANID 132
           LL  A   D+  V+  L              TALH A    H    +V +LLL K AN++
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241

Query: 133 ARDRWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTP 171
            +++   T    AA      + +V  +L   GAK+       +T 
Sbjct: 242 EKNKDFMTPLHVAA---ERAHNDVMEVLHKHGAKMNALDSLGQTA 283

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 85.6 bits (213), Expect = 3e-19
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A        +E L   G+ +N++D  G+TALH AA  GH++  +LLLS  ++     
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS 310

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTKRTPMTVA 175
             G TAA      GN  V  IL +    +        +  A
Sbjct: 311 LQGFTAA----QMGNEAVQQIL-SESTPMRTSDVDYRLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 81.0 bits (201), Expect = 9e-18
 Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 86  KGVEDLLNEGSDVNSIDLDGRTALHIAACEGHV-EVVKLLLSKKANIDARDRWGSTA--- 141
           K   DL +  +         +  L  AA  G+  +++ LL     N  A D   ST    
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64

Query: 142 AADAKYYGNVEVYNILKARGAKV---PKTKRTP 171
           AA    Y  V +  +L   GA V    K    P
Sbjct: 65  AA---GYNRVRIVQLLLQHGADVHAKDKGGLVP 94

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 76.0 bits (188), Expect = 6e-16
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 27/123 (21%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKL---------------- 123
           A +  V+    LL+ G+D   ++  G++A+ +A      E +                  
Sbjct: 132 ASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADL 191

Query: 124 -----LLSKKANIDARDRWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPM 172
                 L+ +     + +   TA   A  + +    +V  +L  +GA V  K K   TP+
Sbjct: 192 AKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251

Query: 173 TVA 175
            VA
Sbjct: 252 HVA 254

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 67.5 bits (166), Expect = 5e-13
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A   G ++    LL+ GSD + I L G TA  +       E V+ +LS+   +   D
Sbjct: 284 LHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSD 338

Query: 136 RWGST-AAADAKYYGN 150
                  A+     G+
Sbjct: 339 VDYRLLEAS---KAGD 351

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 93.2 bits (233), Expect = 2e-24
 Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 1/87 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A R G ++ V+ LL  G+DVN+ D +GRT LH+AA  GH+EVVKLLL   A+++A+D
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGA 162
           + G T    A   G++EV  +L   GA
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 79.7 bits (198), Expect = 2e-19
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 163
           +GRT LH+AA  GH+EVVKLLL   A+++A+D+ G T    A   G++EV  +L   GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 164 V 164
           V
Sbjct: 61  V 61

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  100 bits (252), Expect = 2e-24
 Identities = 40/103 (38%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A R G    V+ LL   ++ N     G T LHIAA EGHVE V  LL K+A+     
Sbjct: 84  LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
           + G T    A  YG V V  +L  R A      K   TP+ VA
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 186

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 98.3 bits (246), Expect = 2e-23
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 10/106 (9%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A   G +  V++LL  G+  N  ++   T LH+AA  GH EV K LL  KA ++A+ 
Sbjct: 18  LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77

Query: 136 RWGSTA---AADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
           +   T    AA     G+  +  +L    A          TP+ +A
Sbjct: 78  KDDQTPLHCAA---RIGHTNMVKLLLENNANPNLATTAGHTPLHIA 120

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.6 bits (244), Expect = 3e-23
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A    ++  V+ LL  G   +S   +G T LHIAA +  VEV + LL    + +A  
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 242

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
             G T    A   G+ E+  +L ++ A      K   TP+ + 
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 285

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.6 bits (244), Expect = 3e-23
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A   G++K V+ LL   +DVN+    G + LH AA +GH ++V LLL   A+ +   
Sbjct: 315 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAK 163
             G+T  A AK  G + V ++LK    +
Sbjct: 375 SDGTTPLAIAKRLGYISVTDVLKVVTDE 402

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.6 bits (244), Expect = 3e-23
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 4/103 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A R G V+ V  LL + +    +   G T LH+AA  G V V +LLL + A+ +A  
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 176

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
           + G T    A ++ N+++  +L  RG           TP+ +A
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 96.4 bits (241), Expect = 7e-23
 Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +  + G V   + L+  G  V++    G T LH+A+  G++++VK LL  +A+++A+ 
Sbjct: 282 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 341

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
           + G +    A   G+ ++  +L   GA     +    TP+ +A
Sbjct: 342 KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 96.4 bits (241), Expect = 8e-23
 Identities = 38/103 (36%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L MA R G  +  + LL   + VN+   D +T LH AA  GH  +VKLLL   AN +   
Sbjct: 51  LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
             G T    A   G+VE    L  + A     TK   TP+ VA
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 153

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 95.6 bits (239), Expect = 2e-22
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 10/106 (9%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A + G  + V  LL++ ++ N  +  G T LH+ A EGHV V  +L+     +DA  
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308

Query: 136 RWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
           R G T    A+   +YGN+++   L    A V  KTK   +P+  A
Sbjct: 309 RMGYTPLHVAS---HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA 351

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 95.3 bits (238), Expect = 2e-22
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A + G V+  E LL   +  N+   +G T LH+A    ++++VKLLL +  +  +  
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
             G T    A     VEV   L   G     ++    TP+ +A
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 252

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 84.5 bits (210), Expect = 1e-18
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 95  GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 154
           G         G T LH+A+  GH+ +VK LL + A+ +  +    T    A   G+ EV 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 155 NILKARGAKV---PKTKRTPMTVA 175
             L    AKV    K  +TP+  A
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCA 87

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.1 bits (183), Expect = 4e-15
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLL---LSKKANID 132
           L  A + G    V  LL  G+  N +  DG T L IA   G++ V  +L     + + + 
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL 407

Query: 133 ARDRWGSTAAADAKY 147
             D+   +       
Sbjct: 408 VSDKHRMSFPETVDE 422

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 93.9 bits (235), Expect = 3e-24
 Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 4/103 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A R G ++ V+ LL  G+DVN+ D +GRT LH+AA  GH+EVVKLLL   A+++A+D
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
           + G T    A   G++EV  +L   GA V  K K  RTP+ +A
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 92.0 bits (230), Expect = 2e-23
 Identities = 36/75 (48%), Positives = 50/75 (66%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
           V+ LL  G+DVN+ D +GRT LH+AA  GH+EVVKLLL   A+++A+D+ G T    A  
Sbjct: 51  VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 110

Query: 148 YGNVEVYNILKARGA 162
            G++EV  +L   GA
Sbjct: 111 NGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 78.9 bits (196), Expect = 1e-18
 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 163
           +GRT LH+AA  GH+EVVKLLL   A+++A+D+ G T    A   G++EV  +L   GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 164 V-PKTK--RTP 171
           V  K K  RTP
Sbjct: 61  VNAKDKNGRTP 71

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 93.6 bits (234), Expect = 3e-24
 Identities = 40/89 (44%), Positives = 58/89 (65%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L   A  G  + V+ LL++G+DVN+   DG T LH+AA  GH E+VKLLL+K A+++AR 
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
           + G+T    AK  G+ E+  +L A+GA V
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLLDAKGADV 101

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 85.1 bits (212), Expect = 4e-21
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 141
           V+ LL +G+DVN+   DG T  H+A   GH E+VKLL +K A+++AR    S  
Sbjct: 58  VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 80.9 bits (201), Expect = 2e-19
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 95  GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 154
           G        DG T LH AA  GH E VK LLSK A+++AR + G+T    A   G+ E+ 
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 155 NILKARGAKV-PKTK--RTPMTVA 175
            +L A+GA V  ++K   TP  +A
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLA 82

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 95.1 bits (238), Expect = 3e-24
 Identities = 35/89 (39%), Positives = 51/89 (57%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           LL  A  G    V  L+  G+DVN+ D  G T LH+AA  GH+E+V++LL   A+++A D
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
             G T    A  +G++E+  +L   GA V
Sbjct: 78  HAGMTPLRLAALFGHLEIVEVLLKNGADV 106

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 92.4 bits (231), Expect = 4e-23
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
           VE LL  G+DVN++D  G T L +AA  GH+E+V++LL   A+++A D  G T    A  
Sbjct: 63  VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122

Query: 148 YGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
           +G++E+  +L   GA V  + K  +T   ++
Sbjct: 123 FGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 89.3 bits (223), Expect = 5e-22
 Identities = 31/70 (44%), Positives = 49/70 (70%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
           VE LL  G+DVN+ D++G T LH+AA  GH+E+V++LL   A+++A+D++G TA   +  
Sbjct: 96  VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISID 155

Query: 148 YGNVEVYNIL 157
            GN ++  IL
Sbjct: 156 NGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 78.9 bits (196), Expect = 3e-18
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 95  GSDVN-SIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEV 153
           GS  +     D    L  AA  G  + V++L++  A+++A D  G T    A + G++E+
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62

Query: 154 YNILKARGAKV 164
             +L   GA V
Sbjct: 63  VEVLLKNGADV 73

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 63.5 bits (156), Expect = 1e-12
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
           VE LL  G+DVN+ D  G+TA  I+   G+ ++ ++L   
Sbjct: 129 VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 94.0 bits (235), Expect = 4e-24
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 6/114 (5%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           LL  A  G    V  L+  G+DVN+ D  G T L++A   GH+E+V++LL   A+++A D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA---NPREVPEY 183
             G T    A + G++E+  +L   GA V  + K  +T   ++      ++ E 
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 88.2 bits (220), Expect = 5e-22
 Identities = 30/70 (42%), Positives = 47/70 (67%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
           VE LL  G+DVN++D  G T LH+AA  GH+E+ ++LL   A+++A+D++G TA   +  
Sbjct: 63  VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122

Query: 148 YGNVEVYNIL 157
            GN ++  IL
Sbjct: 123 NGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 78.2 bits (194), Expect = 4e-18
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 85  VKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD 144
           ++G     + GSD+          L  AA  G  + V++L++  A+++A+D +G T    
Sbjct: 1   MRGSHHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYL 53

Query: 145 AKYYGNVEVYNILKARGAKV 164
           A  +G++E+  +L   GA V
Sbjct: 54  ATAHGHLEIVEVLLKNGADV 73

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.1 bits (147), Expect = 1e-11
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLS 126
            E LL  G+DVN+ D  G+TA  I+   G+ ++ ++L  
Sbjct: 96  AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 96.2 bits (240), Expect = 5e-24
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDAR 134
           L  A + G++  + + L+    VN +D  G TAL+ A   GH ++V++L ++    ++ +
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ 136

Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           ++ G TA   A + G  ++  +L A+GA+ 
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGART 166

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 92.3 bits (230), Expect = 1e-22
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 77  LFMACR-GDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           L+ AC  G    VE L  +   ++N  +  G TALH AA +G+ ++V+LLL+K A  D R
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169

Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           +     A   A       +    +   A  
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDAVR 199

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 79.6 bits (197), Expect = 7e-18
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 1/74 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A   G    V+ LL +G+  +  +++ + A  +A       ++K      A     +
Sbjct: 144 LHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN 203

Query: 136 RWGSTAAADAKYYG 149
                   D+    
Sbjct: 204 AEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 79.2 bits (196), Expect = 8e-18
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 11/92 (11%)

Query: 77  LFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR 136
            +       KG   L+   + V          LH AA  G++  ++  L  +  ++  D+
Sbjct: 49  WWKGTS---KGRTGLI-PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK 104

Query: 137 WGSTA---AADAKYYGNVEVYNIL-KARGAKV 164
            GSTA   A    + G+ ++  +L      ++
Sbjct: 105 AGSTALYWAC---HGGHKDIVEMLFTQPNIEL 133

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 71.9 bits (177), Expect = 4e-15
 Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 6/89 (6%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           +F A    + +  ++L  E  D+  I     T       +G   ++         +  + 
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI-----PSNYVAEQA 70

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
                   +A   GN+            V
Sbjct: 71  ESIDNPLHEAAKRGNLSWLRECLDNRVGV 99

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.0 bits (154), Expect = 6e-12
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 2/72 (2%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 163
            G+  +  A           L  ++ +I        T        G   +  I     A+
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL--IPSNYVAE 68

Query: 164 VPKTKRTPMTVA 175
             ++   P+  A
Sbjct: 69  QAESIDNPLHEA 80

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 4/43 (9%), Positives = 10/43 (23%), Gaps = 1/43 (2%)

Query: 77  LFMACRGDVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHV 118
             MA        ++      +     + +       +  E H 
Sbjct: 177 FDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 95.8 bits (239), Expect = 8e-24
 Identities = 25/89 (28%), Positives = 44/89 (49%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           LL  A  G+++ V+  + E +D +  + +G TALH A C  +  +V  L++  AN+++ D
Sbjct: 25  LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
             G T    A    +  +   L   GA +
Sbjct: 85  SHGWTPLHCAASCNDTVICMALVQHGAAI 113

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 81.5 bits (202), Expect = 1e-18
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 88  VEDLLNEGSDVNSID---LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD 144
           +  +L +           L+    L  AA  G +EVV+  + +  +    +  G TA  +
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 145 AKYYGNVEVYNILKARGAKV---PKTKRTPMTVA---NPREVPEY 183
           A    N  + + L   GA V        TP+  A   N   +   
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMA 105

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 69.6 bits (171), Expect = 3e-14
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 7/102 (6%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDL-DGRTALHIAAC--EGHVEVVKLLLSKKANIDARDR 136
           A   D      L+  G+ + +  L DG TA        EG+ +    L   + ++   + 
Sbjct: 95  ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNS 154

Query: 137 WGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVA 175
               A  D       E+ +  +     V      + T    A
Sbjct: 155 GAVYALWDYSAEFGDEL-SFREGESVTVLRRDGPEETDWWWA 195

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 9/61 (14%), Positives = 14/61 (22%), Gaps = 1/61 (1%)

Query: 77  LFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVV-KLLLSKKANIDARD 135
           L+         +     E   V   D    T    AA  G    V +        +  + 
Sbjct: 160 LWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQR 219

Query: 136 R 136
            
Sbjct: 220 S 220

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 95.2 bits (238), Expect = 1e-23
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 77  LFMACRGDVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A R  V+G +EDL+N  +DVN++D  G++ALH AA   +V+   +LL   AN D ++
Sbjct: 96  LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 155

Query: 136 RWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
               T    AA     G+ E   +L    A         R P  +A
Sbjct: 156 NREETPLFLAA---REGSYETAKVLLDHFANRDITDHMDRLPRDIA 198

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 85.9 bits (214), Expect = 3e-20
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 88  VEDLLNEGSDV-NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK 146
           + D + +G+ + N  D  G TALH+AA     +  K LL   A+ + +D  G T    A 
Sbjct: 7   ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66

Query: 147 YYGNVEVYNILKARGAKVPKTK----RTPMTVA 175
                 V+ IL    A     +     TP+ +A
Sbjct: 67  SADAQGVFQILIRNRATDLDARMHDGTTPLILA 99

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 84.4 bits (210), Expect = 1e-19
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 77  LFMACRGDVKGVEDLL--NEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           L  A   D +GV  +L  N  +D+++   DG T L +AA      +++ L++  A+++A 
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121

Query: 135 DRWGSTA---AADAKYYGNVEVYNILKARGAKV 164
           D  G +A   AA      NV+   +L   GA  
Sbjct: 122 DDLGKSALHWAA---AVNNVDAAVVLLKNGANK 151

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 65.5 bits (161), Expect = 8e-13
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 131
           LF+A R G  +  + LL+  ++ +  D   R    IA    H ++V+LL       
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.9 bits (110), Expect = 5e-06
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 116 GHVEVVKLLLSKKANI-DARDRWGSTA---AADAKYYGNVEVYNILKARGAKV 164
               V+   + + A++ +  DR G TA   AA    Y   +    L    A  
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAA---RYSRSDAAKRLLEASADA 51

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 95.2 bits (238), Expect = 2e-23
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A   G V     L+  G+++++   D RT L  AA   H+E VK L+   A +D +D
Sbjct: 15  LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD 74

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTK----RTPMTVA 175
             GST    A   G+ EV   L + G      +     TPM  A
Sbjct: 75  AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 93.6 bits (234), Expect = 5e-23
 Identities = 19/75 (25%), Positives = 35/75 (46%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
            E LL    D++++++ G + LHIAA E   + V L LS+ +++  +++ G T    A  
Sbjct: 160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219

Query: 148 YGNVEVYNILKARGA 162
              V     +     
Sbjct: 220 NSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           +  A     V  V+ LL++GSD+N  D +    LH AA  G V++ ++LL+ K ++ A +
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN 174

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
             G +    A      +   +  +R + V  K K   TP+  A
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 87.1 bits (217), Expect = 1e-20
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 77  LFMACR-GDVKGVEDLLNEG-SDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           L +A + G  + V+ LL+ G  DVN  D  G T +  A    HV++VKLLLSK ++I+ R
Sbjct: 81  LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140

Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           D   +     A + G V++  IL A    +
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDL 170

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 85.2 bits (212), Expect = 6e-20
 Identities = 20/68 (29%), Positives = 30/68 (44%)

Query: 97  DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNI 156
           +      + R+ LH AA  GHV++  +L+   ANID       T   +A    ++E    
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 157 LKARGAKV 164
           L   GA V
Sbjct: 63  LIKAGALV 70

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.1 bits (160), Expect = 1e-12
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           L +A R      V   L+  SDV   + +G T L  A+    V     +     +
Sbjct: 181 LHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 95.6 bits (239), Expect = 2e-23
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 77  LFMACRGDVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A R  V+G +EDL+N  +DVN++D  G++ALH AA   +V+   +LL   AN D ++
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187

Query: 136 RWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
               T    AA     G+ E   +L    A         R P  +A
Sbjct: 188 NREETPLFLAA---REGSYETAKVLLDHFANRDITDHMDRLPRDIA 230

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 91.4 bits (228), Expect = 5e-22
 Identities = 21/83 (25%), Positives = 33/83 (39%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 139
           A   +V     LL  G++ +  +    T L +AA EG  E  K+LL   AN D  D    
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 224

Query: 140 TAAADAKYYGNVEVYNILKARGA 162
                A+   + ++  +L     
Sbjct: 225 LPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 87.1 bits (217), Expect = 2e-20
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 77  LFMACRGDVKGVEDLL--NEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           L  A   D +GV  +L  N  +D+++   DG T L +AA      +++ L++  A+++A 
Sbjct: 94  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 153

Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           D  G +A   A    NV+   +L   GA  
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKNGANK 183

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 82.9 bits (206), Expect = 6e-19
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 88  VEDLLNEGSDV-NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK 146
           + D + +G+ + N  D  G TALH+AA     +  K LL   A+ + +D  G T    A 
Sbjct: 39  ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98

Query: 147 YYGNVEVYNILKARGAKVPKTK----RTP 171
                 V+ IL    A     +     TP
Sbjct: 99  SADAQGVFQILIRNRATDLDARMHDGTTP 127

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 131
           LF+A R G  +  + LL+  ++ +  D   R    IA    H ++V+LL  +  + 
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 67.1 bits (165), Expect = 3e-13
 Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 14/82 (17%)

Query: 97  DVNSIDLDGRTALHIAACEG-------------HVEVVKLLLSKKANI-DARDRWGSTAA 142
           DVN    DG T L IA+C G                V+   + + A++ +  DR G TA 
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 143 ADAKYYGNVEVYNILKARGAKV 164
             A  Y   +    L    A  
Sbjct: 62  HLAARYSRSDAAKRLLEASADA 83

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 93.7 bits (234), Expect = 2e-23
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 12/107 (11%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
            + A R  D + +  LL E  DV+++D +GRTAL   A  G  + V+LL    A++D RD
Sbjct: 48  WWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 106

Query: 136 -RWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
            R G TA   AA    Y   EV   L   GA +  + +   T + +A
Sbjct: 107 MRGGLTALHMAA---GYVRPEVVEALVELGADIEVEDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 93.3 bits (233), Expect = 2e-23
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDL-DGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           LLF+A  G  K V  L   G+D++  D+  G TALH+AA     EVV+ L+   A+I+  
Sbjct: 80  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 139

Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           D  G TA   A+              G ++
Sbjct: 140 DERGLTALELAREILKTTPKGNPMQFGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 68.7 bits (169), Expect = 3e-14
 Identities = 13/56 (23%), Positives = 19/56 (33%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           A     + VE L+  G+D+   D  G TAL +A            +     I    
Sbjct: 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 17/115 (14%), Positives = 29/115 (25%), Gaps = 33/115 (28%)

Query: 94  EGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI---------------------- 131
                +    +G     I   +GH           A++                      
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQ 62

Query: 132 -------DARDRWGSTAAADAKYYGNVEVYNILKARGAKV----PKTKRTPMTVA 175
                  DA D  G TA       G+ +   +L   GA +     +   T + +A
Sbjct: 63  LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 93.7 bits (234), Expect = 2e-23
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 76  LLFMACRGDVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           LL  A + D K   E L +    V+ +D +G T L+IA     +E+ K L+ + A+I+ +
Sbjct: 9   LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68

Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK----RTPMTVA 175
           +    +    A   G  E+   +                  +  A
Sbjct: 69  NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPA 113

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.7 bits (203), Expect = 6e-19
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 77  LFMAC-RGDVKGVEDLLNEGS-DVNSIDLDGRTALHIAAC-----EGHVEVVKLLLSKKA 129
           L  A  +G +  V+ LL +G  D++  +  G TAL  A       + + ++VKLL+   A
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169

Query: 130 NIDARDRWGSTAAADAKYYGNVEVYNIL 157
           +   +D  G TA   A   G  E+  IL
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.7 bits (203), Expect = 6e-19
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 76  LLFMACRGDVKGVEDLLNEG-SDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDA 133
            L+   +G  + +  +L     D+N  +  G  AL  AA +GH++ VKLLL   + +ID 
Sbjct: 76  YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135

Query: 134 RDRWGSTA---AA--DAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
           ++ +G TA   A           ++  +L   GA    K    RT M  A
Sbjct: 136 QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 75.2 bits (186), Expect = 2e-16
 Identities = 14/63 (22%), Positives = 25/63 (39%)

Query: 102 DLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG 161
             +    L  A      +V ++L      +D  D  G+T    A +  ++E+   L  RG
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 162 AKV 164
           A +
Sbjct: 63  ADI 65

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 62.5 bits (153), Expect = 6e-12
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLS 126
           V+ L+  G+D +  D  GRTA+  A  +G+ E+ K+L  
Sbjct: 161 VKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 91.1 bits (227), Expect = 2e-23
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 139
           +          L+  GS + S   D    L  AA  G  + V++L++  A++ A+D+ GS
Sbjct: 2   SSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS 58

Query: 140 TAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVA 175
           T    A   G++EV  +L   GA V    K  +T   ++
Sbjct: 59  TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 90.7 bits (226), Expect = 3e-23
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A R G    V  L+  G+DV + D +G T LH+AA  GH+EVVKLLL   A++ A+D
Sbjct: 28  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87

Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
           ++G TA   +   GN ++  IL+
Sbjct: 88  KFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 112 AACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK-- 168
            +   H      L+ + +++ +          +A   G  +   IL A GA V  K K  
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 169 RTPMTVA 175
            TP+ +A
Sbjct: 58  STPLHLA 64

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 94.8 bits (237), Expect = 3e-23
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A     +  V+ LL  G++VN+    G +ALH A+  G + +V+ L+   A+   ++
Sbjct: 154 LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN 213

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGA 162
               T    A+    +++      R A
Sbjct: 214 CHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 87.5 bits (218), Expect = 1e-20
 Identities = 21/78 (26%), Positives = 33/78 (42%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
           V      G +++  +   +T LH+A       VV+LL++  A+  A DR G TAA  A  
Sbjct: 29  VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE 88

Query: 148 YGNVEVYNILKARGAKVP 165
           + +      L    A   
Sbjct: 89  HRSPTCLRALLDSAAPGT 106

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 83.7 bits (208), Expect = 3e-19
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 77  LFMACR-GDVKGVEDLLNEG----SDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 131
             +AC       +  LL+       D+ + + DG TALH+A      E V+LLL + A+I
Sbjct: 83  AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI 142

Query: 132 DARDR-WGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
           DA D   G +    A    ++ +  +L   GA V  +     + +  A
Sbjct: 143 DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 72.1 bits (178), Expect = 4e-15
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 98  VNSIDLDGRTALHIAACEGHVEVVKLLLS----KKANIDARDRWGSTAAADAKYYGNVEV 153
               D DG T LHIA  +G++  V  L++        +D  +    T    A       V
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 154 YNILKARGAKV 164
             +L   GA  
Sbjct: 62  VRLLVTAGASP 72

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 67.1 bits (165), Expect = 2e-13
 Identities = 10/51 (19%), Positives = 25/51 (49%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           + RG +  V  L+  G+D +  +    T L +A     +++++   ++ A+
Sbjct: 191 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 92.1 bits (230), Expect = 3e-23
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 77  LFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR 136
           L +   G+ +    LL  G++ +  D  G   +H AA  G ++ ++ LL  +A+++  D 
Sbjct: 42  LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101

Query: 137 WGSTAAADAKYYGNVEVYNILKARGAKVPKTK----RTP 171
            G+     A   G++ V   L    A     +     T 
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 91.7 bits (229), Expect = 5e-23
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L   A RGD++ +  LL    +VN+ +  GRTAL +    G+ E+ + LL + AN D +D
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKD 67

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
           R G     DA   G ++    L    A V
Sbjct: 68  RTGFAVIHDAARAGFLDTLQTLLEFQADV 96

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 88.6 bits (221), Expect = 7e-22
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGSTAAADAK 146
           ++ LL   +DVN  D +G   LH+AA EGH+ VV+ L+   A N+  R+  G TA   A+
Sbjct: 86  LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145

Query: 147 YYGNVEVYNILKARGA 162
            YG  EV ++++A GA
Sbjct: 146 LYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 74.0 bits (183), Expect = 2e-16
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYYGNVEVYNILKAR 160
                L  AA  G +E +  LL    N++A++ +G TA          GN E+   L  R
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK----LGNPEIARRLLLR 59

Query: 161 GAKV 164
           GA  
Sbjct: 60  GANP 63

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 91.7 bits (229), Expect = 5e-23
 Identities = 30/85 (35%), Positives = 40/85 (47%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 139
           A    V  VE LL  G+DV++ D  G   LH A   GH EV +LL+   A ++  D W  
Sbjct: 50  AGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF 109

Query: 140 TAAADAKYYGNVEVYNILKARGAKV 164
           T   +A   G  E+  +L   GA  
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADP 134

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 91.3 bits (228), Expect = 9e-23
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AAD 144
            E L+  G+ VN  DL   T LH AA +G  E+ KLLL   A+   ++R G+T       
Sbjct: 91  AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK- 149

Query: 145 AKYYGNVEVYNILKARGA 162
               G+ ++ ++L+   A
Sbjct: 150 ---DGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 89.4 bits (223), Expect = 5e-22
 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 69  NLDSTMQLLFMACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
           N ++  QLL  A  GDV+ V+ L      +   I+    T LH AA    V VV+ LL  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 128 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
            A++ A+D+ G     +A  YG+ EV  +L   GA V
Sbjct: 65  GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 101

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.1 bits (186), Expect = 8e-17
 Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 95  GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKYYGNVEV 153
           G+  NS   +    L  AA  G VE VK L + +  N    +   ST    A  Y  V V
Sbjct: 1   GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 154 YNILKARGAKV-PKTK--RTP 171
              L   GA V  K K    P
Sbjct: 58  VEYLLQHGADVHAKDKGGLVP 78

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 90.9 bits (227), Expect = 7e-23
 Identities = 27/71 (38%), Positives = 41/71 (57%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
           VE LL  G+DVN+ D+   TALH A    H EVV+LL+   A++  + ++  TA   +  
Sbjct: 83  VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID 142

Query: 148 YGNVEVYNILK 158
            GN ++  IL+
Sbjct: 143 NGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 90.9 bits (227), Expect = 8e-23
 Identities = 28/77 (36%), Positives = 41/77 (53%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
            E LL  G   ++     RT LH+AA EGH  +V++LL   A+++A+D    TA   A  
Sbjct: 50  TEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE 109

Query: 148 YGNVEVYNILKARGAKV 164
           + + EV  +L   GA V
Sbjct: 110 HNHQEVVELLIKYGADV 126

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 90.1 bits (225), Expect = 1e-22
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           LL  A  G    V  L+  G+   + D  G + LH+AA  GH    ++LL    + DAR 
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
           +   T    A   G+  +  +L   GA V
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADV 93

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 69.3 bits (171), Expect = 1e-14
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 163
           D    L  AA  G  + V++L++  A     D  G++    A  YG+     +L   G  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 164 V-PKTK--RTP 171
              +TK  RTP
Sbjct: 60  RDARTKVDRTP 70

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 93.3 bits (233), Expect = 2e-22
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A +      VE LL  G+D      +G T   +AA  G V+++KL LSK A+++  D
Sbjct: 43  LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD 102

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
            +G TA  +A  YG V+    L  RGA V
Sbjct: 103 FYGFTAFMEAAVYGKVKALKFLYKRGANV 131

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 90.6 bits (226), Expect = 2e-21
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAK 146
              LL+ G+DVN     G+T L +A  + H+ +V+ LL ++   I+  D  G TA   A 
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261

Query: 147 YYGNVEVYNILKARGAKV 164
                ++  +L  RGA  
Sbjct: 262 ELKLKKIAELLCKRGAST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 89.8 bits (224), Expect = 3e-21
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLD-GRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           L  A +  DV  V+ LL  G++VN  + + G T LH A      ++V+LLL   A+   R
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV 164
            + G+T    A   G+V++  +  ++GA V
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADV 98

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.0 bits (214), Expect = 9e-20
 Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 14/110 (12%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD---- 135
           A  G VK ++  L++G+DVN  D  G TA   AA  G V+ +K L  + AN++ R     
Sbjct: 80  AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139

Query: 136 ------RWGSTAAADAKYYGNVEVYNIL-KARGAKV-PKTK--RTPMTVA 175
                 + G+TA  DA   G+VEV  IL    GA V       R  +  A
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 79.1 bits (196), Expect = 3e-17
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 9/109 (8%)

Query: 76  LLFMACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHV----EVVKLLLSKKAN 130
           L+  A +G V+ ++ LL+E G+DVN+ D  GR AL  A           +  LLL   A+
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 131 IDARDRWGSTAAADAKYYGNVEVYNIL-KARGAKV-PKTK--RTPMTVA 175
           ++ R   G T    A    ++ +   L +    ++       +T + +A
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 78.3 bits (194), Expect = 4e-17
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 80  ACRGDVKGVEDLL-NEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
             +  +  V+ LL  E  ++N  D DG+TAL +A      ++ +LL  + A+ D  D
Sbjct: 227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 72.1 bits (178), Expect = 8e-15
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 7/65 (10%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDR-WGSTA---AADAKYYGNVEVYNILKA 159
           +    L  A     V++V+ LL   AN++ ++   G T    A         ++  +L  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV---QMSREDIVELLLR 60

Query: 160 RGAKV 164
            GA  
Sbjct: 61  HGADP 65

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           ++     G  +   +L+  G DV   D +  T LH AA    +++VK  +SK A +D   
Sbjct: 13  IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72

Query: 136 R-WGSTAAADAKYYGNVEVYNILKARGAKV 164
               ST    A   G++ +   L   GA  
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYGADP 102

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 91.3 bits (228), Expect = 4e-22
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 88  VEDLLNEGSDVNSID-LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK 146
              LL     VN  D     TALH A   G+  V+ LLL   AN+DA++  G +A   AK
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218

Query: 147 YYGNVEVYNILKARGAKV 164
              NV + N L+      
Sbjct: 219 QRKNVWMINHLQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 88.3 bits (220), Expect = 5e-21
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
           V  L+  G+D + ID +G + +H+AA  GH  +V  L++K  ++D  D+ G T    A Y
Sbjct: 92  VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151

Query: 148 YGN-VEVYNILKARGAKV 164
             + V+   +L      V
Sbjct: 152 RTHSVDPTRLLLTFNVSV 169

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 87.5 bits (218), Expect = 1e-20
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLD-GRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           L  A     +  V+  +++G+ V+ +  D   T LH A  +GH+ +V  L+   A+    
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105

Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA----NPREVPEY 183
           D  G +    A  +G+  +   L A+G  V    +   TP+  A    +  +    
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 85.2 bits (212), Expect = 8e-20
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGH-VEVVKLLLSKKANIDAR 134
           + +A + G    V  L+ +G DV+ +D +G T L  AA   H V+  +LLL+   +++  
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172

Query: 135 DRW-GSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
           D++  +TA   A   GN  V ++L   GA V  +     + + +A
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 80.2 bits (199), Expect = 4e-18
 Identities = 12/67 (17%), Positives = 24/67 (35%)

Query: 98  VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNIL 157
           +  ID      +  A   G  E  + L+    ++   D+   T    A     +++    
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 158 KARGAKV 164
            ++GA V
Sbjct: 62  ISKGAIV 68

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.9 bits (180), Expect = 2e-15
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A   G+   +  LL  G++V++ ++ G +AL +A    +V ++  L   +      +
Sbjct: 181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 93.0 bits (232), Expect = 2e-22
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLD-GRTALHIAACEGHVEVVKLLLSKKANIDARDRWG 138
               D + V  L + G+D+N  +   GRT LH+A       V++LLL   A+  AR   G
Sbjct: 166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG 225

Query: 139 STA---AADAKYYGNVEVYNILKARGAKVP-KTK--RTP 171
            T    A       N  +  +L+A GA  P       +P
Sbjct: 226 RTPLGSAL---LRPNPILARLLRAHGAPEPEDGGDKLSP 261

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 89.5 bits (223), Expect = 4e-21
 Identities = 13/74 (17%), Positives = 25/74 (33%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 139
                   +E LL  G+D  +    GRT L  A    +  + +LL +  A          
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL 259

Query: 140 TAAADAKYYGNVEV 153
           +  + +    + + 
Sbjct: 260 SPCSSSGSDSDSDN 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 89.5 bits (223), Expect = 5e-21
 Identities = 25/142 (17%), Positives = 42/142 (29%), Gaps = 17/142 (11%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDL---DGRTALHIAACEGHVEVVKLLLSKKANIDARDR 136
                   ++ LL   +    +DL    G+TALH+AA  G    V+ L +  A +   +R
Sbjct: 17  VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER 76

Query: 137 WGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKAD 196
            G TA   A          +L       P+         +    P+    P  +      
Sbjct: 77  GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD----- 131

Query: 197 GITKGSYQVAKWNGTKVWVKIL 218
                    ++ N         
Sbjct: 132 ---------SQPNPENEEEPRD 144

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 88.4 bits (220), Expect = 1e-20
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
            +      + +      +    + + + DG T LH+A      E+V+LL    A+++  +
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 136 R-WGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTP 171
              G T    A          V  +L   GA    +    RTP
Sbjct: 189 PTCGRTPLHLAV---EAQAASVLELLLKAGADPTARMYGGRTP 228

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 98  VNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN---IDARDRWGSTA---AADAKYYGNV 151
              +  DG TALH+A    H   +  LL   A    +D ++  G TA   AA     G  
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA---ILGEA 58

Query: 152 EVYNILKARGAKV 164
                L A GA V
Sbjct: 59  STVEKLYAAGAGV 71

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 25/117 (21%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRT--------------ALHIAACEGHVEVV 121
           L +ACR         LL           D                 A   +      E  
Sbjct: 82  LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141

Query: 122 KLLLSKKANIDARDRWGSTA---AADAKYYGNVEVYNILKARGAKV----PKTKRTP 171
                 +  ++A +  G T    A     + + E+  +L+  GA +    P   RTP
Sbjct: 142 PRDEDWRLQLEAENYDGHTPLHVAV---IHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 5/51 (9%), Positives = 11/51 (21%), Gaps = 1/51 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLS 126
           L  A    +      L   G+       D  +    +  +   +       
Sbjct: 229 LGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 89.4 bits (223), Expect = 8e-22
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
            E LL++GS+VN+ D  G+T L  +   G+ E+   LL   AN++ R+  G T    A  
Sbjct: 84  AEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK 143

Query: 148 YGNVEVYNILKARGAKV 164
           YG  E+   L   GA +
Sbjct: 144 YGRSEIVKKLLELGADI 160

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 88.6 bits (221), Expect = 1e-21
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +AC  G    ++ L+     +   D++G TAL  A     + + + LLSK +N++ +D
Sbjct: 39  LMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD 98

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
             G T    +  +G  E+   L   GA V
Sbjct: 99  FSGKTPLMWSIIFGYSEMSYFLLEHGANV 127

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 88.6 bits (221), Expect = 2e-21
 Identities = 30/70 (42%), Positives = 40/70 (57%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
              LL  G++VN  +L+G T L +A+  G  E+VK LL   A+I ARD  G TA A A+ 
Sbjct: 117 SYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARI 176

Query: 148 YGNVEVYNIL 157
           +G  EV  I 
Sbjct: 177 FGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 82.8 bits (206), Expect = 2e-19
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
                 +   + ++ L N        D   RT L +A   G    +  L+     ++ +D
Sbjct: 12  EKIKDEKSINQNLDFLRNYR------DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD 65

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
             GSTA   A     + +   L ++G+ V
Sbjct: 66  IEGSTALIWAVKNNRLGIAEKLLSKGSNV 94

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 62.4 bits (153), Expect = 6e-12
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA 129
           V+ LL  G+D+++ DL G TA   A   G  EV+K+    + 
Sbjct: 150 VKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 6/66 (9%)

Query: 99  NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILK 158
           + +D +G     I   +   + +  L       + RD +  T    A   G     + L 
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 159 ARGAKV 164
               K+
Sbjct: 56  ENFDKL 61

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 91.4 bits (228), Expect = 9e-22
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L  A    D K V+ LL  G D +  D  G TAL+ A   G+++ VKL + K   +    
Sbjct: 66  LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG 125

Query: 136 RWG-STAAADAKYYGNVEVYNILKARGAKVPKTK--RTPMTVA 175
           + G  T+   A    +V + +   +            + + + 
Sbjct: 126 KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHIT 168

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 91.4 bits (228), Expect = 1e-21
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
            + A    +V+ V  LLN G+  N ++      LH AA     ++VK+LL    +    D
Sbjct: 35  SYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFD 92

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
             G+TA   A   GN++   +   +  ++
Sbjct: 93  DKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 87.6 bits (218), Expect = 2e-20
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 74  MQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 133
           M L  +      K ++  L+   D    D+ G +A + A  + +V +V  LL+  A  + 
Sbjct: 2   MDLSRINT-WKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59

Query: 134 RDRWGSTA---AADAKYYGNVEVYNILKARGAKV 164
            +         AA      + ++  IL   G   
Sbjct: 60  LE--NEFPLHQAA---TLEDTKIVKILLFSGLDD 88

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 84.9 bits (211), Expect = 2e-19
 Identities = 15/127 (11%), Positives = 46/127 (36%), Gaps = 10/127 (7%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRT-ALHIAACEGHVEVVKLLLSKKANIDAR 134
           + +  + G V  +  LL+  +  N+ +       + +A     +E+++ L     NI + 
Sbjct: 165 IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA 224

Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV-PKTKRTPMTVANPREVPEYELNPLELQVR 193
           +              + E+  ++  +  +    +    + +    ++ E      EL++ 
Sbjct: 225 NLENV-------LLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLM 277

Query: 194 KADGITK 200
             + + K
Sbjct: 278 YVNCVKK 284

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 84.9 bits (211), Expect = 2e-19
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
            + A    DV  V   L+E            + +HI    GHV+++ LLL    + +  +
Sbjct: 133 FYHAVMLNDVSIVSYFLSEIPSTFD-LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNN 191

Query: 136 RWGSTAA-ADAKYYGNVEVYNILKARGAKV 164
                     A    ++E+   L      +
Sbjct: 192 SLLFIPDIKLAIDNKDIEMLQALFKYDINI 221

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 71.0 bits (175), Expect = 2e-14
 Identities = 8/83 (9%), Positives = 23/83 (27%), Gaps = 8/83 (9%)

Query: 76  LLFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
            + +A    D++ ++ L     ++        +A          E+ K+++ K     + 
Sbjct: 198 DIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSD 250

Query: 135 DRWGSTAAADAKYYGNVEVYNIL 157
                           +   N  
Sbjct: 251 SYTKDLDIVKNNKLDEIISKNKE 273

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 89.9 bits (224), Expect = 2e-21
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSID-LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWG 138
           +  G +  VE L++ G+DVN+ +  +GRTALH+A    + ++V LLL   A+++     G
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 184

Query: 139 STAAADAKYYGNVEVYNILKARGAKV 164
            +         +  +   L     + 
Sbjct: 185 YSPYQLTWGRPSTRIQQQLGQLTLEN 210

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 85.7 bits (213), Expect = 4e-20
 Identities = 15/78 (19%), Positives = 30/78 (38%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
           +  +  + + +N  +   +T LH+A      E+ + LL    + + RD  G+T    A  
Sbjct: 28  IRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 87

Query: 148 YGNVEVYNILKARGAKVP 165
            G +    +L        
Sbjct: 88  QGCLASVGVLTQSCTTPH 105

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 81.4 bits (202), Expect = 2e-18
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 12/86 (13%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN------IDARDRWGSTA 141
            E LL  G D    D  G T LH+A  +G +  V +L            + A +  G T 
Sbjct: 61  AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120

Query: 142 ---AADAKYYGNVEVYNILKARGAKV 164
              A+    +G + +  +L + GA V
Sbjct: 121 LHLAS---IHGYLGIVELLVSLGADV 143

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 81.4 bits (202), Expect = 2e-18
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 17/109 (15%)

Query: 77  LFMACR-GDVKGVEDLLNEGSD------VNSIDLDGRTALHIAACEGHVEVVKLLLSKKA 129
           L +AC  G +  V  L    +       + + + +G T LH+A+  G++ +V+LL+S  A
Sbjct: 82  LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 141

Query: 130 NIDARDRW-GSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTP 171
           +++A++   G TA   A       N ++ ++L   GA V   T    +P
Sbjct: 142 DVNAQEPCNGRTALHLAV---DLQNPDLVSLLLKCGADVNRVTYQGYSP 187

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.0 bits (175), Expect = 9e-15
 Identities = 10/74 (13%), Positives = 18/74 (24%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 139
               +   V  LL  G+DVN +   G +   +        + + L               
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 218

Query: 140 TAAADAKYYGNVEV 153
              +        E 
Sbjct: 219 DEESYDTESEFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 63.3 bits (155), Expect = 5e-12
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 101 IDLDGRTALHIAACEGH----VEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNI 156
           +  DG + LH+A         +EV++ +    A ++ ++    T    A      E+   
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 157 LKARGAKV 164
           L   G   
Sbjct: 64  LLGAGCDP 71

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 91.9 bits (229), Expect = 2e-21
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 80  ACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWG 138
           A   ++  V+ L+ E GS+ +  D DG+T + +AA EG +EVV  L+ + A+++A D   
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD 346

Query: 139 STAAADAKYYGNVEVYNILKARGAKV 164
            TA   A+   +  + +I      + 
Sbjct: 347 HTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK---ANIDARDR 136
                 + V  L+  G+D    +   R+ALH AA      ++  +L+      +I+  DR
Sbjct: 174 VLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233

Query: 137 WGSTA---AADAKYYGNVEVYNILKARGAKV 164
            G TA    A  +    V    +L  +GAKV
Sbjct: 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 85.8 bits (213), Expect = 2e-19
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 86  KGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA 145
              ++ +  G+DVN++D D  T L +A       +V  L+   A+    ++   +A   A
Sbjct: 147 HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA 206

Query: 146 KYYGNVEVYNIL---KARGAKV 164
               +  +   +         +
Sbjct: 207 AANRDFGMMVYMLNSTKLKGDI 228

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 18/110 (16%)

Query: 81  CRGDVKGVEDLLNEGSDVN--------SIDLDGRTALHIAACEGHVEVVKLLLSKK-ANI 131
            R  V   + L+ +G+ V+        S    GRTALH AA   ++ +VK L+ +K +N 
Sbjct: 247 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK 306

Query: 132 DARDRWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
           D +D  G T    AA     G +EV   L  +GA V        T   +A
Sbjct: 307 DKQDEDGKTPIMLAA---QEGRIEVVMYLIQQGASVEAVDATDHTARQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.8 bits (195), Expect = 8e-17
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 9/96 (9%)

Query: 77  LFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-------- 128
           L     G     E +  E  ++       RT LH  A     E  + L+  +        
Sbjct: 98  LHTEAAGSYAITEPITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156

Query: 129 ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           A+++A D   +T    A       +   L   GA  
Sbjct: 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP 192

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.8 bits (174), Expect = 4e-14
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID 132
           + +A + G ++ V  L+ +G+ V ++D    TA  +A    H  +V +    +   +
Sbjct: 317 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.0 bits (172), Expect = 7e-14
 Identities = 6/88 (6%), Positives = 17/88 (19%), Gaps = 9/88 (10%)

Query: 93  NEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYYG 149
                 N +              G+  +     +        +          A     G
Sbjct: 49  YIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA----AG 104

Query: 150 NVEVYNILKARGAKVPKTK--RTPMTVA 175
           +  +   +      +   +  RT +   
Sbjct: 105 SYAITEPITRESVNIIDPRHNRTVLHWI 132

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 89.9 bits (224), Expect = 9e-21
 Identities = 28/127 (22%), Positives = 43/127 (33%), Gaps = 14/127 (11%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           + +A R G    V  L+  G      +  G TALH+A   G V+  K L S         
Sbjct: 24  IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH 83

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVA---NPREVPEYELNPLELQV 192
             G      A      ++   L     +     + P ++    + REV E   +     V
Sbjct: 84  --GQKPIHLAVMANKTDLVVALVEGAKER---GQMPESLLNECDEREVNEIGSH-----V 133

Query: 193 RKADGIT 199
           +   G T
Sbjct: 134 KHCKGQT 140

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 87.2 bits (217), Expect = 7e-20
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 4/106 (3%)

Query: 73  TMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID 132
             + L +             + G+ V    +     +  AA     EV++LL  K   + 
Sbjct: 259 LTKEL-LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVV 317

Query: 133 ARDRWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 175
                G+  A   K      V  +  A  A V  +++       V+
Sbjct: 318 RSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.5 bits (210), Expect = 7e-19
 Identities = 11/118 (9%), Positives = 33/118 (27%), Gaps = 6/118 (5%)

Query: 77  LFMACR-GDVKGVEDLLNE-----GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           L  A    + + ++ +++         ++  +  G + LH A      +V    +    +
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID 236

Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPL 188
           ++  D   +     +     V +   L  +                        L+ +
Sbjct: 237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFV 294

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.2 bits (209), Expect = 1e-18
 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 1/89 (1%)

Query: 59  PVQDELTVPENLDSTMQLLFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGH 117
           P  +  TV  +    +  +  A      + ++ L  +  +V      G         +  
Sbjct: 276 PYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAA 335

Query: 118 VEVVKLLLSKKANIDARDRWGSTAAADAK 146
             V ++ L+  A +  R R  + ++A +K
Sbjct: 336 PAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 82.6 bits (205), Expect = 3e-18
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 97  DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYYGNVEV 153
           +    D +    +H+AA +G  + V+ L+    +   ++R+G TA   A     +G V+ 
Sbjct: 12  NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC---KFGCVDT 68

Query: 154 YNILKARGAKV-PKTKRTP 171
              L + G        + P
Sbjct: 69  AKYLASVGEVHSLWHGQKP 87

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.8 bits (203), Expect = 6e-18
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 11/85 (12%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLL-----SKKANIDARDRWGSTA- 141
           ++ L+  G+   + D    T L  A    + E + L++          +D  ++ G++  
Sbjct: 156 IKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL 215

Query: 142 --AADAKYYGNVEVYNILKARGAKV 164
             A         +V       G  V
Sbjct: 216 HWAI---LINWEDVAMRFVEMGIDV 237

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.0 bits (180), Expect = 8e-15
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 77  LFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEG--HVEVVKLLLSKKANIDAR 134
             +    D + V ++       +     G+TALH     G  ++E++K+L+   A+  A+
Sbjct: 115 ESLLNECDEREVNEI-----GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK 169

Query: 135 DRWGSTAAADAKYYGNVEVYNIL 157
           D+   T    A  + N E  +++
Sbjct: 170 DKADETPLMRAMEFRNREALDLM 192

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 85.2 bits (212), Expect = 5e-20
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDAR 134
           L +A      +  + L+  G+ V   D   +  LH AA  G +++++LL    K+ ++ +
Sbjct: 111 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170

Query: 135 DRWGSTAAADAKYYGNVEVYNIL-KARGAKV-PKTK--RTPMTVANPREVPEY 183
           D+ G T    A   G+ +   +L +  GA+             VA   +V ++
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF 223

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 84.8 bits (211), Expect = 8e-20
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 77  LFMACR-GDVKGVEDLLN--EGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 133
             +AC  G+++ V+ L +     D+N I   G T LH+A  +   EV + L+   A++  
Sbjct: 76  FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135

Query: 134 RDRWGSTAAADAKYYGNVEVYNILKARGA 162
           +D++       A   G++++  +L   G 
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGK 164

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 83.3 bits (207), Expect = 3e-19
 Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 10/105 (9%)

Query: 77  LFMACR-GDVKGVEDLL-NEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI--- 131
           L  AC   +   V++LL ++ S +   D DGR  LH +      E+   LLSK  N+   
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65

Query: 132 DARDRWGSTAAADAKYYGNVEVYNIL--KARGAKV-PKTK--RTP 171
           D  D  G T    A   GN+EV   L  +     +   T    T 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 67.1 bits (165), Expect = 2e-13
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 105 GRTALHIAACEGHV-EVVKLLLSKKANIDARDRWGSTA---AADAKYYGNVEVYNILKAR 160
               LH A  E    +V +LL SK + +  +D+ G      +     +   E+ + L ++
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV---SFQAHEITSFLLSK 58

Query: 161 GAKV 164
              V
Sbjct: 59  MENV 62

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 77  LFMACR-GDVKGVEDLL-NEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLS 126
           LF A   G       L+   G++ + +D  G  A  +A    + +V K  L+
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 226

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 83.8 bits (208), Expect = 2e-19
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 76  LLFMACRGDVKGVEDLL-NEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI--- 131
           LL  A   DV+ +  LL  EG +V+     G TALHIAA   ++E   +L+     +   
Sbjct: 7   LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66

Query: 132 --DARDRWGSTA---AADAKYYGNVEVYNILKARGAKV 164
              +    G TA   A       NV +   L ARGA V
Sbjct: 67  PMTSELYEGQTALHIAV---INQNVNLVRALLARGASV 101

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 76.9 bits (190), Expect = 7e-17
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 18/103 (17%)

Query: 80  ACRGDVKGVEDLLNEGSDV-----NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           A   +++    L+    ++      S   +G+TALHIA    +V +V+ LL++ A++ AR
Sbjct: 45  ALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR 104

Query: 135 DR-------------WGSTAAADAKYYGNVEVYNILKARGAKV 164
                          +G    + A   G+ E+  +L   GA +
Sbjct: 105 ATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI 147

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 76.9 bits (190), Expect = 8e-17
 Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 23/109 (21%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLD-------------GRTALHIAACEGHVEVVK 122
           L       +V  V  LL  G+ V++                 G   L  AAC G  E+V+
Sbjct: 79  LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVR 138

Query: 123 LLLSKKANIDARDRWGSTA---AADAKYYGNVEV----YNILKARGAKV 164
           LL+   A+I A+D  G+T            N       YN+L +     
Sbjct: 139 LLIEHGADIRAQDSLGNTVLHILI---LQPNKTFACQMYNLLLSYDGGD 184

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 74.6 bits (184), Expect = 4e-16
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVV----KLLLSKKANI 131
           L F AC G  + V  L+  G+D+ + D  G T LHI   + +         LLLS     
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184

Query: 132 DA------RDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
                    +  G T    A   GN+ ++  L  +   +
Sbjct: 185 HLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 105 GRTALHIAACEGHVEVV-KLLLSKKANIDARDRWGSTA---AADAKYYGNVEVYNILKAR 160
             + L +AA E  V+ + KLL  +   +  R   G TA   AA    Y N+E   +L   
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAA---LYDNLEAAMVLMEA 59

Query: 161 GAKVPKT 167
             ++   
Sbjct: 60  APELVFE 66

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 14/102 (13%)

Query: 77  LFMACR-------GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVE------VVKL 123
            F   +       G  +  +  L +G+D+ ++    +  +        V+      + KL
Sbjct: 79  FFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKL 138

Query: 124 LLSKK-ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
           + S+    +  +D+WG TA    K         +++    K 
Sbjct: 139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 13/120 (10%)

Query: 69  NLDSTMQLLFMACR-GDVKGVEDLLNEGSDVNSI---DLDGRTALHIAACEGHVEVVKLL 124
           N  S  + +  A   G  +   +L  +G +              L     E   ++   L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 125 LSKKANIDARDRWGSTAAADAKYYGN------VEVYNILKARGAKV-PKTK--RTPMTVA 175
           ++K A+I +R + G+T        G        E+  I   +GA +    K  +  +   
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 67.8 bits (166), Expect = 6e-14
 Identities = 7/45 (15%), Positives = 14/45 (31%)

Query: 91  LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
               G  +   D  G TAL           +K++       + ++
Sbjct: 140 FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 6/108 (5%)

Query: 162 AKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKIL 218
           +         +      +  + ++   +L +++   I  GS+  V  A+W+G+ V VKIL
Sbjct: 11  SDYDIPTTENLYFQGAMDGDDMDIPWCDLNIKEK--IGAGSFGTVHRAEWHGSDVAVKIL 68

Query: 219 DKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
             E     ER+N F  E+ I+++ RHPN+V F+GAVTQ   + IV EY
Sbjct: 69  -MEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEY 115

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 78.4 bits (193), Expect = 1e-16
 Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 2/87 (2%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD--RW 137
            C   +  +  LL     V  I  +   A  +AA  GH+ V+  L               
Sbjct: 103 GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE 162

Query: 138 GSTAAADAKYYGNVEVYNILKARGAKV 164
              A   A   G++ V N L       
Sbjct: 163 NYHAFRLAAENGHLHVLNRLCELAPTE 189

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 69.6 bits (170), Expect = 1e-13
 Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 12/102 (11%)

Query: 77  LFMACRG---DVKGVEDLLNEGSDVNSIDL--DGRTALHIAACEGHVEVVKLLLSKKANI 131
             +A       V  +  L           +  +   A  +AA  GH+ V+  L       
Sbjct: 132 FRLAAENGHLHV--LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 189

Query: 132 DARD--RWGSTAA--ADAKYYGNVEVYNILKARGAKVPKTKR 169
                      A   A A   G+  V N L      +   + 
Sbjct: 190 ATAMIQAENYYAFRWA-AVGRGHHNVINFLLDCPVMLAYAEI 230

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.1 bits (148), Expect = 7e-11
 Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 16/106 (15%)

Query: 77  LFMACRG---DVKGVEDLLNEGSDVNSIDL--DGRTALHIAACE-GHVEVVKLLLSKKAN 130
             +A       V  +  L        +  +  +   A   AA   GH  V+  LL     
Sbjct: 167 FRLAAENGHLHV--LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM 224

Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVAN 176
           +   +            YG   V   +     ++ K       ++N
Sbjct: 225 LAYAEIHEFE-------YGEKYVNPFIARHVNRL-KEMHDAFKLSN 262

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 59.6 bits (144), Expect = 2e-10
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 9/83 (10%)

Query: 63  ELTVPENLDSTMQLLFMACRGDVKGVEDLL---------NEGSDVNSIDLDGRTALHIAA 113
           +L           +L    R + + + D +            +   +I  D    L +A 
Sbjct: 268 DLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 327

Query: 114 CEGHVEVVKLLLSKKANIDARDR 136
             G+     LLLS  + +     
Sbjct: 328 RLGNQGACALLLSIPSVLALTKA 350

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 11/115 (9%)

Query: 69  NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAA---CEGHVEVVKLLL 125
           N++   QLL +      +  + L    SD +   +       +AA   C   ++ + LLL
Sbjct: 59  NMEQVRQLLCLYYAHYNRNAKQLW---SDAHKKGIKSEVICFVAAITGCSSALDTLCLLL 115

Query: 126 SKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK-----RTPMTVA 175
           +    +         A   A   G++ V N L                     +A
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA 170

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 131
           L +A R G+      LL+  S +     +     +I    G +++  + L    + 
Sbjct: 323 LRLALRLGNQGACALLLSIPSVLALTKANN---YYINETGGRLDLRAVALEHHHHH 375

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 75.1 bits (184), Expect = 9e-16
 Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 6/133 (4%)

Query: 24  SLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTV----PENLDSTMQLLFM 79
            + + +      D  +     +F ++     I+  P            E   S  Q   +
Sbjct: 44  KIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV 103

Query: 80  ACRGDVK-GVEDLLNEGSDVNS-IDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRW 137
           +    ++   +   N   ++N  +D  G T LH      ++E+VK L+   +N    D  
Sbjct: 104 SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM 163

Query: 138 GSTAAADAKYYGN 150
           G +    A    N
Sbjct: 164 GESCLVKAVKSVN 176

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 71.6 bits (175), Expect = 2e-14
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 85  VKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 141
           ++ ++      + +N+ D +G T L+IAA  G++ +V  LL   A+    ++ G   
Sbjct: 263 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP 319

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 87  GVEDLLNEGSDVNSIDLDGRTALHIAA----CEGHVEVVKLLLSKKANIDARDRWGSTAA 142
            +  ++ + +       + + +          +  +E + L       ++A+D  G T  
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 287

Query: 143 ADAKYYGNVEVYNILKARGAKV 164
             A   GN+ + + L   GA  
Sbjct: 288 NIAARLGNISIVDALLDYGADP 309

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 89  EDLLNEGSDVNSIDLDGRTALHIAACEGHV-EVVKLLLSKKANIDA-RDRWGSTA---AA 143
             L N+ S+ NS            + +  + EV     + + N++   D  G+T      
Sbjct: 80  TSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLT 139

Query: 144 DAKYYGNVEVYNILKARGAKV 164
                 N+E+   L   G+  
Sbjct: 140 ---SIANLELVKHLVKHGSNR 157

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAA 113
           A  G++  V+ LL+ G+D    +  G   +   A
Sbjct: 291 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.0 bits (182), Expect = 1e-15
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 16/102 (15%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
            L +        ++  +N           G+TALHIA    ++ +V LL+   A++ A  
Sbjct: 74  ALLLDVARKTDSLKQFVNA--SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA 131

Query: 136 R--------------WGSTAAADAKYYGNVEVYNILKARGAK 163
                          +G    + A     + +   L     +
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ 173

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 66.3 bits (162), Expect = 7e-13
 Identities = 28/136 (20%), Positives = 43/136 (31%), Gaps = 24/136 (17%)

Query: 77  LFMAC-RGDVKGVEDLLN-------EGSDVNSIDLD-GRTALHIAAC---EGHVEVVKLL 124
           +F A  + + + +E LL          +D    D + G+T L  A      G  + + LL
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 125 LSKKANIDA-----------RDRWGSTAAADAKYYGNVEVYNILKARGAKV-PKTKRTPM 172
           L      D+               G TA   A    N+ +  +L   GA V         
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136

Query: 173 TVANPREVPEYELNPL 188
                R    +   PL
Sbjct: 137 KKTKGRPGFYFGELPL 152

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 22/119 (18%), Positives = 33/119 (27%), Gaps = 23/119 (19%)

Query: 76  LLFMACRGDVKGVEDLLNEGS---DVNSIDLDGRTALHIAACEGH--------------- 117
           L   AC   +  V+ LL       D+++ D  G T LH                      
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE 211

Query: 118 -VEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVA 175
            + +   L       +  +R G T  A A   G + V   +  R              A
Sbjct: 212 ILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHE----PECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.0 bits (148), Expect = 5e-11
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 88  VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
              L          +  G T L +AA  G + V+  +L ++ +              A +
Sbjct: 216 GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAH 268

Query: 148 YGN 150
           + +
Sbjct: 269 HHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.1 bits (125), Expect = 4e-08
 Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 13/105 (12%)

Query: 95  GSDVNSIDLDGRTALHIAACEGHVEVVKLLL-------SKKANIDARDR-WGSTA---AA 143
            +      L  R ++  A  + + + ++ LL        +  + + +D   G T    A 
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 144 DAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPL 188
              + G  +   +L     K    K+     A+  +        L
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQ--FVNASYTDSYYKGQTAL 105

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 7/94 (7%)

Query: 176 NPREVPEYELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAF 232
               + E+++   +L++ +   I KG + QV   +W+G  V ++++      + +++ AF
Sbjct: 21  TSIFLQEWDIPFEQLEIGEL--IGKGRFGQVYHGRWHGE-VAIRLI-DIERDNEDQLKAF 76

Query: 233 THELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
             E+    + RH NVV F+GA      + I+   
Sbjct: 77  KREVMAYRQTRHENVVLFMGACMSPPHLAIITSL 110

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 184 ELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKILDKESHKDPER-INAFTHELTIV 239
           E++  EL + +   I  G + +V  A W G +V VK    +  +D  + I     E  + 
Sbjct: 3   EIDFAELTLEEI--IGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLF 60

Query: 240 EKARHPNVVQFVGAVTQNIPMMIVLEY 266
              +HPN++   G   +   + +V+E+
Sbjct: 61  AMLKHPNIIALRGVCLKEPNLCLVMEF 87

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 72.5 bits (178), Expect = 4e-15
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 13/82 (15%)

Query: 95  GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR-------------WGSTA 141
            +        G +ALHIA  +  ++ VKLL+   A++  R               +G   
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 142 AADAKYYGNVEVYNILKARGAK 163
            + A      +V   L     +
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQ 161

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.0 bits (174), Expect = 1e-14
 Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 19/109 (17%)

Query: 76  LLFMACRGDVKGVEDLLNEGS---DVNSIDLDGRTALH----------------IAACEG 116
           L   AC      V  LL        + + D  G T LH                I   +G
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199

Query: 117 HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVP 165
            +++   L       +  +  G T    A   G +E++  +  R     
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 69.4 bits (170), Expect = 5e-14
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 133
              G ++    L          +  G T L +AA EG +E+ + +L ++ +  A
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 62.9 bits (153), Expect = 9e-12
 Identities = 23/135 (17%), Positives = 36/135 (26%), Gaps = 23/135 (17%)

Query: 77  LFMAC-RGDVKGVEDLL--------NEGSDVNSIDLDGRTALHIAAC---EGHVEVVKLL 124
           LF    RG  + +  LL               +    G+T L  A     +G    +  L
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 125 LS-----------KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 173
           L              A        G +A   A    +++   +L   GA V         
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125

Query: 174 VANPREVPEYELNPL 188
             +      +   PL
Sbjct: 126 QKHQGTCFYFGELPL 140

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 15/95 (15%), Positives = 20/95 (21%), Gaps = 13/95 (13%)

Query: 105 GRTALHIAACEGHVEVVKLLLSK--------KANIDARDRWGSTA---AADAKYYGNVEV 153
            R  L      G  E +  LL            +       G T    A      G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 154 YNILKARGAKVPKTKRTPMTVANPREVPEYELNPL 188
              L          K  P+  A   +      + L
Sbjct: 62  IMPLLQIDKDSGNPK--PLVNAQCTDEFYQGHSAL 94

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 72.4 bits (178), Expect = 8e-15
 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 182 EYELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAFTHELTI 238
            + ++  E++V +   + +G++  V  AKW    V +K ++ ES +      AF  EL  
Sbjct: 2   LHMIDYKEIEVEEV--VGRGAFGVVCKAKWRAKDVAIKQIESESERK-----AFIVELRQ 54

Query: 239 VEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           + +  HPN+V+  GA     P+ +V+EY
Sbjct: 55  LSRVNHPNIVKLYGACLN--PVCLVMEY 80

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 180 VPEYELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAFTHEL 236
           +P     P +L   +   + KG + Q        T   + +  +    D E    F  E+
Sbjct: 2   MPHRIFRPSDLIHGEV--LGKGCFGQAIKVTHRETGEVMVMK-ELIRFDEETQRTFLKEV 58

Query: 237 TIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
            ++    HPNV++F+G + ++  +  + EY
Sbjct: 59  KVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 13/94 (13%)

Query: 182 EYELNPLELQVRKADGITKGSY-QV--AKW--NGTKVWVKIL----DKESHKDPERINAF 232
              L   E++  K   I KG +  V   +   + + V +K L     +   +  E+   F
Sbjct: 13  LPTLADNEIEYEKQ--IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEF 70

Query: 233 THELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
             E+ I+    HPN+V+  G +    P  +V+E+
Sbjct: 71  QREVFIMSNLNHPNIVKLYGLMHN--PPRMVMEF 102

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 70.0 bits (172), Expect = 3e-14
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 18/116 (15%)

Query: 182 EYELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAFTHELTI 238
              ++  +L       + +    ++   +W G  + VK+L K       +   F  E   
Sbjct: 4   HSGIDFKQLNFLTK--LNENHSGELWKGRWQGNDIVVKVL-KVRDWSTRKSRDFNEECPR 60

Query: 239 VEKARHPNVVQFVGAVTQ--NIPMMIVLEY----------HAKVSMPITPFLTLSF 282
           +    HPNV+  +GA          ++  +          H   +  +     + F
Sbjct: 61  LRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKF 116

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 70.0 bits (171), Expect = 4e-14
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 76  LLFMACR----GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 131
            L +A R      +  V+ L+    +++     G TALH      + E +KLLL  KA+I
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231

Query: 132 DARDRWGSTAAADAKYYGNVEVYNIL 157
           +  +  G T    AK   +     +L
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.0 bits (132), Expect = 5e-09
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 12/107 (11%)

Query: 81  CRGDVKGVEDLLNEGSDVNSI------DLDGRTALHIAACEG---HVEVVKLLLSKKANI 131
              D+ G+     +G D+              TALH+A        + +V  L+    N+
Sbjct: 139 KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL 198

Query: 132 DARDRWGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVA 175
           D +   GSTA        N E   +L    A +    ++  TP+ +A
Sbjct: 199 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           L   C   + + ++ LL   + +   +  G T L IA    H    +LL    + 
Sbjct: 209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 69.8 bits (171), Expect = 4e-14
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 16/101 (15%)

Query: 77  LFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR 136
           + +        + + +N       +   G+TALHIA        V+LL+ K A++ A+ R
Sbjct: 67  ILLDIAEKTGNMREFINS--PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 137 --------------WGSTAAADAKYYGNVEVYNILKARGAK 163
                         +G    + A       + + L   G K
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 66.0 bits (161), Expect = 8e-13
 Identities = 23/139 (16%), Positives = 38/139 (27%), Gaps = 29/139 (20%)

Query: 76  LLFMACRGDVKG----VEDLLNEGSDVNSIDL----DGRTALHIAA---CEGHVEVVKLL 124
           L  +  RG   G    +  LL     +   +      G+T L  A      G  + + +L
Sbjct: 9   LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPIL 68

Query: 125 LSK-----------KANIDARDRWGSTA---AADAKYYGNVEVYNILKARGAKVP-KTKR 169
           L              +        G TA   A             +L  +GA V  + + 
Sbjct: 69  LDIAEKTGNMREFINSPFRDVYYRGQTALHIAI---ERRCKHYVELLVEKGADVHAQARG 125

Query: 170 TPMTVANPREVPEYELNPL 188
                 +      +   PL
Sbjct: 126 RFFQPKDEGGYFYFGELPL 144

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 25/115 (21%)

Query: 76  LLFMACRGDVKGVEDLLNEGS---DVNSIDLDGRTALHIAACEGH---------VEVVKL 123
           L   AC      V  L   G    D+   D  G T LH                 ++  L
Sbjct: 144 LSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDL 203

Query: 124 LLSKKANIDA-------RDRWGSTA---AADAKYYGNVEVYNILKARGAKVPKTK 168
           LL K A +          +  G +    AA     G + ++  +  R        
Sbjct: 204 LLIKCAKLFPDTNLEALLNNDGLSPLMMAA---KTGKIGIFQHIIRREIADAAAH 255

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 13/95 (13%)

Query: 105 GRTALHIAA----CEGHVEVVKLLLSKKANIDARDRW----GSTA---AADAKYYGNVEV 153
            R  L         +G   ++  LL+ K  +   +      G T    A      G  + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 154 YNILKARGAKVPKTKRTPMTVANPREVPEYELNPL 188
             IL     K    +      +  R+V       L
Sbjct: 65  IPILLDIAEKTGNMR--EFINSPFRDVYYRGQTAL 97

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 70.0 bits (172), Expect = 5e-14
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 8/88 (9%)

Query: 182 EYELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAFTHELTI 238
           ++E+   ++ V +   I  GS+  V   KW+G  V VK+L   +   P+++ AF +E+ +
Sbjct: 18  DWEIPDGQITVGQR--IGSGSFGTVYKGKWHGD-VAVKML-NVTAPTPQQLQAFKNEVGV 73

Query: 239 VEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           + K RH N++ F+G  T    + IV ++
Sbjct: 74  LRKTRHVNILLFMGYSTAP-QLAIVTQW 100

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 70.0 bits (171), Expect = 5e-14
 Identities = 22/80 (27%), Positives = 40/80 (50%)

Query: 79  MACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWG 138
           +A +  +  V+ ++  G  +++   DG TALH AA     + +KLLL  +A +   +  G
Sbjct: 200 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG 259

Query: 139 STAAADAKYYGNVEVYNILK 158
            TA   A+   + E   +L+
Sbjct: 260 ETALDIARKKHHKECEELLE 279

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.8 bits (134), Expect = 3e-09
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 81  CRGDVKGVEDLLNEGSDVNSIDL------DGRTALHIA---ACEGHVEVVKLLLSKKANI 131
           C  D+  V +    G D                 LH+A   A +  + +V  ++    ++
Sbjct: 160 CNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL 219

Query: 132 DARDRWGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVA 175
           DA+   G+TA   A  Y   +   +L    A V    +   T + +A
Sbjct: 220 DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           L  A        ++ LL   + V +++  G TAL IA  + H E  +LL   +A 
Sbjct: 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 68.7 bits (167), Expect = 2e-13
 Identities = 36/152 (23%), Positives = 51/152 (33%), Gaps = 1/152 (0%)

Query: 8   LKRGISRQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVP 67
           +    S +   GSLR           S  P     R S    S            ++   
Sbjct: 170 VPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWV 229

Query: 68  ENLDSTMQLLFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLS 126
                    L  A     +   E LL  G++VN  D  GR  LH A   GH  +  L L 
Sbjct: 230 NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289

Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILK 158
           + A++ ARD  G      A    N ++  +L+
Sbjct: 290 RGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 55.6 bits (133), Expect = 4e-09
 Identities = 31/176 (17%), Positives = 52/176 (29%), Gaps = 8/176 (4%)

Query: 14  RQFSTGSLRRSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDST 73
           ++F T        R    +    P           +     +R  P      +       
Sbjct: 145 KKFLTKLPEIRGRRGGRGRPRGQPPVPP---KPSIRPRPGSLRSKPEPPSEDLGSLHPGA 201

Query: 74  MQLLFMACRGDVKGVEDLLNEGSDVNSI--DLDGRTALHIAACEGHVEVVKLLLSKKANI 131
           +          +  + D L  G+DVN +    D  T L  A     +   + LL   AN+
Sbjct: 202 LLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV 261

Query: 132 DARDRWGSTAAADAKYYGNVEVYNILKARGAK---VPKTKRTPMTVANPREVPEYE 184
           +  D  G      A   G+  +  +   RGA         R P+T+A      +  
Sbjct: 262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 64.9 bits (158), Expect = 4e-12
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 18/103 (17%)

Query: 179 EVPEYELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAFTHE 235
              E  L+   L++ +   I +G Y  V     +   V VK+    + ++      F +E
Sbjct: 4   AASEPSLDLDNLKLLEL--IGRGRYGAVYKGSLDERPVAVKVFSFANRQN------FINE 55

Query: 236 LTIVE--KARHPNVVQFVGA-----VTQNIPMMIVLEYHAKVS 271
             I       H N+ +F+           +  ++V+EY+   S
Sbjct: 56  KNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGS 98

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 64.8 bits (158), Expect = 6e-12
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 157 LKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSY-QV--AKWNG--T 211
           L          +  P          ++E+   ++ ++   G   G Y +V    W     
Sbjct: 189 LITTLHYPAPKRNKPTIYGVSPNYDKWEMERTDITMKHKLG--GGQYGEVYEGVWKKYSL 246

Query: 212 KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
            V VK L KE   + E    F  E  ++++ +HPN+VQ +G  T+  P  I+ E+
Sbjct: 247 TVAVKTL-KEDTMEVE---EFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 64.3 bits (157), Expect = 7e-12
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 163 KVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKILD 219
             PK     +   +      + LN  EL++ +  G  KG +  V    + G KV VK + 
Sbjct: 168 IKPKVMEGTVAAQDEFYRSGWALNMKELKLLQTIG--KGEFGDVMLGDYRGNKVAVKCI- 224

Query: 220 KESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP-MMIVLEY 266
           K          AF  E +++ + RH N+VQ +G + +    + IV EY
Sbjct: 225 KNDATA----QAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 268

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 64.0 bits (156), Expect = 8e-12
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 19/104 (18%)

Query: 177 PREVPEYELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAFT 233
           P  V       +++  +      KG Y +V   KW G KV VK+              + 
Sbjct: 28  PLLVQRTIAKQIQMVKQIG----KGRYGEVWMGKWRGEKVAVKVFFTTEEAS------WF 77

Query: 234 HELTI--VEKARHPNVVQFVGAVTQ----NIPMMIVLEYHAKVS 271
            E  I      RH N++ F+ A  +       + ++ +YH   S
Sbjct: 78  RETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGS 121

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 19/104 (18%)

Query: 177 PREVPEYELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAFT 233
           P  V       + LQ      I KG + +V   KW G +V VKI      +       + 
Sbjct: 33  PLLVQRTIARTIVLQES----IGKGRFGEVWRGKWRGEEVAVKIFSSREERS------WF 82

Query: 234 HELTI--VEKARHPNVVQFVGAVTQN----IPMMIVLEYHAKVS 271
            E  I      RH N++ F+ A  ++      + +V +YH   S
Sbjct: 83  REAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGS 126

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 165 PKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSY---QVAKWNG--TKVWVKILD 219
           P TK++ + +       ++ LN  +L + +  G  +G++      +     T V VK   
Sbjct: 91  PLTKKSGVVLHRAVPKDKWVLNHEDLVLGEQIG--RGNFGEVFSGRLRADNTLVAVKSC- 147

Query: 220 KESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           +E+     +   F  E  I+++  HPN+V+ +G  TQ  P+ IV+E 
Sbjct: 148 RETLPPDLKA-KFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMEL 193

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 10/89 (11%)

Query: 182 EYELNPLELQVRKADGITKGSY-QV--AKWNG-TKVWVKILDKESHKDPERINAFTHELT 237
           ++ ++P EL   +  G   G +  V    W    KV +K + +E     E    F  E  
Sbjct: 2   KWVIDPSELTFVQEIG--SGQFGLVHLGYWLNKDKVAIKTI-REGAMSEE---DFIEEAE 55

Query: 238 IVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           ++ K  HP +VQ  G   +  P+ +V E+
Sbjct: 56  VMMKLSHPKLVQLYGVCLEQAPICLVTEF 84

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 11/111 (9%)

Query: 165 PKTKRTPMTVANPREVP---EYELNPLELQVRKADG------ITKGSYQVAKWNGTKVWV 215
           P+    P T   P         E+    + + K  G      +  G  +V       V +
Sbjct: 23  PQFYAEPHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAI 82

Query: 216 KILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           K L K  + + +R + F  E +I+ +  HPN+++  G VT+    MIV EY
Sbjct: 83  KAL-KAGYTERQRRD-FLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEY 131

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 11/91 (12%)

Query: 181 PEYELNPLELQVRKADGITKGSY-QV--AKWNG--TKVWVKILDKESHKDPERINAFTHE 235
            ++E+   ++ ++   G   G Y +V    W      V VK L KE   + E    F  E
Sbjct: 6   DKWEMERTDITMKHKLG--GGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVE---EFLKE 59

Query: 236 LTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
             ++++ +HPN+VQ +G  T+  P  I+ E+
Sbjct: 60  AAVMKEIKHPNLVQLLGVCTREPPFYIITEF 90

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 20/124 (16%)

Query: 155 NILKARGAKVPKTKRTPMTVANPREVPEYELNPLEL----------QVRK--ADGITKGS 202
            +L  R    P  +R P+ +       EY  N +E           +V +  A G+    
Sbjct: 16  ELLLDRLHPNPMYQRMPLLLNPKLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYE 75

Query: 203 YQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMI 262
                   T V VK+L KE      +   F  E  ++ +  +PN+V+ +G      PM +
Sbjct: 76  PF------TMVAVKML-KEEASADMQ-ADFQREAALMAEFDNPNIVKLLGVCAVGKPMCL 127

Query: 263 VLEY 266
           + EY
Sbjct: 128 LFEY 131

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 61.5 bits (149), Expect = 7e-11
 Identities = 22/80 (27%), Positives = 40/80 (50%)

Query: 79  MACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWG 138
           +A +  +  V+ ++  G  +++   DG TALH AA     + +KLLL  +A +   +  G
Sbjct: 181 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG 240

Query: 139 STAAADAKYYGNVEVYNILK 158
            TA   A+   + E   +L+
Sbjct: 241 ETALDIARKKHHKECEELLE 260

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 12/118 (10%)

Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNS------IDLDGRTALHIA---ACEGHVEVV 121
               +L    C  D+  V +    G D                 LH+A   A +  + +V
Sbjct: 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190

Query: 122 KLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVAN 176
             ++    ++DA+   G+TA   A  Y   +   +L    A V    +   T + +A 
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 60.3 bits (147), Expect = 8e-11
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 181 PEYELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAFTHELT 237
             + LN  EL++ +  G  KG +  V    + G KV VK + K          AF  E +
Sbjct: 14  SGWALNMKELKLLQTIG--KGEFGDVMLGDYRGNKVAVKCI-KNDATA----QAFLAEAS 66

Query: 238 IVEKARHPNVVQFVGAVTQNIP-MMIVLEY 266
           ++ + RH N+VQ +G + +    + IV EY
Sbjct: 67  VMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 167 TKRTPMTVANPREVPEYELNPLELQVRKADGITKGSY-QV--AKWNG-TKVWVKILDKES 222
           +K  P T         +E++P +L   K  G   G +  V   KW G   V +K++ KE 
Sbjct: 5   SKNAPSTAGLGYG--SWEIDPKDLTFLKELG--TGQFGVVKYGKWRGQYDVAIKMI-KEG 59

Query: 223 HKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
               +    F  E  ++    H  +VQ  G  T+  P+ I+ EY
Sbjct: 60  SMSED---EFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY 100

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 11/94 (11%)

Query: 177 PREVPEYELNPLELQVRKADGITKGSY-QV--AKWNG-TKVWVKILDKESHKDPERINAF 232
           P    E+E+    L++ +  G   G + +V    +NG TKV VK L K+    P+   AF
Sbjct: 2   PWWEDEWEVPRETLKLVERLG--AGQFGEVWMGYYNGHTKVAVKSL-KQGSMSPD---AF 55

Query: 233 THELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
             E  ++++ +H  +V+    VTQ  P+ I+ EY
Sbjct: 56  LAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEY 88

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 9/68 (13%)

Query: 206 AKWNG-------TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI 258
               G         V +K L K+  + P R   F HE  +  + +HPNVV  +G VT++ 
Sbjct: 28  GHLFGPAPGEQTQAVAIKTL-KDKAEGPLR-EEFRHEAMLRARLQHPNVVCLLGVVTKDQ 85

Query: 259 PMMIVLEY 266
           P+ ++  Y
Sbjct: 86  PLSMIFSY 93

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 18/123 (14%)

Query: 158 KARGAKVPKTKRTPMTVANPREVP---EYELNPLELQVRKADGITKGSY-QV--AKWNG- 210
           + +  +V  +        + RE     ++E     L+  K  G   G++ +V  A   G 
Sbjct: 12  QLQMVQVTGSSDNEYFYVDFREYEYDLKWEFPRENLEFGKVLG--SGAFGKVMNATAYGI 69

Query: 211 ------TKVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIV 263
                  +V VK+L KE     ER  A   EL ++ +   H N+V  +GA T + P+ ++
Sbjct: 70  SKTGVSIQVAVKML-KEKADSSER-EALMSELKMMTQLGSHENIVNLLGACTLSGPIYLI 127

Query: 264 LEY 266
            EY
Sbjct: 128 FEY 130

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 12/111 (10%)

Query: 164 VPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSY-QV--AKWNG----TKVWVK 216
           + K         NP       L+  +++ +   G  +G++ QV  A+           +K
Sbjct: 1   MKKHHHHHHGKNNPDPTIYPVLDWNDIKFQDVIG--EGNFGQVLKARIKKDGLRMDAAIK 58

Query: 217 ILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEY 266
            + KE     +    F  EL ++ K   HPN++  +GA      + + +EY
Sbjct: 59  RM-KEYASKDDH-RDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEY 107

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 15/129 (11%)

Query: 151 VEVYNILKARGAKVPKTKRT---PMTVANPREVP---EYELNPLELQVRKADG------I 198
           +  Y+        +P T+         ++P +       E++P  +  +K  G      +
Sbjct: 1   MSYYHHHHHHDYDIPTTENLYFQGAMGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEV 60

Query: 199 TKGSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQN 257
            KG  + +       V +K L K  + + +R++ F  E  I+ +  H N+++  G +++ 
Sbjct: 61  YKGMLKTSSGKKEVPVAIKTL-KAGYTEKQRVD-FLGEAGIMGQFSHHNIIRLEGVISKY 118

Query: 258 IPMMIVLEY 266
            PMMI+ EY
Sbjct: 119 KPMMIITEY 127

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 15/83 (18%)

Query: 198 ITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAFTHELTI--VEKARHPNVVQFVG 252
           + KG Y +V    W G  V VKI      K       +  E  +      RH N++ F+ 
Sbjct: 16  VGKGRYGEVWRGSWQGENVAVKIFSSRDEKS------WFRETELYNTVMLRHENILGFIA 69

Query: 253 AVT----QNIPMMIVLEYHAKVS 271
           +       +  + ++  YH   S
Sbjct: 70  SDMTSRHSSTQLWLITHYHEMGS 92

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 181 PEYELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAFTHELT 237
                  + LQ+ +     +G +  V  A+     V VKI   +  +  +       E+ 
Sbjct: 17  ENLYFQSMPLQLLEV--KARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEY----EVY 70

Query: 238 IVEKARHPNVVQFVGAVTQ----NIPMMIVLEYHAK 269
            +   +H N++QF+GA  +    ++ + ++  +H K
Sbjct: 71  SLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEK 106

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 57.6 bits (140), Expect = 6e-10
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 184 ELNPLELQVRKADGITKGSY-QV--AKWNG-TKVWVKILDKESHKDPERINAFTHELTIV 239
           EL   E+ + K  G   G +  V   KW G   V VK++ KE     +    F  E   +
Sbjct: 4   ELKREEITLLKELG--SGQFGVVKLGKWKGQYDVAVKMI-KEGSMSED---EFFQEAQTM 57

Query: 240 EKARHPNVVQFVGAVTQNIPMMIVLEY 266
            K  HP +V+F G  ++  P+ IV EY
Sbjct: 58  MKLSHPKLVKFYGVCSKEYPIYIVTEY 84

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 18/110 (16%)

Query: 171 PMTVA-NPREVP---EYELNPLELQVRKADGITKGSY-QV--AKWNG-------TKVWVK 216
           P++++ +  ++    ++E     L + K  G  +G + +V  A           T V VK
Sbjct: 2   PLSLSVDAFKILEDPKWEFPRKNLVLGKTLG--EGEFGKVVKATAFHLKGRAGYTTVAVK 59

Query: 217 ILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           +L KE+    E       E  ++++  HP+V++  GA +Q+ P+++++EY
Sbjct: 60  ML-KENASPSEL-RDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEY 107

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 22/113 (19%)

Query: 172 MTVANPR--------EVPEYELNPLELQVRKADGITKGSY-QV--AKWNG-------TKV 213
           M   NP            E+E+   ++ + +  G  +GS+  V      G       T+V
Sbjct: 1   MASVNPEYFSAADVYVPDEWEVAREKITMSRELG--QGSFGMVYEGVAKGVVKDEPETRV 58

Query: 214 WVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
            +K +  E+    ERI  F +E +++++    +VV+ +G V+Q  P ++++E 
Sbjct: 59  AIKTV-NEAASMRERIE-FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMEL 109

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 203 YQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPM 260
           + + K +   KV VK+L K +    E+  A   EL I+    +H N+V  +GA T   P+
Sbjct: 68  FGLGKEDAVLKVAVKML-KSTAHADEK-EALMSELKIMSHLGQHENIVNLLGACTHGGPV 125

Query: 261 MIVLEY 266
           +++ EY
Sbjct: 126 LVITEY 131

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 57.6 bits (140), Expect = 9e-10
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 18/108 (16%)

Query: 176 NPREVP---EYELNPLELQVRKADGITKGSY-QV--AKWNG-------TKVWVKILDKES 222
           +P ++P   ++E     L   K  G   G++ +V  A   G         V VK+L K S
Sbjct: 8   DPTQLPYDHKWEFPRNRLSFGKTLG--AGAFGKVVEATAYGLIKSDAAMTVAVKML-KPS 64

Query: 223 HKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
               ER  A   EL ++     H N+V  +GA T   P +++ EY   
Sbjct: 65  AHLTER-EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCY 111

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 57.8 bits (140), Expect = 9e-10
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)

Query: 163 KVPKTKR--TPMTVANPREVP---EYELNPLELQVRKADG------ITKGSYQVAKWNGT 211
           K+P  +    P T  +P +       EL+   + + K  G      +  G  ++      
Sbjct: 15  KLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEI 74

Query: 212 KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
            V +K L K  + + +R + F  E +I+ +  HPN+++  G VT++ P+MIV EY
Sbjct: 75  SVAIKTL-KVGYTEKQRRD-FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEY 127

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 57.8 bits (140), Expect = 9e-10
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 18/127 (14%)

Query: 153 VYNILKARGAKVPKTKRTPMTVANPREVP---EYELNPLELQVRKADGITKGSY-QV--A 206
            Y + K R      T   P      +        E+    + + +  G   G++ +V   
Sbjct: 34  EYKLSKLR-TSTIMTDYNPNYCFAGKTSSISDLKEVPRKNITLIRGLG--HGAFGEVYEG 90

Query: 207 KWNG-------TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
           + +G        +V VK L  E   + + ++ F  E  I+ K  H N+V+ +G   Q++P
Sbjct: 91  QVSGMPNDPSPLQVAVKTL-PEVCSEQDELD-FLMEALIISKFNHQNIVRCIGVSLQSLP 148

Query: 260 MMIVLEY 266
             I+LE 
Sbjct: 149 RFILLEL 155

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 197 GITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ 256
           G+ +      + + T+V +K+L  ++H++     +F    +++ K  H ++V   G    
Sbjct: 27  GVRREVGDYGQLHETEVLLKVL-DKAHRNYSE--SFFEAASMMSKLSHKHLVLNYGVCVC 83

Query: 257 NIPMMIVLEY 266
               ++V E+
Sbjct: 84  GDENILVQEF 93

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 177 PREVPEYELNPLELQVRKADG------ITKGSYQVAKWNGTKVWVKILDKESHKDPERIN 230
           P +     +   +L++ +  G      + +G +         V VK L  +    PE ++
Sbjct: 7   PLQSLTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMD 66

Query: 231 AFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
            F  E+  +    H N+++  G V    PM +V E 
Sbjct: 67  DFIREVNAMHSLDHRNLIRLYGVVLTP-PMKMVTEL 101

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 17/115 (14%)

Query: 165 PKTKRTPMTVANPREVP---EYELNPLELQVRKADGITKGSY-QV--AKWNG-------T 211
                 P      +        E+    + + +  G   G++ +V   + +G        
Sbjct: 4   HHHHHNPNYCFAGKTSSISDLKEVPRKNITLIRGLG--HGAFGEVYEGQVSGMPNDPSPL 61

Query: 212 KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           +V VK L  E   + + ++ F  E  I+ K  H N+V+ +G   Q++P  I++E 
Sbjct: 62  QVAVKTL-PEVCSEQDELD-FLMEALIISKFNHQNIVRCIGVSLQSLPRFILMEL 114

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 17/115 (14%)

Query: 165 PKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSY-QV--AKWNG---------TK 212
            +     ++     E P +EL    L + K  G  +G++ QV  A+  G         TK
Sbjct: 46  FQGMLAGVSEYELPEDPRWELPRDRLVLGKPLG--EGAFGQVVLAEAIGLDKDKPNRVTK 103

Query: 213 VWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEY 266
           V VK+L K    + +  +    E+ +++   +H N++  +GA TQ+ P+ +++EY
Sbjct: 104 VAVKML-KSDATEKDL-SDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEY 156

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 179 EVPEYELNPLELQVRKADG------ITKGSYQVAKWNGTKVWVKILDKESHKDPERINAF 232
              +YE+    +++ +  G      + +G Y   +     V +K   K    D  R   F
Sbjct: 6   STRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTC-KNCTSDSVRE-KF 63

Query: 233 THELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
             E   + +  HP++V+ +G +T+N P+ I++E 
Sbjct: 64  LQEALTMRQFDHPHIVKLIGVITEN-PVWIIMEL 96

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 14/108 (12%)

Query: 163 KVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSY-QV--AKWNG-TKVWVKIL 218
            VP     P     P E   +E+    L++ K  G   G + +V  A +N  TKV VK +
Sbjct: 166 SVPCMSSKPQ---KPWEKDAWEIPRESLKLEKKLG--AGQFGEVWMATYNKHTKVAVKTM 220

Query: 219 DKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
            K      E   AF  E  +++  +H  +V+    VT+  P+ I+ E+
Sbjct: 221 -KPGSMSVE---AFLAEANVMKTLQHDKLVKLHAVVTKE-PIYIITEF 263

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 197 GITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVT 255
               G  +        V VK+L K+   + +  +    E+ +++   +H N++  +GA T
Sbjct: 54  AEAVGIDKDKPKEAVTVAVKML-KDDATEKDL-SDLVSEMEMMKMIGKHKNIINLLGACT 111

Query: 256 QNIPMMIVLEY 266
           Q+ P+ +++EY
Sbjct: 112 QDGPLYVIVEY 122

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 23/114 (20%), Positives = 50/114 (43%), Gaps = 18/114 (15%)

Query: 166 KTKRTPMTVANPREVP---EYELNPLELQVRKADGITKGSY-QV--AKWNG-------TK 212
            +      + NP+       + +   ++ ++   G  +G++ +V  A+ +          
Sbjct: 16  GSGLQGHIIENPQYFSDACVHHIKRRDIVLKWELG--EGAFGKVFLAECHNLLPEQDKML 73

Query: 213 VWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           V VK L KE+ +       F  E  ++   +H ++V+F G  T+  P+++V EY
Sbjct: 74  VAVKAL-KEASESAR--QDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEY 124

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 181 PEYELNPLELQVRKADG------ITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTH 234
           P+Y +   ++ + +  G      + +G Y   K     V VK   K+      +   F  
Sbjct: 5   PQYGIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTC-KKDCTLDNKE-KFMS 62

Query: 235 ELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           E  I++   HP++V+ +G + +  P  I++E 
Sbjct: 63  EAVIMKNLDHPHIVKLIGIIEEE-PTWIIMEL 93

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 55.6 bits (134), Expect = 7e-09
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 200 KGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
           +G Y   +     V +K   K    D  R   F  E   + +  HP++V+ +G +T+N P
Sbjct: 408 QGIYMSPENPAMAVAIKTC-KNCTSDSVREK-FLQEALTMRQFDHPHIVKLIGVITEN-P 464

Query: 260 MMIVLEY 266
           + I++E 
Sbjct: 465 VWIIMEL 471

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 194 KADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVG 252
           +A GI K   +        V VK+L K+   + +  +    E+ +++   +H N++  +G
Sbjct: 101 EAVGIDKDKPK----EAVTVAVKML-KDDATEKDL-SDLVSEMEMMKMIGKHKNIINLLG 154

Query: 253 AVTQNIPMMIVLEY 266
           A TQ+ P+ +++EY
Sbjct: 155 ACTQDGPLYVIVEY 168

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 15/107 (14%)

Query: 164 VPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSY-QV--AKWNG-TKVWVKILD 219
            P +K     +A       +E+    L++    G  +G + +V    WNG T+V +K L 
Sbjct: 247 CPTSKPQTQGLAKD----AWEIPRESLRLEVKLG--QGCFGEVWMGTWNGTTRVAIKTL- 299

Query: 220 KESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           K     PE   AF  E  +++K RH  +VQ    V++  P+ IV EY
Sbjct: 300 KPGTMSPE---AFLQEAQVMKKLRHEKLVQLYAVVSEE-PIYIVTEY 342

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 11/92 (11%)

Query: 182 EYELNPLELQVRKADGITKGSY-QV--AKWNG-TKVWVKILDKESHKDPERINAFTHELT 237
            +E+    L++    G  +G + +V    WNG T+V +K L K     PE   AF  E  
Sbjct: 178 AWEIPRESLRLEVKLG--QGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPE---AFLQEAQ 231

Query: 238 IVEKARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
           +++K RH  +VQ    V++  P+ IV EY +K
Sbjct: 232 VMKKLRHEKLVQLYAVVSEE-PIYIVTEYMSK 262

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 206 AKWNG----TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMM 261
             +        V VKIL K    DP   +    E  ++++  +P +V+ +G        M
Sbjct: 36  GYYQMKKVVKTVAVKIL-KNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE-SWM 93

Query: 262 IVLEY 266
           +V+E 
Sbjct: 94  LVMEM 98

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 200 KGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
           +   +    +  KV VK+L K        I  F  E   +++  HP+V + VG   ++  
Sbjct: 41  EAQLKQEDGSFVKVAVKML-KADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA 99

Query: 260 ------MMIVLEY 266
                  M++L +
Sbjct: 100 KGRLPIPMVILPF 112

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 200 KGSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI 258
           KG +          V +K L +E+            E  ++    +P+V + +G    + 
Sbjct: 33  KGLWIPEGEKVKIPVAIKEL-REATSPKAN-KEILDEAYVMASVDNPHVCRLLGICLTS- 89

Query: 259 PMMIVLEY 266
            + ++ + 
Sbjct: 90  TVQLITQL 97

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 16/102 (15%)

Query: 177 PREVPEYELNPLELQVRKADGITKGSY-QV--AKWNG-------TKVWVKILDKESHKDP 226
           P +  ++E     L++ K  G  +G++ QV  A   G         V VK+L KE     
Sbjct: 16  PYDASKWEFPRDRLKLGKPLG--RGAFGQVIEADAFGIDKTATCRTVAVKML-KEGATHS 72

Query: 227 ERINAFTHELTIVEK-ARHPNVVQFVGAVTQ-NIPMMIVLEY 266
           E   A   EL I+     H NVV  +GA T+   P+M+++E+
Sbjct: 73  EH-RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 113

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 206 AKWNG-------TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI 258
           A+            V VK L K+          F  E  ++   +H ++V+F G      
Sbjct: 34  AECYNLSPTKDKMLVAVKAL-KDPTLAAR--KDFQREAELLTNLQHEHIVKFYGVCGDGD 90

Query: 259 PMMIVLEY 266
           P+++V EY
Sbjct: 91  PLIMVFEY 98

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 200 KGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQN-I 258
            G+            VK L        E    F  E  I++   HPNV+  +G   ++  
Sbjct: 43  HGTLLDNDGKKIHCAVKSL-NRITDIGEVSQ-FLTEGIIMKDFSHPNVLSLLGICLRSEG 100

Query: 259 PMMIVLEY 266
             ++VL Y
Sbjct: 101 SPLVVLPY 108

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 200 KGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQN-I 258
            G+            VK L        E    F  E  I++   HPNV+  +G   ++  
Sbjct: 107 HGTLLDNDGKKIHCAVKSL-NRITDIGEVSQ-FLTEGIIMKDFSHPNVLSLLGICLRSEG 164

Query: 259 PMMIVLEY 266
             ++VL Y
Sbjct: 165 SPLVVLPY 172

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 200 KGSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI 258
           KG +     +    V +K++ ++         A T  +  +    H ++V+ +G    + 
Sbjct: 31  KGVWIPEGESIKIPVCIKVI-EDKSGRQSF-QAVTDHMLAIGSLDHAHIVRLLGLCPGS- 87

Query: 259 PMMIVLEY 266
            + +V +Y
Sbjct: 88  SLQLVTQY 95

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 200 KGSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI 258
           KG +          V +K L +E+            E  ++    +P+V + +G    + 
Sbjct: 33  KGLWIPEGEKVKIPVAIKEL-REATSPKAN-KEILDEAYVMASVDNPHVCRLLGICLTS- 89

Query: 259 PMMIVLEY 266
            + ++ + 
Sbjct: 90  TVQLITQL 97

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 200 KGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
            G Y     N  +  +K L     +  +   AF  E  ++    HPNV+  +G +     
Sbjct: 39  HGEYIDQAQNRIQCAIKSL-SRITEMQQV-EAFLREGLLMRGLNHPNVLALIGIMLPPEG 96

Query: 260 M-MIVLEY 266
           +  ++L Y
Sbjct: 97  LPHVLLPY 104

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 21/131 (16%)

Query: 147 YYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSY-QV 205
           ++ +   Y+I             +     +P +  E  L       +    + KG++  V
Sbjct: 5   HHHHHHDYDIPTTENLYFQGAMGSAFEDRDPTQFEERHL-------KFLQQLGKGNFGSV 57

Query: 206 --AKWNG------TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQN 257
              +++         V VK L + S ++  R   F  E+ I++  +H N+V++ G     
Sbjct: 58  EMCRYDPLQDNTGEVVAVKKL-QHSTEEHLR--DFEREIEILKSLQHDNIVKYKGVCYSA 114

Query: 258 I--PMMIVLEY 266
               + +++EY
Sbjct: 115 GRRNLKLIMEY 125

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 200 KGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
           +G+ +       KV VK +  ++    E    F  E   ++   HPNV++ +G   +   
Sbjct: 52  EGNLKQEDGTSLKVAVKTMKLDNSSQREIEE-FLSEAACMKDFSHPNVIRLLGVCIEMSS 110

Query: 260 M-----MIVLEY 266
                 M++L +
Sbjct: 111 QGIPKPMVILPF 122

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 18/110 (16%)

Query: 167 TKRTPMTVANPREVPEYELNPLEL-------QVRKADGITKGSYQVAKWN-GTKVWVKIL 218
           +++ P T  +P    +  L  +         +V          Y     N G +V VK L
Sbjct: 5   SEKKPATEVDPTHFEKRFLKRIRDLGEGHFGKVEL------CRYDPEGDNTGEQVAVKSL 58

Query: 219 DKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI--PMMIVLEY 266
            K              E+ I+    H N+V++ G  T++    + +++E+
Sbjct: 59  -KPESGGNHI-ADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEF 106

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 200 KGSYQ-VAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI 258
              Y  +    G  V VK L + S   P++   F  E+ I++      +V++ G      
Sbjct: 41  LCRYDPLGDNTGALVAVKQL-QHSG--PDQQRDFQREIQILKALHSDFIVKYRGVSYGPG 97

Query: 259 --PMMIVLEY 266
              + +V+EY
Sbjct: 98  RQSLRLVMEY 107

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 48.4 bits (116), Expect = 9e-07
 Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 181 PEYELNPLELQVRKADGITKGSY---QVAKWNG----TKVWVKILDKESHKDPERINAFT 233
            +  L    L +   + +  G++   +   +        V +K+L K+  +  +      
Sbjct: 2   KKLFLKRDNLLIADIE-LGCGNFGSVRQGVYRMRKKQIDVAIKVL-KQGTEKADT-EEMM 58

Query: 234 HELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
            E  I+ +  +P +V+ +G       +M+V+E 
Sbjct: 59  REAQIMHQLDNPYIVRLIGVCQAE-ALMLVMEM 90

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 200 KGSYQVAKWN-GTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI 258
              Y   + N G  V VK L + S ++  R   F  E+ I++  +H N+V++ G      
Sbjct: 28  MCRYDPLQDNTGEVVAVKKL-QHSTEEHLR--DFEREIEILKSLQHDNIVKYKGVCYSAG 84

Query: 259 --PMMIVLEY 266
              + +++EY
Sbjct: 85  RRNLKLIMEY 94

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 16/102 (15%)

Query: 177 PREVPEYELNPLELQVRKADGITKGSY-QV--AKWNG-------TKVWVKILDKESHKDP 226
           P +  ++E     L++ K  G  +G++ QV  A   G         V VK+L KE     
Sbjct: 11  PYDASKWEFPRDRLKLGKPLG--RGAFGQVIEADAFGIDKTATCRTVAVKML-KEGATHS 67

Query: 227 ERINAFTHELTI-VEKARHPNVVQFVGAVTQNI-PMMIVLEY 266
           E   A   EL I +    H NVV  +GA T+   P+M+++E+
Sbjct: 68  EH-RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 108

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 210 GTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI--PMMIVLEY 266
           G  V VK L K     P+  + +  E+ I+    H +++++ G         + +V+EY
Sbjct: 60  GEMVAVKAL-KADA-GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEY 116

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 200 KGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
           +G Y++ K     V +K+L + +  +         E  I+ +  +P +V+ +G       
Sbjct: 354 QGVYRMRKKQ-IDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE-A 409

Query: 260 MMIVLEY 266
           +M+V+E 
Sbjct: 410 LMLVMEM 416

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 170 TPMTVANPREVPEYELNPLELQVRKADGITKGSYQVA-----KWNGTKVWVKILDKESHK 224
            P         P+   N L    R    I +G +          +G  V +K +      
Sbjct: 13  VPQFQPQKALRPDMGYNTLA-NFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLM 71

Query: 225 DPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           D +       E+ ++++  HPNV+++  +  ++  + IVLE 
Sbjct: 72  DAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLEL 113

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 5/72 (6%)

Query: 200 KGS----YQVAKWNGTKVW-VKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAV 254
            GS    ++V      +++ VK          +R        +  +  +HP  V+   A 
Sbjct: 67  HGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAW 126

Query: 255 TQNIPMMIVLEY 266
            +   + +  E 
Sbjct: 127 EEGGILYLQTEL 138

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 200 KGSYQVA-----KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAV 254
           +GS+  A       +G +  +K ++       ER  +   E+ ++   +HPN+VQ+  + 
Sbjct: 34  EGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESR-REVAVLANMKHPNIVQYRESF 92

Query: 255 TQNIPMMIVLEY 266
            +N  + IV++Y
Sbjct: 93  EENGSLYIVMDY 104

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 198 ITKGSY-QVAK----WNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
           +  G++ +V K      G     K+++ +S ++ E       E+ I+    HP +V+ +G
Sbjct: 27  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDY---IVEIEILATCDHPYIVKLLG 83

Query: 253 AVTQNIPMMIVLEY 266
           A   +  + I++E+
Sbjct: 84  AYYHDGKLWIMIEF 97

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 30/257 (11%), Positives = 70/257 (27%), Gaps = 40/257 (15%)

Query: 40  NNMRFSFGRQ----SSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEG 95
           ++M F  G        +  +      D     +  D    +L        + ++ ++   
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL------SKEEIDHIIMSK 58

Query: 96  SDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYN 155
             V+         L         E+V+  + +   I+ +           +      +Y 
Sbjct: 59  DAVSGTLR-----LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 156 ILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGIT----KGSYQVAKWNGT 211
             + R     +       V   R  P  +L    L++R A  +      GS       G 
Sbjct: 114 EQRDRLYNDNQ-VFAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGS-------G- 162

Query: 212 KVWVKILDKESHKDPERINAFTHE---LTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHA 268
           K W   +  +     +       +   L +        V++ +    Q +   I   + +
Sbjct: 163 KTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML----QKLLYQIDPNWTS 215

Query: 269 KVSMPITPFLTLSFHKQ 285
           +        L +   + 
Sbjct: 216 RSDHSSNIKLRIHSIQA 232

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           + +G    +K   K      +  NA           +H +VV++  A  ++  M+I  EY
Sbjct: 33  RLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEY 92

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 209 NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           N  ++ +K + +    D         E+ + +  +H N+VQ++G+ ++N  + I +E 
Sbjct: 46  NQVRIAIKEIPER---DSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQ 100

>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A* Length = 534

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 17/95 (17%)

Query: 23  RSLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACR 82
             L    +   ++D  R+  +        LDP R           +   S   L + + +
Sbjct: 449 HDLVSLCNF-HNYDNLRHFAK-------KLDPRREGG--------DQRHSFGPLDYESLQ 492

Query: 83  GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGH 117
            ++  +++ + +     S +    T ++     G 
Sbjct: 493 QEL-ALKETVWKKVSPESNEDISTTVVYRMESLGE 526

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 198 ITKGSY-QVAK----WNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
           I  GS+  V       N   V +K +     +  E+      E+  ++K RHPN +Q+ G
Sbjct: 62  IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRG 121

Query: 253 AVTQNIPMMIVLEY 266
              +     +V+EY
Sbjct: 122 CYLREHTAWLVMEY 135

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 22/105 (20%)

Query: 169 RTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAK-----WNGTKVWVKILDKESH 223
             P+ +    +   Y+             I  G++ VA+          V VK +++   
Sbjct: 8   TGPLDMPIMHDSDRYDFVKD---------IGSGNFGVARLMRDKLTKELVAVKYIERG-A 57

Query: 224 KDPERINAFTHELTIVEKARHPNVVQF--VGAVTQNIPMMIVLEY 266
              E +     E+      RHPN+V+F  V     ++   I++EY
Sbjct: 58  AIDENV---QREIINHRSLRHPNIVRFKEVILTPTHL--AIIMEY 97

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 18/116 (15%)

Query: 158 KARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAK-------WNG 210
               A  P  K  P  + +PR    Y              + KG +  AK          
Sbjct: 18  PGAPAAAPPAKEIPEVLVDPRSRRRYVRGRF---------LGKGGF--AKCFEISDADTK 66

Query: 211 TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
                KI+ K     P +    + E++I     H +VV F G    N  + +VLE 
Sbjct: 67  EVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLEL 122

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 19/110 (17%)

Query: 162 AKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSY-QV----AKWNGTKVWVK 216
            +     R  +   +PR +       L+  V+    I +GS   V     K +G +V VK
Sbjct: 28  EQFKAALRMVVDQGDPRLL-------LDSYVK----IGEGSTGIVCLAREKHSGRQVAVK 76

Query: 217 ILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           ++D    +  E +    +E+ I+   +H NVV+   +      + +++E+
Sbjct: 77  MMDLRKQQRRELL---FNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEF 123

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 10/91 (10%)

Query: 182 EYELNPLELQVRKADGITKGSY-QVAK----WNGTKVWVKILDKESHKDPERINAFTHEL 236
            ++    +L+     G  +G+Y  V K     +G  + VK +      D +       +L
Sbjct: 16  HWDFTAEDLKDLGEIG--RGAYGSVNKMVHKPSGQIMAVKRIRSTV--DEKEQKQLLMDL 71

Query: 237 TIVEKA-RHPNVVQFVGAVTQNIPMMIVLEY 266
            +V ++   P +VQF GA+ +     I +E 
Sbjct: 72  DVVMRSSDCPYIVQFYGALFREGDCWICMEL 102

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 19/109 (17%)

Query: 172 MTVANPREVPEYELNPLELQVRKADG---------ITKGSYQVA-----KWNGTKVWVKI 217
           +     R  P  +L  L+                 + +GSY        K  G  V +K 
Sbjct: 2   LETVQLRNPPRRQLKKLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQ 61

Query: 218 LDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           +  E   D + I     E++I+++   P+VV++ G+  +N  + IV+EY
Sbjct: 62  VPVE--SDLQEI---IKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEY 105

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 182 EYELNPLELQVRKADGITKGSY-QVAK----WNGTKVWVKILDKESHKDPERINAFTHEL 236
            Y+    +L+     G   G+  QV K      G  + VK + +    + E       +L
Sbjct: 19  RYQAEINDLENLGEMG--SGTCGQVWKMRFRKTGHVIAVKQMRRSG--NKEENKRILMDL 74

Query: 237 TIVEKA-RHPNVVQFVGAVTQNIPMMIVLEY 266
            +V K+   P +VQ  G    N  + I +E 
Sbjct: 75  DVVLKSHDCPYIVQCFGTFITNTDVFIAMEL 105

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 200 KGSYQVAK-----WNGTKVWVKILDKESHKD-PERINAFTHELTIVEKARHPNVVQFVGA 253
           +G+Y   +          V VKI+D +   D PE I     E+ I +   H NVV+F G 
Sbjct: 17  EGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENI---KKEICINKMLNHENVVKFYGH 73

Query: 254 VTQNIPMMIVLEY 266
             +     + LEY
Sbjct: 74  RREGNIQYLFLEY 86

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 183 YELNPLELQVRKADGITKGSY-QVAK----WNGTKVWVKILDKESHKDPERINAFTHELT 237
            E+   +L+     G  +G+Y  V K     +G  + VK +      + +       +L 
Sbjct: 2   MEVKADDLEPIMELG--RGAYGVVEKMRHVPSGQIMAVKRIRATV--NSQEQKRLLMDLD 57

Query: 238 IVEKA-RHPNVVQFVGAVTQNIPMMIVLEY 266
           I  +    P  V F GA+ +   + I +E 
Sbjct: 58  ISMRTVDCPFTVTFYGALFREGDVWICMEL 87

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 178 REVPEYELNPLELQVRKADGITKGSY-QVAK----WNGTKVWVKILDKESHKDPERINAF 232
             +   + +P E    K + I KGS+ +V K         V +KI+D E  +D   I   
Sbjct: 11  PGMQNLKADP-EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAED--EIEDI 67

Query: 233 THELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
             E+T++ +   P V ++ G+  ++  + I++EY
Sbjct: 68  QQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY 101

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 200 KGSYQVA-----KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAV 254
            GSY        K +G  +  K LD  S  + E+      E+ ++ + +HPN+V++   +
Sbjct: 16  TGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLV-SEVNLLRELKHPNIVRYYDRI 74

Query: 255 --TQNIPMMIVLEY 266
               N  + IV+EY
Sbjct: 75  IDRTNTTLYIVMEY 88

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 11/60 (18%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
              G +V ++ ++ +     E I    +E+ ++ + ++PN+V ++ +      + +V+EY
Sbjct: 42  VATGQEVAIRQMNLQQQPKKELI---INEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 183 YELNPLELQVRKADGITKGSY-QVAK----WNGTKVWVKILDKESHKDPERINAFTHELT 237
            EL   + +     G   G+   V K     +G  +  K++  E    P   N    EL 
Sbjct: 28  GELKDDDFEKISELG--AGNGGVVFKVSHKPSGLVMARKLIHLEI--KPAIRNQIIRELQ 83

Query: 238 IVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           ++ +   P +V F GA   +  + I +E+
Sbjct: 84  VLHECNSPYIVGFYGAFYSDGEISICMEH 112

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           K  G  V V+ ++ E+  + E +     EL + +   HPN+V +      +  + +V  +
Sbjct: 49  KPTGEYVTVRRINLEACSN-EMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSF 107

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 15/58 (25%), Positives = 23/58 (39%)

Query: 209 NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
                  KI+ K     P +    + E++I     H +VV F G    N  + +VLE 
Sbjct: 39  TKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLEL 96

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 200 KGSYQVAK-----WNGTKVWVKILDKESHKD-PERINAFTHELTIVEKARHPNVVQFVGA 253
           +G+Y   +          V VKI+D +   D PE I     E+ I +   H NVV+F G 
Sbjct: 17  EGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENI---KKEICINKMLNHENVVKFYGH 73

Query: 254 VTQNIPMMIVLEY 266
             +     + LEY
Sbjct: 74  RREGNIQYLFLEY 86

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 200 KGSY-QVAKW----NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQF--VG 252
           +G+   V +      G    +K+ +  S   P   +    E  +++K  H N+V+   + 
Sbjct: 19  QGATANVFRGRHKKTGDLFAIKVFNNISFLRPV--DVQMREFEVLKKLNHKNIVKLFAIE 76

Query: 253 AVTQNIPMMIVLEY 266
             T     ++++E+
Sbjct: 77  EETTTRHKVLIMEF 90

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 200 KGSY-QVAKW----NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQF--VG 252
           +G+   V +      G    +K+ +  S   P   +    E  +++K  H N+V+   + 
Sbjct: 19  QGATANVFRGRHKKTGDLFAIKVFNNISFLRPV--DVQMREFEVLKKLNHKNIVKLFAIE 76

Query: 253 AVTQNIPMMIVLEY 266
             T     ++++E+
Sbjct: 77  EETTTRHKVLIMEF 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.98
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.98
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.98
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.98
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.91
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	94.59
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	94.42
4aoj_A	329	High affinity nerve growth factor receptor; transf	93.98
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	93.56
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	91.03
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	88.49
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	87.83
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	84.52
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	83.53
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	83.03
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	81.86
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	81.62
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	80.57

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.3e-40  Score=281.18  Aligned_cols=241  Identities=17%  Similarity=0.103  Sum_probs=190.3

Q ss_pred             CCCCCCCCccccccCCCCCccccCCCCC-----------CCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 022605           34 SFDPRRNNMRFSFGRQSSLDPIRRSPVQ-----------DELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSID  102 (294)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~  102 (294)
                      +......+.++.++..|+...+..++..           .......+..|.||||+||..|+.++|++|+++|++++.+|
T Consensus        10 ~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~   89 (285)
T 3d9h_A           10 HSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT   89 (285)
T ss_dssp             --------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEEC
T ss_pred             ccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            3445666777888888887666663222           12235578889999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCccccCCC--
Q 022605          103 LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT--KRTPMTVANPR--  178 (294)
Q Consensus       103 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~--~~t~l~~a~~~--  178 (294)
                      ..|.||||+|+..|+.++|++|+++|++++..|..|+||||+|+..|+.+++++|++.|++++..  |.||||+|+..  
T Consensus        90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~  169 (285)
T 3d9h_A           90 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGH  169 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999998644  99999999764  


Q ss_pred             -CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCC
Q 022605          179 -EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       179 -~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~  257 (294)
                       +++++|+..+ .+++..+..|.||||+|+..|+.+++++|++.+.... .+..|.||||+|+..++.+++++|...+.+
T Consensus       170 ~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad  247 (285)
T 3d9h_A          170 VECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGAD  247 (285)
T ss_dssp             HHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence             5567777654 5677788899999999999999999999998876555 477899999999999999999999998876


Q ss_pred             CCeEEEEecCCCCCCCccccccccccc
Q 022605          258 IPMMIVLEYHAKVSMPITPFLTLSFHK  284 (294)
Q Consensus       258 ~~l~~~~e~~~~g~l~~t~l~~a~~n~  284 (294)
                              ....+..|.|||++|+.+.
T Consensus       248 --------~~~~d~~g~t~l~~A~~~~  266 (285)
T 3d9h_A          248 --------TQAKNAEGKRPVELVPPES  266 (285)
T ss_dssp             --------TTCCCTTSCCGGGGSCTTS
T ss_pred             --------CCCcCCCCCCHHHHhcCcc
Confidence                    4557888999999999654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=9.5e-39  Score=266.50  Aligned_cols=213  Identities=23%  Similarity=0.176  Sum_probs=192.4

Q ss_pred             CCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 022605           66 VPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA  145 (294)
Q Consensus        66 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A  145 (294)
                      ...+..|.||||+||..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   84 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLA   84 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCC-CCCCC---CCCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhh
Q 022605          146 KYYGNVEVYNILKARG-AKVPK---TKRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKIL  218 (294)
Q Consensus       146 ~~~g~~~~v~~Ll~~g-a~~~~---~~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~L  218 (294)
                      +..|+.+++++|++.| ++++.   .|.||||+|+..   +++++|+..+ .+++..+..|.||||.|+..|+.+++++|
T Consensus        85 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  163 (237)
T 3b7b_A           85 AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-SDINIRDNEENICLHWAAFSGCVDIAEIL  163 (237)
T ss_dssp             HHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            9999999999999998 67654   499999999765   4566777644 56677788899999999999999999999


Q ss_pred             hccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccccccc
Q 022605          219 DKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTH  287 (294)
Q Consensus       219 l~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~  287 (294)
                      ++.+......+..|.||+|+|+..++.+++++|...+.+        ....+..|.|||++|+.+++..
T Consensus       164 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad--------~~~~d~~g~t~l~~A~~~~~~~  224 (237)
T 3b7b_A          164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD--------VTLKNKEGETPLQCASLNSQVW  224 (237)
T ss_dssp             HTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC--------TTCCCTTSCCHHHHSCTTCHHH
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC--------CCccCCCCCCHHHHHHHHHHHH
Confidence            999988777778899999999999999999999998876        4456788999999999999763

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.4e-39  Score=282.94  Aligned_cols=236  Identities=21%  Similarity=0.163  Sum_probs=205.5

Q ss_pred             CCCccccccCCCCCccccCCCCC-CCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc
Q 022605           39 RNNMRFSFGRQSSLDPIRRSPVQ-DELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGH  117 (294)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~  117 (294)
                      ..+.++.++..++.+.++.++.. +......+..|.||||+||..|+.++|++|+++|++++.+|..|.||||+|+..|+
T Consensus        24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  103 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH  103 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCC
Confidence            34567888889999988887776 44556778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-------------------------------
Q 022605          118 VEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPK-------------------------------  166 (294)
Q Consensus       118 ~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-------------------------------  166 (294)
                      .+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.                               
T Consensus       104 ~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~  183 (351)
T 3utm_A          104 YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL  183 (351)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHH
Confidence            9999999999999999999999999999999999999999999998753                               


Q ss_pred             --------------------------CCCCCccccCCC------CCcccccCcchhhhhcccCCCCCceeeeeecCchhh
Q 022605          167 --------------------------TKRTPMTVANPR------EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVW  214 (294)
Q Consensus       167 --------------------------~~~t~l~~a~~~------~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~  214 (294)
                                                .|.||||+|+..      +++++|+..+ .+++..+..|.||||+|+..|+.++
T Consensus       184 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~  262 (351)
T 3utm_A          184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEKNKDFMTPLHVAAERAHNDV  262 (351)
T ss_dssp             HHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC-CCcCCcCCCCCCHHHHHHHcCCHHH
Confidence                                      255777776443      2445555543 5677788889999999999999999


Q ss_pred             hHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccc
Q 022605          215 VKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFH  283 (294)
Q Consensus       215 v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n  283 (294)
                      +++|++.+.+....+..|.||||+|+..|+.+++++|...++++        ...+..|.||+++|...
T Consensus       263 v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~--------~~~~~~g~tal~~a~~~  323 (351)
T 3utm_A          263 MEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP--------SIISLQGFTAAQMGNEA  323 (351)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT--------TCCCTTSCCHHHHSCHH
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC--------CCcCCCCCChhhhhhHH
Confidence            99999999888878889999999999999999999999999874        34677788999998543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.4e-39  Score=272.44  Aligned_cols=203  Identities=18%  Similarity=0.117  Sum_probs=107.1

Q ss_pred             CCccccCCCCCCCCCCC-CCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 022605           51 SLDPIRRSPVQDELTVP-ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA  129 (294)
Q Consensus        51 ~~~~~~~~~~~~~~~~~-~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga  129 (294)
                      ..+.++.++..+..... .+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        35 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  114 (253)
T 1yyh_A           35 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA  114 (253)
T ss_dssp             -----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred             ChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            45555555555544433 35566666666666666666666666666666666666666666666666666666666655


Q ss_pred             -CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchhhhhcccCCCCCc
Q 022605          130 -NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLELQVRKADGITKGS  202 (294)
Q Consensus       130 -d~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~  202 (294)
                       +++..+..|.||||+|+..|+.+++++|++.|++++..   |+||||+|+..   +++++|+..+ .+++..+..|.||
T Consensus       115 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tp  193 (253)
T 1yyh_A          115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETP  193 (253)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred             CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCH
Confidence             56666666666666666666666666666666665432   55555555432   3344444332 3444445555555


Q ss_pred             eeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhh
Q 022605          203 YQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAV  254 (294)
Q Consensus       203 l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~  254 (294)
                      ||+|+..|+.+++++|++.|++....+..|.||+++|++.|+.+|+++|...
T Consensus       194 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            5555555555555555555554444445555555555555555555555443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2e-39  Score=276.92  Aligned_cols=241  Identities=22%  Similarity=0.183  Sum_probs=208.4

Q ss_pred             CCccccccCCCCCccccCCCCCCCCCCCC-CCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q 022605           40 NNMRFSFGRQSSLDPIRRSPVQDELTVPE-NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHV  118 (294)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~  118 (294)
                      .+.++.++..++.+.++.++..+...... +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   85 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSV   85 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCH
Confidence            34566677788888888888877666555 77899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-------------CCCCccccCCC---CCcc
Q 022605          119 EVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT-------------KRTPMTVANPR---EVPE  182 (294)
Q Consensus       119 ~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-------------~~t~l~~a~~~---~~~~  182 (294)
                      +++++|+++|++++..|..|+||||+|+..|+.+++++|++.|++++..             |.||||+|+..   ++++
T Consensus        86 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  165 (285)
T 1wdy_A           86 KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK  165 (285)
T ss_dssp             HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999999999999988543             88999999654   5667


Q ss_pred             cccCcchhhhhcccCCCCCceeeeeecCc----hhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhh-hcCC
Q 022605          183 YELNPLELQVRKADGITKGSYQVAKWNGT----KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGA-VTQN  257 (294)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~t~l~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~-~~~~  257 (294)
                      +|+...+.+++..+..|.||||.|+..++    .+++++|++.+......+..|.||+|+|+..++.+++++|.. .+.+
T Consensus       166 ~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~  245 (285)
T 1wdy_A          166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE  245 (285)
T ss_dssp             HHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC
T ss_pred             HHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC
Confidence            77766457777888889999999999999    889999999888777777889999999999999999999988 5654


Q ss_pred             CCeEEEEecCCCCCCCccccccccccccccc
Q 022605          258 IPMMIVLEYHAKVSMPITPFLTLSFHKQTHT  288 (294)
Q Consensus       258 ~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~  288 (294)
                              ....+..|.||||+|+.+++..+
T Consensus       246 --------~~~~~~~g~t~l~~A~~~~~~~i  268 (285)
T 1wdy_A          246 --------INDTDSDGKTALLLAVELKLKKI  268 (285)
T ss_dssp             --------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             --------ccccCCCCCcHHHHHHHcCcHHH
Confidence                    44567788999999999987654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.7e-38  Score=271.18  Aligned_cols=209  Identities=22%  Similarity=0.243  Sum_probs=182.5

Q ss_pred             CCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 022605           67 PENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  146 (294)
Q Consensus        67 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~  146 (294)
                      ..+.+|.||||.||..|+.++|++|+++|+++|.+|..|.||||+||..|+.++|++|+++|++++..|..|+||||+|+
T Consensus        35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           35 KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             CCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCC---CCCCccccCCCCC---cccccCcchhhh--------------------------hc
Q 022605          147 YYGNVEVYNILKARGAKVPKT---KRTPMTVANPREV---PEYELNPLELQV--------------------------RK  194 (294)
Q Consensus       147 ~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~~~---~~~l~~~~~~~~--------------------------~~  194 (294)
                      ..|+.+++++|+++|++++..   |.||||+|+..+.   +++++.....++                          ..
T Consensus       115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  194 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhh
Confidence            999999999999999998644   9999999987543   333332211111                          12


Q ss_pred             ccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCc
Q 022605          195 ADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPI  274 (294)
Q Consensus       195 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~  274 (294)
                      .+..|.||||+|+..|+.+++++|++.+.+....+..|.||||+|+..|+.+++++|...+.++        ...+..|.
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~--------~~~d~~g~  266 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM--------EAVNKVGQ  266 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--------TCCCTTSC
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC--------CCcCCCCC
Confidence            3456889999999999999999999999887777889999999999999999999999998764        45688899


Q ss_pred             ccccccccc
Q 022605          275 TPFLTLSFH  283 (294)
Q Consensus       275 t~l~~a~~n  283 (294)
                      |||++|...
T Consensus       267 t~l~~A~~~  275 (299)
T 1s70_B          267 TAFDVADED  275 (299)
T ss_dssp             CTTTSCCSG
T ss_pred             CHHHHHHHH
Confidence            999999764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=7.2e-39  Score=273.58  Aligned_cols=211  Identities=17%  Similarity=0.086  Sum_probs=168.7

Q ss_pred             CCCCCCchhHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHH
Q 022605           66 VPENLDSTMQLLFMACRGDVKGVEDLLNEGSD---VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA  142 (294)
Q Consensus        66 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L  142 (294)
                      ...+..|.||||+||..|+.++|++|+++|++   ++.+|..|+||||+|+..|+.++|++|+++|++++..|..|+|||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL   82 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            45678899999999999999999999999988   888999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCC-----------------------------------------------C---CCCCCCCc
Q 022605          143 ADAKYYGNVEVYNILKARGAK-----------------------------------------------V---PKTKRTPM  172 (294)
Q Consensus       143 ~~A~~~g~~~~v~~Ll~~ga~-----------------------------------------------~---~~~~~t~l  172 (294)
                      |+|+..|+.+++++|+++|++                                               +   +..|.|||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  162 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence            999999999999999998865                                               2   23388999


Q ss_pred             cccCCC---CCcccccCcchhhhhcccC-CCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchh
Q 022605          173 TVANPR---EVPEYELNPLELQVRKADG-ITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVV  248 (294)
Q Consensus       173 ~~a~~~---~~~~~l~~~~~~~~~~~~~-~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv  248 (294)
                      |+|+..   +++++|+..+ .+++..+. .|.||||+|+..|+.++|++|++.|+.....+..|.||+|+|+..++.+++
T Consensus       163 ~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v  241 (282)
T 1oy3_D          163 HVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA  241 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHH
Confidence            988664   4566666544 45555554 488999999999999999999988887777778888999999999999999


Q ss_pred             hhhhhhcCCCCeEEEEecCCCCCCCcccccccccccc
Q 022605          249 QFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQ  285 (294)
Q Consensus       249 ~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~  285 (294)
                      ++|...++++        ...+..|.|||++|....+
T Consensus       242 ~~Ll~~ga~~--------~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          242 RLLRAHGAPE--------PEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHHTTCCC--------CCCC---------------
T ss_pred             HHHHHcCCCc--------CcCCCcccccccccCCccc
Confidence            9998888874        4567778899998876543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.6e-38  Score=263.35  Aligned_cols=217  Identities=19%  Similarity=0.147  Sum_probs=189.6

Q ss_pred             CCCCCCchhHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCH
Q 022605           66 VPENLDSTMQLLFMACRGDVKGVEDLLN----EGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA  141 (294)
Q Consensus        66 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~  141 (294)
                      ...|.+|.||||+||..|+.++|++|++    .|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            3567889999999999999999999997    789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCC----CCC---CCCCCCccccCCC---CCcccccCcchhhhhccc-CCCCCceeeeeecC
Q 022605          142 AADAKYYGNVEVYNILKARGA----KVP---KTKRTPMTVANPR---EVPEYELNPLELQVRKAD-GITKGSYQVAKWNG  210 (294)
Q Consensus       142 L~~A~~~g~~~~v~~Ll~~ga----~~~---~~~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~-~~~~t~l~~A~~~g  210 (294)
                      ||+|+..|+.+++++|++.++    +++   ..|.||||+|+..   +++++|+..+ .+++..+ ..|.||||+|+..|
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~  161 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAVENN  161 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCCcHHHHHHHcC
Confidence            999999999999999999987    554   3499999999654   4566777654 4555555 67899999999999


Q ss_pred             chhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccccccccCC
Q 022605          211 TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTSG  290 (294)
Q Consensus       211 ~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~~~  290 (294)
                      +.+++++|++.+.+....+..|.||+|+|+..++.+++++|...+.++        ...+..|.|||++|+.+++..++-
T Consensus       162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~--------~~~~~~g~tpl~~A~~~~~~~i~~  233 (241)
T 1k1a_A          162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS--------SLKNCHNDTPLMVARSRRVIDILR  233 (241)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT--------TCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC--------CCcCCCCCCHHHHHHhcCcHHHHh
Confidence            999999999999888777888999999999999999999999988864        446778999999999999887654


Q ss_pred             C
Q 022605          291 G  291 (294)
Q Consensus       291 ~  291 (294)
                      .
T Consensus       234 ~  234 (241)
T 1k1a_A          234 G  234 (241)
T ss_dssp             C
T ss_pred             h
Confidence            3

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.6e-38  Score=266.98  Aligned_cols=189  Identities=21%  Similarity=0.232  Sum_probs=143.5

Q ss_pred             CCchhHHHHHHHcC-------------CHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC
Q 022605           70 LDSTMQLLFMACRG-------------DVKGVEDLLNEGSDVNS-IDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD  135 (294)
Q Consensus        70 ~~g~t~L~~Aa~~g-------------~~~~v~~Ll~~g~~~~~-~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~  135 (294)
                      .+|.||||+|+..|             +.+++++|+++|++++. .|..|+||||+|+..|+.++|++|+++|++++..|
T Consensus         8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~   87 (253)
T 1yyh_A            8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD   87 (253)
T ss_dssp             --------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            46899999999987             89999999999999865 58999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCC---CCCCCccccCC---CCCcccccCcchhhhhcccCCCCCceeeeee
Q 022605          136 RWGSTAAADAKYYGNVEVYNILKARGA-KVPK---TKRTPMTVANP---REVPEYELNPLELQVRKADGITKGSYQVAKW  208 (294)
Q Consensus       136 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~---~~~t~l~~a~~---~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~  208 (294)
                      ..|+||||+|+..|+.+++++|++.|+ +++.   .|.||||+|+.   .+++++|+..+ .+++..+..|.||||+|+.
T Consensus        88 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~  166 (253)
T 1yyh_A           88 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAA  166 (253)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT-CCTTCBCTTSCBHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHH
Confidence            999999999999999999999999987 6644   49999999965   46677777654 6777788889999999999


Q ss_pred             cCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCC
Q 022605          209 NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP  259 (294)
Q Consensus       209 ~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~  259 (294)
                      .|+.+++++|++.++.....+..|.||+|+|+..++.+++++|...+.++.
T Consensus       167 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  217 (253)
T 1yyh_A          167 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD  217 (253)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc
Confidence            999999999999998887788889999999999999999999999988764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-38  Score=269.70  Aligned_cols=211  Identities=16%  Similarity=0.101  Sum_probs=154.7

Q ss_pred             CCCCCchhHHHHHHHcCCHHHHHHHHhcCCC--------CCCCCCCCCcHHHHHHHcCcH-HHHHHHHhCCCCCCCCCCC
Q 022605           67 PENLDSTMQLLFMACRGDVKGVEDLLNEGSD--------VNSIDLDGRTALHIAACEGHV-EVVKLLLSKKANIDARDRW  137 (294)
Q Consensus        67 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--------~~~~~~~g~TpLh~A~~~g~~-~~v~~Ll~~gad~~~~~~~  137 (294)
                      ..|..+.+||+.||..|+.++|++||+.|++        ++..+..|.||||+|+..++. .++++|++.|+|+|..|.+
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            4566788899999999999999999988764        456677888999999887765 4788999999999999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCc
Q 022605          138 GSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGT  211 (294)
Q Consensus       138 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~  211 (294)
                      |+||||+|+..|+.++|++|++.|++++..   |.||+++|+..   +++++|+..+ .+++..+..|.||||+|+..|+
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~n~~d~~g~TpL~~A~~~g~  164 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGH  164 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTCCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCC
Confidence            999999999999999999999999888544   88999988553   4566666544 5667778889999999999999


Q ss_pred             hhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccccccc
Q 022605          212 KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQT  286 (294)
Q Consensus       212 ~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~  286 (294)
                      .++|++|++.|++....+..|.||||+|+..|+.++|++|+..++++        ...+..|.||||+|+.|+++
T Consensus       165 ~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~--------~~~d~~G~TpL~~A~~~~~i  231 (269)
T 4b93_B          165 HELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV--------QVLNKRQRTAVDCAEQNSKI  231 (269)
T ss_dssp             GGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS--------CCCCTTSCCSGGGSCTTCHH
T ss_pred             HHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC--------CCcCCCCCCHHHHHHhCCcH
Confidence            99999999999888778888999999999999999999999998874        44677889999999998863

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.1e-38  Score=284.24  Aligned_cols=243  Identities=18%  Similarity=0.123  Sum_probs=179.8

Q ss_pred             CCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 022605           37 PRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEG  116 (294)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g  116 (294)
                      ..+.+.++.++..++.+.++.++..+......+..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|
T Consensus       144 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  223 (437)
T 1n11_A          144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN  223 (437)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcC
Confidence            34445556666666666666666666666666667777777777777777777777777777777777777777777777


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchh
Q 022605          117 HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLEL  190 (294)
Q Consensus       117 ~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~  190 (294)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..   |.||||+|+..   +++++|+..+ .
T Consensus       224 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~  302 (437)
T 1n11_A          224 QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-V  302 (437)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-C
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-c
Confidence            777777777777777777777777777777777777777777777776433   77777777543   3455555443 5


Q ss_pred             hhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCC
Q 022605          191 QVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKV  270 (294)
Q Consensus       191 ~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g  270 (294)
                      +++..+..|.||||+|+..|+.++|++|++.+++....+..|.||||+|+..|+.++|++|...++++        ...+
T Consensus       303 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~--------~~~~  374 (437)
T 1n11_A          303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP--------NEVS  374 (437)
T ss_dssp             CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS--------CCCC
T ss_pred             cCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCC--------CCCC
Confidence            56667777888888888888888888888888777777778888888888888888888888888764        3456


Q ss_pred             CCCccccccccccccccc
Q 022605          271 SMPITPFLTLSFHKQTHT  288 (294)
Q Consensus       271 ~l~~t~l~~a~~n~~~~~  288 (294)
                      ..|.|||++|..++...+
T Consensus       375 ~~g~t~l~~A~~~g~~~~  392 (437)
T 1n11_A          375 SDGTTPLAIAKRLGYISV  392 (437)
T ss_dssp             SSSCCHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHcCcHHH
Confidence            678889998888876543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-38  Score=282.11  Aligned_cols=242  Identities=13%  Similarity=0.091  Sum_probs=197.6

Q ss_pred             CCCCCCccccccCCCCCccccCCCCCCCCCCCCC-CCchhHHHHHHHcCCHHHHHHHH--------hcCCCCCCCCCCCC
Q 022605           36 DPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPEN-LDSTMQLLFMACRGDVKGVEDLL--------NEGSDVNSIDLDGR  106 (294)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~Aa~~g~~~~v~~Ll--------~~g~~~~~~~~~g~  106 (294)
                      ++.+.+.++.++. ++.+.+..+.. . .....+ ..|.||||+||..|+.++|++|+        +.|+++|.+|..|.
T Consensus        91 ~~~g~t~L~~Aa~-~~~~~~~~L~~-~-~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~  167 (373)
T 2fo1_E           91 EPESPIKLHTEAA-GSYAITEPITR-E-SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN  167 (373)
T ss_dssp             ---CCCHHHHHHH-SSSCCCSCCST-T-TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSC
T ss_pred             CCCCccHHHHHhc-CCchHHHHhcc-c-cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence            4445555665555 55555555543 2 333444 78999999999999998888776        78999999999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCC---CCCCCCccccCCC--
Q 022605          107 TALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG---AKVP---KTKRTPMTVANPR--  178 (294)
Q Consensus       107 TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~~~---~~~~t~l~~a~~~--  178 (294)
                      ||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.|   ++++   ..|.||||+|+..  
T Consensus       168 TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~  247 (373)
T 2fo1_E          168 TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG  247 (373)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCS
T ss_pred             CHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999987   6664   4499999999654  


Q ss_pred             ----CCcccccCcchhhhh--------cccCCCCCceeeeeecCchhhhHhhhccC-CCChHhhhhhhhHHHHHHHcCCC
Q 022605          179 ----EVPEYELNPLELQVR--------KADGITKGSYQVAKWNGTKVWVKILDKES-HKDPERINAFTHELTIVEKARHP  245 (294)
Q Consensus       179 ----~~~~~l~~~~~~~~~--------~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~  245 (294)
                          +++++|+..+ .+++        ..+..|.||||+|+..|+.++|++|++.+ ......+..|.||||+|+..|+.
T Consensus       248 ~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~  326 (373)
T 2fo1_E          248 RDQVASAKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI  326 (373)
T ss_dssp             TTHHHHHHHHHHHT-CCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             cchHHHHHHHHHCC-CCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCH
Confidence                3456666554 2222        24567899999999999999999999876 55556677899999999999999


Q ss_pred             chhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccccccccC
Q 022605          246 NVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       246 ~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~~  289 (294)
                      ++|++|...+.+        ....+..|.|||++|+.+++..++
T Consensus       327 ~iv~~Ll~~gad--------~~~~d~~g~t~l~~A~~~g~~~iv  362 (373)
T 2fo1_E          327 EVVMYLIQQGAS--------VEAVDATDHTARQLAQANNHHNIV  362 (373)
T ss_dssp             HHHHHHHHTTCC--------SSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCCC--------ccCCCCCCCCHHHHHHHcCCHHHH
Confidence            999999999876        444677889999999999987654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.1e-38  Score=284.26  Aligned_cols=243  Identities=17%  Similarity=0.142  Sum_probs=176.9

Q ss_pred             CCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc
Q 022605           38 RRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGH  117 (294)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~  117 (294)
                      .+.+.++.++..++.+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus       112 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  191 (437)
T 1n11_A          112 AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN  191 (437)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            34455555555666666666665555555556667777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchhh
Q 022605          118 VEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLELQ  191 (294)
Q Consensus       118 ~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~~  191 (294)
                      .+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..   +++++|+..+ .+
T Consensus       192 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~  270 (437)
T 1n11_A          192 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ-AN  270 (437)
T ss_dssp             HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CC
T ss_pred             HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC-CC
Confidence            77777777777777777777777777777777777777777777766543   77777777554   3455666543 45


Q ss_pred             hhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCC
Q 022605          192 VRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVS  271 (294)
Q Consensus       192 ~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~  271 (294)
                      .+..+..|.||||+|+..|+.+++++|++.+......+..|.||||+|+..|+.++|++|...+.+        ....+.
T Consensus       271 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad--------~n~~~~  342 (437)
T 1n11_A          271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD--------VNAKTK  342 (437)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC--------TTCCCT
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCC--------CCCCCC
Confidence            556677788888888888888888888888877766777888999999999999999999888876        345677


Q ss_pred             CCcccccccccccccccC
Q 022605          272 MPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       272 l~~t~l~~a~~n~~~~~~  289 (294)
                      .|.||||+|+.+++..++
T Consensus       343 ~g~t~L~~A~~~g~~~iv  360 (437)
T 1n11_A          343 LGYSPLHQAAQQGHTDIV  360 (437)
T ss_dssp             TSCCHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHCChHHHH
Confidence            788999999998876543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.3e-37  Score=254.12  Aligned_cols=208  Identities=17%  Similarity=0.112  Sum_probs=185.6

Q ss_pred             CCCccccCCCCCCCCCCCC-CCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 022605           50 SSLDPIRRSPVQDELTVPE-NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK  128 (294)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g  128 (294)
                      ++.+.++.++..+...... +..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4566777888777766554 789999999999999999999999999999999999999999999999999999999998


Q ss_pred             C-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchhhhhcccCCCCC
Q 022605          129 A-NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLELQVRKADGITKG  201 (294)
Q Consensus       129 a-d~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t  201 (294)
                      + +++..+..|.||||+|+..|+.+++++|+++|++++..   |+||||+|+..   +++++|+..+ .+++..+..|.|
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t  160 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREET  160 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCC
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCcC
Confidence            7 89999999999999999999999999999999998644   99999999765   4567777653 677778889999


Q ss_pred             ceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCC
Q 022605          202 SYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI  258 (294)
Q Consensus       202 ~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~  258 (294)
                      |||+|+..|+.+++++|++.++.....+..|.||+++|++.++.+++++|...+...
T Consensus       161 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            999999999999999999999887777788999999999999999999999887654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-37  Score=276.59  Aligned_cols=220  Identities=19%  Similarity=0.160  Sum_probs=199.5

Q ss_pred             CCCCccccccCCCCCccccCCC--------CCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 022605           38 RRNNMRFSFGRQSSLDPIRRSP--------VQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTAL  109 (294)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpL  109 (294)
                      .+.+.++.++..++.+.++.++        ..+...+..|..|.||||+|+..|+.++|++|+++|++++.+|..|.|||
T Consensus       124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L  203 (373)
T 2fo1_E          124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  203 (373)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHH
Confidence            4667777788888888888776        56777788899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhCC---CCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHHCCCCCCC-----------CCCCCc
Q 022605          110 HIAACEGHVEVVKLLLSKK---ANIDARDRWGSTAAADAKYYG---NVEVYNILKARGAKVPK-----------TKRTPM  172 (294)
Q Consensus       110 h~A~~~g~~~~v~~Ll~~g---ad~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~ga~~~~-----------~~~t~l  172 (294)
                      |+|+..|+.+++++|+++|   ++++..|..|.||||+|+..+   +.+++++|+++|++++.           .|.|||
T Consensus       204 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~L  283 (373)
T 2fo1_E          204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  283 (373)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             HHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHH
Confidence            9999999999999999998   899999999999999999998   89999999999999875           599999


Q ss_pred             cccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhh
Q 022605          173 TVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQ  249 (294)
Q Consensus       173 ~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~  249 (294)
                      |+|+..   +++++|+..+..+++..+..|.||||+|+..|+.++|++|++.|++....+..|.||+++|+..|+.+|++
T Consensus       284 h~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~  363 (373)
T 2fo1_E          284 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD  363 (373)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHH
Confidence            999776   46677887666788888999999999999999999999999999888888889999999999999999999


Q ss_pred             hhhhhcCC
Q 022605          250 FVGAVTQN  257 (294)
Q Consensus       250 ~L~~~~~~  257 (294)
                      +|...+++
T Consensus       364 ~Ll~~~a~  371 (373)
T 2fo1_E          364 IFDRCRPE  371 (373)
T ss_dssp             HHHTTC--
T ss_pred             HHHhcCcc
Confidence            99888765

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4e-36  Score=238.38  Aligned_cols=157  Identities=34%  Similarity=0.404  Sum_probs=146.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 022605           74 MQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEV  153 (294)
Q Consensus        74 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~  153 (294)
                      ++|+.||..|+.++|++||++|+|+|.+|..|+||||+|+..++.+++++|+++|+|++.+|..|+||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhh
Q 022605          154 YNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFT  233 (294)
Q Consensus       154 v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  233 (294)
                      +++|+++|+++|..                            +..|.||||+|+..|+.++|++|++.+++....+..|+
T Consensus        86 v~~Ll~~gadvn~~----------------------------d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~  137 (169)
T 4gpm_A           86 VKLLISKGADVNAK----------------------------DSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGR  137 (169)
T ss_dssp             HHHHHHTTCCTTCC----------------------------CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             HHHHHHCcCCCCCC----------------------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence            99999999987543                            55788999999999999999999999988888888999


Q ss_pred             hHHHHHHHcCCCchhhhhhhhcCCC
Q 022605          234 HELTIVEKARHPNVVQFVGAVTQNI  258 (294)
Q Consensus       234 t~l~~a~~~~~~~iv~~L~~~~~~~  258 (294)
                      ||+++|++.|+.+++++|...+++.
T Consensus       138 TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          138 TPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTC----
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            9999999999999999999999874

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.9e-36  Score=251.54  Aligned_cols=206  Identities=20%  Similarity=0.182  Sum_probs=118.8

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 022605           72 STMQLLFMACRGDVKGVEDLLNEGS-DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  150 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  150 (294)
                      +.+|||.|+..|+.+++++|++.+. .++.+|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            3444555555555555555544432 234444445555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCC
Q 022605          151 VEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHK  224 (294)
Q Consensus       151 ~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~  224 (294)
                      .+++++|+++|++++..   |.||||+|+..   +++++|+..+ .+++..+..|.||||.|+..|+.+++++|++.+..
T Consensus        86 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  164 (231)
T 3aji_A           86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS  164 (231)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence            55555555555444322   44555554332   2233333222 23344455677788888888888888888877776


Q ss_pred             ChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccccccc
Q 022605          225 DPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQT  286 (294)
Q Consensus       225 ~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~  286 (294)
                      ....+..|.||+|+|+..++.+++++|...+.++        ...+..|.|||++|..+++.
T Consensus       165 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~--------~~~~~~g~t~l~~A~~~~~~  218 (231)
T 3aji_A          165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI--------YIENKEEKTPLQVAKGGLGL  218 (231)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS--------CCCCTTSCCHHHHSCHHHHH
T ss_pred             ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC--------CCCCCCCCCHHHHHHhhHHH
Confidence            6666667778888888888888888887777653        34566777888888766554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.7e-36  Score=251.28  Aligned_cols=205  Identities=20%  Similarity=0.114  Sum_probs=167.2

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCcHHHHHHHcCcHHHHHHHHhCC--CCCCC-CCCCCCCHHHHHHH
Q 022605           72 STMQLLFMACRGDVKGVEDLLNEGSDVN-SIDLDGRTALHIAACEGHVEVVKLLLSKK--ANIDA-RDRWGSTAAADAKY  147 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g--ad~~~-~~~~g~t~L~~A~~  147 (294)
                      |.||||+|+..|+.++|++|++.|.++. .+|..|.||||+|+..|+.+++++|+++|  ++++. .+..|+||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            6788888888888888888888887654 47888888888888888888888888888  55555 67888888888888


Q ss_pred             cCCHHHHHHHHHCC--CCCCC---CCCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhh
Q 022605          148 YGNVEVYNILKARG--AKVPK---TKRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILD  219 (294)
Q Consensus       148 ~g~~~~v~~Ll~~g--a~~~~---~~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll  219 (294)
                      .|+.+++++|+++|  ++++.   .|.||||+|+..   +++++|+..+ .+++..+..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            88888888888888  66543   388888888654   4556666553 566777888999999999999999999999


Q ss_pred             ccC-CCChHhhhhhhhHHHHHHHcCCCchhhhhh-hhcCCCCeEEEEecCCCCCCCcccccccccccc
Q 022605          220 KES-HKDPERINAFTHELTIVEKARHPNVVQFVG-AVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQ  285 (294)
Q Consensus       220 ~~~-~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~-~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~  285 (294)
                      +.+ ......+..|.||+|+|+..++.+++++|. ..+.++        ...+..|.|||++|..++.
T Consensus       161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~--------~~~~~~g~t~l~~A~~~~~  220 (228)
T 2dzn_A          161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY--------DLVDNKGAKAEDVALNEQV  220 (228)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS--------CCBCTTSCBGGGGCSSTTH
T ss_pred             hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC--------CccCCCCCcHHHHHHHHHH
Confidence            998 555566778999999999999999999999 778764        4467788999999987653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.9e-37  Score=275.01  Aligned_cols=212  Identities=12%  Similarity=0.018  Sum_probs=160.6

Q ss_pred             CCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 022605           66 VPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA  145 (294)
Q Consensus        66 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A  145 (294)
                      ...|..|.||||+||..|+.++|++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++.  ..|+||||+|
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A   91 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLA   91 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHH
Confidence            34566788888888888888888888888888888888888888888888888888888888885543  4678888888


Q ss_pred             HHcCCHHHHHHHHHC----CCCCCC--------------------CCCCCccccCCCC-----CcccccCcchhhhhccc
Q 022605          146 KYYGNVEVYNILKAR----GAKVPK--------------------TKRTPMTVANPRE-----VPEYELNPLELQVRKAD  196 (294)
Q Consensus       146 ~~~g~~~~v~~Ll~~----ga~~~~--------------------~~~t~l~~a~~~~-----~~~~l~~~~~~~~~~~~  196 (294)
                      +..|+.+++++|++.    |++++.                    .|.||||+|+..+     ++++|+..+ .+++..+
T Consensus        92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g-a~~~~~d  170 (364)
T 3ljn_A           92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG-ASPTAKD  170 (364)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT-CCTTCCC
T ss_pred             HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC-CCCcccC
Confidence            888888888888887    666543                    3788888885543     456666553 5666677


Q ss_pred             CCCCCceeeeeecCchhhhHhhhccCCC-----ChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCC
Q 022605          197 GITKGSYQVAKWNGTKVWVKILDKESHK-----DPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVS  271 (294)
Q Consensus       197 ~~~~t~l~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~  271 (294)
                      ..|.||||+|+..|+.++|++|++.+..     ....+..|.||||+|+..|+.+++++|+..+.+.        ...+.
T Consensus       171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~--------~~~d~  242 (364)
T 3ljn_A          171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV--------NMEDN  242 (364)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT--------TCCCT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--------CCCCC
Confidence            7788888888888888888888877766     5555667788888888888888888888777653        34567


Q ss_pred             CCccccccccccccccc
Q 022605          272 MPITPFLTLSFHKQTHT  288 (294)
Q Consensus       272 l~~t~l~~a~~n~~~~~  288 (294)
                      .|.||||+|+.+++..+
T Consensus       243 ~g~tpL~~A~~~g~~~~  259 (364)
T 3ljn_A          243 EHTVPLYLSVRAAMVLL  259 (364)
T ss_dssp             TSCCHHHHHHHTCCHHH
T ss_pred             CCCCHHHHHHHhChHHH
Confidence            77888888888877654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1e-37  Score=260.61  Aligned_cols=222  Identities=18%  Similarity=0.107  Sum_probs=194.5

Q ss_pred             CCCCCCCCccccccCCCCCccccCCCC----CCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 022605           34 SFDPRRNNMRFSFGRQSSLDPIRRSPV----QDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTAL  109 (294)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpL  109 (294)
                      ..+..+.+.++.++..++.+.++.++.    .+......+..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   83 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA   83 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            345677888888999999988888775    5667777889999999999999999999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCCccccCCC---
Q 022605          110 HIAACEGHVEVVKLLLSKKA----NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPK----TKRTPMTVANPR---  178 (294)
Q Consensus       110 h~A~~~g~~~~v~~Ll~~ga----d~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~----~~~t~l~~a~~~---  178 (294)
                      |+|+..|+.+++++|+++++    +++..+..|.||||+|+..|+.+++++|++.|++++.    .|.||||+|+..   
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~  163 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  163 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence            99999999999999999988    8999999999999999999999999999999999863    489999999665   


Q ss_pred             CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcC
Q 022605          179 EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ  256 (294)
Q Consensus       179 ~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~  256 (294)
                      +++++|+..+ .+++..+..|.||||+|+..|+.+++++|++.|++....+..|.||+++|+..++.++++.|....+
T Consensus       164 ~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          164 SMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             HHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            5667777654 6777888899999999999999999999999998887788899999999999999999999976543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.5e-36  Score=256.04  Aligned_cols=223  Identities=22%  Similarity=0.183  Sum_probs=198.3

Q ss_pred             CCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 022605           36 DPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACE  115 (294)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~  115 (294)
                      +..+.+.++.++..++.+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  115 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  115 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh
Confidence            34456777888888999999999998888888899999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhCCCCCCCC----------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC---CCCCccccCCCC--
Q 022605          116 GHVEVVKLLLSKKANIDAR----------DRWGSTAAADAKYYGNVEVYNILKAR-GAKVPKT---KRTPMTVANPRE--  179 (294)
Q Consensus       116 g~~~~v~~Ll~~gad~~~~----------~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~---~~t~l~~a~~~~--  179 (294)
                      |+.+++++|+++|++++..          +..|.||||+|+..|+.+++++|++. |++++..   |.||||+|+..+  
T Consensus       116 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  195 (285)
T 1wdy_A          116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD  195 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred             CCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc
Confidence            9999999999999999987          78899999999999999999999987 9998654   999999995443  


Q ss_pred             -----CcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhc-cCCCChHhhhhhhhHHHHHHHcCCCchhhhhhh
Q 022605          180 -----VPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK-ESHKDPERINAFTHELTIVEKARHPNVVQFVGA  253 (294)
Q Consensus       180 -----~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~  253 (294)
                           ++++|+..+ .+++..+..|.||||+|+..|+.+++++|++ .+......+..|.||+|+|++.++.+++++|..
T Consensus       196 ~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~  274 (285)
T 1wdy_A          196 SDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK  274 (285)
T ss_dssp             TTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHH
Confidence                 345565543 5677778889999999999999999999998 666666677889999999999999999999999


Q ss_pred             hcCCCC
Q 022605          254 VTQNIP  259 (294)
Q Consensus       254 ~~~~~~  259 (294)
                      .++++.
T Consensus       275 ~Ga~~~  280 (285)
T 1wdy_A          275 RGASTD  280 (285)
T ss_dssp             HSSCSC
T ss_pred             cCCCCC
Confidence            998863

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=8.6e-38  Score=277.27  Aligned_cols=250  Identities=15%  Similarity=0.053  Sum_probs=212.2

Q ss_pred             CCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 022605           35 FDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAAC  114 (294)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~  114 (294)
                      .+..+.+.++.++..++.+.++.++..+......+..|.||||+||..|+.++|++|+++|++++.  .+|.||||+|+.
T Consensus        16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~   93 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVM   93 (364)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHH
Confidence            345567788888999999999999999888888999999999999999999999999999997664  579999999999


Q ss_pred             cCcHHHHHHHHhC----CCCCCC-----------------CCCCCCCHHHHHHHcC--CHHHHHHHHHCCCCCCCC---C
Q 022605          115 EGHVEVVKLLLSK----KANIDA-----------------RDRWGSTAAADAKYYG--NVEVYNILKARGAKVPKT---K  168 (294)
Q Consensus       115 ~g~~~~v~~Ll~~----gad~~~-----------------~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~~---~  168 (294)
                      .|+.++|++|+++    |++++.                 .|..|.||||+|+..|  +.+++++|+++|++++..   |
T Consensus        94 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g  173 (364)
T 3ljn_A           94 ANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKAD  173 (364)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTS
T ss_pred             cCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCC
Confidence            9999999999999    888877                 8889999999999999  999999999999998654   9


Q ss_pred             CCCccccCCC---CCcccccCcc----hhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHH
Q 022605          169 RTPMTVANPR---EVPEYELNPL----ELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEK  241 (294)
Q Consensus       169 ~t~l~~a~~~---~~~~~l~~~~----~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~  241 (294)
                      +||||+|+..   +++++|+..+    ..+++..+..|.||||+|+..|+.++|++|++.|++....+..|.|||++|+.
T Consensus       174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~  253 (364)
T 3ljn_A          174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVR  253 (364)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            9999999765   5567777644    12377788899999999999999999999999998888888899999999999


Q ss_pred             cCCCchhhhhhhhcCCCCeEE----EEecCCCCCCCccccccccccccc
Q 022605          242 ARHPNVVQFVGAVTQNIPMMI----VLEYHAKVSMPITPFLTLSFHKQT  286 (294)
Q Consensus       242 ~~~~~iv~~L~~~~~~~~l~~----~~e~~~~g~l~~t~l~~a~~n~~~  286 (294)
                      .|+.+++++|+..+++....-    -.........+.|||++|+.+++.
T Consensus       254 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~  302 (364)
T 3ljn_A          254 AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK  302 (364)
T ss_dssp             TCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHH
T ss_pred             hChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCH
Confidence            999999999998865421000    001112455678999999988754

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=246.67  Aligned_cols=224  Identities=16%  Similarity=0.121  Sum_probs=197.1

Q ss_pred             CCCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHH
Q 022605           34 SFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSID-LDGRTALHIA  112 (294)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~g~TpLh~A  112 (294)
                      .+++.....++.++..++.+.++.++..+......+..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            455667778888999999999999999888888889999999999999999999999999999988655 5599999999


Q ss_pred             HHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCC----CCCccccc
Q 022605          113 ACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANP----REVPEYEL  185 (294)
Q Consensus       113 ~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~----~~~~~~l~  185 (294)
                      +..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+.    .+++++++
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~  163 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL  163 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998654   9999999963    34556665


Q ss_pred             CcchhhhhcccC-CCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCC
Q 022605          186 NPLELQVRKADG-ITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI  258 (294)
Q Consensus       186 ~~~~~~~~~~~~-~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~  258 (294)
                      ..+ .+++..+. .|.||||+|+..|+.+++++|++.+.+....+..|.||+++|++.++.+++++|...++..
T Consensus       164 ~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          164 TFN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HTT-CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             hcC-CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            544 55666665 7889999999999999999999999888777888999999999999999999999887754

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=8.9e-36  Score=247.79  Aligned_cols=187  Identities=22%  Similarity=0.212  Sum_probs=167.8

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC-----CCCCCCCCCHHHH
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI-----DARDRWGSTAAAD  144 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~-----~~~~~~g~t~L~~  144 (294)
                      .|.||||+|+..|+.++|++|++. |++++.+|..|+||||+|+..|+.+++++|+++|+++     +..|..|+||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            488999999999999999999998 9999999999999999999999999999999999987     6778899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCC----------------CCCCCccccCCC---CCcccccCcchhhhhcccCCCCCceee
Q 022605          145 AKYYGNVEVYNILKARGAKVPK----------------TKRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQV  205 (294)
Q Consensus       145 A~~~g~~~~v~~Ll~~ga~~~~----------------~~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~  205 (294)
                      |+..|+.+++++|+++|++++.                .|+||||+|+..   +++++|+..+ .+++..+..|.||||+
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~  160 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADIRAQDSLGNTVLHI  160 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHH
Confidence            9999999999999999999865                489999999654   5677787654 6778888999999999


Q ss_pred             eeecCchhhh----HhhhccCCCC------hHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCC
Q 022605          206 AKWNGTKVWV----KILDKESHKD------PERINAFTHELTIVEKARHPNVVQFVGAVTQNI  258 (294)
Q Consensus       206 A~~~g~~~~v----~~Ll~~~~~~------~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~  258 (294)
                      |+..|+.+++    ++|++.++..      ...+..|.||+++|++.|+.+++++|...+...
T Consensus       161 A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          161 LILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI  223 (232)
T ss_dssp             HHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            9999999988    9999888766      356678999999999999999999999887653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-37  Score=265.38  Aligned_cols=209  Identities=18%  Similarity=0.142  Sum_probs=152.7

Q ss_pred             CCccccccCCCCCccccCCCCCCCC--------CCCCCCCchhHHHHHHHcCCHH-HHHHHHhcCCCCCCCCCCCCcHHH
Q 022605           40 NNMRFSFGRQSSLDPIRRSPVQDEL--------TVPENLDSTMQLLFMACRGDVK-GVEDLLNEGSDVNSIDLDGRTALH  110 (294)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~t~L~~Aa~~g~~~-~v~~Ll~~g~~~~~~~~~g~TpLh  110 (294)
                      .+.++.++..|+.+.++.+++.+..        ....+..+.||||+|+..+..+ ++++|++.|+++|.+|.+|+||||
T Consensus        12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh   91 (269)
T 4b93_B           12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLH   91 (269)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            3467788888888888887766543        2345667889999999877664 788899999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccc
Q 022605          111 IAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYE  184 (294)
Q Consensus       111 ~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l  184 (294)
                      +||..|+.++|++|++.|++++..+..|.||+|+|+..++.+++++|++.|++++..   |+||||+|+..   +++++|
T Consensus        92 ~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L  171 (269)
T 4b93_B           92 VAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL  171 (269)
T ss_dssp             HHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHH
T ss_pred             HHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988654   89999999654   566777


Q ss_pred             cCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhh
Q 022605          185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFV  251 (294)
Q Consensus       185 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L  251 (294)
                      +..+ .+++..+..|.||||+|+..|+.++|++|++.|++....+..|+||+|+|+++++  |+++|
T Consensus       172 l~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~--i~~lL  235 (269)
T 4b93_B          172 LQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK--IMELL  235 (269)
T ss_dssp             HHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred             HHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence            7654 6777788899999999999999999999999998888888899999999987664  55554

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=5.7e-36  Score=249.64  Aligned_cols=218  Identities=17%  Similarity=0.153  Sum_probs=196.7

Q ss_pred             CCCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 022605           34 SFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAA  113 (294)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~  113 (294)
                      ..+..+.+.++.++..++.+.++.++..+......+..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+
T Consensus         6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   85 (237)
T 3b7b_A            6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAA   85 (237)
T ss_dssp             CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Confidence            34556778888888899999999999988888888999999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccC
Q 022605          114 CEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELN  186 (294)
Q Consensus       114 ~~g~~~~v~~Ll~~g-ad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~  186 (294)
                      ..|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..   +++++|+.
T Consensus        86 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  165 (237)
T 3b7b_A           86 KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA  165 (237)
T ss_dssp             HTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT
T ss_pred             HcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            999999999999998 899999999999999999999999999999999998654   99999999654   56777777


Q ss_pred             cchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhh
Q 022605          187 PLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG  252 (294)
Q Consensus       187 ~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~  252 (294)
                      .+ .+++..+..|.||||+|+..|+.+++++|++.+++....+..|.||+++|+..++.+.+..+.
T Consensus       166 ~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          166 AK-CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             TT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             cC-CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            65 667777888999999999999999999999999888888889999999999999876555543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.3e-36  Score=265.40  Aligned_cols=237  Identities=19%  Similarity=0.116  Sum_probs=199.6

Q ss_pred             CCCccccccCCCCCccccCCCCCCCCCCCCCC-CchhHHHHHHHcCCHHHHHHHHhcCCCCC------------------
Q 022605           39 RNNMRFSFGRQSSLDPIRRSPVQDELTVPENL-DSTMQLLFMACRGDVKGVEDLLNEGSDVN------------------   99 (294)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~------------------   99 (294)
                      ..+.++.++..++++.++.+++.+...+..+. .|.||||+||..|+.++|++||++|++++                  
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  104 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGS  104 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhccc
Confidence            45678889999999999999998887776654 59999999999999999999999987654                  


Q ss_pred             ---------------CCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCC----------CCCCCCHHHHHHHcCCHHHH
Q 022605          100 ---------------SIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR----------DRWGSTAAADAKYYGNVEVY  154 (294)
Q Consensus       100 ---------------~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~----------~~~g~t~L~~A~~~g~~~~v  154 (294)
                                     .+|..|.||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.++|
T Consensus       105 ~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v  184 (337)
T 4g8k_A          105 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  184 (337)
T ss_dssp             HHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHH
T ss_pred             chhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHH
Confidence                           45678899999999999999999999999998754          45689999999999999999


Q ss_pred             HHHHH-CCCCCCCC---CCCCccccC---CC----CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhcc-C
Q 022605          155 NILKA-RGAKVPKT---KRTPMTVAN---PR----EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKE-S  222 (294)
Q Consensus       155 ~~Ll~-~ga~~~~~---~~t~l~~a~---~~----~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-~  222 (294)
                      ++|++ .|++++..   |.|+++.++   ..    .++++|+..+ .+++..+..|.||||+|+..|+.++|++|+.. +
T Consensus       185 ~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g-ad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~  263 (337)
T 4g8k_A          185 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  263 (337)
T ss_dssp             HHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT
T ss_pred             HHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC
Confidence            99995 69998654   889998752   22    2455666544 66777888899999999999999999999975 4


Q ss_pred             CCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccccccccC
Q 022605          223 HKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       223 ~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~~  289 (294)
                      ......+..|+||||+|++.|+.++|++|+..+++++             ..+|||+|+.+++..++
T Consensus       264 ~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n-------------~~~~L~~A~~~~~~~iv  317 (337)
T 4g8k_A          264 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD-------------CGDLVMTARRNYDHSLV  317 (337)
T ss_dssp             CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST-------------TCCHHHHHHHTTCHHHH
T ss_pred             CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-------------CCCHHHHHHHcCCHHHH
Confidence            5555667789999999999999999999999988752             23699999999987654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.6e-36  Score=257.66  Aligned_cols=209  Identities=18%  Similarity=0.100  Sum_probs=175.9

Q ss_pred             CCCCCCCCccccccCCCCCccccCCCCCCCC---CCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 022605           34 SFDPRRNNMRFSFGRQSSLDPIRRSPVQDEL---TVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALH  110 (294)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh  110 (294)
                      ..+..+.++++.++..++.+.++.++..+..   ....+..|.||||+||..|+.++|++|+++|++++.+|..|.||||
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~   83 (282)
T 1oy3_D            4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (282)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            3566788888999999999999988876655   5677889999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhCCCC-----------------------------------------------CCCCCCCCCCHHH
Q 022605          111 IAACEGHVEVVKLLLSKKAN-----------------------------------------------IDARDRWGSTAAA  143 (294)
Q Consensus       111 ~A~~~g~~~~v~~Ll~~gad-----------------------------------------------~~~~~~~g~t~L~  143 (294)
                      +|+..|+.+++++|+++|++                                               ++..+..|.||||
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  163 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence            99999999999999998865                                               6778899999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCC----CCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhH
Q 022605          144 DAKYYGNVEVYNILKARGAKVPKT----KRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVK  216 (294)
Q Consensus       144 ~A~~~g~~~~v~~Ll~~ga~~~~~----~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~  216 (294)
                      +|+..|+.+++++|+++|++++..    |+||||+|+..   +++++|+..+ .+++..+..|.||||+|+..|+.++++
T Consensus       164 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~  242 (282)
T 1oy3_D          164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILAR  242 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCCcHHHH
Confidence            999999999999999999998653    89999999765   5677777664 677888899999999999999999999


Q ss_pred             hhhccCCCChHhhhhhhhHHHHHHHcC
Q 022605          217 ILDKESHKDPERINAFTHELTIVEKAR  243 (294)
Q Consensus       217 ~Ll~~~~~~~~~~~~~~t~l~~a~~~~  243 (294)
                      +|++.|+.....+..|.||+++|....
T Consensus       243 ~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          243 LLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHTTCCCCCCC--------------
T ss_pred             HHHHcCCCcCcCCCcccccccccCCcc
Confidence            999999999888999999999987764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=9.8e-37  Score=262.03  Aligned_cols=203  Identities=17%  Similarity=0.126  Sum_probs=170.1

Q ss_pred             CCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 022605           50 SSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA  129 (294)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga  129 (294)
                      .+...+..++... .....|..|.||||+|+..|+.++|++|+++|++++.+  +|+||||+|+..|+.+++++|+++|+
T Consensus        10 ~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga   86 (285)
T 3kea_A           10 WKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGL   86 (285)
T ss_dssp             CCHHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            3344444444443 35667888999999999999999999999999999887  48999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---C-CCCccccCCC---CCcccccCcchhhhhccc-CCCCC
Q 022605          130 NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---K-RTPMTVANPR---EVPEYELNPLELQVRKAD-GITKG  201 (294)
Q Consensus       130 d~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~-~t~l~~a~~~---~~~~~l~~~~~~~~~~~~-~~~~t  201 (294)
                      +++..|..|+||||+|+..|+.+++++|+++|++++..   | .||||+|+..   +++++|+..+...   .+ ..|.|
T Consensus        87 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t  163 (285)
T 3kea_A           87 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLS  163 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHH
T ss_pred             CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCcc
Confidence            99999999999999999999999999999999998644   6 7999999665   4567777665222   22 26789


Q ss_pred             ceeeeeecCchhhhHhhhccCCCChHhhhhhhhH-HHHHHHcCCCchhhhhhhhcCCC
Q 022605          202 SYQVAKWNGTKVWVKILDKESHKDPERINAFTHE-LTIVEKARHPNVVQFVGAVTQNI  258 (294)
Q Consensus       202 ~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~-l~~a~~~~~~~iv~~L~~~~~~~  258 (294)
                      |||+|+..|+.+++++|++.|++....+..|.|| +|+|+..++.+++++|...+.++
T Consensus       164 ~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~  221 (285)
T 3kea_A          164 CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI  221 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCS
T ss_pred             HHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999998888777777788887 99999999999999999888775

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.3e-36  Score=258.67  Aligned_cols=215  Identities=17%  Similarity=0.106  Sum_probs=192.4

Q ss_pred             CCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 022605           35 FDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAAC  114 (294)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~  114 (294)
                      .+..+.+.++.++..++.+.++.++..+......+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.
T Consensus        55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~  134 (285)
T 3d9h_A           55 DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV  134 (285)
T ss_dssp             SSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH
T ss_pred             CCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            44556778888888999999999999888888889999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcc
Q 022605          115 EGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPL  188 (294)
Q Consensus       115 ~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~  188 (294)
                      .|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++..   |+||||+|+..   +++++|+..+
T Consensus       135 ~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  213 (285)
T 3d9h_A          135 SGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG  213 (285)
T ss_dssp             HTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCC
Confidence            999999999999999998654 5999999999999999999999999998654   99999999765   5667777654


Q ss_pred             hhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhh
Q 022605          189 ELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAV  254 (294)
Q Consensus       189 ~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~  254 (294)
                       .+++ .+..|.||||+|+..|+.+++++|++.+++....+..|.||+++|+  ++.+++++|...
T Consensus       214 -a~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~  275 (285)
T 3d9h_A          214 -ADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLER  275 (285)
T ss_dssp             -CCTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred             -CCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence             3444 3677899999999999999999999999888888889999999998  568999999887

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4.3e-35  Score=244.49  Aligned_cols=219  Identities=16%  Similarity=0.060  Sum_probs=176.0

Q ss_pred             CCCCCCCccccccCCCCCccccCCCCCCC----CCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 022605           35 FDPRRNNMRFSFGRQSSLDPIRRSPVQDE----LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALH  110 (294)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh  110 (294)
                      .+..+.+.++.++..++.+.++.++....    .....+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   83 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH   83 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            45667778888888888888888877654    45667788999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccc
Q 022605          111 IAACEGHVEVVKLLLSKKAN------IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYE  184 (294)
Q Consensus       111 ~A~~~g~~~~v~~Ll~~gad------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l  184 (294)
                      +|+..|+.+++++|+++|++      ++..+..|.||||+|+..|+.+++++|+++|++++..                 
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-----------------  146 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ-----------------  146 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-----------------
T ss_pred             HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-----------------
Confidence            99999999999999998876      4667788999999999999999999999988877543                 


Q ss_pred             cCcchhhhhcccC-CCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEE
Q 022605          185 LNPLELQVRKADG-ITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIV  263 (294)
Q Consensus       185 ~~~~~~~~~~~~~-~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~  263 (294)
                                 +. .|.||||+|+..|+.++|++|++.|++....+..|.||+++|+..++.+++++|...++++.    
T Consensus       147 -----------~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~----  211 (236)
T 1ikn_D          147 -----------EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL----  211 (236)
T ss_dssp             -----------CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG----
T ss_pred             -----------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh----
Confidence                       33 67899999999999999999999988887788889999999999999999999999988641    


Q ss_pred             EecCCCCCCCcccccccccccccc
Q 022605          264 LEYHAKVSMPITPFLTLSFHKQTH  287 (294)
Q Consensus       264 ~e~~~~g~l~~t~l~~a~~n~~~~  287 (294)
                        .......+.||+..++......
T Consensus       212 --~~~~~~~~~~~~~~~~~~~~~~  233 (236)
T 1ikn_D          212 --QMLPESEDEESYDTESEFTEFT  233 (236)
T ss_dssp             --SSCCCCCTTTCCCCC-------
T ss_pred             --hcCCccchHHHHhhhccccccc
Confidence              1235666788888887665443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=7.4e-35  Score=236.87  Aligned_cols=186  Identities=16%  Similarity=0.185  Sum_probs=164.0

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 022605           70 LDSTMQLLFMACRGDVKGVEDLLNEGS-DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY  148 (294)
Q Consensus        70 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~  148 (294)
                      ..+.||||.||..|+.++|+.|++.+. +++.+|..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            457889999999999999999998875 8999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHH-HCCCCCCCC---CCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCc-----hhhhH
Q 022605          149 GNVEVYNILK-ARGAKVPKT---KRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGT-----KVWVK  216 (294)
Q Consensus       149 g~~~~v~~Ll-~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~-----~~~v~  216 (294)
                      |+.+++++|+ ..+++++..   |.||||+|+..   +++++|+..+..+++..+..|.||||+|+..++     .++++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            9999999999 556676543   88999999665   566777777667788888899999999999988     99999


Q ss_pred             hhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhc
Q 022605          217 ILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVT  255 (294)
Q Consensus       217 ~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~  255 (294)
                      +|++.|.+....+..|.||+++|++.|+.+++++|...+
T Consensus       163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999999888888889999999999999999999997643

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.4e-35  Score=243.93  Aligned_cols=214  Identities=18%  Similarity=0.081  Sum_probs=187.7

Q ss_pred             CCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCCCHHHHH
Q 022605           67 PENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD-RWGSTAAADA  145 (294)
Q Consensus        67 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~-~~g~t~L~~A  145 (294)
                      ..+..|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            457789999999999999999999999999999999999999999999999999999999999998665 4599999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCc-hhhhHhh
Q 022605          146 KYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGT-KVWVKIL  218 (294)
Q Consensus       146 ~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~-~~~v~~L  218 (294)
                      +..|+.+++++|++.|++++..   |.||||+|+..   +++++|+..+ .+++..+..|.||||.|+..++ .+++++|
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L  162 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTHSVDPTRLL  162 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCSSTTHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHhCChHHHHHHH
Confidence            9999999999999999998644   89999999765   4566676544 5677778889999999997776 8999999


Q ss_pred             hccCCCChHhhh-hhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccccccccC
Q 022605          219 DKESHKDPERIN-AFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       219 l~~~~~~~~~~~-~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~~  289 (294)
                      ++.+........ .|.||+|+|+..++.+++++|...+.++        ...+..|.|||++|+.+++..++
T Consensus       163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~t~l~~A~~~~~~~~v  226 (240)
T 3eu9_A          163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV--------DAQNIKGESALDLAKQRKNVWMI  226 (240)
T ss_dssp             HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT--------TCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC--------CCcCCCCCCHHHHHHHcCcHHHH
Confidence            988877766665 7889999999999999999999998764        44567789999999999987653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.1e-35  Score=246.40  Aligned_cols=211  Identities=18%  Similarity=0.073  Sum_probs=186.0

Q ss_pred             CCccccccCCCCCccccCCCCCCCCCCC-CCCCchhHHHHHHHcCCHHHHHHHHhcC--CCCCC-CCCCCCcHHHHHHHc
Q 022605           40 NNMRFSFGRQSSLDPIRRSPVQDELTVP-ENLDSTMQLLFMACRGDVKGVEDLLNEG--SDVNS-IDLDGRTALHIAACE  115 (294)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~-~~~~g~TpLh~A~~~  115 (294)
                      .++++.++..++.+.++.++..+..... .+..|.||||+|+..|+.+++++|+++|  .+++. ++..|.||||+|+..
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~   82 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   82 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc
Confidence            4556777788888888888877766544 7889999999999999999999999999  55555 788999999999999


Q ss_pred             CcHHHHHHHHhCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCc
Q 022605          116 GHVEVVKLLLSKK--ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNP  187 (294)
Q Consensus       116 g~~~~v~~Ll~~g--ad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~  187 (294)
                      |+.+++++|+++|  ++++..+..|.||||+|+..|+.+++++|+++|++++..   |+||||+|+..   +++++|+..
T Consensus        83 ~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  162 (228)
T 2dzn_A           83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  162 (228)
T ss_dssp             CCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999998  999999999999999999999999999999999998654   99999999754   567888887


Q ss_pred             chhhhhcccCCCCCceeeeeecCchhhhHhhh-ccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhh
Q 022605          188 LELQVRKADGITKGSYQVAKWNGTKVWVKILD-KESHKDPERINAFTHELTIVEKARHPNVVQFVGA  253 (294)
Q Consensus       188 ~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~  253 (294)
                      +..+++..+..|.||||+|+..|+.+++++|+ +.|++....+..|.||+++|..   .+++++|..
T Consensus       163 g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~---~~~~~~l~~  226 (228)
T 2dzn_A          163 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLN  226 (228)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS---TTHHHHHHT
T ss_pred             CcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH---HHHHHHHHh
Confidence            76788888999999999999999999999999 7888887888899999999964   477777754

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.9e-35  Score=258.55  Aligned_cols=236  Identities=21%  Similarity=0.120  Sum_probs=191.9

Q ss_pred             CCCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 022605           34 SFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAA  113 (294)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~  113 (294)
                      ..+..+.++++.++..++.+.++.++..+......+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+
T Consensus        53 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~  132 (351)
T 3utm_A           53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAA  132 (351)
T ss_dssp             CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            34456677888888899999999999998888889999999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhCCCCCCCCC------------------------------------------------------CCCC
Q 022605          114 CEGHVEVVKLLLSKKANIDARD------------------------------------------------------RWGS  139 (294)
Q Consensus       114 ~~g~~~~v~~Ll~~gad~~~~~------------------------------------------------------~~g~  139 (294)
                      ..|+.+++++|+++|++++..+                                                      ..|.
T Consensus       133 ~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  212 (351)
T 3utm_A          133 SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE  212 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCC
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCC
Confidence            9999999999999999988654                                                      4567


Q ss_pred             CHHHHHHHc---CCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecC
Q 022605          140 TAAADAKYY---GNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNG  210 (294)
Q Consensus       140 t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g  210 (294)
                      ||||+|+..   +..+++++|++.|++++..   |+||||+|+..   +++++|+..+ .+++..+..|.||||+|+..|
T Consensus       213 t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~t~L~~A~~~~  291 (351)
T 3utm_A          213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAG  291 (351)
T ss_dssp             CHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT
T ss_pred             CHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcC
Confidence            999999999   5589999999999998644   99999999765   5667777654 677788889999999999999


Q ss_pred             chhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccccc
Q 022605          211 TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQ  285 (294)
Q Consensus       211 ~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~  285 (294)
                      +.++|++|++.|++....+..|.||+++|    +.+++++|......           ....+.++|..|+.+|+
T Consensus       292 ~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~-----------~~~~~~~~l~~A~~~gd  351 (351)
T 3utm_A          292 HLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM-----------RTSDVDYRLLEASKAGD  351 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC-------------------------------
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc-----------ccCcceeehhhhhccCC
Confidence            99999999999998888888999999987    56888888765543           34455688888888764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4.1e-35  Score=244.60  Aligned_cols=192  Identities=14%  Similarity=0.080  Sum_probs=167.1

Q ss_pred             CCCCCchhHHHHHHHcCCHHHHHHHHhcCC----CCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHH
Q 022605           67 PENLDSTMQLLFMACRGDVKGVEDLLNEGS----DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA  142 (294)
Q Consensus        67 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~----~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L  142 (294)
                      ..|.+|.||||+|+..|+.+++++|++.+.    +++.+|..|.||||+|+..|+.++|++|+++|++++..|..|+|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            457789999999999999999999998764    7999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccC
Q 022605          143 ADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKES  222 (294)
Q Consensus       143 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~  222 (294)
                      |+|+..|+.+++++|++.|++++..                      ..+...+..|.||||+|+..|+.+++++|++.+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~----------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  140 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLH----------------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLG  140 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSS----------------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHH----------------------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999999998874321                      123555677899999999999999999999999


Q ss_pred             CCChHhhh-hhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccccccccc
Q 022605          223 HKDPERIN-AFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHT  288 (294)
Q Consensus       223 ~~~~~~~~-~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~  288 (294)
                      ......+. .|.||||+|+..++.+++++|...+.+.        ...+..|.|||++|+.+++..+
T Consensus       141 ~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~--------~~~~~~g~tpl~~A~~~~~~~~  199 (236)
T 1ikn_D          141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV--------NRVTYQGYSPYQLTWGRPSTRI  199 (236)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS--------CCCCTTCCCGGGGCTTSSCHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--------CcccCCCCCHHHHHHccCchHH
Confidence            87777766 8999999999999999999999998764        4467788999999999988654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.8e-34  Score=226.39  Aligned_cols=156  Identities=32%  Similarity=0.385  Sum_probs=144.7

Q ss_pred             ccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 022605           42 MRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVV  121 (294)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v  121 (294)
                      .++.++..|+.+.++.+++.+...+..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v   86 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV   86 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCC
Q 022605          122 KLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKG  201 (294)
Q Consensus       122 ~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t  201 (294)
                      ++|+++|+|+|.+|..|+||||+|+..|+.++|++|+++|++++..                            +..|.|
T Consensus        87 ~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~----------------------------d~~G~T  138 (169)
T 4gpm_A           87 KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS----------------------------DSDGRT  138 (169)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------------------------CTTSCC
T ss_pred             HHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc----------------------------CCCCCC
Confidence            9999999999999999999999999999999999999999987543                            567889


Q ss_pred             ceeeeeecCchhhhHhhhccCCCC
Q 022605          202 SYQVAKWNGTKVWVKILDKESHKD  225 (294)
Q Consensus       202 ~l~~A~~~g~~~~v~~Ll~~~~~~  225 (294)
                      |||+|+..|+.+++++|++.|+..
T Consensus       139 pL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          139 PLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHTC----
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCc
Confidence            999999999999999999988754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=4.1e-35  Score=247.55  Aligned_cols=186  Identities=15%  Similarity=0.092  Sum_probs=144.5

Q ss_pred             chhHHHHHHHcCCHH----HHHHHHhcCCCCCC----CCCCCCcHHHHHHHc---CcHHHHHHHHhCCCCCCCC------
Q 022605           72 STMQLLFMACRGDVK----GVEDLLNEGSDVNS----IDLDGRTALHIAACE---GHVEVVKLLLSKKANIDAR------  134 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~----~v~~Ll~~g~~~~~----~~~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~------  134 (294)
                      |.||||+||..|+.+    ++++|+++|++++.    +|..|+||||+|+..   |+.++|++|+++|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            678888888888886    45666667888877    777888888888887   8888888888877776533      


Q ss_pred             -----CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC----------------CCCCccccCCC---CCcccccCc--c
Q 022605          135 -----DRWGSTAAADAKYYGNVEVYNILKARGAKVPKT----------------KRTPMTVANPR---EVPEYELNP--L  188 (294)
Q Consensus       135 -----~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----------------~~t~l~~a~~~---~~~~~l~~~--~  188 (294)
                           |..|+||||+|+..|+.+++++|+++|++++..                |.||||+|+..   +++++|+..  .
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                 366888888888888888888888888777533                77888887554   456666663  3


Q ss_pred             hhhhhcccCCCCCceeeeee--cCchh-------hhHhhhccCCCC-------hHhhhhhhhHHHHHHHcCCCchhhhhh
Q 022605          189 ELQVRKADGITKGSYQVAKW--NGTKV-------WVKILDKESHKD-------PERINAFTHELTIVEKARHPNVVQFVG  252 (294)
Q Consensus       189 ~~~~~~~~~~~~t~l~~A~~--~g~~~-------~v~~Ll~~~~~~-------~~~~~~~~t~l~~a~~~~~~~iv~~L~  252 (294)
                      +.+++..+..|.||||+|+.  .++.+       ++++|++.|+..       ...+..|.||+|+|++.|+.+++++|.
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  241 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL  241 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            36667778889999999998  77888       999999888766       556678999999999999999999998


Q ss_pred             hhcCC
Q 022605          253 AVTQN  257 (294)
Q Consensus       253 ~~~~~  257 (294)
                      ..+..
T Consensus       242 ~~g~~  246 (256)
T 2etb_A          242 QREFS  246 (256)
T ss_dssp             HHHHH
T ss_pred             hCCCC
Confidence            87654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=3.7e-33  Score=225.57  Aligned_cols=162  Identities=20%  Similarity=0.165  Sum_probs=151.5

Q ss_pred             CCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 022605           66 VPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA  145 (294)
Q Consensus        66 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A  145 (294)
                      +..+..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCC
Q 022605          146 KYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKD  225 (294)
Q Consensus       146 ~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~  225 (294)
                      +..|+.+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++.+...
T Consensus       109 ~~~~~~~~v~~Ll~~g~~~~~~----------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  160 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHGANVNDR----------------------------NLEGETPLIVASKYGRSEIVKKLLELGADI  160 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCC----------------------------CTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHcCCHHHHHHHHHCCCCCCCC----------------------------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            9999999999999999886543                            456889999999999999999999998887


Q ss_pred             hHhhhhhhhHHHHHHHcCCCchhhhhhhhc
Q 022605          226 PERINAFTHELTIVEKARHPNVVQFVGAVT  255 (294)
Q Consensus       226 ~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~  255 (294)
                      ...+..|.||+++|+..++.+++++|...+
T Consensus       161 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          161 SARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            777889999999999999999999998764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.1e-33  Score=234.95  Aligned_cols=219  Identities=22%  Similarity=0.167  Sum_probs=195.8

Q ss_pred             CCCCccccccCCCCCccccCCCCCCCC-CCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 022605           38 RRNNMRFSFGRQSSLDPIRRSPVQDEL-TVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEG  116 (294)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g  116 (294)
                      .....++.++..++.+.+++++..... ....+..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   84 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   84 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence            345667888889999999888776544 4567889999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchh
Q 022605          117 HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLEL  190 (294)
Q Consensus       117 ~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~  190 (294)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..   |.||||+|+..   +++++|+..+ .
T Consensus        85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~  163 (231)
T 3aji_A           85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK-A  163 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-C
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-C
Confidence            999999999999999999999999999999999999999999999998654   99999999654   5667777644 5


Q ss_pred             hhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCC
Q 022605          191 QVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       191 ~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~  257 (294)
                      +++..+..|.||||+|+..|+.+++++|++.|++....+..|.||+++|+..++.+++++|...+++
T Consensus       164 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            6677788899999999999999999999999988877788999999999999999999999877653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=1.9e-32  Score=217.09  Aligned_cols=159  Identities=27%  Similarity=0.336  Sum_probs=146.4

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 022605           68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY  147 (294)
Q Consensus        68 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~  147 (294)
                      ....+.++|++||..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+.
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            45568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChH
Q 022605          148 YGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPE  227 (294)
Q Consensus       148 ~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~  227 (294)
                      .|+.+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++.+.+...
T Consensus        90 ~~~~~~~~~Ll~~g~~~~~~----------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  141 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVNAN----------------------------DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA  141 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC----------------------------CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cCCHHHHHHHHHcCCCCCCC----------------------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999886432                            45678999999999999999999999888777


Q ss_pred             hhhhhhhHHHHHHHcCCCchhhhhhhh
Q 022605          228 RINAFTHELTIVEKARHPNVVQFVGAV  254 (294)
Q Consensus       228 ~~~~~~t~l~~a~~~~~~~iv~~L~~~  254 (294)
                      .+..|.||+++|+..++.+++++|...
T Consensus       142 ~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          142 QDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            778899999999999999999999764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.8e-34  Score=237.16  Aligned_cols=198  Identities=19%  Similarity=0.158  Sum_probs=173.1

Q ss_pred             cCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Q 022605           82 RGDVKGVEDLLNEGSDVNSI-DLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKAR  160 (294)
Q Consensus        82 ~g~~~~v~~Ll~~g~~~~~~-~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  160 (294)
                      .|+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|++.
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            37788999999999998765 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCC---CCCCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhh
Q 022605          161 GA-KVP---KTKRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFT  233 (294)
Q Consensus       161 ga-~~~---~~~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  233 (294)
                      ++ +++   ..|.||||+|+..   +++++|+..+ .+++..+..|.||||+|+..|+.+++++|++.+......+..|.
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  159 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE  159 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcC-CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCc
Confidence            87 554   3499999999664   4566777643 56777788899999999999999999999999888777778899


Q ss_pred             hHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccccccccc
Q 022605          234 HELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHT  288 (294)
Q Consensus       234 t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~  288 (294)
                      ||+|+|+..++.+++++|...+.++        ...+..|.|||++|+.+++..+
T Consensus       160 t~L~~A~~~~~~~~v~~Ll~~ga~~--------~~~~~~g~t~l~~A~~~~~~~i  206 (223)
T 2f8y_A          160 TPLFLAAREGSYETAKVLLDHFANR--------DITDHMDRLPRDIAQERMHHDI  206 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCT--------TCCCTTCCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC--------ccccccCCCHHHHHHHhcchHH
Confidence            9999999999999999999998864        4467778999999999988654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.98  E-value=9.5e-34  Score=248.68  Aligned_cols=217  Identities=21%  Similarity=0.181  Sum_probs=184.0

Q ss_pred             CCCccccccCCCCCccccCCCCCCC---------------------------------CCCCCCCCchhHHHHHHHcCCH
Q 022605           39 RNNMRFSFGRQSSLDPIRRSPVQDE---------------------------------LTVPENLDSTMQLLFMACRGDV   85 (294)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~g~t~L~~Aa~~g~~   85 (294)
                      +.++++.++..++.+.++.++..+.                                 .....+..|.||||+|+..|+.
T Consensus        59 g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~  138 (337)
T 4g8k_A           59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV  138 (337)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcH
Confidence            4566777777777777766655443                                 3345677899999999999999


Q ss_pred             HHHHHHHhcCCCCCCC----------CCCCCcHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCC----
Q 022605           86 KGVEDLLNEGSDVNSI----------DLDGRTALHIAACEGHVEVVKLLLS-KKANIDARDRWGSTAAADAKYYGN----  150 (294)
Q Consensus        86 ~~v~~Ll~~g~~~~~~----------~~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~~~~g~t~L~~A~~~g~----  150 (294)
                      +++++|+++|++++..          +..|.||||+|+..|+.++|++|++ .|++++..|..|.||+|+++..+.    
T Consensus       139 ~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~  218 (337)
T 4g8k_A          139 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV  218 (337)
T ss_dssp             HHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTH
T ss_pred             HHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccH
Confidence            9999999999998754          3468999999999999999999996 599999999999999999887654    


Q ss_pred             HHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCC
Q 022605          151 VEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHK  224 (294)
Q Consensus       151 ~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~  224 (294)
                      ..++++|+++|++++..   |+||||+|+..   +.+++|+.....+++..+..|.||||+|+..|+.++|++|++.|++
T Consensus       219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  298 (337)
T 4g8k_A          219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  298 (337)
T ss_dssp             HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            46889999999999765   99999999765   4566777766788889999999999999999999999999999876


Q ss_pred             ChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCe
Q 022605          225 DPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPM  260 (294)
Q Consensus       225 ~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l  260 (294)
                      ..     ..+|+++|++.++.+||++|+..++++++
T Consensus       299 ~n-----~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          299 TD-----CGDLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             ST-----TCCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             CC-----CCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            53     35799999999999999999999998743

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.98  E-value=4.9e-33  Score=231.45  Aligned_cols=188  Identities=18%  Similarity=0.121  Sum_probs=147.8

Q ss_pred             CCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 022605           66 VPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA  145 (294)
Q Consensus        66 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A  145 (294)
                      ...+.++.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++..|..|+||||+|
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A   94 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA   94 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeee--eecCchhhhHhhhccCC
Q 022605          146 KYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVA--KWNGTKVWVKILDKESH  223 (294)
Q Consensus       146 ~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A--~~~g~~~~v~~Ll~~~~  223 (294)
                      +..|+.+++++|+++|++++..                           .+..|.||||+|  +..|+.+++++|++.++
T Consensus        95 ~~~g~~~~v~~Ll~~ga~~~~~---------------------------~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga  147 (229)
T 2vge_A           95 ASCNDTVICMALVQHGAAIFAT---------------------------TLSDGATAFEKCDPYREGYADCATYLADVEQ  147 (229)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCC---------------------------CSSTTCCTGGGCCTTSTTHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCcccc---------------------------cCCCCCCHHHHHHHHhcChHHHHHHHHHcCC
Confidence            9999999999999999987543                           023456677777  77777777777777766


Q ss_pred             CChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccccccccC
Q 022605          224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       224 ~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~~  289 (294)
                      +....+..+.++++.++..   ...++|...+.+.      +...++..|.||||+|+.+|+..++
T Consensus       148 ~~~~~~~~~~~~l~~~~~~---~~~~~ll~~ga~~------~~~~~d~~G~TpL~~A~~~g~~~~v  204 (229)
T 2vge_A          148 SMGLMNSGAVYALWDYSAE---FGDELSFREGESV------TVLRRDGPEETDWWWAALHGQEGYV  204 (229)
T ss_dssp             HTTTSGGGEEEESSCBCCS---STTBCCBCTTCEE------EEEESSCTTCSSEEEEEETTEEEEE
T ss_pred             CcccccCCchHHHHHHhhc---cccccCccccccc------cccccCCCcccHHHHHHHcCCccee
Confidence            5555555566666643332   2334554444431      2334566677777777777776654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.98  E-value=6.5e-35  Score=250.66  Aligned_cols=215  Identities=14%  Similarity=0.034  Sum_probs=189.6

Q ss_pred             CCCCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 022605           33 SSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIA  112 (294)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A  112 (294)
                      ...+..+.++++.++..++.+.++.++..+......  +|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  102 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA  102 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Confidence            455667788888899999999999998887766555  489999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHHHHCCCCCC-C-CCCCCccccCCC---CCcccccC
Q 022605          113 ACEGHVEVVKLLLSKKANIDARDRWG-STAAADAKYYGNVEVYNILKARGAKVP-K-TKRTPMTVANPR---EVPEYELN  186 (294)
Q Consensus       113 ~~~g~~~~v~~Ll~~gad~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~-~~~t~l~~a~~~---~~~~~l~~  186 (294)
                      +..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|+++. . .|.||||+|+..   +++++|+.
T Consensus       103 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  182 (285)
T 3kea_A          103 VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD  182 (285)
T ss_dssp             HHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence            99999999999999999999999999 799999999999999999999999873 3 589999999765   56777776


Q ss_pred             cchhhhhcccCCCCCc-eeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCC
Q 022605          187 PLELQVRKADGITKGS-YQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       187 ~~~~~~~~~~~~~~t~-l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~  257 (294)
                      .+ .+++..+..|.|| ||+|+..|+.+++++|++.|++....+.       .++..++.+++++|...+.+
T Consensus       183 ~g-ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~  246 (285)
T 3kea_A          183 YM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVE  246 (285)
T ss_dssp             HH-HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHH
T ss_pred             cC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCC
Confidence            54 7788888899997 9999999999999999999876655442       45678999999999988765

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=1.4e-32  Score=217.18  Aligned_cols=158  Identities=18%  Similarity=0.168  Sum_probs=147.9

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  150 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  150 (294)
                      +|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhh
Q 022605          151 VEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERIN  230 (294)
Q Consensus       151 ~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~  230 (294)
                      .+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++.+.+....+.
T Consensus        82 ~~~v~~Ll~~g~~~~~~----------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  133 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEY----------------------------DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD  133 (167)
T ss_dssp             HHHHHHHHHHTCCTTCC----------------------------CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHCCCCCCcC----------------------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            99999999999886433                            45688999999999999999999999888777788


Q ss_pred             hhhhHHHHHHHcCCCchhhhhhhhcC
Q 022605          231 AFTHELTIVEKARHPNVVQFVGAVTQ  256 (294)
Q Consensus       231 ~~~t~l~~a~~~~~~~iv~~L~~~~~  256 (294)
                      .|.||+++|+..|+.+++++|.....
T Consensus       134 ~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A          134 SGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            89999999999999999999987654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.98  E-value=1.2e-32  Score=216.16  Aligned_cols=158  Identities=25%  Similarity=0.247  Sum_probs=144.7

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  150 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  150 (294)
                      ...||||.|+..|+.+++++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++..+..|+||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            46799999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCC-hHhh
Q 022605          151 VEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKD-PERI  229 (294)
Q Consensus       151 ~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~-~~~~  229 (294)
                      .+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++.+..+ ...+
T Consensus        83 ~~~v~~Ll~~g~~~~~~----------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  134 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIE----------------------------DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN  134 (162)
T ss_dssp             HHHHHHHHHTTCCTTCC----------------------------CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC
T ss_pred             HHHHHHHHHcCCCCCCc----------------------------CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcC
Confidence            99999999999886543                            456889999999999999999999998875 5566


Q ss_pred             hhhhhHHHHHHHcCCCchhhhhhhhcCC
Q 022605          230 NAFTHELTIVEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       230 ~~~~t~l~~a~~~~~~~iv~~L~~~~~~  257 (294)
                      ..|.||+++|+..++.+++++|...+++
T Consensus       135 ~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          135 HKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            7889999999999999999999988763

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.98  E-value=3.9e-35  Score=252.90  Aligned_cols=207  Identities=18%  Similarity=0.159  Sum_probs=183.9

Q ss_pred             CCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 022605           35 FDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAAC  114 (294)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~  114 (294)
                      .+....+.++.++..++.+.++.++..+......+..|.||||+||..|+.++|++|+++|++++.+|..|+||||+|+.
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  115 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS  115 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            33445566788888999999999999888888889999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCC-----------------------------
Q 022605          115 EGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKAR-GAKV-----------------------------  164 (294)
Q Consensus       115 ~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~-----------------------------  164 (294)
                      .|+.++|++|+++|++++..+..|.||||+|+..++.+++++++.. |+++                             
T Consensus       116 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (299)
T 1s70_B          116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (299)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhh
Confidence            9999999999999999999999999999999999999999888753 5443                             


Q ss_pred             CCCCCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHH
Q 022605          165 PKTKRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEK  241 (294)
Q Consensus       165 ~~~~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~  241 (294)
                      +..|.||||+|+..   +++++|+..+ .+++..+..|.||||+|+..|+.+++++|++.|++....+..|.||+++|++
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          196 AKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             cCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            23599999999764   5677888755 6777888899999999999999999999999998888888899999999965


Q ss_pred             c
Q 022605          242 A  242 (294)
Q Consensus       242 ~  242 (294)
                      .
T Consensus       275 ~  275 (299)
T 1s70_B          275 D  275 (299)
T ss_dssp             G
T ss_pred             H
Confidence            3

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.7e-32  Score=217.77  Aligned_cols=158  Identities=18%  Similarity=0.158  Sum_probs=145.3

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 022605           72 STMQLLFMACRGDVKGVEDLLNEGSD-VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  150 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  150 (294)
                      +.||||.||..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            56899999999999999999999976 88999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhh
Q 022605          151 VEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERIN  230 (294)
Q Consensus       151 ~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~  230 (294)
                      .+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++.+.+....+.
T Consensus        82 ~~~v~~Ll~~g~~~~~~----------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  133 (172)
T 3v30_A           82 TDIVGLLLERDVDINIY----------------------------DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD  133 (172)
T ss_dssp             HHHHHHHHTTTCCTTCC----------------------------CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHcCCCCCCC----------------------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            99999999998876442                            45678999999999999999999999888777778


Q ss_pred             hhhhHHHHHHHcCCCchhhhhhhhcCC
Q 022605          231 AFTHELTIVEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       231 ~~~t~l~~a~~~~~~~iv~~L~~~~~~  257 (294)
                      .|.||+++|+..++.+++++|...+.+
T Consensus       134 ~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (172)
T 3v30_A          134 SGYTPMDLAVALGYRKVQQVIENHILK  160 (172)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence            899999999999999999999888764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=2.9e-33  Score=232.61  Aligned_cols=187  Identities=17%  Similarity=0.175  Sum_probs=162.6

Q ss_pred             CCCccccccCCCCCccccCCCCC-CCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCC-----CCCCCCCCcHHHHH
Q 022605           39 RNNMRFSFGRQSSLDPIRRSPVQ-DELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDV-----NSIDLDGRTALHIA  112 (294)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-----~~~~~~g~TpLh~A  112 (294)
                      +.+.++.++..++.+.++.++.. +......+..|.||||+|+..|+.++|++|+++|+++     +.+|..|.||||+|
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A   82 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA   82 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH
Confidence            35667788888999999998887 7777888999999999999999999999999999886     67788999999999


Q ss_pred             HHcCcHHHHHHHHhCCCCCCCCCC-------------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccC
Q 022605          113 ACEGHVEVVKLLLSKKANIDARDR-------------WGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVAN  176 (294)
Q Consensus       113 ~~~g~~~~v~~Ll~~gad~~~~~~-------------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~  176 (294)
                      +..|+.+++++|+++|++++..+.             .|+||||+|+..|+.+++++|+++|++++..   |+||||+|+
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~  162 (232)
T 2rfa_A           83 VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI  162 (232)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            999999999999999999998865             7999999999999999999999999998644   999999998


Q ss_pred             CCCCc-------ccccCcchhh-----hhcccCCCCCceeeeeecCchhhhHhhhccCCCC
Q 022605          177 PREVP-------EYELNPLELQ-----VRKADGITKGSYQVAKWNGTKVWVKILDKESHKD  225 (294)
Q Consensus       177 ~~~~~-------~~l~~~~~~~-----~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~  225 (294)
                      ..+..       ++|+..+...     .+..+..|.||||+|+..|+.+++++|++++...
T Consensus       163 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI  223 (232)
T ss_dssp             TCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            76443       5666554211     1467788999999999999999999999887544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=7.1e-34  Score=248.85  Aligned_cols=184  Identities=11%  Similarity=-0.004  Sum_probs=155.9

Q ss_pred             cccCCCCCCCCCCC-CCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc---HHHHHHHHhCC-
Q 022605           54 PIRRSPVQDELTVP-ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGH---VEVVKLLLSKK-  128 (294)
Q Consensus        54 ~~~~~~~~~~~~~~-~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~---~~~v~~Ll~~g-  128 (294)
                      .++.++..+...+. .+..|.||||+||..|+.++|++||++|++++.+|..|+||||+|+..|+   .++++.|++++ 
T Consensus       112 ~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~  191 (327)
T 1sw6_A          112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY  191 (327)
T ss_dssp             HHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             HHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhh
Confidence            34455666666666 79999999999999999999999999999999999999999999999999   78888998886 


Q ss_pred             CCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHC--------------------CCCCCCC---CCCCccccCCCCCc
Q 022605          129 ANIDARDRWGSTAAADAKY----YGNVEVYNILKAR--------------------GAKVPKT---KRTPMTVANPREVP  181 (294)
Q Consensus       129 ad~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~--------------------ga~~~~~---~~t~l~~a~~~~~~  181 (294)
                      ++++..|..|+||||+|+.    .|+.+++++|++.                    |++++..   |.||||+|+.   +
T Consensus       192 ~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~---~  268 (327)
T 1sw6_A          192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD---L  268 (327)
T ss_dssp             GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS---H
T ss_pred             ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH---H
Confidence            7899999999999999999    8999999999987                    7777544   9999999986   6


Q ss_pred             ccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcC
Q 022605          182 EYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKAR  243 (294)
Q Consensus       182 ~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  243 (294)
                      ++|+..   +++..+..|.||||+|+..|+.++|++|++.|++....+..|+||+|+|+++|
T Consensus       269 ~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          269 KWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            677654   57778889999999999999999999999999888888889999999997654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=6.7e-32  Score=210.32  Aligned_cols=152  Identities=22%  Similarity=0.244  Sum_probs=141.6

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  150 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  150 (294)
                      +..||||.|+..|+.++|++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+
T Consensus         1 d~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            35799999999999999999999999887 58899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhh
Q 022605          151 VEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERIN  230 (294)
Q Consensus       151 ~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~  230 (294)
                      .+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++.+.+....+.
T Consensus        80 ~~~v~~Ll~~g~~~~~~----------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  131 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAK----------------------------DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK  131 (153)
T ss_dssp             HHHHHHHHTTTCCTTCC----------------------------CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHcCCCCCCC----------------------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            99999999999886433                            45688999999999999999999999888777788


Q ss_pred             hhhhHHHHHHHcCCCchhhhh
Q 022605          231 AFTHELTIVEKARHPNVVQFV  251 (294)
Q Consensus       231 ~~~t~l~~a~~~~~~~iv~~L  251 (294)
                      .|.||+++|+..|+.+++++|
T Consensus       132 ~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          132 FCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHh
Confidence            899999999999999999998

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=4.8e-33  Score=226.11  Aligned_cols=185  Identities=14%  Similarity=0.186  Sum_probs=165.5

Q ss_pred             CCCCCccccccCCCCCccccCCCCCCC-CCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 022605           37 PRRNNMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACE  115 (294)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~  115 (294)
                      ....+.++.++..++.+.++.++.... .....+..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            345667788888999999999888776 6677788999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHH-hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCC---CCCCccccCCC--------CCcc
Q 022605          116 GHVEVVKLLL-SKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG-AKVPKT---KRTPMTVANPR--------EVPE  182 (294)
Q Consensus       116 g~~~~v~~Ll-~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~---~~t~l~~a~~~--------~~~~  182 (294)
                      |+.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|++.| ++++..   |+||||+|+..        ++++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            9999999999 568899999999999999999999999999999999 787544   99999999643        4677


Q ss_pred             cccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccC
Q 022605          183 YELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKES  222 (294)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~  222 (294)
                      +|++.+ .+++..+..|.||||+|+..|+.+++++|++.|
T Consensus       163 ~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          163 LLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            777665 677788889999999999999999999999764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=5.2e-33  Score=236.94  Aligned_cols=193  Identities=15%  Similarity=0.101  Sum_probs=122.6

Q ss_pred             CCCCCccccccCCCCCccccCCCCC----CCCCC----CCCCCchhHHHHHHHc---CCHHHHHHHHhcCCCC-------
Q 022605           37 PRRNNMRFSFGRQSSLDPIRRSPVQ----DELTV----PENLDSTMQLLFMACR---GDVKGVEDLLNEGSDV-------   98 (294)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~-------   98 (294)
                      ....+.++.++..++.+.++.++..    +....    ..+..|.||||+|+..   |+.++|++|+++|+++       
T Consensus        11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i   90 (273)
T 2pnn_A           11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV   90 (273)
T ss_dssp             CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence            3444555555556666655555431    11111    2345566666666654   6666666666655431       


Q ss_pred             CC----CCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCC--------------CCCCHHHHHHHcCCHHHHHHHHH-
Q 022605           99 NS----IDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR--------------WGSTAAADAKYYGNVEVYNILKA-  159 (294)
Q Consensus        99 ~~----~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~--------------~g~t~L~~A~~~g~~~~v~~Ll~-  159 (294)
                      +.    +|..|.||||+|+..|+.++|++|+++|++++..+.              .|+||||+|+..|+.+++++|++ 
T Consensus        91 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  170 (273)
T 2pnn_A           91 NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN  170 (273)
T ss_dssp             TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred             hcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            11    344566666666666666666666666666666554              56666666666666666666666 


Q ss_pred             --CCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCc---------hhhhHhhhccCCCCh--
Q 022605          160 --RGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGT---------KVWVKILDKESHKDP--  226 (294)
Q Consensus       160 --~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~---------~~~v~~Ll~~~~~~~--  226 (294)
                        .|+++                            +..+..|.||||+|+..|+         .+++++|++.++...  
T Consensus       171 ~~~gad~----------------------------~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~  222 (273)
T 2pnn_A          171 SWQPADI----------------------------SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT  222 (273)
T ss_dssp             SSCCCCT----------------------------TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccCCCCc----------------------------eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccc
Confidence              55554                            4446677888888888887         788889987775442  


Q ss_pred             -----HhhhhhhhHHHHHHHcCCCchhhhhhhhcCC
Q 022605          227 -----ERINAFTHELTIVEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       227 -----~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~  257 (294)
                           ..+..|.||||+|++.|+.+++++|+..++.
T Consensus       223 ~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence                 2566788999999999999999999888884

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=2.7e-33  Score=245.20  Aligned_cols=192  Identities=16%  Similarity=0.044  Sum_probs=120.7

Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC---HH
Q 022605           77 LFMACRGDVKGVEDLLNEGSDVNS-IDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN---VE  152 (294)
Q Consensus        77 ~~Aa~~g~~~~v~~Ll~~g~~~~~-~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~---~~  152 (294)
                      |.|+..+..+++++|++.|+++|. +|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+   .+
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~  181 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG  181 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTT
T ss_pred             HHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHH
Confidence            444444455555555666666666 66667777777777777777777777777777666667777777776666   56


Q ss_pred             HHHHHHHCC-CCC---CCCCCCCccccCC----C---CCcccccCcc-------------------hhhhhcccCCCCCc
Q 022605          153 VYNILKARG-AKV---PKTKRTPMTVANP----R---EVPEYELNPL-------------------ELQVRKADGITKGS  202 (294)
Q Consensus       153 ~v~~Ll~~g-a~~---~~~~~t~l~~a~~----~---~~~~~l~~~~-------------------~~~~~~~~~~~~t~  202 (294)
                      +++.|++.+ +++   +..|+||||+|+.    .   ++++++++.+                   +.+++..+..|.||
T Consensus       182 ~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~  261 (327)
T 1sw6_A          182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS  261 (327)
T ss_dssp             CHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CH
T ss_pred             HHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCCh
Confidence            666666554 333   3346677776643    2   3445554432                   34455555666667


Q ss_pred             eeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccc
Q 022605          203 YQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSF  282 (294)
Q Consensus       203 l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~  282 (294)
                      ||.|+.      +++|++.  .....+..|+||||+|++.|+.++|++|+..++++        ...+..|.||||+|+.
T Consensus       262 L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~--------~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          262 ILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP--------FIANKSGLRPVDFGAG  325 (327)
T ss_dssp             HHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT--------TCCCTTSCCGGGGTCC
T ss_pred             hHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--------cccCCCCCCHHHHHHh
Confidence            766664      6666655  24445578999999999999999999999999874        4577889999999998


Q ss_pred             cc
Q 022605          283 HK  284 (294)
Q Consensus       283 n~  284 (294)
                      +|
T Consensus       326 ~g  327 (327)
T 1sw6_A          326 LE  327 (327)
T ss_dssp             --
T ss_pred             cC
Confidence            75

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=7.5e-33  Score=235.93  Aligned_cols=210  Identities=15%  Similarity=0.095  Sum_probs=166.0

Q ss_pred             CCCCCCCchhHHHHHHHcCCHHHHHHHHh----cCCCCC----CCCCCCCcHHHHHHHc---CcHHHHHHHHhCCCCC--
Q 022605           65 TVPENLDSTMQLLFMACRGDVKGVEDLLN----EGSDVN----SIDLDGRTALHIAACE---GHVEVVKLLLSKKANI--  131 (294)
Q Consensus        65 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~----~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~--  131 (294)
                      ....+..|.||||+||..|+.++|+.|++    .+++++    ..|..|+||||+|+..   |+.++|++|+++|+++  
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            44567889999999999999999998887    567766    4578999999999987   9999999999998763  


Q ss_pred             -----CC----CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCc
Q 022605          132 -----DA----RDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGS  202 (294)
Q Consensus       132 -----~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~  202 (294)
                           +.    .|..|+||||+|+..|+.+++++|+++|++++......+..              .......+..|.||
T Consensus        86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~--------------~~~~~~~~~~g~tp  151 (273)
T 2pnn_A           86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK--------------KTKGRPGFYFGELP  151 (273)
T ss_dssp             HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGS--------------SCSSSCCCCSCBSH
T ss_pred             hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccc--------------cccccccccCCCCH
Confidence                 32    56789999999999999999999999999998763322110              01223345578999


Q ss_pred             eeeeeecCchhhhHhhhc---cCCCChHhhhhhhhHHHHHHHcCC---------CchhhhhhhhcCCCCeEEEEecCCCC
Q 022605          203 YQVAKWNGTKVWVKILDK---ESHKDPERINAFTHELTIVEKARH---------PNVVQFVGAVTQNIPMMIVLEYHAKV  270 (294)
Q Consensus       203 l~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~iv~~L~~~~~~~~l~~~~e~~~~g  270 (294)
                      ||+|+..|+.++|++|++   .+......+..|.||||+|+..++         .+++++|...+.+..... .-....+
T Consensus       152 L~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~-~~~~~~d  230 (273)
T 2pnn_A          152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL-KLEEITN  230 (273)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-CGGGCCC
T ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccc-ccccccC
Confidence            999999999999999999   788777778899999999999998         689999998877531000 0001367


Q ss_pred             CCCcccccccccccccccC
Q 022605          271 SMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       271 ~l~~t~l~~a~~n~~~~~~  289 (294)
                      ..|.||||+|+.+++..++
T Consensus       231 ~~g~TpL~~A~~~g~~~iv  249 (273)
T 2pnn_A          231 RKGLTPLALAASSGKIGVL  249 (273)
T ss_dssp             TTSCCHHHHHHHTTCHHHH
T ss_pred             CCCCCHHHHHHHhChHHHH
Confidence            7899999999999987654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.2e-32  Score=229.14  Aligned_cols=182  Identities=18%  Similarity=0.125  Sum_probs=165.3

Q ss_pred             CCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc
Q 022605           38 RRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGH  117 (294)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~  117 (294)
                      ...+.++.++..++.+.++.++..+......+..|.||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~   99 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCND   99 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            34455777888999999999998888888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCC-CCCCCHHHHH--HHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCCCCcccccCcc-hh
Q 022605          118 VEVVKLLLSKKANIDARD-RWGSTAAADA--KYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPL-EL  190 (294)
Q Consensus       118 ~~~v~~Ll~~gad~~~~~-~~g~t~L~~A--~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~~~~~~l~~~~-~~  190 (294)
                      .+++++|+++|++++..+ ..|+||||+|  +..|+.+++++|+++|++++..   +.||++.++.....++++..+ +.
T Consensus       100 ~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~  179 (229)
T 2vge_A          100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESV  179 (229)
T ss_dssp             HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEE
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccccc
Confidence            999999999999999987 6999999999  9999999999999999998765   789999888777778888776 35


Q ss_pred             hhhcccCCCCCceeeeeecCchhhhHhhh
Q 022605          191 QVRKADGITKGSYQVAKWNGTKVWVKILD  219 (294)
Q Consensus       191 ~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll  219 (294)
                      +++..+..|.||||+|+..|+.++|+.++
T Consensus       180 ~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          180 TVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             EEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             cccccCCCcccHHHHHHHcCCcceeehhh
Confidence            57888999999999999999999998755

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.1e-32  Score=233.11  Aligned_cols=189  Identities=17%  Similarity=0.117  Sum_probs=133.0

Q ss_pred             CccccccCCCCCccccCCCC----CCCCCCCCC----CCchhHHHHHH---HcCCHHHHHHHHhcCCC-----------C
Q 022605           41 NMRFSFGRQSSLDPIRRSPV----QDELTVPEN----LDSTMQLLFMA---CRGDVKGVEDLLNEGSD-----------V   98 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~g~t~L~~Aa---~~g~~~~v~~Ll~~g~~-----------~   98 (294)
                      +.++.+++.++.+.++.++.    .+......+    ..|.||||+|+   ..|+.++|++|++.|++           +
T Consensus         7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~   86 (260)
T 3jxi_A            7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF   86 (260)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence            44566666677776666555    343333332    55777777777   56777777777776633           3


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC--------------CCCCCHHHHHHHcCCHHHHHHHHH---CC
Q 022605           99 NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD--------------RWGSTAAADAKYYGNVEVYNILKA---RG  161 (294)
Q Consensus        99 ~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~--------------~~g~t~L~~A~~~g~~~~v~~Ll~---~g  161 (294)
                      +..|..|+||||+|+..|+.++|++|+++|++++..+              ..|+||||+|+..|+.+++++|++   .|
T Consensus        87 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  166 (260)
T 3jxi_A           87 RDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ  166 (260)
T ss_dssp             CCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence            3344467777777777777777777777777777776              567777777777777777777777   66


Q ss_pred             CCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCc---------hhhhHhhhccCCCC-------
Q 022605          162 AKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGT---------KVWVKILDKESHKD-------  225 (294)
Q Consensus       162 a~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~---------~~~v~~Ll~~~~~~-------  225 (294)
                      ++++.                            .+..|.||||+|+..|+         .+++++|++.|+..       
T Consensus       167 a~~~~----------------------------~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~  218 (260)
T 3jxi_A          167 ADLRR----------------------------QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLE  218 (260)
T ss_dssp             CCTTC----------------------------CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred             CCCcc----------------------------cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchh
Confidence            66543                            35567788888887766         68888888777654       


Q ss_pred             hHhhhhhhhHHHHHHHcCCCchhhhhhhhcCC
Q 022605          226 PERINAFTHELTIVEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       226 ~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~  257 (294)
                      ...+..|.||||+|++.|+.+++++|+..+..
T Consensus       219 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          219 ALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             GCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            34566788899999888888888888877654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.5e-32  Score=231.80  Aligned_cols=184  Identities=16%  Similarity=0.105  Sum_probs=156.7

Q ss_pred             CccccccCCCCCccccCCCC----CCCCCCC----CCCCchhHHHHHHHc---CCHHHHHHHHhcCCCCCCC--------
Q 022605           41 NMRFSFGRQSSLDPIRRSPV----QDELTVP----ENLDSTMQLLFMACR---GDVKGVEDLLNEGSDVNSI--------  101 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~--------  101 (294)
                      +.++.++..++.+.++.+++    .+.....    .+..|.||||+|+..   |+.++|++|+++|++++..        
T Consensus         4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~   83 (256)
T 2etb_A            4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC   83 (256)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence            45667777888876665544    4555555    788999999999999   9999999999999877633        


Q ss_pred             ---CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCC-------------CCCHHHHHHHcCCHHHHHHHHH---CCC
Q 022605          102 ---DLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRW-------------GSTAAADAKYYGNVEVYNILKA---RGA  162 (294)
Q Consensus       102 ---~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~-------------g~t~L~~A~~~g~~~~v~~Ll~---~ga  162 (294)
                         |..|.||||+|+..|+.++|++|+++|++++..+..             |+||||+|+..|+.+++++|++   .|+
T Consensus        84 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga  163 (256)
T 2etb_A           84 TDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA  163 (256)
T ss_dssp             CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             ccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence               377999999999999999999999999999999886             9999999999999999999999   999


Q ss_pred             CCCCC---CCCCccccCC--CC----------CcccccCcchhhh-------hcccCCCCCceeeeeecCchhhhHhhhc
Q 022605          163 KVPKT---KRTPMTVANP--RE----------VPEYELNPLELQV-------RKADGITKGSYQVAKWNGTKVWVKILDK  220 (294)
Q Consensus       163 ~~~~~---~~t~l~~a~~--~~----------~~~~l~~~~~~~~-------~~~~~~~~t~l~~A~~~g~~~~v~~Ll~  220 (294)
                      +++..   |+||||+|+.  .+          ++++|+..+ .++       +..+..|.||||+|+..|+.+++++|++
T Consensus       164 ~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  242 (256)
T 2etb_A          164 SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ  242 (256)
T ss_dssp             CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHh
Confidence            98654   9999999975  32          667777655 555       7788899999999999999999999998


Q ss_pred             cCCCC
Q 022605          221 ESHKD  225 (294)
Q Consensus       221 ~~~~~  225 (294)
                      .+...
T Consensus       243 ~g~~~  247 (256)
T 2etb_A          243 REFSG  247 (256)
T ss_dssp             HHHHH
T ss_pred             CCCCC
Confidence            87543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=8.8e-31  Score=204.37  Aligned_cols=152  Identities=24%  Similarity=0.270  Sum_probs=140.3

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 022605           72 STMQLLFMACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  150 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  150 (294)
                      +.||||.|+..|+.+++++|++. +.+++.+|..|.||||+ +..|+.+++++|+++|++++..|..|+||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            67999999999999999999998 45899999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhh
Q 022605          151 VEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERIN  230 (294)
Q Consensus       151 ~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~  230 (294)
                      .+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++. ......+.
T Consensus        81 ~~~v~~Ll~~g~~~~~~----------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~  131 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVP----------------------------DGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA  131 (156)
T ss_dssp             HHHHHHHHHTTCCSCCC----------------------------CTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT
T ss_pred             HHHHHHHHHcCCCCCCc----------------------------CCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC
Confidence            99999999999887543                            45688999999999999999999987 66666777


Q ss_pred             hhhhHHHHHHHcCCCchhhhhhh
Q 022605          231 AFTHELTIVEKARHPNVVQFVGA  253 (294)
Q Consensus       231 ~~~t~l~~a~~~~~~~iv~~L~~  253 (294)
                      .|.||+++|+..++.+++++|..
T Consensus       132 ~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          132 RGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             TSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHh
Confidence            89999999999999999999965

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=2.1e-31  Score=209.95  Aligned_cols=159  Identities=26%  Similarity=0.283  Sum_probs=132.4

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 022605           68 ENLDSTMQLLFMACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  146 (294)
Q Consensus        68 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~  146 (294)
                      .+.++.||||.|+..|+.++|++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            456788999999999999999999985 5678888888999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCCh
Q 022605          147 YYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDP  226 (294)
Q Consensus       147 ~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~  226 (294)
                      ..|+.+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++.+.+..
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~----------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  135 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVA----------------------------DLWKFTPLHEAAAKGKYEICKLLLQHGADPT  135 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCC----------------------------CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HcCcHHHHHHHHhCCCCCCCc----------------------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            999999999999998876443                            4456778888888888888888888777776


Q ss_pred             HhhhhhhhHHHHHHHcCCCchhhhhhhhc
Q 022605          227 ERINAFTHELTIVEKARHPNVVQFVGAVT  255 (294)
Q Consensus       227 ~~~~~~~t~l~~a~~~~~~~iv~~L~~~~  255 (294)
                      ..+..|.||+++|.. ++.+|+++|...+
T Consensus       136 ~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A          136 KKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             CCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             ccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            677778888888665 7778888886554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=8.1e-31  Score=224.08  Aligned_cols=163  Identities=18%  Similarity=0.138  Sum_probs=147.9

Q ss_pred             CCCCCCCchhHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHHH-----HcCcHHHHHHHHhCCCCCCCCCCCC
Q 022605           65 TVPENLDSTMQLLFMACRGDVKGVEDLLNEGS-DVNSIDLDGRTALHIAA-----CEGHVEVVKLLLSKKANIDARDRWG  138 (294)
Q Consensus        65 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~~~~g~TpLh~A~-----~~g~~~~v~~Ll~~gad~~~~~~~g  138 (294)
                      .+..|..|.||||+|+..|+.++|++|++.|+ +++.++..|.||||+|+     ..++.+++++|++.|++++..+..|
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g  183 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG  183 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence            45678889999999999999999999999997 99999999999999999     6789999999999999999999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhh
Q 022605          139 STAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKIL  218 (294)
Q Consensus       139 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~L  218 (294)
                      +||||+|+..|+.+++++|+++|+++|..                            +..|.||||+|+..|+.++|++|
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~----------------------------d~~G~TpLh~A~~~g~~~iv~~L  235 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACEADVNVQ----------------------------DDDGSTALMCACEHGHKEIAGLL  235 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------------------------CTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCC----------------------------CCCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999999887543                            56788999999999999999999


Q ss_pred             hc-cCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhc
Q 022605          219 DK-ESHKDPERINAFTHELTIVEKARHPNVVQFVGAVT  255 (294)
Q Consensus       219 l~-~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~  255 (294)
                      ++ .+.+....+..|.||+++|+..|+.+++++|....
T Consensus       236 l~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          236 LAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            98 67777777788999999999999999999998764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=4.2e-31  Score=211.16  Aligned_cols=161  Identities=17%  Similarity=0.117  Sum_probs=141.9

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 022605           70 LDSTMQLLFMACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY  148 (294)
Q Consensus        70 ~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~  148 (294)
                      .++.++||.|+..|+.++|++|++. +.+++.+|..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            4577899999999999999999998 578999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHh
Q 022605          149 GNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPER  228 (294)
Q Consensus       149 g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~  228 (294)
                      |+.+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++.++.....
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~----------------------------d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  134 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAV----------------------------NEHGNVPLHYACFWGQDQVAEDLVANGALVSIC  134 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCC----------------------------CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBC
T ss_pred             CCHHHHHHHHHcCCCCCcc----------------------------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchh
Confidence            9999999999999886443                            456788999999999999999999888877777


Q ss_pred             hhhhhhHHHHHHHcCCCchhhhhhhhcCCC
Q 022605          229 INAFTHELTIVEKARHPNVVQFVGAVTQNI  258 (294)
Q Consensus       229 ~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~  258 (294)
                      +..|.||+++|+..++.+++++|...+++.
T Consensus       135 ~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A          135 NKYGEMPVDKAKAPLRELLRERAEKMGQNL  164 (179)
T ss_dssp             CTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred             ccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence            788899999999999999999998888775

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.3e-31  Score=226.47  Aligned_cols=206  Identities=14%  Similarity=0.052  Sum_probs=164.1

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHH----hcCCCCCCCC----CCCCcHHHHHH---HcCcHHHHHHHHhCCCC-------
Q 022605           69 NLDSTMQLLFMACRGDVKGVEDLL----NEGSDVNSID----LDGRTALHIAA---CEGHVEVVKLLLSKKAN-------  130 (294)
Q Consensus        69 ~~~g~t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~----~~g~TpLh~A~---~~g~~~~v~~Ll~~gad-------  130 (294)
                      +..++|+||.||..|+.++|+.|+    +.|++++..+    ..|.||||+|+   ..|+.++|++|+++|++       
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            346899999999999999655554    5899998766    67999999999   77999999999998854       


Q ss_pred             ----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeee
Q 022605          131 ----IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVA  206 (294)
Q Consensus       131 ----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A  206 (294)
                          ++..|..|+||||+|+..|+.++|++|+++|++++......+..              ..+....+..|.||||+|
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~--------------~~~~~~~~~~g~tpL~~A  147 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ--------------PKDEGGYFYFGELPLSLA  147 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCS--------------SSCCCCSCCSCSSHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccC--------------cccccccccCCCCHHHHH
Confidence                44556699999999999999999999999999998763321110              012223346789999999


Q ss_pred             eecCchhhhHhhhc---cCCCChHhhhhhhhHHHHHHHcCC---------CchhhhhhhhcCCCCeEEEEecCCCCCCCc
Q 022605          207 KWNGTKVWVKILDK---ESHKDPERINAFTHELTIVEKARH---------PNVVQFVGAVTQNIPMMIVLEYHAKVSMPI  274 (294)
Q Consensus       207 ~~~g~~~~v~~Ll~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~  274 (294)
                      +..|+.++|++|++   .+......+..|.||||+|+..++         .+++++|...+.+..... .-....+..|.
T Consensus       148 ~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~-~~~~~~d~~g~  226 (260)
T 3jxi_A          148 ACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT-NLEALLNNDGL  226 (260)
T ss_dssp             HHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTC-CGGGCCCTTSC
T ss_pred             HHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccccc-chhhcccCCCC
Confidence            99999999999999   787777778899999999999888         589999998887531000 00034678899


Q ss_pred             ccccccccccccccC
Q 022605          275 TPFLTLSFHKQTHTS  289 (294)
Q Consensus       275 t~l~~a~~n~~~~~~  289 (294)
                      ||||+|+.+++..++
T Consensus       227 tpL~~A~~~g~~~~v  241 (260)
T 3jxi_A          227 SPLMMAAKTGKIGIF  241 (260)
T ss_dssp             CHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHcCCHHHH
Confidence            999999999987654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=4.6e-31  Score=209.41  Aligned_cols=168  Identities=19%  Similarity=0.200  Sum_probs=144.7

Q ss_pred             CCccccccCCCCCccccCCCCCCCC-CCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q 022605           40 NNMRFSFGRQSSLDPIRRSPVQDEL-TVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHV  118 (294)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~  118 (294)
                      ...++.++..++.+.++.++..+.. ....+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence            3466778888999999998888776 566788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCC
Q 022605          119 EVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGI  198 (294)
Q Consensus       119 ~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~  198 (294)
                      +++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..                            +..
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~----------------------------~~~  134 (172)
T 3v30_A           83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE----------------------------ADS  134 (172)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------------------------CTT
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc----------------------------CCC
Confidence            9999999999999999999999999999999999999999999887443                            456


Q ss_pred             CCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhH
Q 022605          199 TKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHE  235 (294)
Q Consensus       199 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~  235 (294)
                      |.||||+|+..|+.+++++|++.+.........+.||
T Consensus       135 g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          135 GYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             CCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            8899999999999999999998775443333334443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=5.4e-31  Score=220.43  Aligned_cols=186  Identities=15%  Similarity=0.047  Sum_probs=107.3

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q 022605           70 LDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYG  149 (294)
Q Consensus        70 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g  149 (294)
                      ..|.||||.|+..|+.++++.|+++|++++. +..|.||||+|+..|+.++|++|++.|++++..|..|+||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            4577888888888888888888888887775 366778888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhh
Q 022605          150 NVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERI  229 (294)
Q Consensus       150 ~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~  229 (294)
                      +.+++++|+++|++++..                            +..|.||||+|+..|+.++|++|++.+++....+
T Consensus        82 ~~~~v~~Ll~~ga~~~~~----------------------------d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  133 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAA----------------------------DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT  133 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCC----------------------------CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CHHHHHHHHHcCCCCCcc----------------------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceec
Confidence            888888888877766432                            4456778888888888888888887776666555


Q ss_pred             hhhh-hHHHHH--HHcCCCchhhhhhhhcCCCCeE---EEEecCCCCCCCccccccccccccc
Q 022605          230 NAFT-HELTIV--EKARHPNVVQFVGAVTQNIPMM---IVLEYHAKVSMPITPFLTLSFHKQT  286 (294)
Q Consensus       230 ~~~~-t~l~~a--~~~~~~~iv~~L~~~~~~~~l~---~~~e~~~~g~l~~t~l~~a~~n~~~  286 (294)
                      ..+. ||+|+|  +..|+.+++++|...+++....   ..  .......+.++++++...|.+
T Consensus       134 ~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~--~al~d~~~~~~~eLa~~~G~~  194 (239)
T 1ycs_B          134 YSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVI--YALWDYEPQNDDELPMKEGDC  194 (239)
T ss_dssp             SSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEE--EESSCBCCSSTTBCCBCSSCE
T ss_pred             CCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceE--EEEeccCCCCCCcccccCCCE
Confidence            5555 888877  6677788888887766554220   00  011133345677777766654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=7.7e-30  Score=200.95  Aligned_cols=158  Identities=23%  Similarity=0.286  Sum_probs=137.7

Q ss_pred             CCCCCccccccCCCCCccccCCCCCCC-CCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 022605           37 PRRNNMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACE  115 (294)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~  115 (294)
                      +...+.++.++..++.+.++.++.... .....+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence            344556777888889898988887544 4455677899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcc
Q 022605          116 GHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKA  195 (294)
Q Consensus       116 g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~  195 (294)
                      |+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..                            
T Consensus        86 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~----------------------------  137 (165)
T 3twr_A           86 GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK----------------------------  137 (165)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------------------------
T ss_pred             CcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc----------------------------
Confidence            9999999999999999999999999999999999999999999999887443                            


Q ss_pred             cCCCCCceeeeeecCchhhhHhhhccCC
Q 022605          196 DGITKGSYQVAKWNGTKVWVKILDKESH  223 (294)
Q Consensus       196 ~~~~~t~l~~A~~~g~~~~v~~Ll~~~~  223 (294)
                      +..|.||||+|+. |+.+++++|++.|+
T Consensus       138 ~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          138 NRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            5567888888776 88899999987654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=4.4e-30  Score=203.42  Aligned_cols=157  Identities=29%  Similarity=0.387  Sum_probs=144.0

Q ss_pred             CCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc
Q 022605           38 RRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGH  117 (294)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~  117 (294)
                      .....++.++..++.+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   92 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH   92 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            34456677888999999999999988888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccC
Q 022605          118 VEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADG  197 (294)
Q Consensus       118 ~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~  197 (294)
                      .+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..                            +.
T Consensus        93 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----------------------------~~  144 (169)
T 2y1l_E           93 LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ----------------------------DK  144 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------------------------CT
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc----------------------------CC
Confidence            99999999999999999999999999999999999999999999886443                            45


Q ss_pred             CCCCceeeeeecCchhhhHhhhccC
Q 022605          198 ITKGSYQVAKWNGTKVWVKILDKES  222 (294)
Q Consensus       198 ~~~t~l~~A~~~g~~~~v~~Ll~~~  222 (294)
                      .|.|||++|+..|+.+++++|++.|
T Consensus       145 ~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          145 FGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            6889999999999999999998654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=3.5e-30  Score=202.15  Aligned_cols=157  Identities=19%  Similarity=0.192  Sum_probs=142.9

Q ss_pred             CCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q 022605           39 RNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHV  118 (294)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~  118 (294)
                      ..+.++.++..++.+.++.++..+......+..|.||||+|+. |+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            3456677788899999999998888888889999999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCC
Q 022605          119 EVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGI  198 (294)
Q Consensus       119 ~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~  198 (294)
                      +++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++.                           ++..+..
T Consensus        84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------------------------~~~~~~~  136 (162)
T 1ihb_A           84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN---------------------------VGHRNHK  136 (162)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC---------------------------TTCCCTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC---------------------------CCCcCCC
Confidence            9999999999999999999999999999999999999999998862                           1233567


Q ss_pred             CCCceeeeeecCchhhhHhhhccCC
Q 022605          199 TKGSYQVAKWNGTKVWVKILDKESH  223 (294)
Q Consensus       199 ~~t~l~~A~~~g~~~~v~~Ll~~~~  223 (294)
                      |.||||+|+..|+.+++++|++.|+
T Consensus       137 g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          137 GDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            8899999999999999999998875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.9e-30  Score=217.16  Aligned_cols=213  Identities=19%  Similarity=0.068  Sum_probs=136.8

Q ss_pred             CCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q 022605           39 RNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHV  118 (294)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~  118 (294)
                      +.+.++.+++.+..+.++.++..+.... .+..|.||||+|+..|+.++|++|+++|+++|.+|..|.||||+|+..|+.
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~   83 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHT   83 (239)
T ss_dssp             ---------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCH
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCCcc-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            4556677777788888888887776554 347789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCC
Q 022605          119 EVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGI  198 (294)
Q Consensus       119 ~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~  198 (294)
                      ++|++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..                            +..
T Consensus        84 ~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~----------------------------~~~  135 (239)
T 1ycs_B           84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM----------------------------TYS  135 (239)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------------------------CSS
T ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee----------------------------cCC
Confidence            9999999999999999999999999999999999999999999998654                            222


Q ss_pred             CC-Cceeee--eecCchhhhHhhhccCCCChHhh---------hhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEec
Q 022605          199 TK-GSYQVA--KWNGTKVWVKILDKESHKDPERI---------NAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY  266 (294)
Q Consensus       199 ~~-t~l~~A--~~~g~~~~v~~Ll~~~~~~~~~~---------~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~  266 (294)
                      +. ||||+|  +..|+.+++++|++.++.....+         ..+.++.+++...|  ++++.|.....++.-+.--+ 
T Consensus       136 ~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G--~~i~vl~~~~~~~~~Ww~~~-  212 (239)
T 1ycs_B          136 DMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEG--DCMTIIHREDEDEIEWWWAR-  212 (239)
T ss_dssp             SCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSS--CEEEECCCCTTSCSSEEEEE-
T ss_pred             CCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCC--CEEEEEEecCCCCCCEEEEE-
Confidence            22 666666  56677777777776654433222         12345555554444  35555544433322222222 


Q ss_pred             CCCCCCCccccccccccc
Q 022605          267 HAKVSMPITPFLTLSFHK  284 (294)
Q Consensus       267 ~~~g~l~~t~l~~a~~n~  284 (294)
                       .+|..|.+|..+.....
T Consensus       213 -~~~~~G~~P~~yv~~~~  229 (239)
T 1ycs_B          213 -LNDKEGYVPRNLLGLYP  229 (239)
T ss_dssp             -ETTEEEEEEGGGEECCC
T ss_pred             -ECCcEEEeehHHeeECC
Confidence             25666777777765543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=8.3e-30  Score=203.64  Aligned_cols=164  Identities=23%  Similarity=0.212  Sum_probs=144.8

Q ss_pred             CCCCCccccccCCCCCccccCCCCCC-CCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 022605           37 PRRNNMRFSFGRQSSLDPIRRSPVQD-ELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACE  115 (294)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~  115 (294)
                      +...+.++.++..++.+.++.++... ......+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            34556778888899999999888774 44667888999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcc
Q 022605          116 GHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKA  195 (294)
Q Consensus       116 g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~  195 (294)
                      |+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..                            
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~----------------------------  134 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC----------------------------  134 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBC----------------------------
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchh----------------------------
Confidence            9999999999999999999999999999999999999999999999886433                            


Q ss_pred             cCCCCCceeeeeecCchhhhHhhhccCCCChHh
Q 022605          196 DGITKGSYQVAKWNGTKVWVKILDKESHKDPER  228 (294)
Q Consensus       196 ~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~  228 (294)
                      +..|.|||++|+..++.+++++|++.+......
T Consensus       135 ~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~  167 (179)
T 3f6q_A          135 NKYGEMPVDKAKAPLRELLRERAEKMGQNLNRI  167 (179)
T ss_dssp             CTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCB
T ss_pred             ccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence            556788999999999999999999888766543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=7.3e-30  Score=206.16  Aligned_cols=161  Identities=22%  Similarity=0.230  Sum_probs=148.6

Q ss_pred             CCCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 022605           34 SFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAA  113 (294)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~  113 (294)
                      ..+..+.++++.++..++.+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI  109 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            34566778888888899999999999888888888999999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhh
Q 022605          114 CEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVR  193 (294)
Q Consensus       114 ~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~  193 (294)
                      ..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.                           
T Consensus       110 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~---------------------------  162 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA---------------------------  162 (192)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC---------------------------
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC---------------------------
Confidence            99999999999999999999999999999999999999999999999988643                           


Q ss_pred             cccCCCCCceeeeeecCchhhhHhhhccC
Q 022605          194 KADGITKGSYQVAKWNGTKVWVKILDKES  222 (294)
Q Consensus       194 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~  222 (294)
                       .+..|.|||++|+..|+.+++++|++.+
T Consensus       163 -~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          163 -RDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             -BCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -cCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence             3567889999999999999999998654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=9.4e-30  Score=200.86  Aligned_cols=156  Identities=19%  Similarity=0.221  Sum_probs=144.4

Q ss_pred             CCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q 022605           39 RNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHV  118 (294)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~  118 (294)
                      +.+.++.++..++.+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT   82 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            45677888889999999999988888888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCC
Q 022605          119 EVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGI  198 (294)
Q Consensus       119 ~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~  198 (294)
                      +++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..                            +..
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----------------------------~~~  134 (167)
T 3v31_A           83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE----------------------------TDS  134 (167)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------------------------CTT
T ss_pred             HHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc----------------------------CCC
Confidence            9999999999999999999999999999999999999999999886443                            456


Q ss_pred             CCCceeeeeecCchhhhHhhhccC
Q 022605          199 TKGSYQVAKWNGTKVWVKILDKES  222 (294)
Q Consensus       199 ~~t~l~~A~~~g~~~~v~~Ll~~~  222 (294)
                      |.|||++|+..|+.+++++|++.+
T Consensus       135 g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A          135 GYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHHH
Confidence            889999999999999999998664

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=1.4e-29  Score=193.27  Aligned_cols=131  Identities=24%  Similarity=0.274  Sum_probs=121.8

Q ss_pred             CCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCC-CCCHH
Q 022605           64 LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRW-GSTAA  142 (294)
Q Consensus        64 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~-g~t~L  142 (294)
                      .....+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++..|.. |+|||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            345677889999999999999999999999999999999999999999999 9999999999999999999999 99999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccC
Q 022605          143 ADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKES  222 (294)
Q Consensus       143 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~  222 (294)
                      |+|+..|+.+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++.|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~----------------------------d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGARLDVC----------------------------DAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCCCCCC----------------------------SSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCcc----------------------------CCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999999999887543                            557889999999999999999999877


Q ss_pred             C
Q 022605          223 H  223 (294)
Q Consensus       223 ~  223 (294)
                      +
T Consensus       135 a  135 (136)
T 1d9s_A          135 G  135 (136)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.1e-30  Score=223.18  Aligned_cols=182  Identities=18%  Similarity=0.092  Sum_probs=162.6

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCC-CCCCCCCCCCCHHHHHH--
Q 022605           72 STMQLLFMACRGDVKGVEDLLNEGSD--VNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGSTAAADAK--  146 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~~~~g~t~L~~A~--  146 (294)
                      ..+++|.|+..|+.+.++.+++.+.+  +|.+|..|+||||+|+..|+.++|++|+++|+ +++..+..|+||||+|+  
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            45778999999999999999988766  89999999999999999999999999999998 99999999999999999  


Q ss_pred             ---HcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCC
Q 022605          147 ---YYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESH  223 (294)
Q Consensus       147 ---~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~  223 (294)
                         ..++.+++++|++.|.+++.                            .+..|.||||+|+..|+.++|++|++.|+
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~~~----------------------------~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga  207 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNINAK----------------------------ASQAGQTALMLAVSHGRVDVVKALLACEA  207 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTTCC----------------------------CTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HhhhhhhHHHHHHHHHcCCCccc----------------------------cCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence               56889999999999865432                            24568899999999999999999999998


Q ss_pred             CChHhhhhhhhHHHHHHHcCCCchhhhhhh-hcCCCCeEEEEecCCCCCCCcccccccccccccccC
Q 022605          224 KDPERINAFTHELTIVEKARHPNVVQFVGA-VTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       224 ~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~-~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~~  289 (294)
                      +....+..|.||||+|+..|+.+++++|.. .+.+        ....+..|.||||+|+.+++..++
T Consensus       208 d~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad--------~~~~d~~g~TpL~~A~~~g~~~iv  266 (276)
T 4hbd_A          208 DVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD--------ISLTDRDGSTALMVALDAGQSEIA  266 (276)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC--------TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC--------CcCcCCCCCCHHHHHHHcCCHHHH
Confidence            888888899999999999999999999998 6765        344678899999999999987653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=1.8e-29  Score=197.34  Aligned_cols=144  Identities=22%  Similarity=0.201  Sum_probs=117.6

Q ss_pred             CCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCC-HHHH
Q 022605           66 VPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST-AAAD  144 (294)
Q Consensus        66 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t-~L~~  144 (294)
                      ...+..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+ .|+.+++++|+++|++++..|..|+| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            345677899999999999999999999999999999999999999995 99999999999999999999999999 9999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCC
Q 022605          145 AKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHK  224 (294)
Q Consensus       145 A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~  224 (294)
                      |+..|+.+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++.|+.
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~----------------------------d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~  136 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVR----------------------------DAWGRLPVDLAEELGHRDVARYLRAAAGG  136 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCC----------------------------CTTCCCHHHHHHHHTCHHHHHHHSSCC--
T ss_pred             HHHCCCHHHHHHHHHcCCCCccc----------------------------CCCCCCHHHHHHHhCHHHHHHHHHHcCCC
Confidence            99999999999999999887543                            45688999999999999999999999988


Q ss_pred             ChHhhhhhhhHHHH
Q 022605          225 DPERINAFTHELTI  238 (294)
Q Consensus       225 ~~~~~~~~~t~l~~  238 (294)
                      ....+..|.||.+-
T Consensus       137 ~~~~~~~g~t~~~~  150 (156)
T 1bi7_B          137 TRGSNHARIDAAEG  150 (156)
T ss_dssp             --------------
T ss_pred             CCccCcCcCccccc
Confidence            88877888887663

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=1.3e-29  Score=197.33  Aligned_cols=148  Identities=27%  Similarity=0.293  Sum_probs=132.6

Q ss_pred             ccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 022605           42 MRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVV  121 (294)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v  121 (294)
                      .++.++..++.+.++.++..+.... .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus         5 ~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   83 (153)
T 1awc_B            5 KLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIV   83 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHH
Confidence            4556667777788877777665443 578899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCC
Q 022605          122 KLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKG  201 (294)
Q Consensus       122 ~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t  201 (294)
                      ++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..                            +..|.|
T Consensus        84 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~----------------------------~~~g~t  135 (153)
T 1awc_B           84 EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ----------------------------SKFCKT  135 (153)
T ss_dssp             HHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------------------------CTTSCC
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc----------------------------CCCCCC
Confidence            9999999999999999999999999999999999999999886432                            556789


Q ss_pred             ceeeeeecCchhhhHhh
Q 022605          202 SYQVAKWNGTKVWVKIL  218 (294)
Q Consensus       202 ~l~~A~~~g~~~~v~~L  218 (294)
                      |||+|+..|+.+++++|
T Consensus       136 ~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          136 AFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999887

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=1.7e-28  Score=187.34  Aligned_cols=129  Identities=32%  Similarity=0.422  Sum_probs=116.9

Q ss_pred             CCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 022605           66 VPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA  145 (294)
Q Consensus        66 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A  145 (294)
                      ......+.||||+||..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus         8 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A            8 HHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             ----CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CcccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccC
Q 022605          146 KYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKES  222 (294)
Q Consensus       146 ~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~  222 (294)
                      +..|+.+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++.|
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~~~----------------------------~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVNAQ----------------------------DKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCC----------------------------CTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHcCCCCcCc----------------------------CCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999886433                            556889999999999999999998654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=5.1e-29  Score=194.35  Aligned_cols=151  Identities=21%  Similarity=0.214  Sum_probs=134.4

Q ss_pred             CccccccCCCCCccccCCCCC-CCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHH
Q 022605           41 NMRFSFGRQSSLDPIRRSPVQ-DELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVE  119 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~  119 (294)
                      +.++.++..++.+.++.++.. .......+..|.||||+ |..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   82 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            345667777888888888776 22556678889999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCC
Q 022605          120 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGIT  199 (294)
Q Consensus       120 ~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~  199 (294)
                      ++++|+++|++++..|..|+||||+|+..|+.+++++|++. ++++.                            .+..|
T Consensus        83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~----------------------------~~~~g  133 (156)
T 1bd8_A           83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR----------------------------RDARG  133 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC----------------------------CCTTS
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC----------------------------cCCCC
Confidence            99999999999999999999999999999999999999987 65533                            35678


Q ss_pred             CCceeeeeecCchhhhHhhhcc
Q 022605          200 KGSYQVAKWNGTKVWVKILDKE  221 (294)
Q Consensus       200 ~t~l~~A~~~g~~~~v~~Ll~~  221 (294)
                      .||||+|+..|+.+++++|++.
T Consensus       134 ~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          134 LTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCHHHHHHHcCcHHHHHHHHhh
Confidence            8999999999999999999854

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=1.2e-28  Score=198.44  Aligned_cols=155  Identities=14%  Similarity=0.098  Sum_probs=128.2

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCcH----HHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 022605           72 STMQLLFMACRGDVKGVEDLLNEGSDVNSID-LDGRTALHIAACEGHV----EVVKLLLSKKANIDARDRWGSTAAADAK  146 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~g~TpLh~A~~~g~~----~~v~~Ll~~gad~~~~~~~g~t~L~~A~  146 (294)
                      +.++|+.||..|+.+.++.+++.+.  +.++ ..|+||||+|+..|+.    +++++|+++|+|+|.+|..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            5678999999999999999998774  4455 7799999999999975    5999999999999999999999999999


Q ss_pred             HcCC------HHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCC-Cceeeeeec-----Cchhh
Q 022605          147 YYGN------VEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITK-GSYQVAKWN-----GTKVW  214 (294)
Q Consensus       147 ~~g~------~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~-t~l~~A~~~-----g~~~~  214 (294)
                      ..++      .+++++|+++|+++|..                            +..|. ||||+|+..     ++.++
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~----------------------------d~~g~ttpLh~A~~~~~~~~~~~~i  135 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITAL----------------------------YKPYKIVVFKNIFNYFVDENEMIPL  135 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSC----------------------------BGGGTBCTTGGGGGCCSCHHHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCcc----------------------------CCCcCchHHHHHHHcCCChhhHHHH
Confidence            9987      57899999999998765                            23344 455555442     34568


Q ss_pred             hHhhhc-cCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcC
Q 022605          215 VKILDK-ESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ  256 (294)
Q Consensus       215 v~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~  256 (294)
                      +++|++ .|++....+..|.||+|+|++.++.++|++|.....
T Consensus       136 v~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          136 YKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             HHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence            888888 787777777888899999999999999998876543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=1.4e-27  Score=178.81  Aligned_cols=125  Identities=38%  Similarity=0.495  Sum_probs=117.4

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  150 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  150 (294)
                      +|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCC
Q 022605          151 VEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESH  223 (294)
Q Consensus       151 ~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~  223 (294)
                      .+++++|+++|++++.                            .+..|.|||++|+..|+.+++++|++.|+
T Consensus        81 ~~~~~~Ll~~g~~~~~----------------------------~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNA----------------------------KDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HHHHHHHHHTTCCTTC----------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCCcc----------------------------cCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            9999999999887643                            24567899999999999999999998875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=1.4e-27  Score=182.36  Aligned_cols=127  Identities=28%  Similarity=0.342  Sum_probs=110.9

Q ss_pred             CCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 022605           67 PENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  146 (294)
Q Consensus        67 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~  146 (294)
                      ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhcc
Q 022605          147 YYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKE  221 (294)
Q Consensus       147 ~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~  221 (294)
                      ..|+.+++++|+++|++++..                            +..|.|||++|+..+..+++++|.+.
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~----------------------------~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAV----------------------------NIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCC----------------------------CTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HcCCHHHHHHHHHcCCCCCCC----------------------------CCCCCCHHHHHhhccHHHHHhhcccc
Confidence            999999999999999987543                            34456666666666666666665533

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.95  E-value=1.2e-28  Score=197.83  Aligned_cols=135  Identities=27%  Similarity=0.299  Sum_probs=113.4

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHH
Q 022605           69 NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD-RWGSTAAADAKY  147 (294)
Q Consensus        69 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~-~~g~t~L~~A~~  147 (294)
                      +..|.||||+|+..|+.+++++|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            5678999999999999999999999 99999999999999999999999999999999999999998 899999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCC---CCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhh
Q 022605          148 YGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILD  219 (294)
Q Consensus       148 ~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll  219 (294)
                      .|+.+++++|+++|++++..   |+||||+|+...               ....+.++|++|+..|+.+++++|.
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~---------------~~~~~~~~l~~a~~~~~~~i~~~L~  179 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREIL---------------KTTPKGNPMQFGRRIGLEKVINVLE  179 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH---------------HTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc---------------cCcccccHHHHHHHcCHHHHHHHHH
Confidence            99999999999999998543   667766664311               1123345666666666666666554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=4.5e-27  Score=176.13  Aligned_cols=111  Identities=29%  Similarity=0.414  Sum_probs=101.3

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 022605           69 NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY  148 (294)
Q Consensus        69 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~  148 (294)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCC---CCCCccccCCCC
Q 022605          149 GNVEVYNILKARGAKVPKT---KRTPMTVANPRE  179 (294)
Q Consensus       149 g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~~  179 (294)
                      |+.+++++|+++|++++..   |+||+++|...+
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHH
Confidence            9999999999999998544   777777775543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=9e-28  Score=183.24  Aligned_cols=134  Identities=19%  Similarity=0.224  Sum_probs=124.4

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccc
Q 022605           95 GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTV  174 (294)
Q Consensus        95 g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~  174 (294)
                      +++++.++..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+. |+.+++++|+++|++++..       
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-------   73 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA-------   73 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCC-------
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCc-------
Confidence            47899999999999999999999999999999999999999999999999999 9999999999999887543       


Q ss_pred             cCCCCCcccccCcchhhhhcccCC-CCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhh
Q 022605          175 ANPREVPEYELNPLELQVRKADGI-TKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGA  253 (294)
Q Consensus       175 a~~~~~~~~l~~~~~~~~~~~~~~-~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~  253 (294)
                                           +.. |.||||+|+..|+.+++++|++.+......+..|.||+++|+..++.+++++|..
T Consensus        74 ---------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~  132 (136)
T 1d9s_A           74 ---------------------DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA  132 (136)
T ss_dssp             ---------------------BTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHH
T ss_pred             ---------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                 445 7899999999999999999999998887778899999999999999999999988


Q ss_pred             hcCC
Q 022605          254 VTQN  257 (294)
Q Consensus       254 ~~~~  257 (294)
                      .+++
T Consensus       133 ~Gad  136 (136)
T 1d9s_A          133 ATGD  136 (136)
T ss_dssp             HHCC
T ss_pred             cCCC
Confidence            7763

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=1.4e-27  Score=200.42  Aligned_cols=137  Identities=27%  Similarity=0.297  Sum_probs=118.7

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHH
Q 022605           69 NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD-RWGSTAAADAKY  147 (294)
Q Consensus        69 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~-~~g~t~L~~A~~  147 (294)
                      +..|.||||+||..|+.++|++|++ |+++|.+|..|+||||+||..|+.++|++|+++|++++..+ ..|+||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            4579999999999999999999999 99999999999999999999999999999999999999998 889999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCC---CCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhcc
Q 022605          148 YGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKE  221 (294)
Q Consensus       148 ~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~  221 (294)
                      .|+.+++++|+++|++++..   |+||||+|+..               .....+.|||++|+..|+.+++++|++.
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~---------------~~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELAREI---------------LKTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH---------------HTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH---------------HhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            99999999999999998644   78888877531               1123456777777777777777777654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=1.8e-28  Score=197.37  Aligned_cols=151  Identities=15%  Similarity=0.105  Sum_probs=128.2

Q ss_pred             CccccccCCCCCccccCCCCCCCCCCCCC-CCchhHHHHHHHcCCH----HHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 022605           41 NMRFSFGRQSSLDPIRRSPVQDELTVPEN-LDSTMQLLFMACRGDV----KGVEDLLNEGSDVNSIDLDGRTALHIAACE  115 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~  115 (294)
                      ..+|.+++.|+.+.+..++..+.  ...+ ..|+||||+|+.+|+.    +++++||++|+++|.+|..|+||||+|+..
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~   85 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG   85 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            45677888888887766654432  2233 6799999999999985    599999999999999999999999999998


Q ss_pred             Cc------HHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcC-----CHHHHHHHHH-CCCCCCCCCCCCccccCCCCCcc
Q 022605          116 GH------VEVVKLLLSKKANIDARDRWGS-TAAADAKYYG-----NVEVYNILKA-RGAKVPKTKRTPMTVANPREVPE  182 (294)
Q Consensus       116 g~------~~~v~~Ll~~gad~~~~~~~g~-t~L~~A~~~g-----~~~~v~~Ll~-~ga~~~~~~~t~l~~a~~~~~~~  182 (294)
                      |+      .+++++|+++|+|+|.+|..|+ ||||+|+..+     +.+++++|++ +|++++..               
T Consensus        86 ~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~---------------  150 (186)
T 3t8k_A           86 GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK---------------  150 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCC---------------
T ss_pred             CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCccc---------------
Confidence            87      6899999999999999999999 9999999954     3569999999 89887554               


Q ss_pred             cccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhcc
Q 022605          183 YELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKE  221 (294)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~  221 (294)
                                   +..|.||||+|+..|+.++|++|.+.
T Consensus       151 -------------d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          151 -------------DKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             -------------CTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             -------------CCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence                         66788999999999999999998744

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.94  E-value=5.9e-26  Score=161.57  Aligned_cols=93  Identities=42%  Similarity=0.582  Sum_probs=89.6

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  150 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  150 (294)
                      +|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCC
Q 022605          151 VEVYNILKARGAK  163 (294)
Q Consensus       151 ~~~v~~Ll~~ga~  163 (294)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999985

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=1.1e-26  Score=191.86  Aligned_cols=134  Identities=22%  Similarity=0.290  Sum_probs=112.9

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCCCHHHHHH
Q 022605           68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDARDRWGSTAAADAK  146 (294)
Q Consensus        68 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~~~~g~t~L~~A~  146 (294)
                      .+..|.||||+||..|+.++|++|++.|++++.+|..|+||||+||..|+.++|++|+++ |++++..|..|+||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            345688999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCCh
Q 022605          147 YYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDP  226 (294)
Q Consensus       147 ~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~  226 (294)
                      ..|+.+++++|+++|++++..                            +..|.|||++|+..|+.++++.|+..+....
T Consensus       149 ~~~~~~~v~~Ll~~ga~~~~~----------------------------~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGARTDLR----------------------------NIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCSCCC----------------------------CTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             HcCCHHHHHHHHHcCCCCccc----------------------------cCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence            999999999999999987543                            5567889999999999999999987776554


Q ss_pred             Hhh
Q 022605          227 ERI  229 (294)
Q Consensus       227 ~~~  229 (294)
                      ..+
T Consensus       201 ~~~  203 (222)
T 3ehr_A          201 LSN  203 (222)
T ss_dssp             ---
T ss_pred             ccc
Confidence            433

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=1.3e-28  Score=218.67  Aligned_cols=176  Identities=14%  Similarity=0.034  Sum_probs=137.8

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHhcCCCC---CCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC---CCCCCCCCCH
Q 022605           68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSDV---NSIDLDGRTALHIAACEGHVEVVKLLLSKKANI---DARDRWGSTA  141 (294)
Q Consensus        68 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~---~~~~~~g~t~  141 (294)
                      .+.++.||||+||..|+.++|++|+++|++.   +..+..|.||||+||..|+.++|++|+++|+|+   +..+.+ +||
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp  166 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA  166 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence            3456789999999999999999999999732   234557889999999999999999999999863   222333 899


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeee-ecCchhhhHhhhc
Q 022605          142 AADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAK-WNGTKVWVKILDK  220 (294)
Q Consensus       142 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~-~~g~~~~v~~Ll~  220 (294)
                      ||+|+..|+.++|++|+++|++++.                          ...+..|.||||+|+ .+|+.++|++|++
T Consensus       167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~--------------------------~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~  220 (376)
T 2aja_A          167 FRLAAENGHLHVLNRLCELAPTEAT--------------------------AMIQAENYYAFRWAAVGRGHHNVINFLLD  220 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHH--------------------------HHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccch--------------------------hccCCCCCCHHHHHHHHCCCHHHHHHHHh
Confidence            9999999999999999999887421                          112334678999999 9999999999997


Q ss_pred             cCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccccccccC
Q 022605          221 ESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       221 ~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~~  289 (294)
                      .+       ..+.||+++|+..|+.+++++|...+.+..            ...++++.|+.+|+..++
T Consensus       221 ~g-------a~~~taL~~Aa~~g~~evv~lL~~~ga~~~------------~~~~~l~~A~~~g~~~vv  270 (376)
T 2aja_A          221 CP-------VMLAYAEIHEFEYGEKYVNPFIARHVNRLK------------EMHDAFKLSNPDGVFDLV  270 (376)
T ss_dssp             SH-------HHHHHHHHCTTTTTTTTHHHHHHHHHHHHH------------HHHTTTTTTSSSSCCCCS
T ss_pred             CC-------CccchHHHHHHHCCCHHHHHHHHhcCcccc------------cccHHHHHHHHCCChhhh
Confidence            54       237899999999999999999988776421            123578888888887755

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=6.8e-30  Score=226.91  Aligned_cols=229  Identities=10%  Similarity=-0.000  Sum_probs=160.2

Q ss_pred             CCCccccccCCCCCccccCCCCCCCCC---CCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCC---CCCCCCCCcHHHHH
Q 022605           39 RNNMRFSFGRQSSLDPIRRSPVQDELT---VPENLDSTMQLLFMACRGDVKGVEDLLNEGSDV---NSIDLDGRTALHIA  112 (294)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~~~g~TpLh~A  112 (294)
                      ..+.++.++..|+.+.++.++..+...   ...+..|.||||+||..|+.++|++|+++|+++   +..+.+ .||||+|
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~A  170 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLA  170 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHH
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHH
Confidence            346778888899999999998877632   244567899999999999999999999999762   222333 8999999


Q ss_pred             HHcCcHHHHHHHHhCCCCCCC--CCCCCCCHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCCCccccCCC---CCcccccC
Q 022605          113 ACEGHVEVVKLLLSKKANIDA--RDRWGSTAAADAK-YYGNVEVYNILKARGAKVPKTKRTPMTVANPR---EVPEYELN  186 (294)
Q Consensus       113 ~~~g~~~~v~~Ll~~gad~~~--~~~~g~t~L~~A~-~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~---~~~~~l~~  186 (294)
                      |..|+.++|++|+++|++++.  .|..|+||||+|+ ..|+.++|++|++.|++    +.|||++|+..   +++++|+.
T Consensus       171 a~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~----~~taL~~Aa~~g~~evv~lL~~  246 (376)
T 2aja_A          171 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM----LAYAEIHEFEYGEKYVNPFIAR  246 (376)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH----HHHHHHCTTTTTTTTHHHHHHH
T ss_pred             HHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc----cchHHHHHHHCCCHHHHHHHHh
Confidence            999999999999999999887  8888999999999 99999999999998754    88999999875   45667665


Q ss_pred             cchhhhhcccCCCCCceeeeeecCchhhh------------HhhhccCCCC--------------------hHhhhhhhh
Q 022605          187 PLELQVRKADGITKGSYQVAKWNGTKVWV------------KILDKESHKD--------------------PERINAFTH  234 (294)
Q Consensus       187 ~~~~~~~~~~~~~~t~l~~A~~~g~~~~v------------~~Ll~~~~~~--------------------~~~~~~~~t  234 (294)
                      .+ .+++..    .++++.|+.+|+.+++            +.|+..+...                    ....+.+.+
T Consensus       247 ~g-a~~~~~----~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~  321 (376)
T 2aja_A          247 HV-NRLKEM----HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANE  321 (376)
T ss_dssp             HH-HHHHHH----HTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCH
T ss_pred             cC-cccccc----cHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccH
Confidence            54 233222    2367788888877744            2333222110                    011123568


Q ss_pred             HHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccccccccc
Q 022605          235 ELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHT  288 (294)
Q Consensus       235 ~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~  288 (294)
                      |+++|+..|+.+++++|...+.-           ....+.|++..|-.+|++.+
T Consensus       322 ~L~~A~~~g~~e~v~lLl~~~~v-----------~~~~~~~~~~~~~~~~~~~~  364 (376)
T 2aja_A          322 LLRLALRLGNQGACALLLSIPSV-----------LALTKANNYYINETGGRLDL  364 (376)
T ss_dssp             HHHHHHHHTCTTHHHHHTTSHHH-----------HHSCC---------------
T ss_pred             HHHHHHHcCcHHHHHHHHcChHH-----------HHHHHHhccccccccccccH
Confidence            99999999999999999876432           23445566666666666554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=1.8e-26  Score=199.45  Aligned_cols=141  Identities=18%  Similarity=0.249  Sum_probs=120.2

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhcCCCCCC------CCCCCCcHHHHHHHc---CcHHHHHHHHhCCCCCCCCCCCCCCH
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNS------IDLDGRTALHIAACE---GHVEVVKLLLSKKANIDARDRWGSTA  141 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~------~~~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~~~~g~t~  141 (294)
                      .+.++|+.|+..|+.+.|+.|++.|++++.      .+..|.||||+|+..   |+.+++++|+++|++++..|..|+||
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  229 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            456889999999999999999999999998      689999999999997   89999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhcc
Q 022605          142 AADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKE  221 (294)
Q Consensus       142 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~  221 (294)
                      ||+|+..|+.+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++.
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~~~~----------------------------d~~G~TpL~~A~~~~~~~iv~~Ll~~  281 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALVGTV----------------------------NEAGETALDIARKKHHKECEELLEQA  281 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCCSCC----------------------------CTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCc----------------------------CCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999987543                            45678899999999999999999876


Q ss_pred             CCCChHhhhhhhhHHHHHHHcCCC
Q 022605          222 SHKDPERINAFTHELTIVEKARHP  245 (294)
Q Consensus       222 ~~~~~~~~~~~~t~l~~a~~~~~~  245 (294)
                      ++      +.|.||+|+|++.|+.
T Consensus       282 ga------~~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          282 QA------GTFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HH------HTTSSCCC--------
T ss_pred             cC------CCCCChhHHHHhcCCc
Confidence            54      2578999999988874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=1.4e-26  Score=180.84  Aligned_cols=138  Identities=20%  Similarity=0.221  Sum_probs=118.0

Q ss_pred             CCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc-HHHHHH
Q 022605           35 FDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRT-ALHIAA  113 (294)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~T-pLh~A~  113 (294)
                      .+....+.++.++..++.+.++.++..+......+..|.||||+|+ .|+.+++++|+++|++++.+|..|.| |||+|+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA   86 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            3445677888888999999999999998888888999999999985 99999999999999999999999999 999999


Q ss_pred             HcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCcc
Q 022605          114 CEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMT  173 (294)
Q Consensus       114 ~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~  173 (294)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..   |.||.+
T Consensus        87 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            999999999999999999999999999999999999999999999999998654   666654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=2e-26  Score=175.79  Aligned_cols=134  Identities=21%  Similarity=0.184  Sum_probs=116.4

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccc
Q 022605           95 GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTV  174 (294)
Q Consensus        95 g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~  174 (294)
                      |+|+ .+|..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..       
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-------   72 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT-------   72 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-------
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCc-------
Confidence            6777 67999999999999999999999999999999999999999999999999999999999999876443       


Q ss_pred             cCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhh
Q 022605          175 ANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAV  254 (294)
Q Consensus       175 a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~  254 (294)
                                           +..|.||||+|+..|+.+++++|++.+......+..|.||+++|+..++.+++++|...
T Consensus        73 ---------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           73 ---------------------GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             ---------------------CGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             ---------------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence                                 45578999999999999999999999988888888999999999999999999988665


Q ss_pred             cCC
Q 022605          255 TQN  257 (294)
Q Consensus       255 ~~~  257 (294)
                      ...
T Consensus       132 ~~s  134 (137)
T 3c5r_A          132 ESS  134 (137)
T ss_dssp             ---
T ss_pred             ccC
Confidence            443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=1.2e-25  Score=171.32  Aligned_cols=126  Identities=28%  Similarity=0.366  Sum_probs=117.1

Q ss_pred             CCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 022605           36 DPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACE  115 (294)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~  115 (294)
                      .+...+.++.++..++.+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34455667788889999999999998888888899999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Q 022605          116 GHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG  161 (294)
Q Consensus       116 g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  161 (294)
                      |+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999986

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=6.6e-25  Score=164.20  Aligned_cols=125  Identities=33%  Similarity=0.419  Sum_probs=116.2

Q ss_pred             CCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q 022605           39 RNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHV  118 (294)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~  118 (294)
                      +.+.++.++..++.+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   81 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence            34566677778888888888888777778889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Q 022605          119 EVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK  163 (294)
Q Consensus       119 ~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  163 (294)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        82 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           82 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999986

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=3.3e-25  Score=191.47  Aligned_cols=136  Identities=20%  Similarity=0.168  Sum_probs=118.4

Q ss_pred             CccccccCCCCCccccCCCCCCCCCCC------CCCCchhHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 022605           41 NMRFSFGRQSSLDPIRRSPVQDELTVP------ENLDSTMQLLFMACR---GDVKGVEDLLNEGSDVNSIDLDGRTALHI  111 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~  111 (294)
                      +.++.++..++.+.+..++..+.....      .+..|.||||+|+..   |+.++|++|+++|+++|.+|..|+||||+
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~  232 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY  232 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            346777788888888888777766655      588999999999997   89999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCC
Q 022605          112 AACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPRE  179 (294)
Q Consensus       112 A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~  179 (294)
                      |+..|+.++|++|+++|+|++.+|..|.||||+|+..|+.+++++|+++|++   .|.||||+|+..+
T Consensus       233 A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---~g~tpLh~A~~~g  297 (301)
T 2b0o_E          233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---TFAFPLHVDYSWV  297 (301)
T ss_dssp             HHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---TTSSCCC------
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---CCCChhHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999877   4678888776543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=1.8e-24  Score=191.37  Aligned_cols=147  Identities=20%  Similarity=0.233  Sum_probs=117.5

Q ss_pred             CCCCchhHHHHHHHc-CCHHHHHHHHhcCCCCCCCC--CCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 022605           68 ENLDSTMQLLFMACR-GDVKGVEDLLNEGSDVNSID--LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD  144 (294)
Q Consensus        68 ~~~~g~t~L~~Aa~~-g~~~~v~~Ll~~g~~~~~~~--~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~  144 (294)
                      ....+.|+||.|+.. |+.++|++|+++|+++|..+  ..|.||||+|+..|+.++|++|+++|++++..|..|+||||+
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~  274 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH  274 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            345678999999999 99999999999999999988  889999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCC
Q 022605          145 AKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHK  224 (294)
Q Consensus       145 A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~  224 (294)
                      |+..|+.+++++|+++|++++..                            +..|.||||+|+..|+.+++++|+..+..
T Consensus       275 A~~~g~~~~v~~LL~~Gad~~~~----------------------------d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADLGAR----------------------------DSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCC----------------------------CTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHcCcHHHHHHHHHCcCCCCCc----------------------------CCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999987543                            56788999999999999999999866543


Q ss_pred             Ch---HhhhhhhhHHHHHHHc
Q 022605          225 DP---ERINAFTHELTIVEKA  242 (294)
Q Consensus       225 ~~---~~~~~~~t~l~~a~~~  242 (294)
                      ..   .....+.|+++++...
T Consensus       327 ~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          327 EAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             ---------------------
T ss_pred             cccccccCCCCCCHHHHHHHH
Confidence            22   2223445666655443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.91  E-value=1.4e-24  Score=160.51  Aligned_cols=105  Identities=39%  Similarity=0.521  Sum_probs=97.6

Q ss_pred             CCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 022605           67 PENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  146 (294)
Q Consensus        67 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~  146 (294)
                      ..|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCC---CCCC
Q 022605          147 YYGNVEVYNILKARGAKVPKT---KRTP  171 (294)
Q Consensus       147 ~~g~~~~v~~Ll~~ga~~~~~---~~t~  171 (294)
                      ..++.+++++|+++|+++|..   +.+|
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            999999999999999998533   5544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=2.4e-23  Score=177.81  Aligned_cols=126  Identities=20%  Similarity=0.204  Sum_probs=113.9

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhcCCCC------CCCCCCCCcHHHHHHHc---CcHHHHHHHHhCCCCCCCCCCCCCCH
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNEGSDV------NSIDLDGRTALHIAACE---GHVEVVKLLLSKKANIDARDRWGSTA  141 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~------~~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~~~~g~t~  141 (294)
                      ...++|+.|+..|+.+.++.+++.|+++      +..|..|.||||+|+..   |+.+++++|+++|+++|..|..|+||
T Consensus       129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~Tp  208 (278)
T 1dcq_A          129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCH
T ss_pred             hhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCH
Confidence            3468999999999999999999999984      45578899999999999   89999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhcc
Q 022605          142 AADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKE  221 (294)
Q Consensus       142 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~  221 (294)
                      ||+|+..|+.+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++.
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~~~~----------------------------d~~g~tpL~~A~~~~~~~~v~~Ll~~  260 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASIEIA----------------------------NESGETPLDIAKRLKHEHCEELLTQA  260 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCC----------------------------CTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCc----------------------------cCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999999999987543                            56788999999999999999999977


Q ss_pred             CCC
Q 022605          222 SHK  224 (294)
Q Consensus       222 ~~~  224 (294)
                      ++.
T Consensus       261 ga~  263 (278)
T 1dcq_A          261 LSG  263 (278)
T ss_dssp             HTT
T ss_pred             CCC
Confidence            763

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=1.1e-23  Score=179.99  Aligned_cols=130  Identities=18%  Similarity=0.126  Sum_probs=111.4

Q ss_pred             ccccCCCCCccccCCCCCCCC------CCCCCCCchhHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 022605           44 FSFGRQSSLDPIRRSPVQDEL------TVPENLDSTMQLLFMACR---GDVKGVEDLLNEGSDVNSIDLDGRTALHIAAC  114 (294)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~  114 (294)
                      +.+...++.+.+..++..+..      ....+..|.||||+||..   |+.++|++|+++|+++|.+|..|+||||+|+.
T Consensus       135 ~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~  214 (278)
T 1dcq_A          135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL  214 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHH
T ss_pred             hhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHH
Confidence            444555666666555554444      334478899999999999   89999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCC
Q 022605          115 EGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPR  178 (294)
Q Consensus       115 ~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~  178 (294)
                      .|+.++|++|+++|+|++.+|..|.||||+|+..|+.+++++|+++|++     .+++|.+...
T Consensus       215 ~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-----~~~~~~~v~~  273 (278)
T 1dcq_A          215 TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG-----RFNSHVHVEY  273 (278)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT-----CCCSSCCCCC
T ss_pred             cCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCcceeeec
Confidence            9999999999999999999999999999999999999999999999885     4666666543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=6.3e-24  Score=158.90  Aligned_cols=113  Identities=27%  Similarity=0.228  Sum_probs=102.6

Q ss_pred             CCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 022605           36 DPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACE  115 (294)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~  115 (294)
                      +....+.++.++..++.+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34455677788888999999999988888888899999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 022605          116 GHVEVVKLLLSKKANIDARDRWGSTAAADAKYY  148 (294)
Q Consensus       116 g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~  148 (294)
                      |+.+++++|+++|++++..|..|.||||+|...
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence            999999999999999999999999999999443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=4.4e-24  Score=176.17  Aligned_cols=142  Identities=15%  Similarity=0.167  Sum_probs=112.5

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCccccCCCC
Q 022605          101 IDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKAR-GAKVPKTKRTPMTVANPRE  179 (294)
Q Consensus       101 ~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~t~l~~a~~~~  179 (294)
                      .+..|.||||+||..|+.++|++|++.|++++..|..|+||||+|+..|+.+++++|++. |++++..            
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~------------  136 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ------------  136 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCC------------
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcccc------------
Confidence            367789999999999999999999999999999999999999999999999999999998 8776443            


Q ss_pred             CcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCC
Q 022605          180 VPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP  259 (294)
Q Consensus       180 ~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~  259 (294)
                                      +..|.||||+|+..|+.++|++|++.|+.....+..|.||+++|+..++.++++.|...+....
T Consensus       137 ----------------d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          137 ----------------NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             ----------------CTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             ----------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence                            5568899999999999999999999998888888899999999999999999999998888776


Q ss_pred             eEEEEecCCCC
Q 022605          260 MMIVLEYHAKV  270 (294)
Q Consensus       260 l~~~~e~~~~g  270 (294)
                      +.-..+|....
T Consensus       201 ~~~~~~~l~~~  211 (222)
T 3ehr_A          201 LSNAEDYLDDE  211 (222)
T ss_dssp             -----------
T ss_pred             ccchhhhcccc
Confidence            65555555443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.88  E-value=4.6e-22  Score=145.91  Aligned_cols=93  Identities=39%  Similarity=0.487  Sum_probs=86.5

Q ss_pred             CCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 022605           65 TVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD  144 (294)
Q Consensus        65 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~  144 (294)
                      ....+.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHH
Q 022605          145 AKYYGNVEVYNIL  157 (294)
Q Consensus       145 A~~~g~~~~v~~L  157 (294)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999999987

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=3.2e-22  Score=142.07  Aligned_cols=92  Identities=39%  Similarity=0.519  Sum_probs=84.1

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCccc
Q 022605          104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEY  183 (294)
Q Consensus       104 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~  183 (294)
                      +|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..                
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~----------------   64 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK----------------   64 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------------
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc----------------
Confidence            4899999999999999999999999999999999999999999999999999999999887443                


Q ss_pred             ccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCC
Q 022605          184 ELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESH  223 (294)
Q Consensus       184 l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~  223 (294)
                                  +..|.||||+|+..|+.+++++|++.|+
T Consensus        65 ------------d~~g~t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           65 ------------DKNGRTPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             ------------CTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ------------CCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence                        5568899999999999999999998775

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=3e-22  Score=167.76  Aligned_cols=109  Identities=28%  Similarity=0.288  Sum_probs=101.4

Q ss_pred             CCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcC
Q 022605           38 RRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSID-LDGRTALHIAACEG  116 (294)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~g~TpLh~A~~~g  116 (294)
                      .+.+.++.++..++.+.++.++. +...+..+..|.||||+||..|+.++|++|+++|+++|.++ ..|+||||+|+..|
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            44567788888999999999998 77778889999999999999999999999999999999998 88999999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 022605          117 HVEVVKLLLSKKANIDARDRWGSTAAADAKY  147 (294)
Q Consensus       117 ~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~  147 (294)
                      +.++|++|+++|++++..|..|+||||+|+.
T Consensus       123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          123 RPEVVEALVELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            9999999999999999999999999999984

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=5.5e-22  Score=175.45  Aligned_cols=122  Identities=25%  Similarity=0.308  Sum_probs=112.9

Q ss_pred             ccccccCC-CCCccccCCCCCCCCCCCCC--CCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q 022605           42 MRFSFGRQ-SSLDPIRRSPVQDELTVPEN--LDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHV  118 (294)
Q Consensus        42 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~  118 (294)
                      .++.++.. ++.+.++.++..+...+..+  ..|.||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+..|+.
T Consensus       202 ~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~  281 (368)
T 3jue_A          202 LLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHT  281 (368)
T ss_dssp             HHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcH
Confidence            55666777 88888988888888777776  8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Q 022605          119 EVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK  163 (294)
Q Consensus       119 ~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  163 (294)
                      ++|++|+++|++++..|..|.||||+|+..|+.+++++|+..+..
T Consensus       282 ~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999988644

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=4.2e-22  Score=159.46  Aligned_cols=112  Identities=28%  Similarity=0.267  Sum_probs=102.9

Q ss_pred             CCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcC
Q 022605           38 RRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSID-LDGRTALHIAACEG  116 (294)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~g~TpLh~A~~~g  116 (294)
                      .+.+.++.++..++.+.++.++. +......+..|.||||+|+..|+.++|++|+++|+++|.++ ..|+||||+|+..|
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~  121 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  121 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcC
Confidence            44567788888899999998888 77778889999999999999999999999999999999998 88999999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 022605          117 HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  150 (294)
Q Consensus       117 ~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  150 (294)
                      +.+++++|+++|++++.+|..|+||||+|+..++
T Consensus       122 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~  155 (183)
T 3deo_A          122 RPEVVEALVELGADIEVEDERGLTALELAREILK  155 (183)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc
Confidence            9999999999999999999999999999987643

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=2.4e-21  Score=142.91  Aligned_cols=109  Identities=36%  Similarity=0.374  Sum_probs=95.6

Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCC
Q 022605          100 SIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPRE  179 (294)
Q Consensus       100 ~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~  179 (294)
                      .+|.+|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..++.+++++|+++|++++..            
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~------------   71 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR------------   71 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCC------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCccc------------
Confidence            46889999999999999999999999999999999999999999999999999999999999876432            


Q ss_pred             CcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHH
Q 022605          180 VPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHEL  236 (294)
Q Consensus       180 ~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l  236 (294)
                                      +..|.||||+|+..|+.+++++|++.|++.......+.+|-
T Consensus        72 ----------------d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           72 ----------------SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             ----------------CTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             ----------------CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence                            45678999999999999999999998877766666666653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=2.9e-19  Score=130.89  Aligned_cols=93  Identities=29%  Similarity=0.371  Sum_probs=81.4

Q ss_pred             CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCC
Q 022605           98 VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANP  177 (294)
Q Consensus        98 ~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~  177 (294)
                      +...|.+|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..          
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~----------   86 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ----------   86 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc----------
Confidence            3456789999999999999999999999999999999999999999999999999999999999887443          


Q ss_pred             CCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhh
Q 022605          178 REVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKIL  218 (294)
Q Consensus       178 ~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~L  218 (294)
                                        +..|.||||+|+..|+.+++++|
T Consensus        87 ------------------d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           87 ------------------DKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             ------------------CTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ------------------ccCCCcHHHHHHHcCCHHHHHHh
Confidence                              55678899999999999999876

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=94.59  E-value=0.015  Score=49.48  Aligned_cols=78  Identities=24%  Similarity=0.412  Sum_probs=54.4

Q ss_pred             ccCCCC-CceeeeeecC-------chhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEec
Q 022605          195 ADGITK-GSYQVAKWNG-------TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY  266 (294)
Q Consensus       195 ~~~~~~-t~l~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~  266 (294)
                      .-+.|. ...+.|.+.|       ...+||.|...  ........+...+.+..+..|++||++++.+..+.++++++||
T Consensus        33 ~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~--~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~Ey  110 (308)
T 4gt4_A           33 ELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDK--AEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSY  110 (308)
T ss_dssp             EEEECSSCEEEEEEEC-------CEEEEEEECCC---CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             EeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcc--cChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEEEc
Confidence            334443 4456665533       34466766432  2222334567788888999999999999999999999999999


Q ss_pred             CCCCCCCc
Q 022605          267 HAKVSMPI  274 (294)
Q Consensus       267 ~~~g~l~~  274 (294)
                      +.+|+|..
T Consensus       111 ~~~G~L~~  118 (308)
T 4gt4_A          111 CSHGDLHE  118 (308)
T ss_dssp             CSSCBHHH
T ss_pred             CCCCcHHH
Confidence            99999863

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=94.42  E-value=0.02  Score=48.60  Aligned_cols=79  Identities=22%  Similarity=0.379  Sum_probs=55.0

Q ss_pred             hhcccCCCC-Cceeeeeec-------CchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEE
Q 022605          192 VRKADGITK-GSYQVAKWN-------GTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIV  263 (294)
Q Consensus       192 ~~~~~~~~~-t~l~~A~~~-------g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~  263 (294)
                      +...-+.|. ...+.|...       |...+||.|- .  ......+.+...+.+..+..|++||+++..+..+.+++++
T Consensus        17 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~-~--~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV   93 (299)
T 4asz_A           17 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLK-D--ASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMV   93 (299)
T ss_dssp             EEEEEEC--CCCEEEEEECSCC----CEEEEEEEEC-S--CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEE
T ss_pred             EeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeC-C--CChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEE
Confidence            334444443 345555443       3344566653 1  2334445677888888889999999999999988999999


Q ss_pred             EecCCCCCCC
Q 022605          264 LEYHAKVSMP  273 (294)
Q Consensus       264 ~e~~~~g~l~  273 (294)
                      |||+.+|+|.
T Consensus        94 ~Ey~~~G~L~  103 (299)
T 4asz_A           94 FEYMKHGDLN  103 (299)
T ss_dssp             EECCTTCBHH
T ss_pred             EEcCCCCcHH
Confidence            9999999986

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=93.98  E-value=0.022  Score=48.96  Aligned_cols=81  Identities=22%  Similarity=0.345  Sum_probs=56.7

Q ss_pred             hhhcccCCCC-Cceeeeeec-------CchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEE
Q 022605          191 QVRKADGITK-GSYQVAKWN-------GTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMI  262 (294)
Q Consensus       191 ~~~~~~~~~~-t~l~~A~~~-------g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~  262 (294)
                      .+...-+.|. .-.+.|.+.       |...+||.|-.   ......+.+...+.+.....|++||+++..+....++++
T Consensus        44 ~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~---~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l  120 (329)
T 4aoj_A           44 VLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKE---ASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM  120 (329)
T ss_dssp             EEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESC---CSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECc---CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            3334444443 344555443       33456676632   233444567788888889999999999999999999999


Q ss_pred             EEecCCCCCCCc
Q 022605          263 VLEYHAKVSMPI  274 (294)
Q Consensus       263 ~~e~~~~g~l~~  274 (294)
                      +|||+.+|+|..
T Consensus       121 V~Ey~~~G~L~~  132 (329)
T 4aoj_A          121 VFEYMRHGDLNR  132 (329)
T ss_dssp             EEECCTTCBHHH
T ss_pred             EEEcCCCCcHHH
Confidence            999999999863

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=93.56  E-value=0.048  Score=46.35  Aligned_cols=83  Identities=31%  Similarity=0.507  Sum_probs=57.1

Q ss_pred             chhhhhcccCCCC-CceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEec
Q 022605          188 LELQVRKADGITK-GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY  266 (294)
Q Consensus       188 ~~~~~~~~~~~~~-t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~  266 (294)
                      .++.+...-+.|. ...+.|...+. .+||.+- ...........+...+.+..+..|++||+++..+. +..++++|||
T Consensus        36 ~~l~l~~~iG~G~fG~Vy~~~~~~~-vAvK~~~-~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~iVmEy  112 (307)
T 3omv_A           36 SEVMLSTRIGSGSFGTVYKGKWHGD-VAVKILK-VVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQW  112 (307)
T ss_dssp             TSCCEEEECCCCSSSEEEEEESSSE-EEEEECC-CSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCc-EEEEEEE-ecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEEEEEEc
Confidence            3444445555554 44566655553 4566553 23344445566778889999999999999998765 4578999999


Q ss_pred             CCCCCCC
Q 022605          267 HAKVSMP  273 (294)
Q Consensus       267 ~~~g~l~  273 (294)
                      +.+|+|.
T Consensus       113 ~~gGsL~  119 (307)
T 3omv_A          113 CEGSSLY  119 (307)
T ss_dssp             CSSCBHH
T ss_pred             CCCCCHH
Confidence            9999986

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=91.03  E-value=0.089  Score=45.56  Aligned_cols=71  Identities=18%  Similarity=0.331  Sum_probs=52.9

Q ss_pred             ceeeeee--cCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          202 SYQVAKW--NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       202 ~l~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      -.+.|..  .|..-+||.+.... ............+.+.....|++||+++.....+..++++|||+.+|+|.
T Consensus        39 ~V~~a~~~~~~~~vAiK~i~~~~-~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~gg~L~  111 (350)
T 4b9d_A           39 KAILVKSTEDGRQYVIKEINISR-MSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLF  111 (350)
T ss_dssp             CEEEEEETTTCCEEEEEEEECTT-SCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHH
T ss_pred             EEEEEEECCCCCEEEEEEEehHH-CCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHH
Confidence            4455543  35666777764322 33333455677888899999999999999988888999999999999985

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=88.49  E-value=0.17  Score=43.89  Aligned_cols=89  Identities=29%  Similarity=0.375  Sum_probs=54.0

Q ss_pred             cccCcchhhhhcccCCCC-CceeeeeecCc-------hhhhHhhhccCCCChHhhhhhhhHHHHHHHcCC-Cchhhhhhh
Q 022605          183 YELNPLELQVRKADGITK-GSYQVAKWNGT-------KVWVKILDKESHKDPERINAFTHELTIVEKARH-PNVVQFVGA  253 (294)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~-t~l~~A~~~g~-------~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-~~iv~~L~~  253 (294)
                      +.+...++.+...-+.|. .-.+.|...+.       ...||.|. .. ........+...+.+.....| ++||+++..
T Consensus        59 wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~-~~-~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~  136 (353)
T 4ase_A           59 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLK-EG-ATHSEHRALMSELKILIHIGHHLNVVNLLGA  136 (353)
T ss_dssp             HBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEEC-TT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEc-cc-cChHHHHHHHHHHHHHHHcCCCCcEEEEEEE
Confidence            334444444444445453 34566655542       23445443 22 223333455667777666655 899999998


Q ss_pred             hcC-CCCeEEEEecCCCCCCC
Q 022605          254 VTQ-NIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       254 ~~~-~~~l~~~~e~~~~g~l~  273 (294)
                      +.. +.++++++||+.+|+|.
T Consensus       137 ~~~~~~~~~iV~Ey~~~G~L~  157 (353)
T 4ase_A          137 CTKPGGPLMVIVEFCKFGNLS  157 (353)
T ss_dssp             ECCTTSCCEEEEECCTTEEHH
T ss_pred             EEecCCEEEEEEEcCCCCCHH
Confidence            755 45789999999999986

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=87.83  E-value=0.091  Score=44.44  Aligned_cols=69  Identities=29%  Similarity=0.409  Sum_probs=46.5

Q ss_pred             CceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCC----CeEEEEecCCCCCCC
Q 022605          201 GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI----PMMIVLEYHAKVSMP  273 (294)
Q Consensus       201 t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~----~l~~~~e~~~~g~l~  273 (294)
                      ...+.|.+.|...+||.+-..    ..........+.......|++||+++..+..+.    .++++|||+.+|+|.
T Consensus        17 G~Vy~~~~~g~~VAvK~l~~~----~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~   89 (303)
T 3hmm_A           17 GEVWRGKWRGEEVAVKIFSSR----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLF   89 (303)
T ss_dssp             SEEEEEEETTEEEEEEEECGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHH
T ss_pred             eEEEEEEECCEEEEEEEECcc----chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHH
Confidence            456778888887788876321    111112223344444568999999998875442    579999999999986

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=84.52  E-value=0.057  Score=45.99  Aligned_cols=43  Identities=16%  Similarity=0.230  Sum_probs=37.3

Q ss_pred             hhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          231 AFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       231 ~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      .......+.....|++||++......+..++++|||+.+|+|.
T Consensus        78 ~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmEy~~gG~L~  120 (311)
T 4aw0_A           78 YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELL  120 (311)
T ss_dssp             HHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHH
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHH
Confidence            3456777788889999999999988888999999999999885

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=83.53  E-value=0.71  Score=38.75  Aligned_cols=82  Identities=39%  Similarity=0.643  Sum_probs=58.2

Q ss_pred             hhhcccCCCC-CceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCC
Q 022605          191 QVRKADGITK-GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAK  269 (294)
Q Consensus       191 ~~~~~~~~~~-t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~  269 (294)
                      .+...-+.|. ...+.|...|...++|.+... .............+.......|++|++++.........++++||+..
T Consensus        40 ~i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  118 (309)
T 3p86_A           40 NIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQ-DFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSR  118 (309)
T ss_dssp             EEEEEEEECSSEEEEEEEETTEEEEEEEECCC-CCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEECCTT
T ss_pred             eeeeEeecCCCeEEEEEEECCCcEEEEEecCC-CCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEecCCC
Confidence            3333334443 345677677777777776533 23334444556777888888999999999998888889999999999


Q ss_pred             CCCC
Q 022605          270 VSMP  273 (294)
Q Consensus       270 g~l~  273 (294)
                      |++.
T Consensus       119 ~~L~  122 (309)
T 3p86_A          119 GSLY  122 (309)
T ss_dssp             CBHH
T ss_pred             CcHH
Confidence            8875

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=83.03  E-value=0.27  Score=40.92  Aligned_cols=71  Identities=20%  Similarity=0.390  Sum_probs=46.3

Q ss_pred             ceeeeee--cCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          202 SYQVAKW--NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       202 ~l~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      -.+.|..  .|..-++|.+-................+.+.....|++||++......+..++++|||+ .|++.
T Consensus        28 ~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~-~g~L~  100 (275)
T 3hyh_A           28 KVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELF  100 (275)
T ss_dssp             CEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC-CEEHH
T ss_pred             EEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEeCC-CCCHH
Confidence            3444443  35555666664332222233344567788888899999999999888888899999998 46543

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=81.86  E-value=0.44  Score=41.07  Aligned_cols=69  Identities=22%  Similarity=0.288  Sum_probs=49.1

Q ss_pred             ceeeeeec--CchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          202 SYQVAKWN--GTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       202 ~l~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      -.+.|...  |..-+||.+-.....   ........+.+.....|++||+++.....+..++++|||+.+|+|.
T Consensus        89 ~V~~a~~~~tg~~vAiK~i~~~~~~---~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~  159 (346)
T 4fih_A           89 IVCIATVRSSGKLVAVKKMDLRKQQ---RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALT  159 (346)
T ss_dssp             EEEEEEETTTCCEEEEEEEEGGGCS---SGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEHH
T ss_pred             EEEEEEECCCCCEEEEEEEecCchh---HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHH
Confidence            34555443  455566665322211   1233456788888899999999999998888999999999999875

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=81.62  E-value=0.48  Score=42.06  Aligned_cols=69  Identities=22%  Similarity=0.289  Sum_probs=49.3

Q ss_pred             ceeeeeec--CchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          202 SYQVAKWN--GTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       202 ~l~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      -.+.|...  |..-+||.+-....   .........+.+.....|++||+++.....+..++++|||+.+|+|.
T Consensus       166 ~V~~a~~~~tg~~vAiK~i~~~~~---~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~  236 (423)
T 4fie_A          166 IVCIATVRSSGKLVAVKKMDLRKQ---QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALT  236 (423)
T ss_dssp             EEEEEEETTTCCEEEEEEEESTTC---SSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHH
T ss_pred             EEEEEEECCCCCEEEEEEEeccch---hHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCCCcHH
Confidence            34555443  45556666532211   11233457788888999999999999998888999999999999875

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=80.57  E-value=0.35  Score=40.57  Aligned_cols=71  Identities=15%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             ceeeeeecC--chhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcC----CCCeEEEEecCCCCCCC
Q 022605          202 SYQVAKWNG--TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ----NIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       202 ~l~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~----~~~l~~~~e~~~~g~l~  273 (294)
                      -.+.|....  ..-++|.+.... ............+.+.....|++||+++.....    +..++++|||+.+|+|.
T Consensus        41 ~Vy~a~~~~~~~~vAiK~i~~~~-~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~  117 (290)
T 3fpq_A           41 TVYKGLDTETTVEVAWCELQDRK-LTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLK  117 (290)
T ss_dssp             EEEEEEETTTCCEEEEEEEEGGG-SCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHH
T ss_pred             EEEEEEECCCCeEEEEEEEchhh-CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHH
Confidence            455555443  333445543222 233334556778888899999999999976532    34579999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-04
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-09
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	4e-09
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	4e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-07
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-05
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-08
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	3e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-06
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	4e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-04
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	9e-08
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	9e-08
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	9e-08
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	9e-08
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	1e-07
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-07
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-07
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-07
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-07
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-07
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	3e-07
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	5e-07
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	6e-07
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	6e-07
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	6e-07
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	9e-07
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-06
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-06
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-06
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-06
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-06
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-06
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	6e-06
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	6e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	7e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-05
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	7e-06
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-05
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-05
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-05
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-05
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-05
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	3e-05
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	3e-05
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	4e-05
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	4e-05
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	4e-05
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	6e-05
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	8e-05
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	1e-04
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-04
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-04
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-04
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	4e-04
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	8e-04
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	0.001
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	0.001
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	0.002
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	0.002
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	0.003
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	0.003
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (234), Expect = 1e-22
 Identities = 41/180 (22%), Positives = 66/180 (36%), Gaps = 6/180 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L +A   G +  V++LL  G+  N  ++   T LH+AA  GH EV K LL  KA ++A+ 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 63

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVANPREVPEYELNPLEL-- 190
           +   T    A   G+  +  +L    A          TP+ +A      E  L  LE   
Sbjct: 64  KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 123

Query: 191 QVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQF 250
                         VA   G     ++L +               L +     + ++V+ 
Sbjct: 124 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 183

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 6e-17
 Identities = 30/84 (35%), Positives = 46/84 (54%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L   +  G++K V+ LL   +DVN+    G + LH AA +GH ++V LLL   A+ +   
Sbjct: 301 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 360

Query: 136 RWGSTAAADAKYYGNVEVYNILKA 159
             G+T  A AK  G + V ++LK 
Sbjct: 361 SDGTTPLAIAKRLGYISVTDVLKV 384

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 8e-15
 Identities = 33/149 (22%), Positives = 49/149 (32%), Gaps = 5/149 (3%)

Query: 107 TALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV-- 164
           T LH+A+  GH+ +VK LL + A+ +  +    T    A   G+ EV   L    AKV  
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 165 -PKTKRTPMTVA--NPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKE 221
             K  +TP+  A           L         A         +A   G    V  L ++
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 222 SHKDPERINAFTHELTIVEKARHPNVVQF 250
                         L +  K     V + 
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAEL 150

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 8e-14
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 12/208 (5%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L   A +  V+    LL  G   N+  + G T LH+AA EGH E+V LLLSK+AN +  +
Sbjct: 202 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 261

Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTV-------ANPREVPEYELNPL 188
           + G T        G+V V ++L   G  V  T R   T         N + V     +  
Sbjct: 262 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 321

Query: 189 ELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTH-ELTIVEKARHPNV 247
           ++  +   G +      A   G    V +L  ++   P  +++     L I ++  + +V
Sbjct: 322 DVNAKTKLGYS--PLHQAAQQGHTDIVTLL-LKNGASPNEVSSDGTTPLAIAKRLGYISV 378

Query: 248 VQFVGAVTQNIPMMIVLEYHAKVSMPIT 275
              +  VT     ++V + H ++S P T
Sbjct: 379 TDVLKVVTDETSFVLVSDKH-RMSFPET 405

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 4e-13
 Identities = 25/84 (29%), Positives = 37/84 (44%)

Query: 74  MQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 133
             L   A  G V+  E LL   +  N+   +G T LH+A    ++++VKLLL +  +  +
Sbjct: 134 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 193

Query: 134 RDRWGSTAAADAKYYGNVEVYNIL 157
               G T    A     VEV   L
Sbjct: 194 PAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 4e-11
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 95  GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 154
            +    +   G T LH+AA  G V V +LLL + A+ +A  + G T    A ++ N+++ 
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 155 NILKARGAKV---PKTKRTPMTVANPREVPEYELNPLE 189
            +L  RG           TP+ +A  +   E   + L+
Sbjct: 182 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 219

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 1e-17
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 89  EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKY 147
             LL+ G+DVN     G+T L +A  + H+ +V+ LL ++   I+  D  G TA   A  
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262

Query: 148 YGNVEVYNILKARGAKV 164
               ++  +L  RGA  
Sbjct: 263 LKLKKIAELLCKRGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 2e-15
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 76  LLFMACRGDVKGVEDLL-NEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
           L+    +  +  V+ LL  E  ++N  D DG+TAL +A      ++ +LL  + A+ D  
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

Query: 135 D 135
           D
Sbjct: 283 D 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 1e-10
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 75  QLLFMACR-GDVKGVEDLLNEGSDVNSIDLD-GRTALHIAACEGHVEVVKLLLSKKANID 132
            LL  A +  DV  V+ LL  G++VN  + + G T LH A      ++V+LLL   A+  
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 133 ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 173
            R + G+T    A   G+V++  +  ++GA V +      T
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT 107

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 1e-09
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 15/134 (11%)

Query: 98  VNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKYYGNV----E 152
              +   G TAL  AA +GHVEV+K+LL +  A+++A D  G  A   A    +      
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 153 VYNILKARGAKV---PKTKRTPMTVA---NPREVPEY--ELNPLELQVRKADGITKGSYQ 204
           + ++L   GA V    +  +TP+ +A       + +   E   +E+    +DG T  +  
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT--ALL 258

Query: 205 VAKWNGTKVWVKIL 218
           +A     K   ++L
Sbjct: 259 LAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 103 LDGRTALHIAACEGHVEVVKLLLSKKANIDARD-RWGSTAAADAKYYGNVEV 153
           ++    L  A     V++V+ LL   AN++ ++   G T   +A      ++
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI 54

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.8 bits (177), Expect = 2e-15
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 95  GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 154
           GS+ +  D DG+T + +AA EG +EVV  L+ + A+++A D    TA   A+   +  + 
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 270

Query: 155 NIL-KAR 160
           +I  + R
Sbjct: 271 DIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.3 bits (147), Expect = 1e-11
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLL 125
           ++  A  G ++ V  L+ +G+ V ++D    TA  +A    H  +V +  
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.1 bits (144), Expect = 4e-11
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 9/84 (10%)

Query: 80  ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK--------ANI 131
              G     E +  E  ++       RT LH  A     E  + L+  +        A++
Sbjct: 9   EAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 67

Query: 132 DARDRWGSTAAADAKYYGNVEVYN 155
           +A D   +T    A       +  
Sbjct: 68  NAMDCDENTPLMLAVLARRRRLVA 91

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 7e-05
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 78  FMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDR 136
             A     KG +   +  +  +S    GRTALH AA   ++ +VK L+ +K +N D +D 
Sbjct: 160 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 219

Query: 137 WGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
            G T    A   G +EV   L  +GA V     T  T   +A
Sbjct: 220 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 163
           +    LH  A  G   + + +  +  NI    R   T         + E    L    AK
Sbjct: 1   ESPIKLHTEAA-GSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 72.6 bits (177), Expect = 4e-15
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 76  LLFMACR----GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 131
           + F+A        +  +  LL     V  I  +   A  +AA  GH+ V+  L       
Sbjct: 93  ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 152

Query: 132 DARDR--WGSTAAADAKYYGNVEVYNILKARGAKVP 165
                      A   A   G++ V N L        
Sbjct: 153 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 188

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 66.8 bits (162), Expect = 3e-13
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 68  ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGH---VEVVKLL 124
           +N++   QLL   C        +     SD +   +       +AA  G    ++ + LL
Sbjct: 56  KNMEQVRQLL---CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLL 112

Query: 125 LSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPM 172
           L+    +         A   A   G++ V N L               
Sbjct: 113 LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE 160

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.4 bits (122), Expect = 4e-08
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 76  LLFMACRGDVKGVEDLLNEGSD-----VNSIDLDGRTALHIAACEGHVEVVKLLLS 126
           L+       +  +  LL+           +I  D    L +A   G+     LLLS
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 48.3 bits (114), Expect = 4e-07
 Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 6/97 (6%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLD--GRTALHIAACEGHVEVVKLLLSKKANID- 132
             +A   G +  +  L           +      A  +AA  GH+ V+  L         
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 189

Query: 133 --ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT 167
              +          A   G+  V N L      +   
Sbjct: 190 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYA 226

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 10/87 (11%), Positives = 19/87 (21%), Gaps = 10/87 (11%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-----N 130
              ++    V  +                    L     E  ++ ++ LLS         
Sbjct: 255 AFKLSNPDGVFDLVT-----KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 309

Query: 131 IDARDRWGSTAAADAKYYGNVEVYNIL 157
                   +     A   GN     +L
Sbjct: 310 TATIPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 14/163 (8%), Positives = 36/163 (22%), Gaps = 42/163 (25%)

Query: 68  ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVN----------------------SIDLDG 105
           +  +          RG    +  LL+    +                       +   + 
Sbjct: 193 QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 252

Query: 106 RTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVP 165
             A  ++  +G  ++V        +   +  +             ++    L +      
Sbjct: 253 HDAFKLSNPDGVFDLV------TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK- 305

Query: 166 KTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKW 208
                   +A    +P      L L +R       G+      
Sbjct: 306 -------ALAPTATIPGDANELLRLALR------LGNQGACAL 335

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 11/110 (10%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSI---DLDGRTALHIAACEGHVEVVKLLLSKKANID 132
               A  G +  +  L        +      +       A   GH  V+  LL     + 
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 224

Query: 133 ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPE 182
             +            YG   V   +     ++ K       ++NP  V +
Sbjct: 225 YAEIHEFE-------YGEKYVNPFIARHVNRL-KEMHDAFKLSNPDGVFD 266

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.6 bits (166), Expect = 5e-14
 Identities = 22/66 (33%), Positives = 35/66 (53%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L   A +G  + ++ L+    DVN  D DG T LH AA  G  E  ++L+    +++A +
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262

Query: 136 RWGSTA 141
           + G TA
Sbjct: 263 KVGQTA 268

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.7 bits (143), Expect = 6e-11
 Identities = 15/55 (27%), Positives = 22/55 (40%)

Query: 101 IDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYN 155
           +  D       A   G  E V  LL + A+I+  +  G TA   A    NV++  
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVK 90

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.0 bits (128), Expect = 4e-09
 Identities = 33/114 (28%), Positives = 50/114 (43%)

Query: 48  RQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRT 107
           R    +     PV          D     L     GD + V  LL  G+D+N  ++DG T
Sbjct: 16  RWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLT 75

Query: 108 ALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG 161
           ALH A  + +V++VK L+   ANI+  D  G      A   G +++   L ++G
Sbjct: 76  ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.6 bits (127), Expect = 6e-09
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 91  LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
           L +   +       G TALH+AA +G+ EV+KLL+  + +++ +D  G T    A ++G 
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 151 VEVYNILKARGAKV---PKTKRTPMTVAN 176
            E   IL      +    K  +T   VA+
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAA--CEGHVEVVKLLLSKKANI 131
           L   A  G  +    L+    D+ +++  G+TA  +A     G++E ++    KK N+
Sbjct: 236 LHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ----KKQNL 289

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.4 bits (163), Expect = 1e-13
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 85  VKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 141
           ++ ++      + +N+ D +G T L+IAA  G++ +V  LL   A+    ++ G   
Sbjct: 239 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP 295

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.2 bits (160), Expect = 4e-13
 Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 9/120 (7%)

Query: 65  TVPENLDSTMQLLFMACRGDVKGVEDLLNEGS-DVN-SIDLDGRTALHIAACEGHVEVVK 122
              E   S  Q   ++    ++ V D       ++N  +D  G T LH      ++E+VK
Sbjct: 65  RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVK 124

Query: 123 LLLSKKANIDARDRWGSTAAADAKYYGN-------VEVYNILKARGAKVPKTKRTPMTVA 175
            L+   +N    D  G +    A    N         + + L           RT +   
Sbjct: 125 HLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHI 184

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (120), Expect = 5e-08
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 91  LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK---KANIDARDRWGSTAAADAKY 147
           +  +   + S   +  +  +    E    +++ L  K      ++A+D  G T    A  
Sbjct: 209 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 268

Query: 148 YGNVEVYNILKARGAKV---PKTKRTPMTVA 175
            GN+ + + L   GA      K+   P+   
Sbjct: 269 LGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (95), Expect = 8e-05
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAA 113
           L +A R G++  V+ LL+ G+D    +  G   +   A
Sbjct: 263 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 6e-13
 Identities = 32/100 (32%), Positives = 50/100 (50%)

Query: 74  MQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 133
             L   A  G  + V+ LL +G+ VN+++ +G T LH AA +   E+  +LL   AN DA
Sbjct: 72  SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 131

Query: 134 RDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 173
           +D + +TA   A   GN+++ +IL    A          T
Sbjct: 132 KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNT 171

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 1e-12
 Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 69  NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK 128
           N +    L + A +   +    LL  G++ ++ D    TA+H AA +G+++++ +LL  K
Sbjct: 100 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 159

Query: 129 ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
           A+ + +D  G+T    A     VE   +L ++GA +    K ++TP+ VA
Sbjct: 160 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 6e-12
 Identities = 36/186 (19%), Positives = 57/186 (30%), Gaps = 39/186 (20%)

Query: 72  STMQLLFMACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEG-------------- 116
           S + +  +A  G ++ +++ +    S     D D RTALH A   G              
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 62

Query: 117 -------------------HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNIL 157
                                E+VK LL K A ++A ++ G T    A      E+  +L
Sbjct: 63  VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 122

Query: 158 KARGAKV---PKTKRTPM--TVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTK 212
              GA        + T M    A       + L   +      D        +A      
Sbjct: 123 LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 182

Query: 213 VWVKIL 218
              K+L
Sbjct: 183 EEAKLL 188

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 4e-10
 Identities = 9/57 (15%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 69  NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLL 125
           + +    L        V+  + L+++G+ +   + + +T L +A   G   ++K ++
Sbjct: 166 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 6e-10
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           +   A +G++K +  LL   +  N  D +G T LH+A  E  VE  KLL+S+ A+I   +
Sbjct: 140 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 199

Query: 136 RWGSTAAADAKYYGNVEVYNIL 157
           +   T    AK  G   +   +
Sbjct: 200 KEEKTPLQVAK-GGLGLILKRM 220

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.3 bits (155), Expect = 1e-12
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 78  FMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
                     +E LL  G+D  +    GRT L  A    +  + +LL +  A  +  D
Sbjct: 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP-EPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.4 bits (150), Expect = 5e-12
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 99  NSIDLDGRTALHIAACEGHVEVVKLLLSKKAN---IDARDRWGSTAAADAKYYGNVEVYN 155
             +  DG TALH+A    H   +  LL   A    +D ++  G TA   A   G      
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 1e-11
 Identities = 21/61 (34%), Positives = 29/61 (47%)

Query: 106 RTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVP 165
           RT LH+A       V++LLL   A+  AR   G T    A    N  +  +L+A GA  P
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

Query: 166 K 166
           +
Sbjct: 253 E 253

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 4e-09
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 4/118 (3%)

Query: 77  LFMACR-GDVKGVEDLLNEGSDVNSIDL---DGRTALHIAACEGHVEVVKLLLSKKANID 132
           L +A        ++ LL   +    +DL    G+TALH+AA  G    V+ L +  A + 
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72

Query: 133 ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLEL 190
             +R G TA   A          +L       P+         +    P+    P  +
Sbjct: 73  VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 3e-12
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 74  MQLLFMACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID 132
              L  A   +   +  LL + G++VN+    G +ALH A+  G + +V+ L+   A+  
Sbjct: 145 RSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 204

Query: 133 ARDRWGSTAAADAKYYGNVEV 153
            ++    T    A+    +++
Sbjct: 205 LKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 6e-11
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 71  DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVK 122
             +  L   + RG +  V  L+  G+D +  +    T L +A     +++++
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 2e-10
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 104 DGRTALHIAACEGHVEVVKLLLS----KKANIDARDRWGSTAAADAKYY 148
           DG T LHIA  +G++  V  L++        +D  +    T    A   
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 6e-06
 Identities = 38/189 (20%), Positives = 67/189 (35%), Gaps = 15/189 (7%)

Query: 77  LFMACR-GDVKGVEDLLNE----GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 131
           L +A   G++  V  L+N     G +++  +   +T LH+A       VV+LL++  A+ 
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 66

Query: 132 DARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTP----MTVANPREVPEYELNP 187
            A DR G TAA  A  + +      L    A             +T  +     E +   
Sbjct: 67  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 126

Query: 188 LELQVRKADGITKGSY------QVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEK 241
             L  R AD               A  N +   V++L +       ++ + +  L     
Sbjct: 127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 186

Query: 242 ARHPNVVQF 250
                +V+ 
Sbjct: 187 RGLLPLVRT 195

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.1 bits (136), Expect = 2e-10
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 75  QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLL 124
            L   A  G  +  + LL+  ++    D   R    +A+   H ++V+LL
Sbjct: 159 PLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.0 bits (133), Expect = 5e-10
 Identities = 21/82 (25%), Positives = 34/82 (41%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
           L + A   + + V  LL   ++ ++ D    T L +AA EG  E  K LL   AN +  D
Sbjct: 127 LHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITD 186

Query: 136 RWGSTAAADAKYYGNVEVYNIL 157
                    A    + ++  +L
Sbjct: 187 HMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.9 bits (125), Expect = 5e-09
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 88  VEDLLNEGSDVNS-IDLDGRTALHIAACEGHVEVVKLL 124
           + DLL +G+++N+ +D  G T+LH+AA     +  K L
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 119 EVVKLLLSKKANIDAR-DRWGSTAAADAKYYGNVEVYNIL 157
           +V+  LL++ A ++A  D+ G T+   A  +   +    L
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.3 bits (138), Expect = 4e-10
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
             N   V +K +     +  E+      E+  ++K RHPN +Q+ G   +     +V+EY
Sbjct: 37  VRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEY 96

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (131), Expect = 1e-09
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 104 DGRTALHIAACEGHV----EVVKLLLSKKANIDARDRWGSTAAADAKYY 148
           DG + LH+A          EV++ +    A ++ ++    T    A   
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 5e-09
 Identities = 10/55 (18%), Positives = 17/55 (30%)

Query: 76  LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
           L       +   V  LL  G+DVN +   G +   +        + + L      
Sbjct: 149 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 6e-08
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 163
           +GRTALH+A    + ++V LLL   A+++     G +         +  +   L     +
Sbjct: 144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 5/47 (10%)

Query: 76  LLFMACR-GDVKGVEDLL----NEGSDVNSIDLDGRTALHIAACEGH 117
            L +A    +     +++     + + +N  +   +T LH+A     
Sbjct: 5   FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 2e-09
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 107 TALHIAACEGHVEVVKLLLSKKANIDARDRWG 138
             L  AA  G +E +  LL    N++A++ +G
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFG 34

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 1e-07
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 98  VNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
           V   +  G TA  +A   G  EVV L+ + 
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 3e-09
 Identities = 19/135 (14%), Positives = 37/135 (27%), Gaps = 43/135 (31%)

Query: 72  STMQLLFMACR-GDVKGVEDLLNEGSDVN------SIDLDGRTALHIAA---CEGHVEVV 121
           + +  L  A +  D+ G+     +G D+       +      TALH+A        + +V
Sbjct: 5   AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 64

Query: 122 KLLLSKKANI---------------------------------DARDRWGSTAAADAKYY 148
             L+    N+                                 +  +  G T    AK  
Sbjct: 65  DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 124

Query: 149 GNVEVYNILKARGAK 163
            +     +L    + 
Sbjct: 125 KHEHCEELLTQALSG 139

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 4e-09
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 8/88 (9%)

Query: 182 EYELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAFTHELTI 238
           ++E+   ++ V +   I  GS+  V   KW+G  V VK+L+  +   P+++ AF +E+ +
Sbjct: 2   DWEIPDGQITVGQR--IGSGSFGTVYKGKWHGD-VAVKMLNV-TAPTPQQLQAFKNEVGV 57

Query: 239 VEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           + K RH N++ F+G  T    + IV ++
Sbjct: 58  LRKTRHVNILLFMGYSTAP-QLAIVTQW 84

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 4e-09
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 11/94 (11%)

Query: 183 YELNPLELQVRKADGITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAFTHELTIV 239
           + LN  EL++ +   I KG +  V    + G KV VK +  ++        AF  E +++
Sbjct: 2   WALNMKELKLLQT--IGKGEFGDVMLGDYRGNKVAVKCIKNDATAQ-----AFLAEASVM 54

Query: 240 EKARHPNVVQFVGAVTQ-NIPMMIVLEYHAKVSM 272
            + RH N+VQ +G + +    + IV EY AK S+
Sbjct: 55  TQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 88

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 4e-09
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 107 TALHIAACEGHVEVVKLLL-SKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG 161
             LH A  E     V+ LL SK + +  +D+ G      +  +   E+ + L ++ 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 8e-08
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 78  FMACRGDVKGVEDLL-NEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
                G       L+   G++ + +D  G  A  +A    + +V K  L+   +
Sbjct: 178 HALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 77  LFMACR-GDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHV 118
           L  AC   +   V++LL+   S +   D DGR  LH +      
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 8e-07
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 98  VNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKYYGNVEVYNI 156
           VN  D  G T L  A  EGH +   LL+ K  A  D  D  G+ A   A    N +V   
Sbjct: 165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKF 221

Query: 157 LKARGA 162
                 
Sbjct: 222 FLNNVV 227

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 1e-08
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 200 KGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
           +G +         V VK L  +    PE ++ F  E+  +    H N+++  G V    P
Sbjct: 26  RGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP-P 84

Query: 260 MMIVLEY 266
           M +V E 
Sbjct: 85  MKMVTEL 91

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 2e-08
 Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 89  EDLLNEGSDVNSIDL-DGRTA--LHIAACEGHVEVVKLLLSKKANI 131
           + L+  G+ V ++   D +TA        EG+ +  + L   +  +
Sbjct: 84  KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 5e-05
 Identities = 4/31 (12%), Positives = 14/31 (45%)

Query: 107 TALHIAACEGHVEVVKLLLSKKANIDARDRW 137
             L  ++ EG  ++V+ ++ +  +    +  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE 33

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 177 PREVPEYELNPLELQVRKADGITKGSY-QV--AKWN-GTKVWVKILDKESHKDPERINAF 232
           P    E+E+    L++ +   +  G + +V    +N  TKV VK L + S         F
Sbjct: 2   PWWEDEWEVPRETLKLVER--LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA----F 55

Query: 233 THELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
             E  ++++ +H  +V+    VTQ  P+ I+ EY
Sbjct: 56  LAEANLMKQLQHQRLVRLYAVVTQE-PIYIITEY 88

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 3e-08
 Identities = 11/60 (18%), Positives = 22/60 (36%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
                +  +KIL+K       ++   T E  ++ +  HP  V+       +  +   L Y
Sbjct: 30  LATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSY 89

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.5 bits (116), Expect = 4e-08
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 74  MQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLL 124
             L +       + VE L+  G+DV++     +TA  I+   G+ ++ ++L
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.2 bits (105), Expect = 1e-06
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 95  GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 154
           G+DVN+ D+   TALH A    H EVV+LL+   A++  + ++  TA   +   GN ++ 
Sbjct: 90  GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149

Query: 155 NILK 158
            IL+
Sbjct: 150 EILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (102), Expect = 3e-06
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 140
           D    L  AA  G  + V++L++  A     D  G++
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTS 36

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 4e-08
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 185 LNPLELQVRKADGITKGSYQV---AKW-NGTKVWVKILDKESHKDPERINAFTHELTIVE 240
           ++P +L   K   +  G + V    KW     V +K++ + S  + E    F  E  ++ 
Sbjct: 1   IDPKDLTFLKE--LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDE----FIEEAKVMM 54

Query: 241 KARHPNVVQFVGAVTQNIPMMIVLEYH 267
              H  +VQ  G  T+  P+ I+ EY 
Sbjct: 55  NLSHEKLVQLYGVCTKQRPIFIITEYM 81

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 4e-08
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 74  MQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLS 126
              + +A +     V   L   SD++  D  G T L +A   G  ++V +L  
Sbjct: 102 ALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 4e-06
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 105 GRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGST 140
               L  AA  G V+ V+ LL ++  + DA +R+G T
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKT 38

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 6e-04
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 95  GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 154
           G+DVN  D  G   +H+A  EGH  VV  L   ++++  RD  G T    A   G  ++ 
Sbjct: 91  GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLV 149

Query: 155 NIL 157
           +IL
Sbjct: 150 DIL 152

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 9e-08
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 203 YQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMI 262
           +     N  KV +K + + +  + +    F  E  ++ K  HP +VQ  G   +  P+ +
Sbjct: 22  HLGYWLNKDKVAIKTIREGAMSEED----FIEEAEVMMKLSHPKLVQLYGVCLEQAPICL 77

Query: 263 VLEY 266
           V E+
Sbjct: 78  VFEF 81

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 9e-08
 Identities = 10/61 (16%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
              G +V ++ ++ +     E      +E+ ++ + ++PN+V ++ +      + +V+EY
Sbjct: 42  VATGQEVAIRQMNLQQQPKKEL---IINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98

Query: 267 H 267
            
Sbjct: 99  L 99

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 9e-08
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 18/105 (17%)

Query: 176 NPREVP---EYELNPLELQVRKADGITKGSY----------QVAKWNGTKVWVKILDKES 222
           +P ++P   ++E     L   K   +  G++           +       V VK+L   +
Sbjct: 8   DPTQLPYDHKWEFPRNRLSFGKT--LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA 65

Query: 223 HKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEY 266
           H       A   EL ++     H N+V  +GA T   P +++ EY
Sbjct: 66  H--LTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEY 108

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.7 bits (118), Expect = 9e-08
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 4/64 (6%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP----MMI 262
                 V VK+L  +  +DP     F  E        HP +V          P      I
Sbjct: 29  LRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYI 88

Query: 263 VLEY 266
           V+EY
Sbjct: 89  VMEY 92

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 11/61 (18%), Positives = 27/61 (44%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           + NG    +K+L KE     +++     E  ++    HP +++  G       + ++++Y
Sbjct: 26  RHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDY 85

Query: 267 H 267
            
Sbjct: 86  I 86

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           K        K++D +S ++ E    +  E+ I+    HPN+V+ + A      + I++E+
Sbjct: 34  KETSVLAAAKVIDTKSEEELED---YMVEIDILASCDHPNIVKLLDAFYYENNLWILIEF 90

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 1e-07
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 11/77 (14%)

Query: 198 ITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAV 254
           I KG + +V   KW G +V VKI      +   R      E+      RH N++ F+ A 
Sbjct: 11  IGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREA----EIYQTVMLRHENILGFIAAD 66

Query: 255 TQN----IPMMIVLEYH 267
            ++      + +V +YH
Sbjct: 67  NKDNGTWTQLWLVSDYH 83

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 179 EVPEYELNPLELQVRKADGITKGSYQV---AKWNGTKVWVKILDKESHKDPERINAFTHE 235
              ++E+   ++ ++    +  G Y       W    + V +  K   +D   +  F  E
Sbjct: 8   NYDKWEMERTDITMKHK--LGGGQYGEVYEGVWKKYSLTVAV--KTLKEDTMEVEEFLKE 63

Query: 236 LTIVEKARHPNVVQFVGAVTQNIPMMIVLEYH 267
             ++++ +HPN+VQ +G  T+  P  I+ E+ 
Sbjct: 64  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFM 95

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           K +G  +  K++  E    P   N    EL ++ +   P +V F GA   +  + I +E+
Sbjct: 28  KPSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH 85

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           K  G     K ++     D        +E++I+ +  HP ++    A      M+++LE+
Sbjct: 51  KATGRVFVAKFINTPYPLDKYT---VKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 107

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           +  G     K +      D E       E+  +   RHP +V    A   +  M+++ E+
Sbjct: 48  RATGNNFAAKFVMTPHESDKET---VRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 104

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 5e-07
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 207 KWNGTKVWVKILDKE---SHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIV 263
           K  G +   K + K    S +          E++I+++ +HPNV+           ++++
Sbjct: 32  KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 91

Query: 264 LEY 266
           LE 
Sbjct: 92  LEL 94

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 6e-07
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           K     V VKIL  E+  DP   +    E  ++++  +P +V+ +G        M+V+E 
Sbjct: 31  KKVVKTVAVKILKNEA-NDPALKDELLAEANVMQQLDNPYIVRMIGICEAE-SWMLVMEM 88

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.7 bits (113), Expect = 6e-07
 Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           K     V +K + K++ +  E   +  +E+ ++ K +HPN+V           + ++++ 
Sbjct: 31  KRTQKLVAIKCIAKKALEGKEG--SMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQL 88

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 6e-07
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 209 NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
               V +K+L + +  +         E  I+ +  +P +V+ +G V Q   +M+V+E 
Sbjct: 35  KQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIG-VCQAEALMLVMEM 89

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 9e-07
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           +     V VKI+D +  +  +       E+ I +   H NVV+F G   +     + LEY
Sbjct: 27  RVTEEAVAVKIVDMK--RAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 84

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 18/105 (17%)

Query: 176 NPREVP---EYELNPLELQVRKADGITKGSY-QV--AKWNGT-------KVWVKILDKES 222
           + RE     ++E     L+  K   +  G++ +V  A   G        +V VK+L +++
Sbjct: 22  DFREYEYDLKWEFPRENLEFGKV--LGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA 79

Query: 223 HKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEY 266
             D     A   EL ++ +   H N+V  +GA T + P+ ++ EY
Sbjct: 80  --DSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEY 122

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 17/101 (16%), Positives = 48/101 (47%), Gaps = 14/101 (13%)

Query: 182 EYELNPLELQVRKADGITKGSY----------QVAKWNGTKVWVKILDKESHKDPERINA 231
           E+E+   ++ + +   + +GS+           V     T+V +K +++ +         
Sbjct: 14  EWEVAREKITMSRE--LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA--SMRERIE 69

Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
           F +E +++++    +VV+ +G V+Q  P ++++E   +  +
Sbjct: 70  FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 110

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 182 EYELNPLELQVRKADGITKGSY------QVAKWNGTKVWVKILDKESHKDPERINAFTHE 235
           +YE+    +++ +   I +G +               + V I   ++         F  E
Sbjct: 1   DYEIQRERIELGRC--IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQE 58

Query: 236 LTIVEKARHPNVVQFVGAVTQNIPMMIVLEYH 267
              + +  HP++V+ +G +T+N P+ I++E  
Sbjct: 59  ALTMRQFDHPHIVKLIGVITEN-PVWIIMELC 89

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query: 171 PMTVANPREVPEYELNPLELQVRKADGITKGSY-QV--AKWNGT-KVWVKILDKESHKDP 226
           P T    ++   +E+    L++     + +G + +V    WNGT +V +K L   +    
Sbjct: 2   PQTQGLAKD--AWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE 57

Query: 227 ERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
                F  E  +++K RH  +VQ    V++  P+ IV EY
Sbjct: 58  A----FLQEAQVMKKLRHEKLVQLYAVVSEE-PIYIVTEY 92

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 200 KGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
            G  ++       V +K L     +   R   F  E +I+ +  HPNV+   G VT++ P
Sbjct: 44  SGHLKLPGKREIFVAIKTLKSGYTEKQRR--DFLSEASIMGQFDHPNVIHLEGVVTKSTP 101

Query: 260 MMIVLEYH 267
           +MI+ E+ 
Sbjct: 102 VMIITEFM 109

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           K +   + +K+L K   +     +    E+ I    RHPN+++  G       + ++LEY
Sbjct: 28  KQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEY 87

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.7 bits (105), Expect = 6e-06
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHE---LTIVEKARHPNVVQFVGAVTQNIPMMIV 263
              G    +K LDK+  K  +      +E   L++V     P +V    A      +  +
Sbjct: 26  ADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFI 85

Query: 264 LEY 266
           L+ 
Sbjct: 86  LDL 88

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVT--QNIPMMIVL 264
           K +G  +  K LD  S  + E+      E+ ++ + +HPN+V++   +    N  + IV+
Sbjct: 26  KSDGKILVWKELDYGSMTEAEK-QMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVM 84

Query: 265 EY 266
           EY
Sbjct: 85  EY 86

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 7e-06
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 105 GRTALHIAACEGHVEVVKLLLS 126
           GR  + +A   GH +V + L +
Sbjct: 102 GRLPVDLAEELGHRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 1e-05
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 107 TALHIAACEGHVEVVKLLLSKKANIDARDRW 137
             L  AA  G VE V+ LL   AN +A + +
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSY 35

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 7e-06
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 178 REVPEYELNPLELQVRKADGITKGSY------QVAKWNGTKVWVKILDKESHKDPERINA 231
           + V    + P  L V   + I +G +       +   +G K+   +       D   ++ 
Sbjct: 15  QAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQ 74

Query: 232 FTHELTIVEKARHPNVVQFVGAVTQ-NIPMMIVLEYH 267
           F  E  I++   HPNV+  +G   +     ++VL Y 
Sbjct: 75  FLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM 111

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 17/99 (17%)

Query: 181 PEYELNPLELQVRKADGITKGSY------------QVAKWNGTKVWVKILDKESHKDPER 228
           P +EL    L + K   + +G++            +      TKV VK+L  ++ +    
Sbjct: 6   PRWELPRDRLVLGKP--LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLS 63

Query: 229 INAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEY 266
                 E+ +++   +H N++  +GA TQ+ P+ +++EY
Sbjct: 64  --DLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEY 100

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 203 YQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMI 262
           Y+     G    +K +  E  +D    +    E++I+++ +H N+V+    +     +++
Sbjct: 19  YKAQNNYGETFALKKIRLE-KEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVL 77

Query: 263 VLEYH 267
           V E+ 
Sbjct: 78  VFEHL 82

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 209 NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
             T V VK+L +E+  D +    F  E  ++ +  +PN+V+ +G      PM ++ EY
Sbjct: 42  PFTMVAVKMLKEEASADMQA--DFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEY 97

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           K  G    +KIL KE     + +     E  +++  RHP +     A   +  +  V+EY
Sbjct: 27  KATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEY 86

Query: 267 H 267
            
Sbjct: 87  A 87

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKA-RHPNVVQFVGAVTQNIPMMIVLE 265
           K       +K L K+     + +     E  ++  A  HP +            +  V+E
Sbjct: 24  KKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVME 83

Query: 266 YH 267
           Y 
Sbjct: 84  YL 85

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 177 PREVPEYELNPLELQVRKADGITKGSYQVA-----KWNGTKVWVKILDKESHKDPERINA 231
           P   P  + N ++ Q    D I +G++        K +G ++   I   + +   +    
Sbjct: 1   PTIYPVLDWNDIKFQ----DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRD 56

Query: 232 FTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEY 266
           F  EL ++ K   HPN++  +GA      + + +EY
Sbjct: 57  FAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEY 92

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 207 KWNGTKVWVKILDKE--SHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVL 264
           K     V +K +     S            E+ ++++  HPN++  + A      + +V 
Sbjct: 20  KNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVF 79

Query: 265 EY 266
           ++
Sbjct: 80  DF 81

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 13/98 (13%)

Query: 184 ELNPLELQVRKADGITKGSY-QV--AKWNGT------KVWVKILDKESHKDPERINAFTH 234
           E++P  +  +K  G   G + +V       +       V +K L        ++   F  
Sbjct: 3   EIHPSCVTRQKVIG--AGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLG 58

Query: 235 ELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
           E  I+ +  H N+++  G +++  PMMI+ EY    ++
Sbjct: 59  EAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGAL 96

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 11/61 (18%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           K  G  V +K +  ++  +    +    E++++++  HPN+V+ +  +     + +V E+
Sbjct: 24  KLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF 82

Query: 267 H 267
            
Sbjct: 83  L 83

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
              G KV +K L +    +         EL +++  RH NV+  +   T +  +    ++
Sbjct: 40  GRTGAKVAIKKLYRPFQSELFA-KRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDF 98

Query: 267 H 267
           +
Sbjct: 99  Y 99

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (97), Expect = 6e-05
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           K +G    +KILDK+     ++I    +E  I++    P +V+   +   N  + +V+EY
Sbjct: 63  KESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEY 122

Query: 267 H 267
            
Sbjct: 123 V 123

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
             +      K +  +   D         E++I+  ARH N++    +      ++++ E+
Sbjct: 27  TSSKKTYMAKFVKVKG-TDQVL---VKKEISILNIARHRNILHLHESFESMEELVMIFEF 82

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 9/61 (14%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           +     V +K +  +   D    ++   E+ ++++ +H N+V+    +  +  + +V E+
Sbjct: 24  RETHEIVALKRVRLD-DDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF 82

Query: 267 H 267
            
Sbjct: 83  C 83

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 1/79 (1%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
           +  G KV +K +  E+ K+   I     E+ I++  +H NVV  +             + 
Sbjct: 32  RKTGQKVALKKVLMENEKEGFPIT-ALREIKILQLLKHENVVNLIEICRTKASPYNRCKG 90

Query: 267 HAKVSMPITPFLTLSFHKQ 285
              +               
Sbjct: 91  SIYLVFDFCEHDLAGLLSN 109

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 209 NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGA----VTQNIPMMIVL 264
              +V    L        ER   F  E  +++  +HPN+V+F  +    V     +++V 
Sbjct: 33  TTVEVAWCELQDRKLTKSER-QRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 91

Query: 265 EY 266
           E 
Sbjct: 92  EL 93

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
             N  +V +K +     +          E+ I+ + RH N++     +       +   Y
Sbjct: 30  NVNKVRVAIKKISPF--EHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVY 87

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
              G +V VK L +   +          EL +++  +H NV+  +   T    +    + 
Sbjct: 40  TKTGLRVAVKKLSRP-FQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDV 98

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 8e-04
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 187 PLELQVRKADGITKGSY-QVAKW----NGTKVWVKILDKESHKDPERI---NAFTHELTI 238
           PLE Q +    +  G +  V       +   V +K ++K+   D   +        E+ +
Sbjct: 1   PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVL 60

Query: 239 VEKAR--HPNVVQFVGAVTQNIPMMIVLEY 266
           ++K       V++ +    +    +++LE 
Sbjct: 61  LKKVSSGFSGVIRLLDWFERPDSFVLILER 90

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 209 NGTKVWVKILDKESHK--DPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
            G KV + +  KE  +   P+       E  ++    +P+V + +G    +   +I    
Sbjct: 33  EGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLM 92

Query: 267 H 267
            
Sbjct: 93  P 93

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 14/101 (13%)

Query: 177 PREVPEYELNPLELQVRKADGITKGSY----------QVAKWNGTKVWVKILDKESHKDP 226
           P +  ++E     L++ K   + +G++                   V VK+L + +    
Sbjct: 2   PYDASKWEFPRDRLKLGKP--LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSE 59

Query: 227 ERINAFTHELTIVEKARHPNVVQFVGAVTQ-NIPMMIVLEY 266
            R    +    ++    H NVV  +GA T+   P+M+++E+
Sbjct: 60  HR-ALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 99

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 200 KGSYQVAKWNGTKVWVKILDKES-HKDPERINAFTHELTIVEKARH-PNVVQFVGAVTQN 257
                     G    +K+L K +  +  +       E  ++E  R  P +V    A    
Sbjct: 42  LVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE 101

Query: 258 IPMMIVLEYH 267
             + ++L+Y 
Sbjct: 102 TKLHLILDYI 111

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 18/115 (15%)

Query: 164 VPKTKRTPMTVANPREVPEYELNPLELQVRKADG------ITKGSYQVA-----KWNGTK 212
           VP   R    V   R    ++     ++    D       + +G Y          N  K
Sbjct: 3   VPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEK 62

Query: 213 VWVKILDKESHKDPERINAFTHELTIVEKAR-HPNVVQFVGAVTQNIPMMIVLEY 266
           V VKIL     K          E+ I+E  R  PN++     V   +     L +
Sbjct: 63  VVVKILKPVKKKK------IKREIKILENLRGGPNIITLADIVKDPVSRTPALVF 111

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 207 KWNGTKVWVKILDKES------HKDPERINAFTHELTIVEKAR-HPNVVQFVGAVTQNIP 259
           K    +  VKI+D          +  E   A   E+ I+ K   HPN++Q       N  
Sbjct: 25  KPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTF 84

Query: 260 MMIVLEY 266
             +V + 
Sbjct: 85  FFLVFDL 91

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 21/104 (20%)

Query: 174 VANPREVPEYELNPLELQVRKADGITKGSYQVA-----KWNGTKVWVKILDKESHKDPER 228
           VA P + P+    P E+       I  GS+ V        +G  V +K + ++       
Sbjct: 7   VATPGQGPD---RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF---- 59

Query: 229 INAFTHELTIVEKARHPNVVQFVGAVTQ------NIPMMIVLEY 266
                 EL I+ K  H N+V+              + + +VL+Y
Sbjct: 60  ---KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDY 100

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.5 bits (77), Expect = 0.004
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 107 TALHIAACEGHVEVVKLLLSKKANIDARDRW 137
                A   G ++ VK  ++K  +++     
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEG 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	92.39
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	92.18
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	89.73
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	88.98
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	88.83
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	87.84
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	87.7
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	87.69
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	86.16
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	86.14
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	85.78
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	85.37
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	85.28
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	83.83
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	82.76
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	81.59
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	81.37
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	80.89
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	80.01

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-36  Score=253.66  Aligned_cols=214  Identities=17%  Similarity=0.103  Sum_probs=173.9

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 022605           68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSD---VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD  144 (294)
Q Consensus        68 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~  144 (294)
                      .+.+|.||||+||..|+.++|++|+++|++   ++.+|..|.||||+||..|+.+++++|+++|++++..|..|.||||+
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~   84 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhh
Confidence            467899999999999999999999999988   66788999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCC----------------ccccCCC---CCcccccCcchhhhhcccCCCCCceee
Q 022605          145 AKYYGNVEVYNILKARGAKVPKTKRTP----------------MTVANPR---EVPEYELNPLELQVRKADGITKGSYQV  205 (294)
Q Consensus       145 A~~~g~~~~v~~Ll~~ga~~~~~~~t~----------------l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~  205 (294)
                      |+..++.+++++|++.+...+......                +......   .............++..+..|.||||+
T Consensus        85 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~  164 (255)
T d1oy3d_          85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (255)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             hhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccc
Confidence            999999999999998876543321111                1111110   111222222345677788889999999


Q ss_pred             eeecCchhhhHhhhccCCCChHh-hhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccccc
Q 022605          206 AKWNGTKVWVKILDKESHKDPER-INAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHK  284 (294)
Q Consensus       206 A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~  284 (294)
                      |+..|+.+++++|++.+...... ...|.||||+|++.++.+++++|...+.++        ...+..|.||||+|+.++
T Consensus       165 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi--------n~~d~~g~t~L~~A~~~~  236 (255)
T d1oy3d_         165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP--------TARMYGGRTPLGSALLRP  236 (255)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--------TCCCTTSCCHHHHHHTSS
T ss_pred             cccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCC--------CCCCCCCCCHHHHHHHCC
Confidence            99999999999999888766644 457899999999999999999999988763        456788999999999999


Q ss_pred             ccccC
Q 022605          285 QTHTS  289 (294)
Q Consensus       285 ~~~~~  289 (294)
                      +..++
T Consensus       237 ~~~i~  241 (255)
T d1oy3d_         237 NPILA  241 (255)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            87664

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=9.7e-36  Score=251.47  Aligned_cols=205  Identities=17%  Similarity=0.161  Sum_probs=166.8

Q ss_pred             CCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHH--------HhcCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 022605           50 SSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDL--------LNEGSDVNSIDLDGRTALHIAACEGHVEVV  121 (294)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~L--------l~~g~~~~~~~~~g~TpLh~A~~~g~~~~v  121 (294)
                      .+...+...+.+.......+..|+||||+||..|+.++|++|        ++.|+|||.+|.+|+||||+|+..|+.++|
T Consensus        11 ~~~~~~~~~l~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv   90 (277)
T d2fo1e1          11 AGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV   90 (277)
T ss_dssp             HSSSCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CCCHHHHHHHHhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccc
Confidence            344555555555555555555699999999999999988776        567999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC---CCC---------------------------------
Q 022605          122 KLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA---KVP---------------------------------  165 (294)
Q Consensus       122 ~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga---~~~---------------------------------  165 (294)
                      ++|+++|+|++.+|..|.|||++|+..++.+++.++...+.   .++                                 
T Consensus        91 ~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (277)
T d2fo1e1          91 AYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA  170 (277)
T ss_dssp             HHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccc
Confidence            99999999999999999999999999999988888765421   111                                 


Q ss_pred             --------------CCCCCCccccCCCCC---cccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHh
Q 022605          166 --------------KTKRTPMTVANPREV---PEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPER  228 (294)
Q Consensus       166 --------------~~~~t~l~~a~~~~~---~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~  228 (294)
                                    ..|+|||++++..+.   ..+++.....+....+..|.||||+|+..|+.++|++|++.|++....
T Consensus       171 ~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~  250 (277)
T d2fo1e1         171 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV  250 (277)
T ss_dssp             CSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCC
T ss_pred             cccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCc
Confidence                          116677777755433   233333334566677888999999999999999999999999888778


Q ss_pred             hhhhhhHHHHHHHcCCCchhhhhhhh
Q 022605          229 INAFTHELTIVEKARHPNVVQFVGAV  254 (294)
Q Consensus       229 ~~~~~t~l~~a~~~~~~~iv~~L~~~  254 (294)
                      +..|.||+|+|++.|+.+||++|..|
T Consensus       251 d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         251 DATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             CSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            88999999999999999999999876

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-36  Score=245.77  Aligned_cols=210  Identities=23%  Similarity=0.191  Sum_probs=185.8

Q ss_pred             CccccccCCCCCccccCCCCCC-CCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHH
Q 022605           41 NMRFSFGRQSSLDPIRRSPVQD-ELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVE  119 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~  119 (294)
                      .+++.++..|+.+.++.++... ......|..|+||||+||..|+.+++++|++.+.+....+..+.++++.|+..++.+
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDE   84 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccc
Confidence            4556678899999998877654 455678999999999999999999999999999998888899999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCCCC---cccccCcchhhhh
Q 022605          120 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREV---PEYELNPLELQVR  193 (294)
Q Consensus       120 ~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~~~---~~~l~~~~~~~~~  193 (294)
                      ++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+.   .+++... ..+++
T Consensus        85 i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~-~~~i~  163 (223)
T d1uoha_          85 IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY-KASTN  163 (223)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSC
T ss_pred             hhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc-cceee
Confidence            999999999999999999999999999999999999999999998644   8999999976543   3444432 36677


Q ss_pred             cccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhh
Q 022605          194 KADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG  252 (294)
Q Consensus       194 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~  252 (294)
                      ..+..|.||||.|+..|+.++|++|++.|++....+..|+||+|+| ..|+.+|+++|+
T Consensus       164 ~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll  221 (223)
T d1uoha_         164 IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMV  221 (223)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHH
T ss_pred             eccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhccc
Confidence            8888999999999999999999999999988888888999999988 579999999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3.4e-34  Score=244.02  Aligned_cols=206  Identities=22%  Similarity=0.246  Sum_probs=178.2

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q 022605           70 LDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYG  149 (294)
Q Consensus        70 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g  149 (294)
                      .++.|||+.||..|+.++|++||++|+|+|.+|.+|+||||+|+..|+.++|++|+++|++.+..+..+.+||++|+..+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCC---CCCCCCccccCCCCCc---ccccCcc--------------------------hhhhhcccC
Q 022605          150 NVEVYNILKARGAKVP---KTKRTPMTVANPREVP---EYELNPL--------------------------ELQVRKADG  197 (294)
Q Consensus       150 ~~~~v~~Ll~~ga~~~---~~~~t~l~~a~~~~~~---~~l~~~~--------------------------~~~~~~~~~  197 (294)
                      +.++++.|+++|+..+   ..+.+|+++|+..+..   ..++...                          .......+.
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             ccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccC
Confidence            9999999999998874   4489999998764322   1211110                          112234456


Q ss_pred             CCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccc
Q 022605          198 ITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPF  277 (294)
Q Consensus       198 ~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l  277 (294)
                      .|.||||.|+..|+.+++++|++.+.+....+..|+||||+|++.|+.++|++|...+++.        ...++.|.|||
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv--------~~~d~~G~TaL  269 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM--------EAVNKVGQTAF  269 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--------TCCCTTSCCTT
T ss_pred             CCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC--------CCcCCCCCCHH
Confidence            6789999999999999999999998877777788999999999999999999999999874        44678899999


Q ss_pred             cccccc
Q 022605          278 LTLSFH  283 (294)
Q Consensus       278 ~~a~~n  283 (294)
                      |+|+++
T Consensus       270 ~~A~e~  275 (291)
T d1s70b_         270 DVADED  275 (291)
T ss_dssp             TSCCSG
T ss_pred             HHHHHH
Confidence            999874

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=258.16  Aligned_cols=241  Identities=20%  Similarity=0.162  Sum_probs=185.8

Q ss_pred             CccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHH-
Q 022605           41 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVE-  119 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~-  119 (294)
                      ++++.++..|+.+.++.++..+...+..|..|.||||+||..|+.++|++|+++|++++.++.+|+||||+|+..|+.+ 
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~   81 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM   81 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            4567788889999999999988888888999999999999999999999999999999999999999999988777554 


Q ss_pred             -----------------------------------------------------------------HHHHHHhCCCCCCCC
Q 022605          120 -----------------------------------------------------------------VVKLLLSKKANIDAR  134 (294)
Q Consensus       120 -----------------------------------------------------------------~v~~Ll~~gad~~~~  134 (294)
                                                                                       ++++|+++|++++..
T Consensus        82 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~  161 (408)
T d1n11a_          82 VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA  161 (408)
T ss_dssp             HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcC
Confidence                                                                             556677788888888


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCC---------------------------------C
Q 022605          135 DRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANP---------------------------------R  178 (294)
Q Consensus       135 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~---------------------------------~  178 (294)
                      +..|.+|||+|+..|+.+++++|+++|++++..   |.||++++..                                 .
T Consensus       162 ~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~  241 (408)
T d1n11a_         162 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE  241 (408)
T ss_dssp             CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHh
Confidence            889999999999999999999999999887543   5566555411                                 1


Q ss_pred             CC---cccccCcc--------------------------------hhhhhcccCCCCCceeeeeecCchhhhHhhhccCC
Q 022605          179 EV---PEYELNPL--------------------------------ELQVRKADGITKGSYQVAKWNGTKVWVKILDKESH  223 (294)
Q Consensus       179 ~~---~~~l~~~~--------------------------------~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~  223 (294)
                      ..   ++++....                                +.+++..+..+.||||.++..++.++++++++.+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~  321 (408)
T d1n11a_         242 GHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA  321 (408)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC
T ss_pred             CcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccc
Confidence            00   01111000                                11122223334556666666666666666666665


Q ss_pred             CChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccccccccC
Q 022605          224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       224 ~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~~  289 (294)
                      .....+.+|.||||.|++.|+.++|++|...++++        ...+..|.||||+|+.+|++.+|
T Consensus       322 ~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~--------n~~d~~G~t~L~~A~~~~~~~iv  379 (408)
T d1n11a_         322 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP--------NEVSSDGTTPLAIAKRLGYISVT  379 (408)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS--------CCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--------CCCCCCCCCHHHHHHHcCCHHHH
Confidence            55566678899999999999999999999999874        34678899999999999998765

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.8e-33  Score=232.99  Aligned_cols=197  Identities=17%  Similarity=0.093  Sum_probs=169.6

Q ss_pred             CCCCCCCccccccCCCCCccccCCCCCCCC---CCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 022605           35 FDPRRNNMRFSFGRQSSLDPIRRSPVQDEL---TVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHI  111 (294)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~  111 (294)
                      ++.++.++++.++..++.+.++.++..+..   ....+..|.||||+||..|+.++|++|+++|++++.+|.+|.||||+
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~   84 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhh
Confidence            345678888888999998888888765543   45678899999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHHHhCCCC-----------------------------------------------CCCCCCCCCCHHHH
Q 022605          112 AACEGHVEVVKLLLSKKAN-----------------------------------------------IDARDRWGSTAAAD  144 (294)
Q Consensus       112 A~~~g~~~~v~~Ll~~gad-----------------------------------------------~~~~~~~g~t~L~~  144 (294)
                      |+..++.+++++|++.+..                                               ++.+|..|.||||+
T Consensus        85 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~  164 (255)
T d1oy3d_          85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (255)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             hhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccc
Confidence            9999999999999865432                                               14557788899999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCC
Q 022605          145 AKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHK  224 (294)
Q Consensus       145 A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~  224 (294)
                      |+..++.+++++|++.+++.+.                           ..+..|.||||+|+..|+.+++++|++.+++
T Consensus       165 A~~~~~~~~v~~Ll~~~~~~~~---------------------------~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad  217 (255)
T d1oy3d_         165 AVIHKDAEMVRLLRDAGADLNK---------------------------PEPTCGRTPLHLAVEAQAASVLELLLKAGAD  217 (255)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTC---------------------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cccccccccccchhcccccccc---------------------------cccccccccccccccccHHHHHHHHHHCCCC
Confidence            9999999999999988776532                           1245678999999999999999999999888


Q ss_pred             ChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCC
Q 022605          225 DPERINAFTHELTIVEKARHPNVVQFVGAVTQNI  258 (294)
Q Consensus       225 ~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~  258 (294)
                      ....++.|.||||+|+..++.+++++|...|++.
T Consensus       218 in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCC
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence            8778888999999999999999999999999863

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-32  Score=225.38  Aligned_cols=205  Identities=20%  Similarity=0.195  Sum_probs=181.7

Q ss_pred             chhHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 022605           72 STMQLLFMACRGDVKGVEDLLN-EGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  150 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  150 (294)
                      +.+.|+.+|..|+.+.|+.+++ .+.+++.+|..|+||||+||..|+.+++++|++.+.+....+..+.++++.++..++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            4678999999999999977775 567899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCC---CCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCC
Q 022605          151 VEVYNILKARGAKVPKT---KRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHK  224 (294)
Q Consensus       151 ~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~  224 (294)
                      .+++++|+++|++++..   |.||||+|+..   +++++|++.+ .+++..+..+.||||+|+..++.+++++|+..+.+
T Consensus        83 ~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g-~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~  161 (223)
T d1uoha_          83 DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS  161 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCccchhhhhcCCcchhhhhccccce
Confidence            99999999999998544   99999999654   5677777654 66777888899999999999999999999988888


Q ss_pred             ChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccccccccccccc
Q 022605          225 DPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQT  286 (294)
Q Consensus       225 ~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~  286 (294)
                      ....+..|+||||+|+..|+.++|++|...++++        ...+..|.||||+|. +++-
T Consensus       162 i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~--------~~~d~~g~tpl~~A~-~~~~  214 (223)
T d1uoha_         162 TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI--------YIENKEEKTPLQVAK-GGLG  214 (223)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS--------CCCCTTSCCHHHHCC-TTHH
T ss_pred             eeeccCCCCceeccccccCcHHHHHHHHHCCCCC--------CCCCCCCCCHHHHHH-CCCH
Confidence            7778889999999999999999999999998874        447788999999985 4443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.9e-32  Score=219.44  Aligned_cols=214  Identities=19%  Similarity=0.104  Sum_probs=175.6

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 022605           70 LDSTMQLLFMACRGDVKGVEDLLN----EGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA  145 (294)
Q Consensus        70 ~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A  145 (294)
                      .+|.||||+||..|+.++|++|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+..|.++++.|
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            369999999999999999999874    7999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCC-------CCCCCCccccCCCC---CcccccCcchhhhhcccCCCCCceeeeeecCchhhh
Q 022605          146 KYYGNVEVYNILKARGAKVP-------KTKRTPMTVANPRE---VPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWV  215 (294)
Q Consensus       146 ~~~g~~~~v~~Ll~~ga~~~-------~~~~t~l~~a~~~~---~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v  215 (294)
                      ...++.++++.+........       ....++++.+....   ....+..............+.+||+.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            99999999998887644321       11445555443221   112222211122233445677999999999999999


Q ss_pred             HhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccccccccCCC
Q 022605          216 KILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTSGG  291 (294)
Q Consensus       216 ~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~~~~  291 (294)
                      +++++.+......+..|.||+++|+..|+.+++++|...+.++        ...+..|.||||+|+.++++.++=|
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~--------n~~d~~G~TpL~~A~~~~~~divk~  228 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS--------SLKNCHNDTPLMVARSRRVIDILRG  228 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT--------TCCCTTSCCTTTTCSSHHHHHHHTC
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC--------CCCCCCCCCHHHHHHhCCCccccCc
Confidence            9999988887777888999999999999999999999998874        3467889999999999999877644

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.4e-32  Score=221.54  Aligned_cols=202  Identities=20%  Similarity=0.105  Sum_probs=170.6

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCC---CCCCCCCHHHHHHHc
Q 022605           73 TMQLLFMACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA---RDRWGSTAAADAKYY  148 (294)
Q Consensus        73 ~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~---~~~~g~t~L~~A~~~  148 (294)
                      .||||+||..|+.++|+.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|++++.   .+..|.+|+|+++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            4799999999999999999985 578999999999999999999999999999999999874   567899999999999


Q ss_pred             CCHHHHHHHHHCCCCCCC-----CCCCCccccCCCC---CcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhc
Q 022605          149 GNVEVYNILKARGAKVPK-----TKRTPMTVANPRE---VPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK  220 (294)
Q Consensus       149 g~~~~v~~Ll~~ga~~~~-----~~~t~l~~a~~~~---~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~  220 (294)
                      +..++++.++..+...+.     .+.|+++.++..+   +.++++..+ ......+..|.||||.|+..|+.+++++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhc-ccccccCCCCCCccchhhhcccccccccccc
Confidence            999999999999876543     3778888886543   344444433 4556677888999999999999999999998


Q ss_pred             cCCCC-hHhhhhhhhHHHHHHHcCCCchhhhhhhh-cCCCCeEEEEecCCCCCCCcccccccccc
Q 022605          221 ESHKD-PERINAFTHELTIVEKARHPNVVQFVGAV-TQNIPMMIVLEYHAKVSMPITPFLTLSFH  283 (294)
Q Consensus       221 ~~~~~-~~~~~~~~t~l~~a~~~~~~~iv~~L~~~-~~~~~l~~~~e~~~~g~l~~t~l~~a~~n  283 (294)
                      .+..+ ...+..|+||||+|++.++.++|++|+.. +.+        ....+..|.||||+|+.+
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad--------~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE--------YDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC--------SCCCCTTSCCTGGGCSCH
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCCC--------CCCcCCCCCCHHHHHhhH
Confidence            87544 44567899999999999999999999864 665        344678899999999854

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.9e-32  Score=221.97  Aligned_cols=184  Identities=14%  Similarity=0.025  Sum_probs=120.1

Q ss_pred             CchhHHHHHHHcCCHHH----HHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 022605           71 DSTMQLLFMACRGDVKG----VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  146 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~----v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~  146 (294)
                      +|.||||+|+..|+.++    ++++...|+++|.+|.+|+||||+||..|+.+++++|+++|+|++..|..|.|||++|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            58999999999998654    55566678999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCC---------CCCCccccCCCCC---cccccCcchhhhhcccCCCCCceeeeeecCchhh
Q 022605          147 YYGNVEVYNILKARGAKVPKT---------KRTPMTVANPREV---PEYELNPLELQVRKADGITKGSYQVAKWNGTKVW  214 (294)
Q Consensus       147 ~~g~~~~v~~Ll~~ga~~~~~---------~~t~l~~a~~~~~---~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~  214 (294)
                      ..++.+++++|++.+.+....         |.||++.|+..+.   +.+++..+.......+..|.||||+|++.|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            999999999999987664322         4445544433321   1222221111111122234455555555555555


Q ss_pred             hHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhh
Q 022605          215 VKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAV  254 (294)
Q Consensus       215 v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~  254 (294)
                      +++|++.|++....+..|+||+|+|++.++.+++++|...
T Consensus       161 v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         161 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             HHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            5555554444444444455555555555555555555443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.6e-32  Score=231.61  Aligned_cols=208  Identities=15%  Similarity=0.068  Sum_probs=163.1

Q ss_pred             hhHHHHHHH-cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH--------HhCCCCCCCCCCCCCCHHH
Q 022605           73 TMQLLFMAC-RGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLL--------LSKKANIDARDRWGSTAAA  143 (294)
Q Consensus        73 ~t~L~~Aa~-~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~L--------l~~gad~~~~~~~g~t~L~  143 (294)
                      +||||+++. .|+.++++.|.+.++++.. ...|+||||+||..|+.++|++|        ++.|+|||.+|.+|+||||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh   79 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM   79 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeec
Confidence            378886655 6788888888888776543 24599999999999999988776        5779999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCC---CCCCccccCCCCC---cccccC-------------------------------
Q 022605          144 DAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREV---PEYELN-------------------------------  186 (294)
Q Consensus       144 ~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~l~~a~~~~~---~~~l~~-------------------------------  186 (294)
                      +|+..|+.++|++|+++|++++..   |.||+++|.....   ..++..                               
T Consensus        80 ~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
T d2fo1e1          80 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV  159 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccc
Confidence            999999999999999999998654   9999998743211   000000                               


Q ss_pred             ---------------cchhhhhcccCCCCCceeeeeecCchhhhHhhhcc-CCCChHhhhhhhhHHHHHHHcCCCchhhh
Q 022605          187 ---------------PLELQVRKADGITKGSYQVAKWNGTKVWVKILDKE-SHKDPERINAFTHELTIVEKARHPNVVQF  250 (294)
Q Consensus       187 ---------------~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~iv~~  250 (294)
                                     .........+..|.||||.++..++.+++++++.. +......+..|.||||+|++.|+.++|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~  239 (277)
T d2fo1e1         160 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY  239 (277)
T ss_dssp             HHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence                           00111223344578999999999999999987644 44444566788999999999999999999


Q ss_pred             hhhhcCCCCeEEEEecCCCCCCCcccccccccccccccC
Q 022605          251 VGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       251 L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~~  289 (294)
                      |...+.+        ....+..|.||||+|+.+++..++
T Consensus       240 Ll~~gad--------in~~d~~G~T~L~~A~~~~~~~iv  270 (277)
T d2fo1e1         240 LIQQGAS--------VEAVDATDHTARQLAQANNHHNIV  270 (277)
T ss_dssp             HHHTTCC--------SSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             HHHCcCC--------CCCcCCCCCCHHHHHHHcCCHHHH
Confidence            9998876        455778899999999999987653

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.1e-30  Score=198.23  Aligned_cols=153  Identities=26%  Similarity=0.263  Sum_probs=138.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 022605           74 MQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEV  153 (294)
Q Consensus        74 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~  153 (294)
                      +|||+||..|+.++|++|+++|+|+|.+|..|.||||+|+ .|+.+++++|+++|++++..+..|.+|++.++..++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7999999999999999999999999999999999999886 789999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCC-hHhhhhh
Q 022605          154 YNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKD-PERINAF  232 (294)
Q Consensus       154 v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~  232 (294)
                      +++|++.+.+++.                            .+..+.+|+|.|+..++.+++++|++.++.+ ...+..|
T Consensus        82 ~~~l~~~~~~~~~----------------------------~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g  133 (156)
T d1ihba_          82 LQTLLEFQADVNI----------------------------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG  133 (156)
T ss_dssp             HHHHHHTTCCTTC----------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred             ccccccccccccc----------------------------cccccccccccccccccccccccccccccccccccCCCC
Confidence            9999998776533                            3456788999999999999999999888744 4556678


Q ss_pred             hhHHHHHHHcCCCchhhhhhhhc
Q 022605          233 THELTIVEKARHPNVVQFVGAVT  255 (294)
Q Consensus       233 ~t~l~~a~~~~~~~iv~~L~~~~  255 (294)
                      .||+|+|++.++.+++++|...|
T Consensus       134 ~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         134 DTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999999997754

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.2e-30  Score=214.19  Aligned_cols=214  Identities=19%  Similarity=0.075  Sum_probs=183.6

Q ss_pred             CccccccCCCCCccccCCCCCC-CCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCC---CCCCCCcHHHHHHHcC
Q 022605           41 NMRFSFGRQSSLDPIRRSPVQD-ELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNS---IDLDGRTALHIAACEG  116 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~---~~~~g~TpLh~A~~~g  116 (294)
                      .+++.++..++.+.++.++... ......|.+|.||||+|+..|+.++|++|+++|++++.   .+..|.||+|+|+..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            3567777888888888877653 55677889999999999999999999999999999874   5678999999999999


Q ss_pred             cHHHHHHHHhCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCccccCCC---CCcccccCcc
Q 022605          117 HVEVVKLLLSKKANI--DARDRWGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVANPR---EVPEYELNPL  188 (294)
Q Consensus       117 ~~~~v~~Ll~~gad~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---~~~~t~l~~a~~~---~~~~~l~~~~  188 (294)
                      ..++++.++..+.+.  ...+..+.||++.++..++.+++++|++.|.+.+   ..|+||||+|+..   +++++|+..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence            999999999998754  4467889999999999999999999999998875   4499999999754   5567777776


Q ss_pred             hhhhhcccCCCCCceeeeeecCchhhhHhhhcc-CCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCC
Q 022605          189 ELQVRKADGITKGSYQVAKWNGTKVWVKILDKE-SHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQN  257 (294)
Q Consensus       189 ~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~  257 (294)
                      ...++..+..|.||||+|+.+|+.++|++|+++ |++....++.|.||+|+|+.   .+++++|...+.+
T Consensus       162 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             cccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            667778888999999999999999999999975 77777778899999999874   5899999988764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=5.7e-29  Score=183.62  Aligned_cols=107  Identities=30%  Similarity=0.447  Sum_probs=101.2

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 022605           73 TMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVE  152 (294)
Q Consensus        73 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~  152 (294)
                      .|||++|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCC---CCCCccccCCCC
Q 022605          153 VYNILKARGAKVPKT---KRTPMTVANPRE  179 (294)
Q Consensus       153 ~v~~Ll~~ga~~~~~---~~t~l~~a~~~~  179 (294)
                      ++++|+++|++++..   |.||||+|....
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~~~~  112 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATDNQA  112 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCSSTT
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHhHHH
Confidence            999999999998654   889998886543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=2.7e-31  Score=225.91  Aligned_cols=219  Identities=17%  Similarity=0.168  Sum_probs=190.0

Q ss_pred             CCCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 022605           34 SFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAA  113 (294)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~  113 (294)
                      +.+..+.+.++.++..|+.+.++.++..+...+..|.+|.||||+|+..|+.++|++|+++|++.+..+..+.|||++|+
T Consensus        35 ~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          35 KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA  114 (291)
T ss_dssp             CCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccc
Confidence            33344556788899999999999999999888889999999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCC-----------------------------
Q 022605          114 CEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKAR-GAK-----------------------------  163 (294)
Q Consensus       114 ~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~-----------------------------  163 (294)
                      ..++.+++++|+++|+..+..|..+.+|+++|+..+..+.+..++.. +.+                             
T Consensus       115 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (291)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             cccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccc
Confidence            99999999999999999999999999999999999999998888854 322                             


Q ss_pred             CCCCCCCCccccCCC---CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHH
Q 022605          164 VPKTKRTPMTVANPR---EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVE  240 (294)
Q Consensus       164 ~~~~~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~  240 (294)
                      .+..|.|||++|+..   +++++|+..+ .+++..+..|.||||+|+..|+.++|++|++.|++....++.|.||||+|+
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~g-~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             ccCCCCChhhHHHHcCChhhhcccccce-ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            123389999999654   4567777655 567778888999999999999999999999999887777788999999997


Q ss_pred             HcCCCchhhhhhhhcCC
Q 022605          241 KARHPNVVQFVGAVTQN  257 (294)
Q Consensus       241 ~~~~~~iv~~L~~~~~~  257 (294)
                      +    +++++|......
T Consensus       274 e----~~~~~L~~~~~~  286 (291)
T d1s70b_         274 E----DILGYLEELQKK  286 (291)
T ss_dssp             S----GGGHHHHHHHHH
T ss_pred             H----HHHHHHHHHhhh
Confidence            4    799998776543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-28  Score=190.95  Aligned_cols=152  Identities=23%  Similarity=0.257  Sum_probs=136.8

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q 022605           73 TMQLLFMACRGDVKGVEDLLNE-GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNV  151 (294)
Q Consensus        73 ~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~  151 (294)
                      .+.|+.||..|+.++|++|++. ++++|.+|..|+||||+|+ .|+.+++++|++++++++..+..|.+|+++++..++.
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            3459999999999999999986 6899999999999999987 4889999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhh
Q 022605          152 EVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINA  231 (294)
Q Consensus       152 ~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  231 (294)
                      +++++++++|++++..                            +..|.||||+|+..|+.+++++|+ .++.....+..
T Consensus        82 ~~~~~~l~~~~~~n~~----------------------------~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~  132 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVP----------------------------DGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDAR  132 (156)
T ss_dssp             HHHHHHHHTTCCSCCC----------------------------CTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTT
T ss_pred             cccccccccccccccc----------------------------cCCCCeeecccccccccccccccc-ccccccccCCC
Confidence            9999999999876432                            456889999999999999999988 56666667788


Q ss_pred             hhhHHHHHHHcCCCchhhhhhhh
Q 022605          232 FTHELTIVEKARHPNVVQFVGAV  254 (294)
Q Consensus       232 ~~t~l~~a~~~~~~~iv~~L~~~  254 (294)
                      |+||+|+|++.|+.+|+++|.+.
T Consensus       133 G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         133 GLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             SCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999999999753

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.3e-28  Score=187.34  Aligned_cols=151  Identities=22%  Similarity=0.234  Sum_probs=139.5

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q 022605           72 STMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNV  151 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~  151 (294)
                      ..||||.||..|+.++|++||++|++++ .|..|+||||+|+..++.++++.++.........+..+.++++.++...+.
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4699999999999999999999999987 589999999999999999999999999888888889999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhh
Q 022605          152 EVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINA  231 (294)
Q Consensus       152 ~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  231 (294)
                      +++++++.+|++++.                            .+..|.||||+|+..|+.++|++|++.|++....+..
T Consensus        81 ~~~~~l~~~~~~~~~----------------------------~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~  132 (153)
T d1awcb_          81 NIVEVLLKHGADVNA----------------------------KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKF  132 (153)
T ss_dssp             HHHHHHHTTTCCTTC----------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             eeeecccccCCcccc----------------------------ccccCchHHHhhhhcchhheeeeccccccCCcccCCC
Confidence            999999998876533                            3567889999999999999999999999887777889


Q ss_pred             hhhHHHHHHHcCCCchhhhh
Q 022605          232 FTHELTIVEKARHPNVVQFV  251 (294)
Q Consensus       232 ~~t~l~~a~~~~~~~iv~~L  251 (294)
                      |.||+|+|+..|+.+|+++|
T Consensus       133 g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         133 CKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             SCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999999988

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.2e-28  Score=183.57  Aligned_cols=124  Identities=29%  Similarity=0.270  Sum_probs=109.8

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 022605           73 TMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVE  152 (294)
Q Consensus        73 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~  152 (294)
                      .++|+.||..|+.++|++|+++|+|+|.+|.+|+||||+|+..|+.+++++|+++|++++..|.+|+||||+|+..|+.+
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhcc
Q 022605          153 VYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKE  221 (294)
Q Consensus       153 ~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~  221 (294)
                      ++++|+++|++++..                         +..++.+.++++.|+..|+.+++++|+..
T Consensus        82 ~v~~Ll~~ga~v~~~-------------------------~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          82 VCKFLVESGAAVFAM-------------------------TYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHTTCCTTCC-------------------------CSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCcccc-------------------------cCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            999999999998654                         11122233456677788999999999843

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.8e-29  Score=208.92  Aligned_cols=62  Identities=31%  Similarity=0.348  Sum_probs=48.9

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 022605           71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSID-LDGRTALHIAACEGHVEVVKLLLSKKANID  132 (294)
Q Consensus        71 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~  132 (294)
                      ++.|+||.|+..|++++|++|+++|+++|.++ ..|+||||+|+..|+.+++++|++.+.+.+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~   66 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV   66 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc
Confidence            46788888888888888888888888887665 458888888888888888888888776653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-28  Score=201.94  Aligned_cols=184  Identities=18%  Similarity=0.108  Sum_probs=153.3

Q ss_pred             CCCccccccCCCCCccccC----CCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 022605           39 RNNMRFSFGRQSSLDPIRR----SPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAAC  114 (294)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~  114 (294)
                      +.++++.++..++.+.+..    +...+...+..|.+|.||||+||..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~   81 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE   81 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence            3455666666666544443    334555667789999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhCCCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCCccccCCC---CCc
Q 022605          115 EGHVEVVKLLLSKKANID------ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPK----TKRTPMTVANPR---EVP  181 (294)
Q Consensus       115 ~g~~~~v~~Ll~~gad~~------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~----~~~t~l~~a~~~---~~~  181 (294)
                      .++.++++.|++.+.+..      .....|.||||.|+..++.+++++|+..|+.++.    .|.||||+|+..   +++
T Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v  161 (221)
T d1iknd_          82 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV  161 (221)
T ss_dssp             HTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHH
Confidence            999999999999876643      3356789999999999999999999999998753    389999999765   566


Q ss_pred             ccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCC
Q 022605          182 EYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESH  223 (294)
Q Consensus       182 ~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~  223 (294)
                      ++|+..+ .+++..+..|.||||+|+..++.+++++|++...
T Consensus       162 ~~Ll~~g-ad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         162 SLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             HHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             HHHHhcC-CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            7888765 6788889999999999999999999999986643

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-28  Score=218.51  Aligned_cols=225  Identities=24%  Similarity=0.230  Sum_probs=174.8

Q ss_pred             CccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCC------------------
Q 022605           41 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSID------------------  102 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~------------------  102 (294)
                      ..++.+...++.+.++.++..+......+.+|.+|||+|+..|+.+++++|+++|++++..+                  
T Consensus       134 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~  213 (408)
T d1n11a_         134 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV  213 (408)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhh
Confidence            34444444555555666666655556666667777777777777777777777776665544                  


Q ss_pred             ---------------CCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 022605          103 ---------------LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT  167 (294)
Q Consensus       103 ---------------~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  167 (294)
                                     ..|.||||+|+..+..++++++++.+.+++..+..|.|||+.|+..++.+++++|+++|++++..
T Consensus       214 ~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~  293 (408)
T d1n11a_         214 ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT  293 (408)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC
T ss_pred             hhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccc
Confidence                           44566777778888888888888888888889999999999999999999999999999998654


Q ss_pred             ---CCCCccccCCCC---CcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHH
Q 022605          168 ---KRTPMTVANPRE---VPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEK  241 (294)
Q Consensus       168 ---~~t~l~~a~~~~---~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~  241 (294)
                         +.|||+.++..+   .+++++..+ .+++..+..|.||||.|++.|+.++|++|++.|++....+.+|.||+|+|++
T Consensus       294 ~~~~~t~L~~~~~~~~~~~~~~ll~~g-~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~  372 (408)
T d1n11a_         294 TRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR  372 (408)
T ss_dssp             CSSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHH
T ss_pred             cccccccchhhcccCcceeeeeecccc-ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence               889999986543   445555543 6778888899999999999999999999999998888888899999999999


Q ss_pred             cCCCchhhhhhhhcCCCCeEEEEec
Q 022605          242 ARHPNVVQFVGAVTQNIPMMIVLEY  266 (294)
Q Consensus       242 ~~~~~iv~~L~~~~~~~~l~~~~e~  266 (294)
                      .||.+||++|...........+.|.
T Consensus       373 ~~~~~iv~~L~~~~~~~~~~~~~~~  397 (408)
T d1n11a_         373 LGYISVTDVLKVVTDETSFVLVSDK  397 (408)
T ss_dssp             TTCHHHHHHHHHHCCCCSSCC----
T ss_pred             cCCHHHHHHHHHHHhcccccccccc
Confidence            9999999999887776655555554

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-28  Score=182.38  Aligned_cols=120  Identities=25%  Similarity=0.287  Sum_probs=110.6

Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcCC
Q 022605           72 STMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS-TAAADAKYYGN  150 (294)
Q Consensus        72 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~-t~L~~A~~~g~  150 (294)
                      +.++||+||.+|++++|++|+++|+|+|.+|..|.||||+|+ .|+.+++++|+++|++++..+..+. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            568999999999999999999999999999999999999775 7999999999999999999998876 69999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhc
Q 022605          151 VEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK  220 (294)
Q Consensus       151 ~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~  220 (294)
                      .+++++|+++|++++.                            .+..|.||||+|+.+|+.+++++|+.
T Consensus        82 ~~~v~~Ll~~ga~~~~----------------------------~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDV----------------------------RDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSC----------------------------CCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccc----------------------------ccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999988744                            36678899999999999999999984

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=2.5e-30  Score=225.93  Aligned_cols=219  Identities=14%  Similarity=0.025  Sum_probs=149.8

Q ss_pred             CCCCCchhHHHHHHHcCCHHHHHH---HHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC--CCCCCH
Q 022605           67 PENLDSTMQLLFMACRGDVKGVED---LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD--RWGSTA  141 (294)
Q Consensus        67 ~~~~~g~t~L~~Aa~~g~~~~v~~---Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~--~~g~t~  141 (294)
                      ..+..|.||||+||.+|+.+++++   |++.|+++|.+|.+|+||||+||..||.++|++|+++|++++..+  .+|+||
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            456789999999999999887765   789999999999999999999999999999999999999998865  469999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC---C---CCCCCccccCCC---CCcccccCcchhhhhcccC-------CCCCceee
Q 022605          142 AADAKYYGNVEVYNILKARGAKVP---K---TKRTPMTVANPR---EVPEYELNPLELQVRKADG-------ITKGSYQV  205 (294)
Q Consensus       142 L~~A~~~g~~~~v~~Ll~~ga~~~---~---~~~t~l~~a~~~---~~~~~l~~~~~~~~~~~~~-------~~~t~l~~  205 (294)
                      ||+|+..|+.++|++|++.|++..   .   .+.||++.|+..   +++++|++.+ .++...+.       ...++++.
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-VMLAYAEIHEFEYGEKYVNPFIA  243 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-HHHHHHHHCTTTTTTTTHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCC-CCcchHHHHHHHcCcHhhhHHHH
Confidence            999999999999999999998752   1   156777777765   4677887765 22221111       11133333


Q ss_pred             eeecCchhhhHhhhccCCC---C---hH---hhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCccc
Q 022605          206 AKWNGTKVWVKILDKESHK---D---PE---RINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITP  276 (294)
Q Consensus       206 A~~~g~~~~v~~Ll~~~~~---~---~~---~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~  276 (294)
                      +...+..+....+......   +   ..   ......++++.++..++.+++++|...+.....   .+.......+.||
T Consensus       244 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~---~~~~~~~~~g~T~  320 (346)
T d2ajaa1         244 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKAL---APTATIPGDANEL  320 (346)
T ss_dssp             HHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGG---SSCCSSTTCCCHH
T ss_pred             HhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhh---cccccCCCCCCcH
Confidence            3333333333333211110   0   11   112235788888888889999999876554211   0112223457799


Q ss_pred             ccccccccccccC
Q 022605          277 FLTLSFHKQTHTS  289 (294)
Q Consensus       277 l~~a~~n~~~~~~  289 (294)
                      ||+|+++|+..++
T Consensus       321 LhlA~~~Gn~e~v  333 (346)
T d2ajaa1         321 LRLALRLGNQGAC  333 (346)
T ss_dssp             HHHHHHHTCTTHH
T ss_pred             HHHHHHcCcHHHH
Confidence            9999999987654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=5.7e-31  Score=230.01  Aligned_cols=213  Identities=11%  Similarity=-0.014  Sum_probs=154.4

Q ss_pred             CCCCccccccCCCCCcc---ccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCC--CCCCcHHHHH
Q 022605           38 RRNNMRFSFGRQSSLDP---IRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSID--LDGRTALHIA  112 (294)
Q Consensus        38 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~--~~g~TpLh~A  112 (294)
                      .+.+.++.++..|+.+.   +..++..+...+..+.+|.||||+||..|+.++|++|+++|++++..+  .+|+||||+|
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A  168 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA  168 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHH
Confidence            34455666777777544   455777788888899999999999999999999999999999998766  4699999999


Q ss_pred             HHcCcHHHHHHHHhCCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCC---------------
Q 022605          113 ACEGHVEVVKLLLSKKANID---ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTP---------------  171 (294)
Q Consensus       113 ~~~g~~~~v~~Ll~~gad~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~t~---------------  171 (294)
                      |..||.++|++|+++|++..   ..+..+.||+|.|+..|+.++|++|++.|++++..   ..++               
T Consensus       169 a~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (346)
T d2ajaa1         169 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR  248 (346)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhcc
Confidence            99999999999999998653   33456778888999999999999999999876321   1111               


Q ss_pred             -------ccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChH-----hhhhhhhHHHHH
Q 022605          172 -------MTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPE-----RINAFTHELTIV  239 (294)
Q Consensus       172 -------l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~~t~l~~a  239 (294)
                             ++.+...+......    ...........++++.|+..|+.+++++|++.+.....     ...++.||||+|
T Consensus       249 ~~~~~~~l~~a~~~~~~~~~~----~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA  324 (346)
T d2ajaa1         249 LKEMHDAFKLSNPDGVFDLVT----KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA  324 (346)
T ss_dssp             HHHHHTTTTTTSSSSCCCCSS----HHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHH
T ss_pred             chHHHHHHHHhcccccHhHHh----cccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHH
Confidence                   11111111111000    00001111234688999999999999999976653322     224578999999


Q ss_pred             HHcCCCchhhhhhhh
Q 022605          240 EKARHPNVVQFVGAV  254 (294)
Q Consensus       240 ~~~~~~~iv~~L~~~  254 (294)
                      ++.||.++|++|+..
T Consensus       325 ~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         325 LRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHTCTTHHHHHTTS
T ss_pred             HHcCcHHHHHHHhCC
Confidence            999999999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1.3e-28  Score=199.11  Aligned_cols=196  Identities=20%  Similarity=0.179  Sum_probs=133.9

Q ss_pred             HHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Q 022605           85 VKGVEDLLNEGSDVNS-IDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK  163 (294)
Q Consensus        85 ~~~v~~Ll~~g~~~~~-~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  163 (294)
                      .|+|++||++|+|+|. .|.+|.||||+||..|+.+++++|++.|++++.++..+.++++.++..++.............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            4677888888888776 467788888888888888888888888888887777788888888877777766666654333


Q ss_pred             CC----CCCCCCccccCC---CCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHH
Q 022605          164 VP----KTKRTPMTVANP---REVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHEL  236 (294)
Q Consensus       164 ~~----~~~~t~l~~a~~---~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l  236 (294)
                      ..    ..+.++.+.+..   ....+.+.. .+.+++..+..|.|||+.++.+|...+++.|++.+......+..|.|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL  160 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLIT-ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL  160 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             ccccccccccccccccccccchhhhhhhhh-hcccccccCCCCCCcchhhcccCcceeeeeecccccccccccccccccc
Confidence            21    114444443321   122233322 2244555666677788888888888888887777766666666777888


Q ss_pred             HHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccccccccccC
Q 022605          237 TIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTS  289 (294)
Q Consensus       237 ~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~~n~~~~~~  289 (294)
                      |+|+..|+.+++++|+..++++        ...+..|.||||+|+.+++..+|
T Consensus       161 ~~A~~~g~~~~v~~Ll~~gad~--------n~~d~~g~Tpl~~A~~~~~~~iv  205 (209)
T d1ot8a_         161 FLAAREGSYEASKALLDNFANR--------EITDHMDRLPRDVASERLHHDIV  205 (209)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT--------TCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             chhccccHHHHHHHHHHCCCCC--------CCcCCCCCCHHHHHHHcCCHHHH
Confidence            8888888888888887777663        23556677888888888776654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-27  Score=200.80  Aligned_cols=219  Identities=21%  Similarity=0.137  Sum_probs=171.7

Q ss_pred             CCccccccCCCCCccccCCCCCCCCCCC-CCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCC---------------
Q 022605           40 NNMRFSFGRQSSLDPIRRSPVQDELTVP-ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDL---------------  103 (294)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~---------------  103 (294)
                      ++.++.++..++.+.++.++..+...+. .+..|.||||+|+..|+.+++++|++.+.+++..+.               
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSV   85 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCc
Confidence            4567778888999999999888876654 456799999999999999999999998776554443               


Q ss_pred             ------------------CCCcHHHHHHHcCcHHHHHHHHhCCCCCCCC----------CCCCCCHHHHHHHcCCHHHHH
Q 022605          104 ------------------DGRTALHIAACEGHVEVVKLLLSKKANIDAR----------DRWGSTAAADAKYYGNVEVYN  155 (294)
Q Consensus       104 ------------------~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~----------~~~g~t~L~~A~~~g~~~~v~  155 (294)
                                        .|.|++++|+..++..++..++....+++..          +..|.||||+|+..|+.++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  165 (285)
T d1wdya_          86 KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK  165 (285)
T ss_dssp             HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHH
T ss_pred             cccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHH
Confidence                              4556666777777777777777766555433          346899999999999999999


Q ss_pred             HHHHC-CCCCCCC---CCCCcccc---CCC----CCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhcc-CC
Q 022605          156 ILKAR-GAKVPKT---KRTPMTVA---NPR----EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKE-SH  223 (294)
Q Consensus       156 ~Ll~~-ga~~~~~---~~t~l~~a---~~~----~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-~~  223 (294)
                      +|++. |++++..   +.+++..+   +..    .++++|++.+ .+++..+..|.||||.|+..|+.++|++|++. +.
T Consensus       166 ~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~g-a~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~  244 (285)
T d1wdya_         166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI  244 (285)
T ss_dssp             HHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC
T ss_pred             HHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCC-CCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCC
Confidence            99965 7888654   55555432   222    3456666553 56677788899999999999999999999975 55


Q ss_pred             CChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCC
Q 022605          224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP  259 (294)
Q Consensus       224 ~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~  259 (294)
                      +....+..|.||||+|++.++.++|++|+..|++++
T Consensus       245 din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            555667789999999999999999999999999863

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.7e-27  Score=182.33  Aligned_cols=151  Identities=21%  Similarity=0.216  Sum_probs=134.8

Q ss_pred             CccccccCCCCCccccCCCCC-CCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHH
Q 022605           41 NMRFSFGRQSSLDPIRRSPVQ-DELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVE  119 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~  119 (294)
                      ..++.++..|+.+.++.++.. +......|..|.||||+|+ .|+.+++++|++++.+++..+..|.+||+.|+..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            456778888999999988875 4556677899999999886 58999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCC
Q 022605          120 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGIT  199 (294)
Q Consensus       120 ~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~  199 (294)
                      ++++++++|++++.+|..|+||||+|+..|+.+++++|+ .|++++                            ..+..|
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~----------------------------~~d~~G  133 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH----------------------------RRDARG  133 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT----------------------------CCCTTS
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc-cccccc----------------------------ccCCCC
Confidence            999999999999999999999999999999999999887 566653                            336678


Q ss_pred             CCceeeeeecCchhhhHhhhcc
Q 022605          200 KGSYQVAKWNGTKVWVKILDKE  221 (294)
Q Consensus       200 ~t~l~~A~~~g~~~~v~~Ll~~  221 (294)
                      .||||+|+..|+.+++++|++.
T Consensus       134 ~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         134 LTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999853

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=9.6e-27  Score=187.99  Aligned_cols=195  Identities=19%  Similarity=0.148  Sum_probs=159.2

Q ss_pred             cCCCCCCCCCCC-CCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC-CCC
Q 022605           56 RRSPVQDELTVP-ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN-IDA  133 (294)
Q Consensus        56 ~~~~~~~~~~~~-~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~  133 (294)
                      +.+++.+...+. .|.+|.||||+||..|+.++|++|++.|+++|.++..+.++++.++..++............. ...
T Consensus         6 ~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (209)
T d1ot8a_           6 SDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNA   85 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTC
T ss_pred             HHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            344444444443 477899999999999999999999999999999999999999999999998887777766433 334


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC---CCCCCccccCCCCC---cccccCcchhhhhcccCCCCCceeeee
Q 022605          134 RDRWGSTAAADAKYYGNVEVYNILKARGAKVPK---TKRTPMTVANPREV---PEYELNPLELQVRKADGITKGSYQVAK  207 (294)
Q Consensus       134 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~---~~~t~l~~a~~~~~---~~~l~~~~~~~~~~~~~~~~t~l~~A~  207 (294)
                      ....|.++.+.+.........+.|...+++++.   .|+|||++++..+.   ++.++.. ..+++..+..|.||||.|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g~TpL~~A~  164 (209)
T d1ot8a_          86 RMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMH-HANRDAQDDKDETPLFLAA  164 (209)
T ss_dssp             CCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHH
T ss_pred             ccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccc-cccccccccccccccchhc
Confidence            456788888888888888899999998887754   38889888865543   3333333 2455667788999999999


Q ss_pred             ecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhh
Q 022605          208 WNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFV  251 (294)
Q Consensus       208 ~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L  251 (294)
                      ..|+.++|++|++.|++....+..|.||+|+|+++|+.+||++|
T Consensus       165 ~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         165 REGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999988777788999999999999999999998

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.4e-26  Score=175.32  Aligned_cols=154  Identities=19%  Similarity=0.205  Sum_probs=140.6

Q ss_pred             CccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 022605           41 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEV  120 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~  120 (294)
                      +.++.++..++.+.++.+++.+......|..|.||||+|+ .|+.+++++|+++|++++.++..|.|||+.++..++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            4567788899999999999999998899999999999876 799999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCC
Q 022605          121 VKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITK  200 (294)
Q Consensus       121 v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~  200 (294)
                      +++|++.+.+++..+..|.+|+|+|+..++.+++++|+++|+.                           +....+..|.
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~---------------------------~~~~~d~~g~  134 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS---------------------------NVGHRNHKGD  134 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---------------------------CTTCCCTTSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc---------------------------cccccCCCCC
Confidence            9999999999999999999999999999999999999998752                           1133466788


Q ss_pred             CceeeeeecCchhhhHhhhccC
Q 022605          201 GSYQVAKWNGTKVWVKILDKES  222 (294)
Q Consensus       201 t~l~~A~~~g~~~~v~~Ll~~~  222 (294)
                      ||||+|+..|+.++|++|++.|
T Consensus       135 TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         135 TACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999999765

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.8e-26  Score=196.24  Aligned_cols=170  Identities=12%  Similarity=0.030  Sum_probs=121.4

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH-------HHHHHHHhCCCCCCCCCCCCCC
Q 022605           68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHV-------EVVKLLLSKKANIDARDRWGST  140 (294)
Q Consensus        68 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~-------~~v~~Ll~~gad~~~~~~~g~t  140 (294)
                      .|..|+||||+||..|+.++|++||++|+|++.+|..|+||||.||..++.       +++++|.   .+++..|..|+|
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t  179 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRT  179 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCC
Confidence            478899999999999999999999999999999999999999999987763       4555554   356677889999


Q ss_pred             HHHHHHHcCC----HH--------HHHHHHHCCCCCC----CCCCCCccccCCCCCc--ccccCc---chhhhhcccCCC
Q 022605          141 AAADAKYYGN----VE--------VYNILKARGAKVP----KTKRTPMTVANPREVP--EYELNP---LELQVRKADGIT  199 (294)
Q Consensus       141 ~L~~A~~~g~----~~--------~v~~Ll~~ga~~~----~~~~t~l~~a~~~~~~--~~l~~~---~~~~~~~~~~~~  199 (294)
                      |||+++..+.    ..        ++.++++.+....    ....++++.+......  ...+..   ....++..|..|
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G  259 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG  259 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTS
T ss_pred             HHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCC
Confidence            9999887554    22        3445555554431    1144444444322111  001100   122356778899


Q ss_pred             CCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHH
Q 022605          200 KGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVE  240 (294)
Q Consensus       200 ~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~  240 (294)
                      .||||+|++.|+.++|++|++.|++....++.|.||+++|+
T Consensus       260 ~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         260 DTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999999988888889999999884

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.3e-25  Score=169.96  Aligned_cols=96  Identities=22%  Similarity=0.223  Sum_probs=90.9

Q ss_pred             CCCCchhHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 022605           68 ENLDSTMQLLFMACR---GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD  144 (294)
Q Consensus        68 ~~~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~  144 (294)
                      .+..|+||||+|+..   |+.++|++|+++|+++|.+|..|+||||+||..|+.+++++|+++|+|++.+|..|+||||+
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~  120 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI  120 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHH
Confidence            466799999999984   78999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCC
Q 022605          145 AKYYGNVEVYNILKARGAK  163 (294)
Q Consensus       145 A~~~g~~~~v~~Ll~~ga~  163 (294)
                      |+..|+.+++++|++.++.
T Consensus       121 A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         121 AKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHhCCC
Confidence            9999999999999998765

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.7e-26  Score=184.80  Aligned_cols=211  Identities=19%  Similarity=0.125  Sum_probs=175.9

Q ss_pred             CCCCccccccCCCCCccccCCCC----CCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 022605           38 RRNNMRFSFGRQSSLDPIRRSPV----QDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAA  113 (294)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~  113 (294)
                      ++.++++.++..++.+.++.++.    .+......|.+|.||||+|+..|+.++|++|+++|++++..+..|.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            46677888888888887776653    55667778899999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----CCCCCCccccCCCCC---cc
Q 022605          114 CEGHVEVVKLLLSKKA----NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVP----KTKRTPMTVANPREV---PE  182 (294)
Q Consensus       114 ~~g~~~~v~~Ll~~ga----d~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~----~~~~t~l~~a~~~~~---~~  182 (294)
                      ..++.++++.+.....    ..+.......++|+.+...........|.....+..    ..+.+|++.|+....   .+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            9999999998877532    234556678899999999999999999998877653    338899999876543   33


Q ss_pred             cccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhh
Q 022605          183 YELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQ  249 (294)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~  249 (294)
                      +++..+ ......+..|.||||+|+..|+.+++++|++.|++....+..|.||||+|+++|+.+||+
T Consensus       162 ~~~~~~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         162 LLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhc-cccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            444332 456667788999999999999999999999999887777889999999999999988875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.1e-24  Score=165.09  Aligned_cols=122  Identities=20%  Similarity=0.224  Sum_probs=108.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCC------CCCCCcHHHHHHHc---CcHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 022605           74 MQLLFMACRGDVKGVEDLLNEGSDVNSI------DLDGRTALHIAACE---GHVEVVKLLLSKKANIDARDRWGSTAAAD  144 (294)
Q Consensus        74 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~------~~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~~~~g~t~L~~  144 (294)
                      ..|+.|+..+++..+..++..|+|++.+      +..|+||||+|+..   |+.++|++|+++|+|++.+|..|+||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            4567888999999999999999887754      67899999999974   78899999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCC
Q 022605          145 AKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESH  223 (294)
Q Consensus       145 A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~  223 (294)
                      |+..|+.+++++|+++|++++..                            +..|.||||+|+..|+.+++++|++.+.
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~----------------------------d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIA----------------------------NESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCC----------------------------CTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccccccccccccccccCcccccc----------------------------CCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            99999999999999999987543                            5678899999999999999999987654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=8.1e-25  Score=168.06  Aligned_cols=149  Identities=27%  Similarity=0.293  Sum_probs=135.4

Q ss_pred             CccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 022605           41 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEV  120 (294)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~  120 (294)
                      +.++.+++.|+.+.++.++..+.... .+..|.||||+|+..++.++++.++......+..+..+.++++.++...+.++
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccccccee
Confidence            45677888999999999998877544 68899999999999999999999999988877778889999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCcccccCcchhhhhcccCCCC
Q 022605          121 VKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITK  200 (294)
Q Consensus       121 v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~  200 (294)
                      +++++++|++++.+|..|+||||+|+..|+.+++++|+++|++++..                            +..|.
T Consensus        83 ~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~----------------------------d~~g~  134 (153)
T d1awcb_          83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ----------------------------SKFCK  134 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------------------------CTTSC
T ss_pred             eecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCccc----------------------------CCCCC
Confidence            99999999999999999999999999999999999999999987443                            66789


Q ss_pred             CceeeeeecCchhhhHhh
Q 022605          201 GSYQVAKWNGTKVWVKIL  218 (294)
Q Consensus       201 t~l~~A~~~g~~~~v~~L  218 (294)
                      ||||+|+.+|+.+++++|
T Consensus       135 Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         135 TAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHhC
Confidence            999999999999999876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2.4e-25  Score=190.35  Aligned_cols=182  Identities=14%  Similarity=0.038  Sum_probs=122.1

Q ss_pred             HhcCCCCCCC-CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHCCCC
Q 022605           92 LNEGSDVNSI-DLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN-------VEVYNILKARGAK  163 (294)
Q Consensus        92 l~~g~~~~~~-~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~ga~  163 (294)
                      ...+.++|.. |..|+||||+||..|+.++|++|+++|+|++.+|..|+||||+|+..++       .+++++|......
T Consensus        93 ~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~  172 (301)
T d1sw6a_          93 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL  172 (301)
T ss_dssp             TTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE
T ss_pred             CccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhh
Confidence            3457888865 8999999999999999999999999999999999999999999998765       3566776665666


Q ss_pred             CCCCCCCCccccCCCCC-------c--------ccccCcchhhhhcccCCCCCceeeeeecCchhhhHhhhcc---CCCC
Q 022605          164 VPKTKRTPMTVANPREV-------P--------EYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKE---SHKD  225 (294)
Q Consensus       164 ~~~~~~t~l~~a~~~~~-------~--------~~l~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~---~~~~  225 (294)
                      .|..|+||||+++....       .        .++................++++.+........+..+...   ....
T Consensus       173 ~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  252 (301)
T d1sw6a_         173 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML  252 (301)
T ss_dssp             ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT
T ss_pred             cccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCc
Confidence            67889999997743211       1        1111111122222233334555555544444433332100   0012


Q ss_pred             hHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCcccccccc
Q 022605          226 PERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLS  281 (294)
Q Consensus       226 ~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~t~l~~a~  281 (294)
                      +..+..|+||||+|++.|+.++|++|+..++++        ...+..|.|||++|+
T Consensus       253 n~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~--------~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         253 NAQDSNGDTCLNIAARLGNISIVDALLDYGADP--------FIANKSGLRPVDFGA  300 (301)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT--------TCCCTTSCCGGGGTC
T ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--------CCCCCCCCCHHHHcC
Confidence            334567999999999999999999999999985        346778999999997

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3e-25  Score=165.08  Aligned_cols=120  Identities=23%  Similarity=0.270  Sum_probs=111.2

Q ss_pred             CCCccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHHHHcCc
Q 022605           39 RNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGR-TALHIAACEGH  117 (294)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~-TpLh~A~~~g~  117 (294)
                      ..+.++.++..|+.+.++.+++.+...+..+..|.||||+|+ .|+.++|++|+++|++++.++..|. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            346678889999999999999998888888999999999764 7999999999999999999998765 69999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 022605          118 VEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKA  159 (294)
Q Consensus       118 ~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  159 (294)
                      .++|++|+++|+|++.+|..|+||||+|+..|+.+++++|+.
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999975

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=6.1e-25  Score=161.71  Aligned_cols=106  Identities=18%  Similarity=0.173  Sum_probs=92.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCccccCCCCCccccc
Q 022605          106 RTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYEL  185 (294)
Q Consensus       106 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~t~l~~a~~~~~~~~l~  185 (294)
                      .|||++|+..|+.++|++|+++|+|++..|..|+||||+|+..|+.+++++|+++|++++..                  
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~------------------   64 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP------------------   64 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCC------------------
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeec------------------
Confidence            48999999999999999999999999999999999999999999999999999999886443                  


Q ss_pred             CcchhhhhcccCCCCCceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHH
Q 022605          186 NPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIV  239 (294)
Q Consensus       186 ~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a  239 (294)
                                +..|.||||+|+.+|+.++|++|++.|++....+..|.||+|+|
T Consensus        65 ----------d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          65 ----------DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             ----------SSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             ----------ccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHH
Confidence                      45677888888888888888888888777766777788888876

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.7e-24  Score=160.92  Aligned_cols=120  Identities=25%  Similarity=0.224  Sum_probs=109.8

Q ss_pred             ccccccCCCCCccccCCCCCCCCCCCCCCCchhHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 022605           42 MRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVV  121 (294)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~TpLh~A~~~g~~~~v  121 (294)
                      .++.++..|+.+.++.+++.+...+..|.+|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.++|
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v   83 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC   83 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHH
Confidence            45677888999999999999988889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCC-CCCCHHHHH--HHcCCHHHHHHHHHCC
Q 022605          122 KLLLSKKANIDARDR-WGSTAAADA--KYYGNVEVYNILKARG  161 (294)
Q Consensus       122 ~~Ll~~gad~~~~~~-~g~t~L~~A--~~~g~~~~v~~Ll~~g  161 (294)
                      ++|+++|++++..+. .+.||++++  +..|+.+++++|+..+
T Consensus        84 ~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          84 KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999998774 588887765  5778999999999753

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.39  E-value=0.039  Score=44.34  Aligned_cols=87  Identities=23%  Similarity=0.471  Sum_probs=58.5

Q ss_pred             cccCcchhhhhcccCCCC-Cceeeeeec--CchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCC
Q 022605          183 YELNPLELQVRKADGITK-GSYQVAKWN--GTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP  259 (294)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~-t~l~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~  259 (294)
                      +.++..++.+...-+.|. ...+.|...  |..-+||.+.. ...   ..+.....+.......|++||+++..+.....
T Consensus        12 wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~-~~~---~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~   87 (287)
T d1opja_          12 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTM---EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP   87 (287)
T ss_dssp             TBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCT-TCS---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             cEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECC-ccc---hHHHHHHHHHHHHhCCCCCEecCCccEeeCCe
Confidence            334433444444455554 456677654  34455676532 111   22345667888888999999999999988899


Q ss_pred             eEEEEecCCCCCCC
Q 022605          260 MMIVLEYHAKVSMP  273 (294)
Q Consensus       260 l~~~~e~~~~g~l~  273 (294)
                      +++++||+..|++.
T Consensus        88 ~~iv~E~~~~g~l~  101 (287)
T d1opja_          88 FYIITEFMTYGNLL  101 (287)
T ss_dssp             CEEEEECCTTCBHH
T ss_pred             eEEEeecccCcchH
Confidence            99999999999865

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.18  E-value=0.03  Score=44.39  Aligned_cols=70  Identities=24%  Similarity=0.437  Sum_probs=50.7

Q ss_pred             Cceeeeeec-CchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCc
Q 022605          201 GSYQVAKWN-GTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPI  274 (294)
Q Consensus       201 t~l~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~  274 (294)
                      ...+.|... +..-+||.+- ..   ....+++...+.......|++||+++..+..+...++++||+..|+|..
T Consensus        19 g~Vy~~~~~~~~~vAvK~i~-~~---~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~~   89 (263)
T d1sm2a_          19 GLVHLGYWLNKDKVAIKTIR-EG---AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSD   89 (263)
T ss_dssp             CCEEEEEETTTEEEEEEECC-SS---SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHH
T ss_pred             eEEEEEEECCCCEEEEEEEC-CC---cCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCCcHHH
Confidence            345666654 3344566653 22   1223456677788888899999999999988899999999999998753

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.025  Score=44.91  Aligned_cols=69  Identities=32%  Similarity=0.502  Sum_probs=49.8

Q ss_pred             CceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcC-CCCeEEEEecCCCCCCCc
Q 022605          201 GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ-NIPMMIVLEYHAKVSMPI  274 (294)
Q Consensus       201 t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~-~~~l~~~~e~~~~g~l~~  274 (294)
                      +..+.|...|..-+||.+-..     ...+.....+....+..|++|++++..+.. +..+++++||+.+|++..
T Consensus        21 g~Vy~~~~~~~~vAvK~i~~~-----~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~   90 (262)
T d1byga_          21 GDVMLGDYRGNKVAVKCIKND-----ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVD   90 (262)
T ss_dssp             CEEEEEEETTEEEEEEECCCC-----C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHH
T ss_pred             eEEEEEEECCeEEEEEEECcH-----HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCCCCHHH
Confidence            567778888887777776321     112345567778888899999999987744 456899999999998763

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.98  E-value=0.1  Score=41.63  Aligned_cols=75  Identities=19%  Similarity=0.349  Sum_probs=49.6

Q ss_pred             cCCCC-CceeeeeecCc----hhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCC
Q 022605          196 DGITK-GSYQVAKWNGT----KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKV  270 (294)
Q Consensus       196 ~~~~~-t~l~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g  270 (294)
                      -+.|. ...+.|.....    ..+||.+- .. ........+...+.+..+..|++||+++..+. ...++++|||++.|
T Consensus        17 iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~-~~-~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~-~~~~~lvmE~~~~g   93 (285)
T d1u59a_          17 LGCGNFGSVRQGVYRMRKKQIDVAIKVLK-QG-TEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEALMLVMEMAGGG   93 (285)
T ss_dssp             EECCTTEEEEEEEEC---CCEEEEEEEEC-SS-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECCTTE
T ss_pred             EecccCeEEEEEEEecCCCcEEEEEEEEC-hh-cCHHHHHHHHHHHHHHHhCCCCCEeeEeeeec-cCeEEEEEEeCCCC
Confidence            34443 34556644322    23456653 22 33444455677888888999999999998765 45789999999999


Q ss_pred             CCC
Q 022605          271 SMP  273 (294)
Q Consensus       271 ~l~  273 (294)
                      +|.
T Consensus        94 ~L~   96 (285)
T d1u59a_          94 PLH   96 (285)
T ss_dssp             EHH
T ss_pred             cHH
Confidence            875

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.83  E-value=0.052  Score=42.82  Aligned_cols=69  Identities=28%  Similarity=0.520  Sum_probs=50.3

Q ss_pred             CceeeeeecCc-hhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          201 GSYQVAKWNGT-KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       201 t~l~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      ...+.|..++. .-+||.+- ....   ..++....+.......|++||+++..+..+..+++++||+..|++.
T Consensus        18 g~Vy~~~~~~~~~vAvK~l~-~~~~---~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g~l~   87 (258)
T d1k2pa_          18 GVVKYGKWRGQYDVAIKMIK-EGSM---SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLL   87 (258)
T ss_dssp             EEEEEEEETTTEEEEEEEEE-SSSS---CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTTEEHH
T ss_pred             eEEEEEEECCCCEEEEEEEC-cCcC---CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCCCcHH
Confidence            34566666544 34467654 2222   2245667788888889999999999998888999999999998864

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.84  E-value=0.073  Score=42.36  Aligned_cols=70  Identities=31%  Similarity=0.572  Sum_probs=48.2

Q ss_pred             CceeeeeecCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          201 GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       201 t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      ...+.|..++ ..+||.+-.. .........+...+.......|++||+++..+. ++.+++++||+.+|+|.
T Consensus        22 g~Vy~~~~~~-~vAvK~~~~~-~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~-~~~~~lv~Ey~~~g~L~   91 (276)
T d1uwha_          22 GTVYKGKWHG-DVAVKMLNVT-APTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLAIVTQWCEGSSLY   91 (276)
T ss_dssp             CEEEEEESSS-EEEEEECCCS-SCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEECCCEEEHH
T ss_pred             cEEEEEEECC-EEEEEEEEcc-cCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEe-ccEEEEEEecCCCCCHH
Confidence            3455665444 3466666422 233334455667788888889999999987654 56789999999999875

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.70  E-value=0.095  Score=41.52  Aligned_cols=69  Identities=28%  Similarity=0.411  Sum_probs=48.2

Q ss_pred             CceeeeeecCch-hhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCc
Q 022605          201 GSYQVAKWNGTK-VWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPI  274 (294)
Q Consensus       201 t~l~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~  274 (294)
                      .-.+.|...+.. .+||.+- ....   ..+.....+....+..|++||+++..+. +.++++++||+..|++..
T Consensus        27 g~Vy~~~~~~~~~vAvK~~~-~~~~---~~~~~~~E~~~l~~l~HpnIv~~~g~~~-~~~~~iv~Ey~~~g~L~~   96 (272)
T d1qpca_          27 GEVWMGYYNGHTKVAVKSLK-QGSM---SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYMENGSLVD   96 (272)
T ss_dssp             EEEEEEEETTTEEEEEEEEC-TTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCTTCBHHH
T ss_pred             cEEEEEEECCCCEEEEEEEc-cCcC---CHHHHHHHHHHHHhCCCCCEeEEEeeec-cCCeEEEEEeCCCCcHHH
Confidence            346667666543 4466553 2211   2234667888888999999999998654 567899999999999753

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.69  E-value=0.18  Score=39.88  Aligned_cols=88  Identities=24%  Similarity=0.377  Sum_probs=51.3

Q ss_pred             CcchhhhhcccCCCC-CceeeeeecCch-----hhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCC
Q 022605          186 NPLELQVRKADGITK-GSYQVAKWNGTK-----VWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP  259 (294)
Q Consensus       186 ~~~~~~~~~~~~~~~-t~l~~A~~~g~~-----~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~  259 (294)
                      +..++.+...-+.|. +..+.|...+..     -+||.+...........+.+...+.......|++||++...+. ++.
T Consensus         6 ~~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~-~~~   84 (273)
T d1u46a_           6 GEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVL-TPP   84 (273)
T ss_dssp             CGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSS
T ss_pred             chHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe-ecc
Confidence            333444444444443 445566544321     2355554333333344456678888889999999999998775 457


Q ss_pred             eEEEEecCCCCCCCc
Q 022605          260 MMIVLEYHAKVSMPI  274 (294)
Q Consensus       260 l~~~~e~~~~g~l~~  274 (294)
                      +++++||+..|++..
T Consensus        85 ~~lv~e~~~~~~l~~   99 (273)
T d1u46a_          85 MKMVTELAPLGSLLD   99 (273)
T ss_dssp             CEEEEECCTTCBHHH
T ss_pred             hheeeeeecCcchhh
Confidence            889999999988663

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.16  E-value=0.13  Score=41.29  Aligned_cols=48  Identities=31%  Similarity=0.563  Sum_probs=40.5

Q ss_pred             hHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          226 PERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       226 ~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      ....+.+...+.+..+..|++||+++..+..+..++++|||+.+|+|.
T Consensus        68 ~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~  115 (299)
T d1jpaa_          68 EKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLD  115 (299)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTEEHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEecCCCcce
Confidence            333445667788888889999999999998889999999999999875

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.14  E-value=0.13  Score=41.42  Aligned_cols=90  Identities=18%  Similarity=0.324  Sum_probs=59.8

Q ss_pred             cccCcchhhhhcccCCCC-CceeeeeecC-------chhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhh
Q 022605          183 YELNPLELQVRKADGITK-GSYQVAKWNG-------TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAV  254 (294)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~-t~l~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~  254 (294)
                      +.+...++.+...-+.|. .-.+.|...+       ..-+||.+...  ............+......+|++||++...+
T Consensus        15 ~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~--~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~   92 (308)
T d1p4oa_          15 WEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA--ASMRERIEFLNEASVMKEFNCHHVVRLLGVV   92 (308)
T ss_dssp             TBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTT--SCHHHHHHHHHHHHHGGGCCCTTBCCEEEEE
T ss_pred             eeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcc--cChHHHHHHHHHHHHHHHcCCCCEeeeeeEE
Confidence            334444444444445553 4466665543       23456655321  2333334566788888889999999999999


Q ss_pred             cCCCCeEEEEecCCCCCCCc
Q 022605          255 TQNIPMMIVLEYHAKVSMPI  274 (294)
Q Consensus       255 ~~~~~l~~~~e~~~~g~l~~  274 (294)
                      ..+...++++||+.+|++..
T Consensus        93 ~~~~~~~lv~e~~~~g~l~~  112 (308)
T d1p4oa_          93 SQGQPTLVIMELMTRGDLKS  112 (308)
T ss_dssp             CSSSSCEEEEECCTTCBHHH
T ss_pred             ecCCceeEEEeecCCCCHHH
Confidence            98999999999999998753

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.78  E-value=0.22  Score=39.70  Aligned_cols=81  Identities=32%  Similarity=0.473  Sum_probs=53.5

Q ss_pred             chhhhhcccCCCC-CceeeeeecCc-hhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEe
Q 022605          188 LELQVRKADGITK-GSYQVAKWNGT-KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE  265 (294)
Q Consensus       188 ~~~~~~~~~~~~~-t~l~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e  265 (294)
                      .++.+...-+.|. .-.+.|...+. .-+||.+- .....   .+.+...+....+.+|++||+++..+. +.++++++|
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~-~~~~~---~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~E   91 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMS---PEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTE   91 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECC-TTSSC---HHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEC
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEEC-cccCC---HHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEEE
Confidence            3444444445543 44566665554 33456653 22222   245677888899999999999998774 567899999


Q ss_pred             cCCCCCCC
Q 022605          266 YHAKVSMP  273 (294)
Q Consensus       266 ~~~~g~l~  273 (294)
                      |+..|++.
T Consensus        92 y~~~g~l~   99 (285)
T d1fmka3          92 YMSKGSLL   99 (285)
T ss_dssp             CCTTCBHH
T ss_pred             ecCCCchh
Confidence            99999754

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.37  E-value=0.04  Score=43.64  Aligned_cols=43  Identities=23%  Similarity=0.459  Sum_probs=37.0

Q ss_pred             hhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          231 AFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       231 ~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      .....+.+.....|++||+++.....+..++++|||+..|++.
T Consensus        52 ~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivmEy~~~g~L~   94 (263)
T d2j4za1          52 QLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY   94 (263)
T ss_dssp             HHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHH
T ss_pred             HHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEEeecCCCcHH
Confidence            3456677788889999999999988888899999999999874

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.28  E-value=0.2  Score=40.70  Aligned_cols=42  Identities=26%  Similarity=0.505  Sum_probs=34.4

Q ss_pred             hhhHHHHHHHc-CCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          232 FTHELTIVEKA-RHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       232 ~~t~l~~a~~~-~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      ........... +|++||+++..+.....++++|||+.+|+|.
T Consensus        87 ~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~  129 (325)
T d1rjba_          87 LMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLL  129 (325)
T ss_dssp             HHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHH
T ss_pred             HHHHHHHHHHhcCCCcEeEEEEEEeeCCeEEEEEEcCCCCcHH
Confidence            34455555554 8999999999999889999999999999875

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.83  E-value=0.12  Score=40.83  Aligned_cols=72  Identities=25%  Similarity=0.325  Sum_probs=49.7

Q ss_pred             ceeeeee--cCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCC----eEEEEecCCCCCCC
Q 022605          202 SYQVAKW--NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP----MMIVLEYHAKVSMP  273 (294)
Q Consensus       202 ~l~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~----l~~~~e~~~~g~l~  273 (294)
                      -.+.|..  .|..-++|.+-.....+..........+.......|++||+++.....+..    ++++|||+..|++.
T Consensus        22 ~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~   99 (277)
T d1o6ya_          22 EVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLR   99 (277)
T ss_dssp             EEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHH
T ss_pred             EEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEEEECCCCCEeh
Confidence            3455542  355666777654444445545556677888888999999999977654432    78999999988765

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.76  E-value=0.39  Score=38.26  Aligned_cols=70  Identities=17%  Similarity=0.313  Sum_probs=49.4

Q ss_pred             ceeeeee--cCchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCc
Q 022605          202 SYQVAKW--NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPI  274 (294)
Q Consensus       202 ~l~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~  274 (294)
                      -.+.|..  .|..-++|.+.......   .+.....+.+.....|++||+++.....+..++++|||+.+|+|..
T Consensus        35 ~Vy~a~~~~~~~~vAvK~~~~~~~~~---~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~  106 (293)
T d1yhwa1          35 TVYTAMDVATGQEVAIRQMNLQQQPK---KELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTD  106 (293)
T ss_dssp             EEEEEEBTTTCCEEEEEEEEGGGCSC---HHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHH
T ss_pred             EEEEEEECCCCCEEEEEEEecccChH---HHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecCCCcHHH
Confidence            3455543  35555666654222111   2334567778888999999999999888889999999999998763

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.59  E-value=0.085  Score=42.74  Aligned_cols=71  Identities=21%  Similarity=0.328  Sum_probs=50.2

Q ss_pred             ceeeeeec--CchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCC
Q 022605          202 SYQVAKWN--GTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM  272 (294)
Q Consensus       202 ~l~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l  272 (294)
                      -.+.|...  |..-+||.+.................+.+.....|++||+++.....+..+++++||+..|++
T Consensus        30 ~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l  102 (309)
T d1u5ra_          30 AVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSAS  102 (309)
T ss_dssp             EEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHH
T ss_pred             EEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEEecCCCch
Confidence            45565433  445566766433333333334556778888888999999999998888889999999988765

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.37  E-value=0.1  Score=41.83  Aligned_cols=72  Identities=17%  Similarity=0.218  Sum_probs=48.0

Q ss_pred             ceeeeeec--CchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          202 SYQVAKWN--GTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       202 ~l~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      -.+.|...  |..-+||.+-................+.+.....|++|+++......+..++++|||+.+|+|.
T Consensus        23 ~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~   96 (288)
T d1uu3a_          23 TVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELL   96 (288)
T ss_dssp             EEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEECCCTTEEHH
T ss_pred             EEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEEEccCCCCHH
Confidence            34555433  4455566553211111111233456777888889999999999888888899999999998875

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.89  E-value=0.24  Score=39.08  Aligned_cols=71  Identities=25%  Similarity=0.249  Sum_probs=47.4

Q ss_pred             ceeeeeec--CchhhhHhhhccCCCChHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCCc
Q 022605          202 SYQVAKWN--GTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPI  274 (294)
Q Consensus       202 ~l~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~~  274 (294)
                      -.+.|...  |..-++|.+-...  ...........+.+.....|++||+++.....+..++++|||+..|+|..
T Consensus        20 ~V~~~~~~~~~~~vAiK~i~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~   92 (271)
T d1nvra_          20 EVQLAVNRVTEEAVAVKIVDMKR--AVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD   92 (271)
T ss_dssp             EEEEEEETTTCCEEEEEEEECC---------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGG
T ss_pred             EEEEEEECCCCCEEEEEEEehhh--cchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEeccCCCcHHH
Confidence            34555433  4455566653221  11222345567778888899999999999888888999999999998863

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.01  E-value=0.43  Score=37.40  Aligned_cols=47  Identities=21%  Similarity=0.426  Sum_probs=37.5

Q ss_pred             hHhhhhhhhHHHHHHHcCCCchhhhhhhhcCCCCeEEEEecCCCCCCC
Q 022605          226 PERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMP  273 (294)
Q Consensus       226 ~~~~~~~~t~l~~a~~~~~~~iv~~L~~~~~~~~l~~~~e~~~~g~l~  273 (294)
                      ..........+....+..|++||+++..+. +..+++++||+..|++.
T Consensus        49 ~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~iv~E~~~~g~l~   95 (273)
T d1mp8a_          49 DSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCTLGELR   95 (273)
T ss_dssp             HHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEEEECCTTEEHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEEEEEeccCCcHH
Confidence            333445667888888889999999998775 56789999999988764