Citrus Sinensis ID: 022610

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MASCFRGGSGISSISSLPSLPHRTRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSLTYNF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mascfrggsgississlpslphrtrlsvlpvkclssrqsrdsdsdsdlrttpspsstsgfspygwcagiggvgfLETTYLSYLKltnsdafcpiggascgdvlnsdyavvfgvplpfIGMFAYGLVAVLGLLLArksfpigineSYGRLILLGSSTSMAAASAYFLYILSTnfsgatcsYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTsyssiqplsssvaeanlpffeteittssspFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSLTYNF
Flexible Loop (DISEMBL)
mascfrggsgississlpslphrtrlsvlpvkclssrqsrdsdsdsdlrttpspsstsgfspygWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSLTYNF
Low Complexity Region (SEG)
MASCFRGgsgississlpslpHRTRLSVLPVKCLssrqsrdsdsdsdlrttpspsstsgfspYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYglvavlglllaRKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCltsallsfslffislkefsVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSLTYNF
Disordered region (IsUnstruct)
***********************************************************FSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ******
Disordered Region (DISOPRED)
**S********************************************************FSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSS******************************LAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ***Y**
Disordered Region (DISEMBL)
**********ISSISSLPSLPHRTRLSVLPVKC*************************GFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSLTYNF
Disordered Region (DISPRO)
********S**SSISSLPSLPHRTRLSVLPV*C*************************GFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQP********NLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSLT*NF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASCFRGGSGISSISSLPSLPHRTRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSLTYNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
224133580	329	predicted protein [Populus trichocarpa]	0.772	0.689	0.718	2e-91
255579785	322	conserved hypothetical protein [Ricinus	0.867	0.791	0.667	5e-91
296088207	295	unnamed protein product [Vitis vinifera]	0.761	0.759	0.743	6e-90
359497224	298	PREDICTED: uncharacterized protein LOC10	0.751	0.741	0.738	2e-89
147782976	418	hypothetical protein VITISV_010788 [Viti	0.761	0.535	0.724	5e-89
449434454	405	PREDICTED: uncharacterized protein LOC10	0.758	0.550	0.665	9e-82
449491279	380	PREDICTED: uncharacterized LOC101218748	0.768	0.594	0.656	2e-81
21593770	375	unknown [Arabidopsis thaliana]	0.931	0.730	0.547	1e-75
18419647	376	NAD(P)H dehydrogenase (quinone)s [Arabid	0.931	0.728	0.547	2e-75
297798346	375	hypothetical protein ARALYDRAFT_491070 [	0.772	0.605	0.612	4e-74

>gi|224133580|ref|XP_002327630.1| predicted protein [Populus trichocarpa] gi|222836715|gb|EEE75108.1| predicted protein [Populus trichocarpa]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 163/227 (71%), Positives = 192/227 (84%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFA 122
           Y WCAG+GGVGFLET YL++LKLTNSDAFCPIGG +CGDVL+SDYAVVFGVPLP IGM +
Sbjct: 36  YNWCAGLGGVGFLETAYLTFLKLTNSDAFCPIGGGNCGDVLSSDYAVVFGVPLPLIGMIS 95

Query: 123 YGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 182
           YGLVA LGL  + K FP GI ES GRL+LLG +TSMA AS YFLYILST FSG +C+YCL
Sbjct: 96  YGLVAALGLQWSGKKFPFGIEESNGRLLLLGCTTSMAVASGYFLYILSTKFSGTSCTYCL 155

Query: 183 TSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLP 242
            SA LSFSLFFI+LK+F +EEIQK LG+QLCIAS+V+ +L+TSY+++Q  SSSVA+ NL 
Sbjct: 156 LSAFLSFSLFFITLKDFGLEEIQKFLGLQLCIASVVIFSLNTSYATLQRASSSVADINLE 215

Query: 243 FFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS 289
           +F TEITT SSPFA+SLA+HL + GAKMYGAFWCSHC EQKQ+  + 
Sbjct: 216 YFTTEITTPSSPFAISLARHLQSTGAKMYGAFWCSHCQEQKQMFGKE 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579785|ref|XP_002530730.1| conserved hypothetical protein [Ricinus communis] gi|223529694|gb|EEF31636.1| conserved hypothetical protein [Ricinus communis]

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 171/256 (66%), Positives = 206/256 (80%), Gaps = 1/256 (0%)

Query: 34  LSSRQSRDSDSDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCP 93
           +SS  + D++S+    TT S  S    S   WCA +G +GFLET YL+YLKLTNSDAFCP
Sbjct: 1   MSSGPTSDTESEPK-TTTSSSFSNWSISTNSWCAALGSIGFLETAYLTYLKLTNSDAFCP 59

Query: 94  IGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLG 153
           IGG SCGDVLNSDYAVVFGVPLP IG+ AYGLVA LGLLL  K+ P GI E+ GRLILL 
Sbjct: 60  IGGGSCGDVLNSDYAVVFGVPLPVIGIVAYGLVASLGLLLPGKNLPFGIGEANGRLILLA 119

Query: 154 SSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLC 213
           S+TSMAAAS YFLYILST FSG +CSYC+ SA LSF+LFFI+LK+F +++IQKVLG+Q+C
Sbjct: 120 STTSMAAASGYFLYILSTKFSGVSCSYCIFSAFLSFTLFFITLKDFGLQDIQKVLGLQIC 179

Query: 214 IASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGA 273
           +ASLVVAAL+ SY +  P+SSS+AE +LP+   EIT +SSPFALSLA+HL +IGAK+YGA
Sbjct: 180 VASLVVAALNASYGTSPPISSSLAEVDLPYVTYEITATSSPFALSLARHLKSIGAKIYGA 239

Query: 274 FWCSHCLEQKQVLHQS 289
           FWCSHCLEQKQ+  + 
Sbjct: 240 FWCSHCLEQKQMFGKD 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088207|emb|CBI35722.3| unnamed protein product [Vitis vinifera]

 Score =  336 bits (862), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 168/226 (74%), Positives = 195/226 (86%), Gaps = 2/226 (0%)

Query: 65  WCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYG 124
           WCAG+GG+GFLETTYL+YLKLTNSDAFCPIGG +C DVLNSDYA VFGVPLP IGM AYG
Sbjct: 72  WCAGLGGLGFLETTYLTYLKLTNSDAFCPIGGGTCSDVLNSDYAAVFGVPLPLIGMAAYG 131

Query: 125 LVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTS 184
           LV +LGL LA K+ P GI E+ GRL+LLG++TSM+AASAYFLYILST F GA+CSYCL S
Sbjct: 132 LVTILGLQLAGKNVPFGIGETNGRLLLLGTTTSMSAASAYFLYILSTQFPGASCSYCLVS 191

Query: 185 ALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFF 244
           ALLSFSLFF SLK+F +++IQK + +QLCIASLVVA LSTSY+++ P+S+S+AE +L  F
Sbjct: 192 ALLSFSLFFTSLKDFQLKDIQKTVVLQLCIASLVVATLSTSYNTL-PVSTSLAEIDLQPF 250

Query: 245 ETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSL 290
             EITT SSP ALSLAKHL +IGAKMYGAFWCSHC+EQKQV H SL
Sbjct: 251 TVEITTQSSPLALSLAKHLRSIGAKMYGAFWCSHCVEQKQV-HLSL 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497224|ref|XP_002271041.2| PREDICTED: uncharacterized protein LOC100264333 [Vitis vinifera]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 164/222 (73%), Positives = 192/222 (86%), Gaps = 1/222 (0%)

Query: 65  WCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYG 124
           WCAG+GG+GFLETTYL+YLKLTNSDAFCPIGG +C DVLNSDYA VFGVPLP IGM AYG
Sbjct: 72  WCAGLGGLGFLETTYLTYLKLTNSDAFCPIGGGTCSDVLNSDYAAVFGVPLPLIGMAAYG 131

Query: 125 LVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTS 184
           LV +LGL LA K+ P GI E+ GRL+LLG++TSM+AASAYFLYILST F GA+CSYCL S
Sbjct: 132 LVTILGLQLAGKNVPFGIGETNGRLLLLGTTTSMSAASAYFLYILSTQFPGASCSYCLVS 191

Query: 185 ALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFF 244
           ALLSFSLFF SLK+F +++IQK + +QLCIASLVVA LSTSY+++ P+S+S+AE +L  F
Sbjct: 192 ALLSFSLFFTSLKDFQLKDIQKTVVLQLCIASLVVATLSTSYNTL-PVSTSLAEIDLQPF 250

Query: 245 ETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVL 286
             EITT SSP ALSLAKHL +IGAKMYGAFWCSHC+EQKQ +
Sbjct: 251 TVEITTQSSPLALSLAKHLRSIGAKMYGAFWCSHCVEQKQAV 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782976|emb|CAN72958.1| hypothetical protein VITISV_010788 [Vitis vinifera]

 Score =  333 bits (854), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 163/225 (72%), Positives = 192/225 (85%), Gaps = 1/225 (0%)

Query: 65  WCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYG 124
           WCAG+GG+GFLETTYL+YLKLTNSDAFCPIGG +C DVLNSDYA VFGVPLP IGM AYG
Sbjct: 129 WCAGLGGLGFLETTYLTYLKLTNSDAFCPIGGGTCSDVLNSDYAAVFGVPLPLIGMAAYG 188

Query: 125 LVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTS 184
           LV +L L LA K+ P GI E+ GRL+LLG++TSM+AASAYFLYILST F GA+CSYCL S
Sbjct: 189 LVTILSLQLAGKNVPFGIGETNGRLLLLGTTTSMSAASAYFLYILSTQFPGASCSYCLVS 248

Query: 185 ALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFF 244
           ALLSFSLFF SLK+F +++IQK + +QLCIASLVVA LSTSY+++ P+S+S+AE +L  F
Sbjct: 249 ALLSFSLFFTSLKDFQLKDIQKTVVLQLCIASLVVATLSTSYNTL-PVSTSLAEIDLQPF 307

Query: 245 ETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS 289
             EITT SSP ALSLAKHL +IGAKMYGAFWCSHC+EQKQ+  + 
Sbjct: 308 TVEITTQSSPLALSLAKHLRSIGAKMYGAFWCSHCVEQKQMFGRE 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434454|ref|XP_004135011.1| PREDICTED: uncharacterized protein LOC101218748 [Cucumis sativus]

 Score =  309 bits (792), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 149/224 (66%), Positives = 180/224 (80%), Gaps = 1/224 (0%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFA 122
           Y  CA +GG+GF+ET YLSYLKLT+S AFCPIGG  C +VLNSDYA VFGVPLP IGM A
Sbjct: 116 YTLCAALGGIGFVETAYLSYLKLTDSAAFCPIGGGGCDNVLNSDYAAVFGVPLPLIGMVA 175

Query: 123 YGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 182
           YGLV  + L LA K  P GI+ES GRL+LLG++TSMAAASAYFLYIL+T FSG TCSYCL
Sbjct: 176 YGLVGAVSLQLAAKKLPFGIDESGGRLVLLGTTTSMAAASAYFLYILNTQFSGVTCSYCL 235

Query: 183 TSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLP 242
            SALLSFSLFF +LK+F ++E ++ L  Q+ +A +V   LSTSY S+ P+S S AE +LP
Sbjct: 236 VSALLSFSLFFATLKDFGLDESRRRLATQIIMAGIVFFTLSTSYGSL-PISRSAAELDLP 294

Query: 243 FFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVL 286
           +FETE+T  S+P A+SLAKHL +IGAKMYGAFWCSHC+EQK++ 
Sbjct: 295 YFETELTKPSTPLAISLAKHLQSIGAKMYGAFWCSHCVEQKEMF 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491279|ref|XP_004158848.1| PREDICTED: uncharacterized LOC101218748 [Cucumis sativus]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/227 (65%), Positives = 181/227 (79%), Gaps = 1/227 (0%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFA 122
           Y  CA +GG+GF+ET YLSYLKLT+S AFCPIGG  C +VLNSDYA VFGVPLP IGM A
Sbjct: 91  YTLCAALGGIGFVETAYLSYLKLTDSAAFCPIGGGGCDNVLNSDYAAVFGVPLPLIGMVA 150

Query: 123 YGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 182
           YGLV  + L LA K  P GI+ES GRL+LLG++TSMAAASAYFLYIL+T FSG TCSYCL
Sbjct: 151 YGLVGAVSLQLAAKKLPFGIDESGGRLVLLGTTTSMAAASAYFLYILNTQFSGVTCSYCL 210

Query: 183 TSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLP 242
            SALLSFSLFF +LK+F ++E ++ L  Q+ +A +V   LSTSY S+ P+S S AE +LP
Sbjct: 211 VSALLSFSLFFATLKDFGLDESRRRLATQIIMAGIVFFTLSTSYGSL-PISRSAAELDLP 269

Query: 243 FFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS 289
           +FETE+T  S+P A+SLAKHL +IGAKMYGAFWCSHC+EQK++  + 
Sbjct: 270 YFETELTKPSTPLAISLAKHLQSIGAKMYGAFWCSHCVEQKEMFGRE 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593770|gb|AAM65737.1| unknown [Arabidopsis thaliana]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/283 (54%), Positives = 204/283 (72%), Gaps = 9/283 (3%)

Query: 16  SLPSLPHR-----TRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSP----YGWC 66
           S+ S P R      R   +P+KC SS      DS   L ++ S S++   +     Y W 
Sbjct: 23  SVTSYPRRFEVSDRRFPAIPIKCSSSEPENGEDSAPSLSSSSSSSTSEVSTSNSSTYNWY 82

Query: 67  AGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLV 126
            GIGG+G L+T YL+YLK+T SDAFCPIGG +CGDVLNSDYAVVFGVPLP IG   YG+V
Sbjct: 83  TGIGGIGMLDTAYLTYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVMYGVV 142

Query: 127 AVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSAL 186
             L   L   + P GI++S GR  L G +T+MA+ASAYFLYILST  SG++C YCL SA 
Sbjct: 143 TALSAELGEGNLPFGISKSNGRFALFGITTAMASASAYFLYILSTKLSGSSCLYCLVSAF 202

Query: 187 LSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFET 246
           LSFSLFF+S+K+  ++EIQ+V+G+Q+C+A +VVA+L+ SYS+ QP+ S   +  LP+F T
Sbjct: 203 LSFSLFFLSVKDVKLQEIQQVVGLQICLAIIVVASLTASYSTAQPIPSRSGDIELPYFRT 262

Query: 247 EITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS 289
           EI++SSSP+A++LAKHL++IGAKMYGAFWCSHCLEQK++  + 
Sbjct: 263 EISSSSSPYAIALAKHLNSIGAKMYGAFWCSHCLEQKEMFGRE 305

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18419647|ref|NP_567988.1| NAD(P)H dehydrogenase (quinone)s [Arabidopsis thaliana] gi|20466524|gb|AAM20579.1| putative protein [Arabidopsis thaliana] gi|22136450|gb|AAM91303.1| putative protein [Arabidopsis thaliana] gi|332661159|gb|AEE86559.1| NAD(P)H dehydrogenase (quinone)s [Arabidopsis thaliana]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 155/283 (54%), Positives = 204/283 (72%), Gaps = 9/283 (3%)

Query: 16  SLPSLPHR-----TRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSP----YGWC 66
           S+ S P R      R   +P+KC SS      DS   L ++ S S++   +     Y W 
Sbjct: 24  SVTSYPRRFEVSDRRFPAIPIKCSSSEPENGEDSAPSLSSSSSSSTSEVSTSNSSTYNWY 83

Query: 67  AGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLV 126
            GIGG+G L+T YL+YLK+T SDAFCPIGG +CGDVLNSDYAVVFGVPLP IG   YG+V
Sbjct: 84  TGIGGIGMLDTAYLTYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVMYGVV 143

Query: 127 AVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSAL 186
             L   L   + P GI++S GR  L G +T+MA+ASAYFLYILST  SG++C YCL SA 
Sbjct: 144 TALSAELGEGNLPFGISKSNGRFALFGITTAMASASAYFLYILSTKLSGSSCLYCLVSAF 203

Query: 187 LSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFET 246
           LSFSLFF+S+K+  ++EIQ+V+G+Q+C+A +VVA+L+ SYS+ QP+ S   +  LP+F T
Sbjct: 204 LSFSLFFLSVKDVKLQEIQQVVGLQICLAIIVVASLTASYSTAQPIPSRSGDIELPYFRT 263

Query: 247 EITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS 289
           EI++SSSP+A++LAKHL++IGAKMYGAFWCSHCLEQK++  + 
Sbjct: 264 EISSSSSPYAIALAKHLNSIGAKMYGAFWCSHCLEQKEMFGRE 306

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798346|ref|XP_002867057.1| hypothetical protein ARALYDRAFT_491070 [Arabidopsis lyrata subsp. lyrata] gi|297312893|gb|EFH43316.1| hypothetical protein ARALYDRAFT_491070 [Arabidopsis lyrata subsp. lyrata]

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 139/227 (61%), Positives = 181/227 (79%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFA 122
           Y W  GIGG+G L+T YL+YLK+T SDAFCPIGG +CGDVLNSDYAVVFGVPLP IG   
Sbjct: 79  YNWYTGIGGIGMLDTAYLTYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVM 138

Query: 123 YGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 182
           YGLV  L   L   + P GI+++ GR  L G +T+MA+ASAYFLYILST  SG++C YCL
Sbjct: 139 YGLVTALSAELGEGNLPFGISKTNGRFALFGITTAMASASAYFLYILSTKLSGSSCLYCL 198

Query: 183 TSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLP 242
            SA LSFSLFF+S+K+  ++EIQ+V+G+Q+C+A +VVA+L+ SYS+ QP+ S   +  LP
Sbjct: 199 VSAFLSFSLFFLSVKDVKLQEIQQVVGLQICLAIIVVASLTASYSTAQPIPSRSGDIELP 258

Query: 243 FFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS 289
           +F TEI+++SSP+A++LAKHL++IGAKMYGAFWCSHCLEQK++  + 
Sbjct: 259 YFRTEISSTSSPYAIALAKHLNSIGAKMYGAFWCSHCLEQKEMFGRE 305

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2128028	376	LTO1 "Lumen Thiol Oxidoreducta	0.887	0.694	0.483	1.9e-67

TAIR|locus:2128028 LTO1 "Lumen Thiol Oxidoreductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 128/265 (48%), Positives = 166/265 (62%)

Query:    25 RLSVLPVKCLXXX----XXXXXXXXXXXXXXXXXXXXXXXXXYGWCAGIGGVGFLETTYL 80
             R   +P+KC                                 Y W  GIGG+G L+T YL
Sbjct:    38 RFPAIPIKCSSSEPENGEDSAPSLSSSSSSSTSEVSTSNSSTYNWYTGIGGIGMLDTAYL 97

Query:    81 SYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYXXXXXXXXXXXRKSFPI 140
             +YLK+T SDAFCPIGG +CGDVLNSDYAVVFGVPLP IG   Y             + P 
Sbjct:    98 TYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVMYGVVTALSAELGEGNLPF 157

Query:   141 GINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCXXXXXXXXXXXXXXXXXXX 200
             GI++S GR  L G +T+MA+ASAYFLYILST  SG++C YC                   
Sbjct:   158 GISKSNGRFALFGITTAMASASAYFLYILSTKLSGSSCLYCLVSAFLSFSLFFLSVKDVK 217

Query:   201 VEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLA 260
             ++EIQ+V+G+Q+C+A +VVA+L+ SYS+ QP+ S   +  LP+F TEI++SSSP+A++LA
Sbjct:   218 LQEIQQVVGLQICLAIIVVASLTASYSTAQPIPSRSGDIELPYFRTEISSSSSPYAIALA 277

Query:   261 KHLHAIGAKMYGAFWCSHCLEQKQV 285
             KHL++IGAKMYGAFWCSHCLEQK++
Sbjct:   278 KHLNSIGAKMYGAFWCSHCLEQKEM 302


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      294       222   0.00096  112 3  11 22  0.47    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  163 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.81u 0.09s 16.90t   Elapsed:  00:00:00
  Total cpu time:  16.81u 0.09s 16.90t   Elapsed:  00:00:00
  Start:  Fri May 10 08:20:02 2013   End:  Fri May 10 08:20:02 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003955 "NAD(P)H dehydrogenase (quinone) activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA;IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.1.4.1	LOW CONFIDENCE prediction!
3rd Layer	1.1.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00570020	hypothetical protein (329 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_V3745	SubName- Full=Putative uncharacterized protein; (331 aa)			•	•	•				0.458
	estExt_fgenesh4_kg.C_LG_VII0034	SubName- Full=Putative uncharacterized protein; (332 aa)			•	•	•				0.440
	eugene3.60030002	Predicted protein (361 aa)	•								0.438

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
cd12916	133	cd12916, VKOR_1, Vitamin K epoxide reductase famil	3e-35
smart00756	142	smart00756, VKc, Family of likely enzymes that inc	2e-24
pfam07884	138	pfam07884, VKOR, Vitamin K epoxide reductase famil	7e-22
COG4243	156	COG4243, COG4243, Predicted membrane protein [Func	3e-17
cd10546	126	cd10546, VKOR, Vitamin K epoxide reductase (VKOR)	3e-11
cd12922	133	cd12922, VKOR_5, Vitamin K epoxide reductase famil	2e-08
cd12920	134	cd12920, VKOR_3, Vitamin K epoxide reductase famil	4e-07
PRK14889	143	PRK14889, PRK14889, VKOR family protein; Provision	2e-06
cd12918	126	cd12918, VKOR_arc, Vitamin K epoxide reductase fam	9e-06
cd12917	140	cd12917, VKOR_euk, Vitamin K epoxide reductase fam	0.001

>gnl|CDD|240599 cd12916, VKOR_1, Vitamin K epoxide reductase family in bacteria and plants

 Score =  123 bits (311), Expect = 3e-35
 Identities = 57/137 (41%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 62  PYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMF 121
                AG+  +G LET YL+Y+KLT S A CP GG  C  VLNS YA + G+PL   G  
Sbjct: 1   SRRLIAGLALIGLLETAYLTYVKLTGSSAVCPGGG-GCDTVLNSPYATLLGIPLSLFGFL 59

Query: 122 AYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYC 181
           AY  + VL +L           E +  L+L G +T+    SAY  Y+L+    GA C YC
Sbjct: 60  AYLAILVLAVLPLLLKSE--KLERWTWLLLFGLATAGVVFSAYLTYLLAF-VIGAFCPYC 116

Query: 182 LTSALLSFSLFFISLKE 198
           LTSA+LS  LF +++  
Sbjct: 117 LTSAVLSTLLFLLTILG 133

This family includes vitamin K epoxide reductase (VKOR) present in bacteria and plant. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some plant and bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Length = 133

>gnl|CDD|214805 smart00756, VKc, Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase

 Score = 95.9 bits (239), Expect = 2e-24
 Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 11/142 (7%)

Query: 61  SPYGWCAGIGGVGFLETTYLSYLKLTNS-----DAFCPIGGA-SCGDVLNSDYAVVFGVP 114
                   +G +G L + YL+Y KLT        A C I    SCG VL+S YA +FG+P
Sbjct: 3   WTRWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIP 62

Query: 115 LPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFS 174
           L  +G+ AY +V  L +L             +   +L   S + A  S Y +Y+L     
Sbjct: 63  LSLLGIAAYLVVLALAVLG----LLGVTLPRWTWRLLFLGSLAGAVFSVYLIYLLVFVI- 117

Query: 175 GATCSYCLTSALLSFSLFFISL 196
            A C YC+ SA++S SLF +  
Sbjct: 118 KALCLYCILSAVVSISLFILVT 139

Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases. Length = 142

>gnl|CDD|149126 pfam07884, VKOR, Vitamin K epoxide reductase family

 Score = 88.5 bits (220), Expect = 7e-22
 Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 10/140 (7%)

Query: 65  WCAGIGGVGFLETTYLSYLKLTNS----DAFCPIGGA-SCGDVLNSDYAVVFGVPLPFIG 119
               +G +G L + YL+  K         A C I    SC  VLNS +A +FG+P   +G
Sbjct: 4   IILILGLIGLLASLYLTLEKYGLLEDPYRASCDINPVVSCSKVLNSPWATIFGIPNSLLG 63

Query: 120 MFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCS 179
           + AY +V +LG+L         ++      + LG S      S Y +YI      GA C 
Sbjct: 64  ILAYLVVLLLGVLGLAGVT---LSRWTWLGLFLG-SLVGVVFSVYLIYISVFVI-GALCL 118

Query: 180 YCLTSALLSFSLFFISLKEF 199
           YC+ SA +S  LF +S    
Sbjct: 119 YCILSAAVSIVLFILSTIGV 138

Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases. Length = 138

>gnl|CDD|226694 COG4243, COG4243, Predicted membrane protein [Function unknown]

 Score = 76.7 bits (189), Expect = 3e-17
 Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 9/133 (6%)

Query: 67  AGIGGVGFLETTYLSYLKLTNSDAFCPI---GGASCGDVLNSDYAVVFGVPLPFIGMFAY 123
             IGG+  L         L      C     G  SC  VL+S YA + G+PL  +G+  +
Sbjct: 19  GVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYF 78

Query: 124 GLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLT 183
             V +  LL                 +L+G S   +A   Y +Y L     GA C YC  
Sbjct: 79  TAVLIAALLGVAGVLE----RWTWIGLLVG-SLVGSAFVPYLIY-LELFVIGALCLYCTV 132

Query: 184 SALLSFSLFFISL 196
           + L    LF ++ 
Sbjct: 133 AHLSILLLFVLAT 145

Length = 156

>gnl|CDD|240598 cd10546, VKOR, Vitamin K epoxide reductase (VKOR) family

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 69  IGGVGFLETTYLSYLKLTNSD-AFCPIGGA-SCGDVLNSDYAVVFGVPLPFIGMFAYGLV 126
           +  +G L + YL+Y +LT    A C  G + SC  VL S ++ +FGVPL  +G   Y +V
Sbjct: 6   LAAIGLLVSLYLTYYELTEGAVAGCDAGPSSSCDLVLTSRWSRIFGVPLSLLGALYYLVV 65

Query: 127 AVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSAL 186
             L L                   L  ++ +   A+A+ +Y+      GA C YCL +  
Sbjct: 66  LGLLLS-------PPAGARLRWTALAAATFAGLGAAAWLIYLQLF-VLGAFCPYCLVAHA 117

Query: 187 LSFSLFF 193
              +L  
Sbjct: 118 AGLALLA 124

VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. This family includes enzymes that are present in vertebrates, Drosophila, plants, bacteria, and archaea. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some plant and bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Warfarin, a widely used oral anticoagulant used in medicine as well as rodenticides, inhibits the activity of VKOR, resulting in decreased levels of reduced vitamin K, which is required for the function of several clotting factors. However, anticoagulation effect of warfarin is significantly associated with polymorphism of certain genes, including VKORC1. Interestingly, in rodents, an adaptive trait appears to have evolved convergently by selection on new or standing genetic polymorphisms in VKORC1 as well as by adaptive introgressive hybridization between species, likely brought about by human-mediated dispersal. Length = 126

>gnl|CDD|240605 cd12922, VKOR_5, Vitamin K epoxide reductase family in bacteria

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 98  SCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLG-LLLARKSFPIGINESYGRLILLGSST 156
           SCG V+ S  A +FG P P IG+ A+ +V  +G  LLA    P      +   +  G   
Sbjct: 41  SCGSVMQSWQASLFGFPNPLIGLAAFAVVITVGVALLAGARLP----RWFWVGLQAG--L 94

Query: 157 SMAAASAYFLYILSTNFSGATCSYCL 182
           +      ++L   S    GA C YC+
Sbjct: 95  AAGLVFVHWLIYQSLFVIGALCPYCM 120

This family includes vitamin K epoxide reductase (VKOR) mostly present in actinobacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Length = 133

>gnl|CDD|240603 cd12920, VKOR_3, Vitamin K epoxide reductase family in bacteria

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 11/134 (8%)

Query: 69  IGGVGFLETTYLSY-----LKLTNSDAFCPIGGA-SCGDVLNSDYAVVFGVPLPFIGMFA 122
           +  +G   +  L+Y     L      +FC I    +C  V  S Y+ + GVP+   G+ A
Sbjct: 6   LALIGLAFSGLLTYHHYGILTDGVGSSFCAINEVVNCDKVAQSPYSAIGGVPIALWGLLA 65

Query: 123 YGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 182
           YG +A L LL                L+LL        A      I S    GA C  C 
Sbjct: 66  YGFLAALFLLALISREDSERAAGLLFLVLL----VGLVADLVLGLI-SVTAIGALCILCA 120

Query: 183 TSALLSFSLFFISL 196
            + ++S +L F + 
Sbjct: 121 GTYIVSAALLFGAW 134

This family includes vitamin K epoxide reductase (VKOR) present in proteobacteria and spirochetes. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Length = 134

>gnl|CDD|184883 PRK14889, PRK14889, VKOR family protein; Provisional

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 39/143 (27%), Positives = 54/143 (37%), Gaps = 17/143 (11%)

Query: 59  GFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGG-ASCGDVLNSDYAVVFGVPLPF 117
            FS  G  A I         YL +  L     FC I    +C  VL+S YA   G+PL +
Sbjct: 14  AFSLVGLIASIAS-------YLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDY 66

Query: 118 IGMFAYGLVAVLGLLLAR-KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGA 176
           +G   +     L LL        +G   S   +I L       A   Y +Y L     GA
Sbjct: 67  LGAAWFSANIALALLGVGTLKRILGRVISLWSIIGL-------AIVPYLVY-LEVFVLGA 118

Query: 177 TCSYCLTSALLSFSLFFISLKEF 199
            C YC  + +   + F + L + 
Sbjct: 119 ICIYCTIAHVSILAAFILILIKL 141

Length = 143

>gnl|CDD|240601 cd12918, VKOR_arc, Vitamin K epoxide reductase family in archaea and some bacteria

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%)

Query: 68  GIGGVGFLETTYLSYLKLTNSD-AFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGL 125
            +  VG L + YL+Y          C I G  +C  VL+S Y+ + GVPL  +G+  + +
Sbjct: 5   ALSLVGLLASAYLTYEHYLKRPPLACTISGVINCEKVLSSPYSRILGVPLAVLGLAWFAV 64

Query: 126 VAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSA 185
           + VL LL A +   +     Y  ++  G +            I      GA C YC  + 
Sbjct: 65  LLVLSLLAALRVRLLLGALLYWSIL--GIAFVPYLVYLELFLI------GAICLYCTVAH 116

Query: 186 LLSFSLFFIS 195
           ++  +LF I 
Sbjct: 117 VIILALFIII 126

This family includes vitamin K epoxide reductase (VKOR) mostly present in archaea and some bacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Length = 126

>gnl|CDD|240600 cd12917, VKOR_euk, Vitamin K epoxide reductase family in eukaryotes, excluding plants

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 25/120 (20%)

Query: 90  AFCPIGGA-SCGDVLNSDYAVVFG-------------VPLPFIGMFAYGLVAVLGLLLAR 135
           A C I  + SC  V +S Y   FG              P    G+  Y L  +LGL    
Sbjct: 32  ALCDISESISCSKVFSSRYGRGFGLLGLILGKDSILNQPNSVFGIIFYILQLLLGL---- 87

Query: 136 KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFIS 195
                  N +   L+LL  S      S Y  YIL        C  C+++ +++F L  ++
Sbjct: 88  ------TNSAVAALLLLTLSILSVVGSLYLAYILYFVLK-DFCIVCVSTYVVNFLLLILN 140

This family includes vitamin K epoxide reductase (VKOR) present in bacteria and plant. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. Warfarin, a widely used oral anticoagulant used in medicine as well as rodenticides, inhibits the activity of VKOR, resulting in decreased levels of reduced vitamin K, which is required for the function of several clotting factors. However, anticoagulation effect of warfarin is significantly associated with polymorphism of certain genes, including VKORC1. Interestingly, in rodents, an adaptive trait appears to have evolved convergently by selection on new or standing genetic polymorphisms in VKORC1 as well as by adaptive introgressive hybridization between species, likely brought about by human-mediated dispersal. Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
smart00756	142	VKc Family of likely enzymes that includes the cat	99.96
PRK14889	143	VKOR family protein; Provisional	99.94
PF07884	137	VKOR: Vitamin K epoxide reductase family; InterPro	99.92
COG4243	156	Predicted membrane protein [Function unknown]	99.92
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	95.94
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	95.21
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	94.75
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	94.72
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	94.5
PHA03050	108	glutaredoxin; Provisional	94.48
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	94.08
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	93.97
PHA02125	75	thioredoxin-like protein	93.91
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	93.69
cd02947	93	TRX_family TRX family; composed of two groups: Gro	93.66
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	93.5
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	93.43
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	93.27
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	93.19
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	93.13
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	93.1
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	93.03
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	92.88
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	92.81
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	92.68
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	92.48
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	92.17
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	92.12
PRK00611	135	putative disulfide oxidoreductase; Provisional	92.01
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	91.76
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	91.67
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	91.51
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	91.28
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	91.16
PRK11200	85	grxA glutaredoxin 1; Provisional	91.08
PRK10638	83	glutaredoxin 3; Provisional	90.71
PRK03113	139	putative disulfide oxidoreductase; Provisional	90.64
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	90.57
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	90.43
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	90.34
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	89.89
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	89.53
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	89.52
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	89.48
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	89.24
PTZ00051	98	thioredoxin; Provisional	89.24
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	89.17
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	89.1
PRK10329	81	glutaredoxin-like protein; Provisional	89.06
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	89.01
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	88.71
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	88.66
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	88.42
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	87.66
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	87.0
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	86.89
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	86.69
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	86.51
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	86.36
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	86.24
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	86.1
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	85.35
PHA02278	103	thioredoxin-like protein	85.08
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	85.05
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	84.87
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	84.28
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	83.5
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	83.35
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	83.04
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	82.54
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	82.5
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	82.44
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	81.81
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	81.72
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	81.52
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	81.43
PRK09381	109	trxA thioredoxin; Provisional	80.14

>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase

Probab=99.96  E-value=4.6e-29  Score=212.39  Aligned_cols=130  Identities=37%  Similarity=0.542  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHhcC-----CCCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-cc
Q 022610           63 YGWCAGIGGVGFLETTYLSYLKLTN-----SDAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-AR  135 (294)
Q Consensus        63 ~~w~l~La~iGll~S~YLt~~kl~~-----~~~~C~i~~-~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~~-~~  135 (294)
                      ..++++++.+|+++|.||+++|++.     +++.||+|+ .||++|++||||++||+||+++|+++|++++.+++.. .+
T Consensus         5 ~~~~~~l~~iGl~~S~yl~~~~~~~~~~~~~~~~C~~~~~~sC~~Vl~S~~a~~~GiP~s~lG~~~y~~~~~l~~~~~~~   84 (142)
T smart00756        5 RWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIPLSLLGIAAYLVVLALAVLGLLG   84 (142)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcCCCCCCCCHHHHhcChhHHHcCCchHHHHHHHHHHHHHHHHHHHcc
Confidence            3344778889999999999999753     348999998 8999999999999999999999999999999998873 44


Q ss_pred             ccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhc
Q 022610          136 KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE  198 (294)
Q Consensus       136 ~~l~~~l~~~~~rw~ll~ls~~mav~s~yLlyil~~~vI~alC~yC~~S~~isi~Lf~ltl~~  198 (294)
                      .+.++    +.| +.++.+++.+.+++.|++|++.++ ||++|+||+++|++++++|+++..+
T Consensus        85 ~~~~~----~~~-~~l~~~~~~~~~~s~yl~y~~~~v-i~~~C~~C~~~~~~~~~lf~~~~~~  141 (142)
T smart00756       85 VTLPR----WTW-RLLFLGSLAGAVFSVYLIYLLVFV-IKALCLYCILSAVVSISLFILVTIG  141 (142)
T ss_pred             ccchH----HHH-HHHHHHHHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHHHhc
Confidence            45442    222 355666788889999999999886 8999999999999999999988765

Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.

>PRK14889 VKOR family protein; Provisional

Probab=99.94  E-value=6.3e-27  Score=200.21  Aligned_cols=129  Identities=24%  Similarity=0.395  Sum_probs=102.5

Q ss_pred             hHHH-HHHHHHHHHHHHHHHHhH--hcCCCCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHhccccC
Q 022610           63 YGWC-AGIGGVGFLETTYLSYLK--LTNSDAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSF  138 (294)
Q Consensus        63 ~~w~-l~La~iGll~S~YLt~~k--l~~~~~~C~i~~-~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~~~~~~l  138 (294)
                      .++. ++++.+|+++|.|++++|  .+++++.||+|+ +||++|++||||++||+||+++|+++|.+++.+++..... .
T Consensus         8 ~~~ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~fGiP~s~lGl~~f~~~l~l~~~~~~~-~   86 (143)
T PRK14889          8 ILYLLLAFSLVGLIASIASYLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDYLGAAWFSANIALALLGVGT-L   86 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCccHHHcCCchHHHHHHHHHHHHHHHHHHHcc-h
Confidence            4444 677789999999999877  457889999998 8999999999999999999999999999999999874322 2


Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhc
Q 022610          139 PIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE  198 (294)
Q Consensus       139 ~~~l~~~~~rw~ll~ls~~mav~s~yLlyil~~~vI~alC~yC~~S~~isi~Lf~ltl~~  198 (294)
                      +++..+.  .|.+   .....+++.|++|++.++ ||++|+||+++|++++++|++.+..
T Consensus        87 ~~~~~~~--~~~~---~~~g~~~~~yL~y~~~fv-i~a~C~~C~~~~~~~~~~~~~~~~~  140 (143)
T PRK14889         87 KRILGRV--ISLW---SIIGLAIVPYLVYLEVFV-LGAICIYCTIAHVSILAAFILILIK  140 (143)
T ss_pred             hHHHHHH--HHHH---HHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHHHHH
Confidence            2111111  1112   234467899999999886 8999999999999999999887654

>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes

Probab=99.92  E-value=4.5e-25  Score=185.41  Aligned_cols=128  Identities=34%  Similarity=0.585  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhcCCC----CCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-ccccC
Q 022610           65 WCAGIGGVGFLETTYLSYLKLTNSD----AFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-ARKSF  138 (294)
Q Consensus        65 w~l~La~iGll~S~YLt~~kl~~~~----~~C~i~~-~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~~-~~~~l  138 (294)
                      +..+++++|+++|.||++++++..+    ..||+++ .||++|++||||++||+||+++|+++|..++.+++.. .+++.
T Consensus         4 ~~~~l~liGl~~s~~l~~~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~~Gip~a~~G~~~f~~~l~~~~~~~~~~~~   83 (137)
T PF07884_consen    4 LLLALSLIGLLVSIYLLYVEMGLSRPGYSPFCDIGPRISCDAVLNSPYAKIFGIPLALLGLAFFAFLLLLALLGLARRRL   83 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------S-----------SGGGSSSSEETTEEHHHHHHHHHHHHHHHHH-----TT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCccccCCCCcccCCCHHHHhhccchhhccCCchHHHHHHHHHHHHHHHHHhhccch
Confidence            3477888999999999999986544    8999988 9999999999999999999999999999999988863 33333


Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhc
Q 022610          139 PIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE  198 (294)
Q Consensus       139 ~~~l~~~~~rw~ll~ls~~mav~s~yLlyil~~~vI~alC~yC~~S~~isi~Lf~ltl~~  198 (294)
                      ++    ..|. .++..++.+.+++.|+.|++.++ +|++|+||+++|++++.++++++.+
T Consensus        84 ~~----~~~~-~l~~~~~~~~~~~~~l~~~~~~~-i~~~C~~Cl~~~~i~~~l~~l~~~~  137 (137)
T PF07884_consen   84 SR----WLWL-LLFALSFIGLVFSLYLIYIQIFV-IKAWCPYCLVSYAINLALFILSLIR  137 (137)
T ss_dssp             ST----THHH-HHHHHHHHHHHHHHHHHHHHHTT-S----HHHHHHHHHHHHHHHHHHS-
T ss_pred             hH----HHHH-HHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            32    2222 44555667778899999999876 8999999999999999999988754

VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.

>COG4243 Predicted membrane protein [Function unknown]

Probab=99.92  E-value=9.6e-25  Score=188.73  Aligned_cols=137  Identities=28%  Similarity=0.378  Sum_probs=108.2

Q ss_pred             CCchhHHH-HHHHHHHHHHHHHHHHhH---hcCCC--CCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHH
Q 022610           59 GFSPYGWC-AGIGGVGFLETTYLSYLK---LTNSD--AFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGL  131 (294)
Q Consensus        59 ~~~~~~w~-l~La~iGll~S~YLt~~k---l~~~~--~~C~i~~-~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal  131 (294)
                      .|++++|. ..++.+|.+.+.-+++++   ++++.  ..|+.|+ .||++|++||||++||+||+++|+++|+++.++++
T Consensus         7 ~p~~~~~~~~i~G~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~sVl~Sp~A~~lGIPl~llG~a~Ft~~~i~al   86 (156)
T COG4243           7 APWILGWKVLILGVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYFTAVLIAAL   86 (156)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeccccccccccHHHHHcCcchhccCCchHHHHHHHHHHHHHHHH
Confidence            57889998 445556555555555555   55544  4567778 89999999999999999999999999999999998


Q ss_pred             HhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhccch
Q 022610          132 LLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSV  201 (294)
Q Consensus       132 ~~~~~~l~~~l~~~~~rw~ll~ls~~mav~s~yLlyil~~~vI~alC~yC~~S~~isi~Lf~ltl~~~~~  201 (294)
                      ..-...+    ++++|+ .+...++.+.+|+.||+|++.+. +|++|+||+++|+.++.+|++...+++|
T Consensus        87 l~~~~~l----~~~~~~-~l~v~~~~g~~f~~yLiY~e~~~-~~alC~YCtv~h~~~l~~~vl~~~~~~~  150 (156)
T COG4243          87 LGVAGVL----ERWTWI-GLLVGSLVGSAFVPYLIYLELFV-IGALCLYCTVAHLSILLLFVLATAGRRW  150 (156)
T ss_pred             HHHHHhH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8533323    344444 44556678889999999988765 8999999999999999999999888877

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=95.94  E-value=0.0052  Score=43.91  Aligned_cols=22  Identities=32%  Similarity=0.782  Sum_probs=19.4

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|++.|||+|+++++.|.+.
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~   23 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK   23 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC
Confidence            4799999999999999998753

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=95.21  E-value=0.014  Score=41.62  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=19.0

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|++.|||+|++.++++.+
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~   22 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE   22 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH
Confidence            579999999999999999865

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=94.75  E-value=0.022  Score=41.58  Aligned_cols=22  Identities=27%  Similarity=0.786  Sum_probs=19.5

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|++.|||+|++-|+++.+-
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~   23 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL   23 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc
Confidence            5799999999999999998763

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=94.72  E-value=0.031  Score=42.46  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=28.4

Q ss_pred             hhHHHHHHHhccccceeeccccChhhHHHHHhHH
Q 022610          254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLH  287 (294)
Q Consensus       254 ~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg  287 (294)
                      .++.+.|+.=++.=.+++++.||++|+..++-+-
T Consensus         7 ~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~   40 (82)
T PF13899_consen    7 EEALAEAKKEGKPVLVDFGADWCPPCKKLEREVF   40 (82)
T ss_dssp             HHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHc
Confidence            3567777777888889999999999999988763

...

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=94.50  E-value=0.029  Score=44.93  Aligned_cols=29  Identities=14%  Similarity=0.278  Sum_probs=24.4

Q ss_pred             HHhccccceeeccccChhhHHHHHhHHhh
Q 022610          261 KHLHAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       261 ~~L~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.+++.-.++|+..|||+|++-|++|-+.
T Consensus         3 ~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~   31 (99)
T TIGR02189         3 RMVSEKAVVIFSRSSCCMCHVVKRLLLTL   31 (99)
T ss_pred             hhhccCCEEEEECCCCHHHHHHHHHHHHc
Confidence            34566778999999999999999999653

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PHA03050 glutaredoxin; Provisional

Probab=94.48  E-value=0.043  Score=44.94  Aligned_cols=32  Identities=16%  Similarity=0.367  Sum_probs=27.2

Q ss_pred             HHHHHhccccceeeccccChhhHHHHHhHHhh
Q 022610          258 SLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       258 ~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .+-+.+++..+++|+..|||+|.+-|++|-+.
T Consensus         5 ~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~   36 (108)
T PHA03050          5 FVQQRLANNKVTIFVKFTCPFCRNALDILNKF   36 (108)
T ss_pred             HHHHHhccCCEEEEECCCChHHHHHHHHHHHc
Confidence            45566778889999999999999999999653

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=94.08  E-value=0.056  Score=44.37  Aligned_cols=36  Identities=19%  Similarity=0.238  Sum_probs=29.0

Q ss_pred             hhHHHHHHHhccccceeeccccChhhHHHHHhHHhh
Q 022610          254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       254 ~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++++.|+.=++.=.+.|.|.||++|++.+..|-+.
T Consensus         9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~   44 (117)
T cd02959           9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAES   44 (117)
T ss_pred             HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhh
Confidence            456677777677778999999999999998887763

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=93.97  E-value=1.6  Score=45.38  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=17.7

Q ss_pred             cccceeeccccChhhHHHHHh-HH
Q 022610          265 AIGAKMYGAFWCSHCLEQKQV-LH  287 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~l-fg  287 (294)
                      +.=.+++.|.||++|++.++. |.
T Consensus       475 K~VlVdF~A~WC~~Ck~~e~~~~~  498 (571)
T PRK00293        475 KPVMLDLYADWCVACKEFEKYTFS  498 (571)
T ss_pred             CcEEEEEECCcCHhHHHHHHHhcC
Confidence            444678999999999988664 53

>PHA02125 thioredoxin-like protein

Probab=93.91  E-value=0.043  Score=41.25  Aligned_cols=21  Identities=33%  Similarity=0.833  Sum_probs=18.5

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|++.||++|.+.|+.|.+
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~   22 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLAN   22 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHH
Confidence            368999999999999999854

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=93.69  E-value=0.05  Score=39.27  Aligned_cols=21  Identities=14%  Similarity=0.344  Sum_probs=18.8

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|.+.|||+|.+.|+++-+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~   23 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANR   23 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHH
Confidence            578999999999999999875

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=93.66  E-value=0.056  Score=39.26  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=21.6

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.-..+|++.||++|+++++.+.+-
T Consensus        11 ~~~ll~~~~~~C~~C~~~~~~~~~~   35 (93)
T cd02947          11 KPVVVDFWAPWCGPCKAIAPVLEEL   35 (93)
T ss_pred             CcEEEEEECCCChhHHHhhHHHHHH
Confidence            4557899999999999999999763

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=93.50  E-value=0.059  Score=38.43  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.8

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|+..|||+|.+-|++|-+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~   21 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE   21 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH
T ss_pred             cEEEEcCCCcCHHHHHHHHHH
Confidence            368999999999999999954

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=93.43  E-value=0.083  Score=42.10  Aligned_cols=26  Identities=15%  Similarity=0.308  Sum_probs=21.4

Q ss_pred             cccceeeccccChhhHHHHHhHHhhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      +.=..+|.+.|||||++.+..|.+-+
T Consensus        22 k~vlv~f~a~wC~~C~~~~~~~~~la   47 (109)
T cd02993          22 QSTLVVLYAPWCPFCQAMEASYEELA   47 (109)
T ss_pred             CCEEEEEECCCCHHHHHHhHHHHHHH
Confidence            35568999999999999999887643

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=93.27  E-value=0.084  Score=42.75  Aligned_cols=20  Identities=15%  Similarity=0.188  Sum_probs=17.0

Q ss_pred             cceeeccccChhhHHHHHhH
Q 022610          267 GAKMYGAFWCSHCLEQKQVL  286 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lf  286 (294)
                      =.++|++.|||+|++.++.+
T Consensus        17 vlv~f~a~wC~~C~~~~~~~   36 (125)
T cd02951          17 LLLLFSQPGCPYCDKLKRDY   36 (125)
T ss_pred             EEEEEeCCCCHHHHHHHHHh
Confidence            46889999999999988655

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=93.19  E-value=0.062  Score=41.10  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.0

Q ss_pred             ceeeccccChhhHHHHHhHHhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ..+|.+.||++|.+++..|.+-+
T Consensus        22 ~v~f~a~~C~~C~~~~~~~~~~~   44 (105)
T cd02998          22 LVEFYAPWCGHCKNLAPEYEKLA   44 (105)
T ss_pred             EEEEECCCCHHHHhhChHHHHHH
Confidence            67899999999999999987643

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=93.13  E-value=0.062  Score=44.59  Aligned_cols=33  Identities=15%  Similarity=0.202  Sum_probs=24.6

Q ss_pred             HHHHHhc--cccceeeccccChhhHHHHHhHHhhh
Q 022610          258 SLAKHLH--AIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       258 ~la~~L~--~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++-+.++  +...++||+.|||+|++-+-.|.+-+
T Consensus        15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~   49 (122)
T TIGR01295        15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVV   49 (122)
T ss_pred             HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHH
Confidence            3444444  35689999999999999888776643

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=93.10  E-value=0.063  Score=39.70  Aligned_cols=21  Identities=19%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .+.|.+.|||+|.+.++.+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~   23 (82)
T TIGR00411         3 IELFTSPTCPYCPAAKRVVEE   23 (82)
T ss_pred             EEEEECCCCcchHHHHHHHHH
Confidence            568999999999999999876

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=93.03  E-value=0.078  Score=37.36  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|+..|||+|++-|++|.+.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~   23 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESL   23 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc
Confidence            4799999999999999998764

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=92.88  E-value=0.084  Score=40.05  Aligned_cols=24  Identities=17%  Similarity=0.365  Sum_probs=20.9

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +...++|+..|||+|++-|+++.+
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak~~L~~   30 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAKATLKE   30 (79)
T ss_pred             CCCEEEEECCCCHhHHHHHHHHHH
Confidence            445689999999999999999965

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=92.81  E-value=0.11  Score=42.31  Aligned_cols=32  Identities=19%  Similarity=0.161  Sum_probs=23.8

Q ss_pred             HHHHhcccc-c-eeeccccChhhHHHHHhHHhhh
Q 022610          259 LAKHLHAIG-A-KMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       259 la~~L~~~g-a-~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++++|++.- . +++++.|||+|.+.|+++-+-+
T Consensus        15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la   48 (113)
T cd02975          15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELS   48 (113)
T ss_pred             HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHH
Confidence            666665432 3 4559999999999999987644

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=92.68  E-value=0.09  Score=39.32  Aligned_cols=22  Identities=23%  Similarity=0.581  Sum_probs=19.5

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|+..|||+|++.|++|-+.
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~   22 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK   22 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc
Confidence            3699999999999999998764

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=92.48  E-value=0.094  Score=38.94  Aligned_cols=22  Identities=18%  Similarity=0.532  Sum_probs=19.8

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|++.|||+|.+-|+++.+.
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~   23 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKEL   23 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHc
Confidence            4799999999999999998764

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=92.17  E-value=0.18  Score=39.77  Aligned_cols=32  Identities=16%  Similarity=0.298  Sum_probs=24.0

Q ss_pred             HHHHHhcccc--ceeeccccChhhHHHHHhHHhh
Q 022610          258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       258 ~la~~L~~~g--a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++.+++++.+  ..+|.|.||++|...+..|.+-
T Consensus         9 ~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~   42 (102)
T cd02948           9 EWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKI   42 (102)
T ss_pred             HHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHH
Confidence            4445554444  4699999999999999998763

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=92.12  E-value=0.11  Score=38.24  Aligned_cols=22  Identities=18%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +++|+..|||+|++-|+++.+.
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~   24 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN   24 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc
Confidence            5799999999999999999753

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PRK00611 putative disulfide oxidoreductase; Provisional

Probab=92.01  E-value=1.1  Score=38.62  Aligned_cols=60  Identities=22%  Similarity=0.280  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHhHh-cCC-CCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 022610           67 AGIGGVGFLETTYLSYLKL-TNS-DAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL  132 (294)
Q Consensus        67 l~La~iGll~S~YLt~~kl-~~~-~~~C~i~~~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~  132 (294)
                      +.++..|+..+.|-.+.+. +.. .+.|.  +.+|.++   .| +++|++.|.+-+++|..++++.+.
T Consensus        69 l~~a~~G~~iA~~hv~lQ~~p~~~~~~Cg--~g~Ca~~---~~-~fl~lsiP~wSl~aF~~i~~l~~~  130 (135)
T PRK00611         69 LPLALVGFGIAIYQVCLQEIPGMTLDICG--RVSCSTK---LF-LFGFITMPMASAAAFCAIACLLVL  130 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCC--CCCCccc---ch-hcccccHHHHHHHHHHHHHHHHHH
Confidence            4557799999999887663 332 35775  3589998   34 789999999999999988776654

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=91.76  E-value=0.13  Score=33.50  Aligned_cols=21  Identities=29%  Similarity=0.695  Sum_probs=18.4

Q ss_pred             eeeccccChhhHHHHHhHHhh
Q 022610          269 KMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       269 ~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .+|.+.|||+|+++++.+-+.
T Consensus         2 ~~~~~~~c~~c~~~~~~~~~~   22 (69)
T cd01659           2 VLFYAPWCPFCQALRPVLAEL   22 (69)
T ss_pred             EEEECCCChhHHhhhhHHHHH
Confidence            578899999999999998853

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=91.67  E-value=0.14  Score=39.97  Aligned_cols=28  Identities=29%  Similarity=0.476  Sum_probs=20.0

Q ss_pred             HHHHhcccc--ceeeccccChhhHHHHHhH
Q 022610          259 LAKHLHAIG--AKMYGAFWCSHCLEQKQVL  286 (294)
Q Consensus       259 la~~L~~~g--a~~yga~wCp~C~~Qk~lf  286 (294)
                      +.+.+++-.  .++|++.||++|.+.+..+
T Consensus         4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~   33 (104)
T cd02953           4 LAQALAQGKPVFVDFTADWCVTCKVNEKVV   33 (104)
T ss_pred             HHHHHHcCCeEEEEEEcchhHHHHHHHHHh
Confidence            344444433  5789999999999988654

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=91.51  E-value=0.15  Score=38.65  Aligned_cols=26  Identities=23%  Similarity=0.413  Sum_probs=21.8

Q ss_pred             cccceeeccccChhhHHHHHhHHhhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      +.-.++|.+.||++|++++..|-+-+
T Consensus        18 ~~vvv~f~~~~C~~C~~~~~~~~~~~   43 (103)
T PF00085_consen   18 KPVVVYFYAPWCPPCKAFKPILEKLA   43 (103)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCccccccceecccc
Confidence            45568999999999999999987644

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=91.28  E-value=0.12  Score=39.53  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=19.6

Q ss_pred             cceeeccccChhhHHHHHhHHhhh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      =..+|.|.||++|++++..|.+-+
T Consensus        19 ~lv~f~a~wC~~C~~~~p~~~~~~   42 (102)
T cd03005          19 HFVKFFAPWCGHCKRLAPTWEQLA   42 (102)
T ss_pred             EEEEEECCCCHHHHHhCHHHHHHH
Confidence            346888999999999998887643

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=91.16  E-value=0.17  Score=37.13  Aligned_cols=22  Identities=23%  Similarity=0.557  Sum_probs=19.5

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|+..|||+|++.|+++-+.
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~   23 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK   23 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC
Confidence            4799999999999999999653

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=91.08  E-value=0.15  Score=38.97  Aligned_cols=21  Identities=19%  Similarity=0.553  Sum_probs=19.6

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|+..|||+|.+-|+++-+
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~   23 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEK   23 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHh
Confidence            579999999999999999987

>PRK10638 glutaredoxin 3; Provisional

Probab=90.71  E-value=0.19  Score=38.27  Aligned_cols=23  Identities=22%  Similarity=0.531  Sum_probs=20.2

Q ss_pred             cceeeccccChhhHHHHHhHHhh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ..++|+..|||+|++-|+++-+.
T Consensus         3 ~v~ly~~~~Cp~C~~a~~~L~~~   25 (83)
T PRK10638          3 NVEIYTKATCPFCHRAKALLNSK   25 (83)
T ss_pred             cEEEEECCCChhHHHHHHHHHHc
Confidence            46799999999999999998753

>PRK03113 putative disulfide oxidoreductase; Provisional

Probab=90.64  E-value=1.5  Score=37.90  Aligned_cols=64  Identities=19%  Similarity=0.324  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhH-hc---CCCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 022610           64 GWCAGIGGVGFLETTYLSYLK-LT---NSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL  132 (294)
Q Consensus        64 ~w~l~La~iGll~S~YLt~~k-l~---~~~~~C~i~~~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~  132 (294)
                      ++.+.++..|+.++.|-.+.+ ++   +..+.|.  +.+|.++.-.+   +.|++.+.+-+++|.+++++.+.
T Consensus        67 ~y~~l~a~~G~~iA~~h~~lq~~p~~~~~~~~Cg--~~~Ca~~~~~~---~g~lsiP~wSl~~F~~i~~l~~~  134 (139)
T PRK03113         67 SYSLPISSIGACISLYHYAIQKIPFFSAAAASCG--RVPCTGEYINW---FGFVTIPFLALIAFITIAVCSFI  134 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCC--CCChhhhhHHH---hccCcHHHHHHHHHHHHHHHHHH
Confidence            445667789999999887765 34   2235675  34898865543   45699999999999998877665

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=90.57  E-value=0.3  Score=38.94  Aligned_cols=32  Identities=13%  Similarity=0.198  Sum_probs=26.6

Q ss_pred             HHHHHHhccccceeecc-----ccChhhHHHHHhHHh
Q 022610          257 LSLAKHLHAIGAKMYGA-----FWCSHCLEQKQVLHQ  288 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga-----~wCp~C~~Qk~lfg~  288 (294)
                      ..+.+.+++..++.|.-     .|||+|++-|++|-+
T Consensus         3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~   39 (97)
T TIGR00365         3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKA   39 (97)
T ss_pred             HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHH
Confidence            35667788888999954     899999999999965

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=90.43  E-value=0.2  Score=38.95  Aligned_cols=32  Identities=13%  Similarity=0.182  Sum_probs=23.2

Q ss_pred             HHHHhcccc--ceeeccccChhhHHHHHhHHhhh
Q 022610          259 LAKHLHAIG--AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       259 la~~L~~~g--a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      +.+++++.+  .++|-+.||+||++.+..|-+-|
T Consensus        11 f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a   44 (101)
T cd03003          11 FDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFA   44 (101)
T ss_pred             HHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHH
Confidence            334444333  46788999999999999987654

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=90.34  E-value=0.24  Score=37.85  Aligned_cols=21  Identities=14%  Similarity=-0.024  Sum_probs=18.7

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..+|.+.||++|++.+..|.+
T Consensus        16 lv~f~a~wC~~C~~~~~~~~~   36 (96)
T cd02956          16 VVDFWAPRSPPSKELLPLLER   36 (96)
T ss_pred             EEEEECCCChHHHHHHHHHHH
Confidence            588999999999999998865

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=89.89  E-value=0.34  Score=38.12  Aligned_cols=33  Identities=12%  Similarity=0.285  Sum_probs=23.9

Q ss_pred             HHHHHhcccc--ceeeccccChhhHHHHHhHHhhh
Q 022610          258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       258 ~la~~L~~~g--a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      .+.+++++.+  .++|.|.||++|.+.+..|-+-|
T Consensus        10 ~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a   44 (108)
T cd02996          10 NIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAA   44 (108)
T ss_pred             hHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHH
Confidence            3445554433  46899999999999998887543

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=89.53  E-value=0.27  Score=36.37  Aligned_cols=21  Identities=19%  Similarity=0.581  Sum_probs=19.0

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .+.|+..|||+|.+-|+++.+
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~   23 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE   23 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH
Confidence            468999999999999999875

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=89.52  E-value=0.25  Score=37.89  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=18.2

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..++.+.||+||.+.+..|.+
T Consensus        22 lv~f~a~~C~~C~~~~~~~~~   42 (103)
T cd03001          22 LVEFYAPWCGHCKNLAPEWKK   42 (103)
T ss_pred             EEEEECCCCHHHHHHhHHHHH
Confidence            467789999999999998865

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=89.48  E-value=0.29  Score=36.23  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=19.0

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +++|+..+||+|++-|+++-+
T Consensus         1 v~ly~~~~Cp~C~~ak~~L~~   21 (72)
T TIGR02194         1 ITVYSKNNCVQCKMTKKALEE   21 (72)
T ss_pred             CEEEeCCCCHHHHHHHHHHHH
Confidence            479999999999999999865

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=89.24  E-value=0.37  Score=41.12  Aligned_cols=37  Identities=16%  Similarity=0.001  Sum_probs=29.7

Q ss_pred             CChhHHHHHHHhccccceeeccccChhhHHHHHh-HHh
Q 022610          252 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQV-LHQ  288 (294)
Q Consensus       252 s~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~l-fg~  288 (294)
                      +=+.+++.|+.=.+.=..++++.|||+|++-++- |.+
T Consensus        11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~   48 (130)
T cd02960          11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEH   48 (130)
T ss_pred             hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCC
Confidence            3456778888888887899999999999998875 444

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PTZ00051 thioredoxin; Provisional

Probab=89.24  E-value=0.43  Score=36.43  Aligned_cols=32  Identities=16%  Similarity=0.353  Sum_probs=23.4

Q ss_pred             HHHHHhcc--ccceeeccccChhhHHHHHhHHhh
Q 022610          258 SLAKHLHA--IGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       258 ~la~~L~~--~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++.+.+++  .-..+|.+.||++|++.+..|.+-
T Consensus        10 ~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l   43 (98)
T PTZ00051         10 EFESTLSQNELVIVDFYAEWCGPCKRIAPFYEEC   43 (98)
T ss_pred             HHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHH
Confidence            34444444  345689999999999999988763

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=89.17  E-value=0.3  Score=36.93  Aligned_cols=22  Identities=18%  Similarity=0.612  Sum_probs=17.9

Q ss_pred             ceeeccccChhhHHHHHhHHhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ..+|+ .|||+|..-++.|-+-+
T Consensus         3 i~~~a-~~C~~C~~~~~~~~~~~   24 (76)
T TIGR00412         3 IQIYG-TGCANCQMTEKNVKKAV   24 (76)
T ss_pred             EEEEC-CCCcCHHHHHHHHHHHH
Confidence            46887 99999999988877644

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=89.10  E-value=0.38  Score=37.14  Aligned_cols=30  Identities=17%  Similarity=0.236  Sum_probs=23.1

Q ss_pred             HHhccccceeeccccChhhHHHHHhHHhhh
Q 022610          261 KHLHAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       261 ~~L~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      +.++..-.++|-|.|||+|.+.+..|-+=+
T Consensus        13 ~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~   42 (101)
T cd02994          13 LVLEGEWMIEFYAPWCPACQQLQPEWEEFA   42 (101)
T ss_pred             HHhCCCEEEEEECCCCHHHHHHhHHHHHHH
Confidence            344455578999999999999998887533

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=89.06  E-value=0.3  Score=37.72  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|+..|||+|++-|+++.+.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~~   24 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMESR   24 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHHC
Confidence            5799999999999999999764

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=89.01  E-value=0.28  Score=38.87  Aligned_cols=23  Identities=17%  Similarity=0.378  Sum_probs=19.3

Q ss_pred             ceeeccccChhhHHHHHhHHhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      .++|-|.||+||++.+..|-+-+
T Consensus        22 lV~F~a~WC~~C~~~~p~l~~la   44 (100)
T cd02999          22 AVLFYASWCPFSASFRPHFNALS   44 (100)
T ss_pred             EEEEECCCCHHHHhHhHHHHHHH
Confidence            47899999999999998887643

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=88.71  E-value=0.46  Score=36.89  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=20.0

Q ss_pred             cceeeccccChhhHHHHHhHHhhh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      =.++|.|.||+||++.+..|.+-+
T Consensus        22 v~v~f~a~wC~~C~~~~p~~~~~~   45 (104)
T cd03004          22 WLVDFYAPWCGPCQALLPELRKAA   45 (104)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHH
Confidence            357899999999999998887644

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=88.66  E-value=0.32  Score=39.98  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=22.1

Q ss_pred             cccceeeccccChhhHHHHHhHHhhhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQSLT  291 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~a~  291 (294)
                      +.-.++|-|.||+||+.-+..|.+-|.
T Consensus        30 ~~vlV~FyA~WC~~Ck~l~p~~~~la~   56 (113)
T cd03006          30 EVSLVMYYAPWDAQSQAARQEFEQVAQ   56 (113)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHH
Confidence            345578889999999999999987553

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=88.42  E-value=0.36  Score=40.84  Aligned_cols=30  Identities=20%  Similarity=0.227  Sum_probs=22.8

Q ss_pred             HHHhccccceeeccccChhhHHHHHhHHhh
Q 022610          260 AKHLHAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       260 a~~L~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      |..-.+.=.++|.|.||++|...+..|.+-
T Consensus        16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l   45 (142)
T cd02950          16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKL   45 (142)
T ss_pred             HHhCCCEEEEEEECCcCHHHHHhHHHHHHH
Confidence            333344556789999999999999888763

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=87.66  E-value=0.41  Score=37.18  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=18.9

Q ss_pred             ceeeccccChhhHHHHHhHHhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      .++|-|.||+||++.+..|-+-+
T Consensus        22 lv~f~a~wC~~C~~~~~~~~~~a   44 (109)
T cd03002          22 LVEFYAPWCGHCKNLKPEYAKAA   44 (109)
T ss_pred             EEEEECCCCHHHHhhChHHHHHH
Confidence            57888999999999988876643

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=87.00  E-value=0.37  Score=37.78  Aligned_cols=24  Identities=29%  Similarity=0.573  Sum_probs=19.9

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.=..+|.+.|||+|.+.+..|.+
T Consensus        16 ~~vlv~f~a~wC~~C~~~~p~l~~   39 (104)
T cd03000          16 DIWLVDFYAPWCGHCKKLEPVWNE   39 (104)
T ss_pred             CeEEEEEECCCCHHHHhhChHHHH
Confidence            344578999999999999888765

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=86.89  E-value=0.71  Score=35.74  Aligned_cols=31  Identities=26%  Similarity=0.449  Sum_probs=22.8

Q ss_pred             HHHHHhcccc---ceeeccccChhhHHHHHhHHh
Q 022610          258 SLAKHLHAIG---AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       258 ~la~~L~~~g---a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +|.+.+.+.+   .++|.+.||+.|+++++.+-+
T Consensus         4 ~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~   37 (97)
T cd02949           4 ALRKLYHESDRLILVLYTSPTCGPCRTLKPILNK   37 (97)
T ss_pred             hHHHHHHhCCCeEEEEEECCCChhHHHHHHHHHH
Confidence            3444444433   478999999999999988854

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=86.69  E-value=0.57  Score=39.31  Aligned_cols=36  Identities=14%  Similarity=0.079  Sum_probs=28.1

Q ss_pred             ChhHHHHHHHhccccceeeccccChhhHHHH-HhHHh
Q 022610          253 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQK-QVLHQ  288 (294)
Q Consensus       253 ~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk-~lfg~  288 (294)
                      ++++.+.|+.=.+.=...+++.||+.|+.-+ +.|.+
T Consensus         4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~   40 (124)
T cd02955           4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFED   40 (124)
T ss_pred             CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCC
Confidence            3456777777777767889999999999885 57776

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=86.51  E-value=0.34  Score=36.44  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=23.6

Q ss_pred             HHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..+++--++.-..+|.+.|||+|.++...+-+
T Consensus        12 ~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~   43 (116)
T cd02966          12 VSLSDLKGKVVLVNFWASWCPPCRAEMPELEA   43 (116)
T ss_pred             eehHHcCCCEEEEEeecccChhHHHHhHHHHH
Confidence            44444335667789999999999988777665

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=86.36  E-value=0.49  Score=38.73  Aligned_cols=34  Identities=15%  Similarity=0.258  Sum_probs=25.0

Q ss_pred             hHHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          255 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       255 ~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..+.|++.-.+.=..++.+.|||+|.++...+.+
T Consensus         8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~   41 (132)
T cd02964           8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVE   41 (132)
T ss_pred             ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHH
Confidence            4455665555666688999999999998766653

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=86.24  E-value=0.77  Score=35.07  Aligned_cols=24  Identities=29%  Similarity=0.594  Sum_probs=19.4

Q ss_pred             ccceeeccccChhhHHHHHhHHhh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .=.+.|.+.|||+|.+.+..|.+-
T Consensus        19 ~~~v~f~a~wC~~C~~~~~~~~~~   42 (104)
T cd02997          19 HVLVMFYAPWCGHCKKMKPEFTKA   42 (104)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHH
Confidence            345799999999999998777653

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=86.10  E-value=0.59  Score=36.94  Aligned_cols=32  Identities=6%  Similarity=0.032  Sum_probs=23.8

Q ss_pred             HHHHHhcc----ccceeeccccChhhHHHHHhHHhh
Q 022610          258 SLAKHLHA----IGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       258 ~la~~L~~----~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++.+++++    .=.+.|.|.||++|...+..|-+-
T Consensus         5 ~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l   40 (103)
T cd02985           5 ELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKL   40 (103)
T ss_pred             HHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHH
Confidence            45555543    345789999999999999888753

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=85.35  E-value=0.97  Score=39.24  Aligned_cols=33  Identities=15%  Similarity=0.280  Sum_probs=24.6

Q ss_pred             HHHHHhcccc----ceeeccccChhhHHHHHhHHhhh
Q 022610          258 SLAKHLHAIG----AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       258 ~la~~L~~~g----a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++.+.+.+.+    .++|-|.|||+|++.+..|.+=+
T Consensus        37 ~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la   73 (152)
T cd02962          37 TLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELS   73 (152)
T ss_pred             HHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHH
Confidence            3556664332    67999999999999999887643

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PHA02278 thioredoxin-like protein

Probab=85.08  E-value=1.1  Score=36.11  Aligned_cols=33  Identities=18%  Similarity=0.190  Sum_probs=24.6

Q ss_pred             HHHHHHhcccc--ceeeccccChhhHHHHHhHHhh
Q 022610          257 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       257 ~~la~~L~~~g--a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++.+++++-+  .++|.|.||+.|...+..|-+-
T Consensus         5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l   39 (103)
T PHA02278          5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMF   39 (103)
T ss_pred             HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHH
Confidence            35555554333  4789999999999999988763

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=85.05  E-value=0.62  Score=37.37  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=19.6

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.=.++|-|.||++|++.+..|-+
T Consensus        25 ~~vlV~F~a~wC~~C~~~~p~~~~   48 (111)
T cd02963          25 KPYLIKITSDWCFSCIHIEPVWKE   48 (111)
T ss_pred             CeEEEEEECCccHhHHHhhHHHHH
Confidence            344578999999999999988764

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=84.87  E-value=0.65  Score=37.63  Aligned_cols=33  Identities=15%  Similarity=0.318  Sum_probs=25.3

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|++.-.+.-..++.+.|||+|+++...+.+
T Consensus        10 ~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~   42 (131)
T cd03009          10 KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVE   42 (131)
T ss_pred             CccHHHhCCcEEEEEEECCCChHHHHHhHHHHH
Confidence            456666666677889999999999988776653

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=84.28  E-value=0.75  Score=35.03  Aligned_cols=23  Identities=22%  Similarity=0.523  Sum_probs=19.4

Q ss_pred             ceeeccccChhhHHHHHhHHhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      .++|.+.||++|+..++.|.+-+
T Consensus        22 ~v~f~~~~C~~C~~~~~~~~~~~   44 (104)
T cd02995          22 LVEFYAPWCGHCKALAPIYEELA   44 (104)
T ss_pred             EEEEECCCCHHHHHHhhHHHHHH
Confidence            47899999999999988887643

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=83.50  E-value=0.89  Score=37.91  Aligned_cols=24  Identities=21%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             cceeeccccChhhHHHHHhHHhhh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      =.+.|+|.||+.|..-+..|.+=|
T Consensus        17 vVV~F~A~WCgpCk~m~P~le~la   40 (114)
T cd02954          17 VVIRFGRDWDPVCMQMDEVLAKIA   40 (114)
T ss_pred             EEEEEECCCChhHHHHHHHHHHHH
Confidence            357899999999999999997744

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=83.35  E-value=0.82  Score=37.05  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=23.3

Q ss_pred             HHHHHhcccc---ceeeccccChhhHHHHHhHHhh
Q 022610          258 SLAKHLHAIG---AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       258 ~la~~L~~~g---a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .+.++.++.+   ..+|-+.||++|+..+..|-+=
T Consensus        10 ~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~l   44 (114)
T cd02992          10 SFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKL   44 (114)
T ss_pred             hHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHH
Confidence            3445554443   4688899999999999888763

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=83.04  E-value=1.5  Score=32.41  Aligned_cols=33  Identities=15%  Similarity=0.302  Sum_probs=24.8

Q ss_pred             HHHHHhccc--cceeeccccChhhHHHHHhHHhhh
Q 022610          258 SLAKHLHAI--GAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       258 ~la~~L~~~--ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++.+.+++.  -..+|.+.||++|.+.+..|-+-+
T Consensus         7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~   41 (101)
T cd02961           7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLA   41 (101)
T ss_pred             HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHH
Confidence            444555554  567899999999999999987643

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=82.54  E-value=6  Score=34.56  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=18.4

Q ss_pred             ccccceeeccccChhhHHHHHhHHh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .+.=...|-|.|||+|.++...+.+
T Consensus        68 gk~vvv~FwatwC~~C~~e~p~l~~   92 (185)
T PRK15412         68 GKPVLLNVWATWCPTCRAEHQYLNQ   92 (185)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHH
Confidence            3444567779999999998766643

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=82.50  E-value=1.1  Score=36.95  Aligned_cols=30  Identities=17%  Similarity=0.358  Sum_probs=25.9

Q ss_pred             HHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          259 LAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       259 la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .=+-..+..+++|.-.|||.||.-|+||-+
T Consensus         7 v~~~i~~~~VVifSKs~C~~c~~~k~ll~~   36 (104)
T KOG1752|consen    7 VRKMISENPVVIFSKSSCPYCHRAKELLSD   36 (104)
T ss_pred             HHHHhhcCCEEEEECCcCchHHHHHHHHHh
Confidence            345567788999999999999999999976

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=82.44  E-value=0.65  Score=36.86  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=23.8

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..++++.-++.-...|.+.|||+|+.+...+.+
T Consensus        12 ~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~   44 (123)
T cd03011          12 QFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQ   44 (123)
T ss_pred             EeeHHHhCCCEEEEEEECCcChhhhhhChHHHH
Confidence            344555445666778889999999999766653

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=81.81  E-value=1.1  Score=34.84  Aligned_cols=29  Identities=17%  Similarity=0.193  Sum_probs=23.0

Q ss_pred             HHhccccceeecc-----ccChhhHHHHHhHHhh
Q 022610          261 KHLHAIGAKMYGA-----FWCSHCLEQKQVLHQS  289 (294)
Q Consensus       261 ~~L~~~ga~~yga-----~wCp~C~~Qk~lfg~~  289 (294)
                      +.+++..+++|.-     .|||+|++-|++|-+.
T Consensus         3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~   36 (90)
T cd03028           3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL   36 (90)
T ss_pred             hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc
Confidence            4566677888854     6999999999999653

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=81.72  E-value=0.86  Score=34.48  Aligned_cols=21  Identities=24%  Similarity=0.556  Sum_probs=18.0

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..+|.+.||++|++.++.|-+
T Consensus        17 ~i~f~~~~C~~c~~~~~~~~~   37 (102)
T TIGR01126        17 LVEFYAPWCGHCKNLAPEYEK   37 (102)
T ss_pred             EEEEECCCCHHHHhhChHHHH
Confidence            579999999999998877755

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=81.52  E-value=1  Score=34.68  Aligned_cols=22  Identities=23%  Similarity=0.501  Sum_probs=19.2

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ..+|+-.+||+|++-|+++-+.
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~   24 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK   24 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc
Confidence            5799999999999999998653

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=81.43  E-value=1.2  Score=33.88  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=19.2

Q ss_pred             ceeeccccChhhHHHHHhHHhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ..+|.+.||++|++.++.|.+-+
T Consensus        18 ~v~f~~~~C~~C~~~~~~l~~l~   40 (97)
T cd02984          18 VLHFWAPWAEPCKQMNQVFEELA   40 (97)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHH
Confidence            46788999999999999887643

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PRK09381 trxA thioredoxin; Provisional

Probab=80.14  E-value=1.3  Score=34.68  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=20.0

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.-..++-+.|||+|..++..|.+-
T Consensus        22 ~~vvv~f~~~~C~~C~~~~p~~~~l   46 (109)
T PRK09381         22 GAILVDFWAEWCGPCKMIAPILDEI   46 (109)
T ss_pred             CeEEEEEECCCCHHHHHHhHHHHHH
Confidence            3446788899999999999888753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
3kp9_A	291	Structure Of A Bacterial Homolog Of Vitamin K Epoxi		3e-11
3kp8_A	106	The Thioredoxin-Like Domain Of A Vkor Homolog From		8e-07

>pdb|3KP9|A Chain A, Structure Of A Bacterial Homolog Of Vitamin K Epoxide Reductase Length = 291

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 92/224 (41%), Gaps = 38/224 (16%)
Query: 69  IGGVGFLETTYLSYLKLTNSDA-FCPIGGASCGDVLNSDYAVVFGVP------LPFIGMF 121
           + G+G L T YL+Y KLT   A FC  G      VL+S +A   G+P      L F+G+ 
Sbjct: 26  LAGLGSLLTAYLTYTKLTEQPAAFC-TGDGGSDLVLSSRWAEFLGIPTAAVGLLGFLGVL 84
Query: 122 AYXXXXXXXXXXXRKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYC 181
           A            R  +P           L G  ++M A   Y LY++        C YC
Sbjct: 85  ALAVLPDGLPLVKRWRWPA----------LFGLVSAMTAFEMYMLYLMVAVLR-QFCMYC 133
Query: 182 XXXXXXXXXXXXXXXXXXXVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANL 241
                              V   + + G +L  + ++VA L T  ++I   ++ V     
Sbjct: 134 TTAIILVAGLGLVT-----VLGHRWLDGGKLAFSYILVAFL-TLVTTIGVYANQVP---- 183
Query: 242 PFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQV 285
                      SP A+ LA HL  IG  MYGA+WC HC +QK++
Sbjct: 184 ---------PPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKEL 218

>pdb|3KP8|A Chain A, The Thioredoxin-Like Domain Of A Vkor Homolog From Synechococcus Sp Length = 106

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 253 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVL 286
           SP A+ LA HL  IG  MYGA+WC HC +QK++ 
Sbjct: 1   SPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELF 34

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	7e-35
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	5e-12

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Length = 291

 Score =  126 bits (317), Expect = 7e-35
 Identities = 62/250 (24%), Positives = 97/250 (38%), Gaps = 26/250 (10%)

Query: 44  SDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVL 103
           S   L+                 A + G+G L T YL+Y KLT   A    G      VL
Sbjct: 3   SYLKLKAQEETWLQR--HSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGDGGSDLVL 60

Query: 104 NSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASA 163
           +S +A   G+P   +G+  +  V  L +L           + +    L G  ++M A   
Sbjct: 61  SSRWAEFLGIPTAAVGLLGFLGVLALAVLPDGLPLV----KRWRWPALFGLVSAMTAFEM 116

Query: 164 YFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALS 223
           Y LY++        C YC T+ +L   L  +++      +  K+    + +A L +    
Sbjct: 117 YMLYLMVAVL-RQFCMYCTTAIILVAGLGLVTVLGHRWLDGGKLAFSYILVAFLTLVTTI 175

Query: 224 TSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQK 283
             Y++  P                     SP A+ LA HL  IG  MYGA+WC HC +QK
Sbjct: 176 GVYANQVP-------------------PPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQK 216

Query: 284 QVLHQSLTYN 293
           ++   +    
Sbjct: 217 ELFGAAFDQV 226

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Length = 106

 Score = 60.5 bits (146), Expect = 5e-12
 Identities = 19/37 (51%), Positives = 25/37 (67%)

Query: 253 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS 289
           SP A+ LA HL  IG  MYGA+WC HC +QK++   +
Sbjct: 1   SPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAA 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	100.0
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.07
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	96.85
1kte_A	105	Thioltransferase; redox-active center, electron tr	96.48
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	95.74
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	95.46
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	95.42
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	95.4
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	95.21
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	95.18
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	95.17
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	95.1
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	95.04
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	94.96
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	94.94
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	94.88
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	94.81
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	94.76
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	94.75
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	94.56
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	94.39
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	94.35
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	94.32
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	94.31
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	94.28
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	94.28
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	94.21
2kuc_A	130	Putative disulphide-isomerase; structural genomics	94.2
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	94.07
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	94.05
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	94.02
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	94.02
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	93.87
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	93.85
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	93.71
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	93.66
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	93.57
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	93.52
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	93.48
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	93.47
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	93.46
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	93.43
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	93.42
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	93.35
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	93.31
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	93.27
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	93.25
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	93.22
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	93.21
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	93.1
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	93.1
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	93.05
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	93.04
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	93.03
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	92.95
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	92.94
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	92.94
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	92.9
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	92.86
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	92.81
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	92.8
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	92.8
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	92.77
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	92.77
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	92.76
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	92.73
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	92.71
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	92.69
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	92.61
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	92.51
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	92.49
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	91.68
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	92.44
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	92.43
1ttz_A	87	Conserved hypothetical protein; structural genomic	92.41
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	92.39
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	92.35
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	92.33
1mek_A	120	Protein disulfide isomerase; electron transport, r	92.28
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	92.27
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	91.43
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	92.13
2l57_A	126	Uncharacterized protein; structural genomics, unkn	92.05
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	91.96
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	91.95
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	91.9
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	91.85
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	91.85
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	91.8
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	91.71
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	91.66
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	91.51
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	91.42
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	91.28
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	91.18
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	91.09
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	91.03
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	90.83
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	90.78
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	90.73
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	90.69
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	90.67
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	90.59
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	90.27
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	90.12
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	89.98
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	89.97
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	89.79
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	89.78
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	89.73
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	89.68
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	89.51
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	89.37
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	89.26
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	89.06
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	88.88
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	88.78
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	88.61
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	88.57
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	88.53
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	88.53
4evm_A	138	Thioredoxin family protein; structural genomics, n	88.25
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	88.17
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	88.16
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	88.15
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	88.08
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	87.98
3ira_A	173	Conserved protein; methanosarcina mazei,structural	87.91
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	87.14
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	87.12
3raz_A	151	Thioredoxin-related protein; structural genomics,	86.98
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	86.59
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	85.94
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	85.75
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	85.55
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	85.6
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	85.14
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	85.05
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	84.93
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	84.88
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	84.76
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	84.7
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	84.11
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	84.03
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	83.74
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	83.62
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	83.62
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	82.63
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	82.53
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	82.44
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	82.39
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	82.36
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	82.23
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	81.63
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	81.1
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	81.06
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	80.99
2zuq_A	176	Disulfide bond formation protein B; disulfide bond	80.83
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	80.74
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	80.72
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	80.69
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	80.6
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	80.45

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=100.00  E-value=4.1e-50  Score=375.98  Aligned_cols=204  Identities=29%  Similarity=0.477  Sum_probs=178.9

Q ss_pred             hhHHH-HHHHHHHHHHHHHHHHhHhcC-CCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-ccccC
Q 022610           62 PYGWC-AGIGGVGFLETTYLSYLKLTN-SDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-ARKSF  138 (294)
Q Consensus        62 ~~~w~-l~La~iGll~S~YLt~~kl~~-~~~~C~i~~~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~~-~~~~l  138 (294)
                      ..+|. ++++++|+++|+||+++|+++ ++++||+| .||++|++||||++||+||+++|+++|++++++++.+ .++++
T Consensus        18 ~~~~~~~~l~~iGl~~s~yLt~~~~~~~~~~~C~~~-~sC~~Vl~S~~a~~fGiP~~~~G~~~y~~v~~l~~~~~~~~~~   96 (291)
T 3kp9_A           18 HSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGD-GGSDLVLSSRWAEFLGIPTAAVGLLGFLGVLALAVLPDGLPLV   96 (291)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHHHHHHHCCCCSCCCC----CCSGGGSSSSEETTEEHHHHHHHHHHHHHHHHHCC--CTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CChhhhcccccHhhcCCcHHHHHHHHHHHHHHHHHHHhhccch
Confidence            34444 778889999999999999987 88999997 7999999999999999999999999999999999864 34555


Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 022610          139 PIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLV  218 (294)
Q Consensus       139 ~~~l~~~~~rw~ll~ls~~mav~s~yLlyil~~~vI~alC~yC~~S~~isi~Lf~ltl~~~~~~d~~q~~~~~~~va~~~  218 (294)
                      ++    +.| +.++..++++.+++.||+|++.++ |+++|+||+++|+++++||+++++|++|+|++|+++++++|+++|
T Consensus        97 ~~----~~~-~~l~~~~~~~~~fs~yL~y~~~~v-i~a~C~~C~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~  170 (291)
T 3kp9_A           97 KR----WRW-PALFGLVSAMTAFEMYMLYLMVAV-LRQFCMYCTTAIILVAGLGLVTVLGHRWLDGGKLAFSYILVAFLT  170 (291)
T ss_dssp             ST----THH-HHHHHHHHHHHHHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHSSCHHHHCTHHHHHHHHHHHHH
T ss_pred             hh----HHH-HHHHHHHHHHHHHHHHHHHHHHHH-HCCCcHHHHHHHHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHH
Confidence            43    223 356666788899999999999886 899999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccCCCCCCccccccCCCCCcccccCCCChhHHHHHHHhccccceeeccccChhhHHHHHhHHhhhh
Q 022610          219 VAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSLT  291 (294)
Q Consensus       219 ~~~l~~~y~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~a~  291 (294)
                      +++++++|++.+                   ++|+|+++++||||++.++++|.|.|||||+++|..|.+.|.
T Consensus       171 ~~~~~~~~~~~~-------------------~~s~~~~~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~  224 (291)
T 3kp9_A          171 LVTTIGVYANQV-------------------PPPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFD  224 (291)
T ss_dssp             HHHHHHHHHTTS-------------------CCCCSTHHHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHhcCC-------------------CCCCHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence            999999998742                   248999999999999999999999999999999999998763

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.07  E-value=2.8e-06  Score=66.86  Aligned_cols=38  Identities=50%  Similarity=1.120  Sum_probs=35.3

Q ss_pred             ChhHHHHHHHhccccceeeccccChhhHHHHHhHHhhh
Q 022610          253 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       253 ~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      +|++++||+++++..+++|.|.|||||++++..|.+-+
T Consensus         1 ~~~~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a   38 (106)
T 3kp8_A            1 SPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAF   38 (106)
T ss_dssp             CHHHHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGG
T ss_pred             ChHhhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999998755

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=96.85  E-value=0.00075  Score=52.50  Aligned_cols=38  Identities=26%  Similarity=0.500  Sum_probs=32.6

Q ss_pred             CChhHHHHHHHhccccceeeccccChhhHHHHHhHHhh
Q 022610          252 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       252 s~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +......+.+.+++...++|++.|||+|++.|++|.+.
T Consensus         5 ~~~~~~~~~~~i~~~~v~vy~~~~Cp~C~~~~~~L~~~   42 (113)
T 3rhb_A            5 GSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRL   42 (113)
T ss_dssp             -CHHHHHHHHHHHHSSEEEEECTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCEEEEECCCChhHHHHHHHHHHc
Confidence            45567778888899999999999999999999999764

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=96.48  E-value=0.0018  Score=49.15  Aligned_cols=34  Identities=12%  Similarity=0.190  Sum_probs=28.8

Q ss_pred             HHHHHHhccccceeeccccChhhHHHHHhHHhhh
Q 022610          257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ..+.+.+++...++|++.|||+|++.|++|.+-+
T Consensus         3 ~~~~~~i~~~~v~~f~~~~C~~C~~~~~~L~~~~   36 (105)
T 1kte_A            3 AFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLP   36 (105)
T ss_dssp             HHHHHHCCTTCEEEEECSSCHHHHHHHHHHHHSC
T ss_pred             hHHHhhcccCCEEEEEcCCCHhHHHHHHHHHHcC
Confidence            4566777888899999999999999999998643

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=95.74  E-value=0.0045  Score=44.70  Aligned_cols=21  Identities=19%  Similarity=0.564  Sum_probs=19.3

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|++.|||+|++.|++|.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~   23 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEK   23 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHH
Confidence            578999999999999999986

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=95.46  E-value=0.0099  Score=46.66  Aligned_cols=35  Identities=11%  Similarity=0.282  Sum_probs=29.7

Q ss_pred             hHHHHHHHhccccceeeccccChhhHHHHHhHHhh
Q 022610          255 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       255 ~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ....+-+..++...++|+..|||+|++-|+++-+.
T Consensus         6 ~~~~~~~~i~~~~v~vy~~~~Cp~C~~ak~~L~~~   40 (114)
T 3h8q_A            6 LRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSL   40 (114)
T ss_dssp             HHHHHHHHHHHCSEEEEECTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHc
Confidence            34567777788899999999999999999999763

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.42  E-value=0.013  Score=47.05  Aligned_cols=35  Identities=14%  Similarity=0.273  Sum_probs=28.5

Q ss_pred             hHHHHHHHhccccceeeccccChhhHHHHHhHHhh
Q 022610          255 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       255 ~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ....+.+.+++...++|++.|||+|++.|++|.+-
T Consensus        16 ~~~~~~~~i~~~~vvvf~~~~Cp~C~~~~~~L~~~   50 (130)
T 2cq9_A           16 PVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDM   50 (130)
T ss_dssp             HHHHHHHHHHHSSEEEEECSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcEEEEEcCCChHHHHHHHHHHHc
Confidence            34556666777778999999999999999999763

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=95.40  E-value=0.011  Score=45.06  Aligned_cols=32  Identities=19%  Similarity=0.338  Sum_probs=25.2

Q ss_pred             HHHHHhccccceeeccccChhhHHHHHhHHhh
Q 022610          258 SLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       258 ~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .+.+.++....+.|++.|||+|++.+..|.+-
T Consensus        12 ~~~~~~~~~~vv~f~a~~C~~C~~~~~~l~~~   43 (116)
T 2e7p_A           12 KAKELASSAPVVVFSKTYCGYCNRVKQLLTQV   43 (116)
T ss_dssp             HHHHHHTSSSEEEEECTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEECCCChhHHHHHHHHHHc
Confidence            34455556667889999999999999998764

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=95.21  E-value=0.0098  Score=46.41  Aligned_cols=34  Identities=12%  Similarity=0.300  Sum_probs=28.1

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHHhHHhh
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +..+-+.+++...++|++.|||+|.+.|++|.+.
T Consensus         9 ~~~~~~~i~~~~vv~f~~~~Cp~C~~~~~~L~~~   42 (114)
T 2hze_A            9 EEFVQQRLANNKVTIFVKYTCPFCRNALDILNKF   42 (114)
T ss_dssp             HHHHHTTCCTTCEEEEECTTCHHHHHHHHHHTTS
T ss_pred             HHHHHHHhccCCEEEEEeCCChhHHHHHHHHHHc
Confidence            4456666677788999999999999999999764

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=95.18  E-value=0.0091  Score=42.87  Aligned_cols=22  Identities=18%  Similarity=0.447  Sum_probs=19.5

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|++.|||+|++.|+++.+.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~   24 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR   24 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT
T ss_pred             EEEEcCCCChhHHHHHHHHHHC
Confidence            4789999999999999998753

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=95.17  E-value=0.012  Score=46.59  Aligned_cols=38  Identities=8%  Similarity=0.140  Sum_probs=31.1

Q ss_pred             CChhHHHHHHHhccccceeeccccChhhHHH-HHhHHhh
Q 022610          252 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQ-KQVLHQS  289 (294)
Q Consensus       252 s~~~~~~la~~L~~~ga~~yga~wCp~C~~Q-k~lfg~~  289 (294)
                      |......+.+..++...+.|++.|||+|.+. |++|.+.
T Consensus        11 ~~~~~~~~~~~i~~~~Vvvf~~~~Cp~C~~alk~~L~~~   49 (118)
T 3c1r_A           11 SQETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKL   49 (118)
T ss_dssp             CHHHHHHHHHHHHHSSEEEEECSSCHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHccCcEEEEEcCCCcCHHHHHHHHHHHc
Confidence            4455566777777788999999999999999 9998754

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=95.10  E-value=0.0051  Score=43.82  Aligned_cols=23  Identities=22%  Similarity=0.644  Sum_probs=19.9

Q ss_pred             ccceeeccccChhhHHHHHhHHh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .-.++|.+.|||+|++.+..|.+
T Consensus         4 ~~vv~f~~~~C~~C~~~~~~l~~   26 (85)
T 1fo5_A            4 VKIELFTSPMCPHCPAAKRVVEE   26 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHH
T ss_pred             eEEEEEeCCCCCchHHHHHHHHH
Confidence            34578999999999999999876

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=95.04  E-value=0.011  Score=41.50  Aligned_cols=21  Identities=24%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|++.|||+|++.|+++.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~   23 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDR   23 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHH
Confidence            478999999999999999875

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=94.96  E-value=0.012  Score=45.10  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=20.9

Q ss_pred             ccceeeccccChhhHHHHHhHHhh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ...++|++.|||+|++.|+++.+.
T Consensus        22 ~~v~ly~~~~Cp~C~~ak~~L~~~   45 (103)
T 3nzn_A           22 GKVIMYGLSTCVWCKKTKKLLTDL   45 (103)
T ss_dssp             SCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHc
Confidence            347899999999999999998754

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=94.94  E-value=0.016  Score=48.00  Aligned_cols=35  Identities=14%  Similarity=0.273  Sum_probs=29.2

Q ss_pred             hHHHHHHHhccccceeeccccChhhHHHHHhHHhh
Q 022610          255 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       255 ~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ....+.+.+++...+.|++.|||+|.+.|++|.+.
T Consensus        38 ~~~~~~~~i~~~~Vvvf~~~~Cp~C~~~k~~L~~~   72 (146)
T 2ht9_A           38 PVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDM   72 (146)
T ss_dssp             CHHHHHHHHHHCSEEEEECTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEECCCChhHHHHHHHHHHc
Confidence            34566677777789999999999999999999764

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=94.88  E-value=0.013  Score=42.38  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             cceeeccccChhhHHHHHhHHhh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      -.++|+..|||+|++.|+++.+.
T Consensus         5 ~v~ly~~~~Cp~C~~~~~~L~~~   27 (89)
T 3msz_A            5 KVKIYTRNGCPYCVWAKQWFEEN   27 (89)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT
T ss_pred             EEEEEEcCCChhHHHHHHHHHHc
Confidence            46899999999999999999753

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=94.81  E-value=0.0084  Score=42.65  Aligned_cols=22  Identities=14%  Similarity=0.362  Sum_probs=19.4

Q ss_pred             cceeeccccChhhHHHHHhHHh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      -.++|.+.|||+|++.+..|.+
T Consensus         4 ~vv~f~~~~C~~C~~~~~~l~~   25 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIEVVDE   25 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHHH
Confidence            3578999999999999998876

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=94.76  E-value=0.015  Score=45.32  Aligned_cols=30  Identities=27%  Similarity=0.612  Sum_probs=22.9

Q ss_pred             HHHHHhccccceeeccccChhhHHHHHhHH
Q 022610          258 SLAKHLHAIGAKMYGAFWCSHCLEQKQVLH  287 (294)
Q Consensus       258 ~la~~L~~~ga~~yga~wCp~C~~Qk~lfg  287 (294)
                      +.|+.=++.=.++|.+.|||+|++.+..|.
T Consensus        23 ~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~   52 (133)
T 3fk8_A           23 AAGKRTHKPTLLVFGANWCTDCRALDKSLR   52 (133)
T ss_dssp             HHHHHHTCCEEEEEECTTCHHHHHHHHHHT
T ss_pred             HHHHhcCCcEEEEEcCCCCHHHHHHHHHhC
Confidence            333333455578999999999999998887

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=94.75  E-value=0.027  Score=43.26  Aligned_cols=36  Identities=8%  Similarity=0.128  Sum_probs=29.4

Q ss_pred             hhHHHHHHHhccccceeecc-----ccChhhHHHHHhHHhh
Q 022610          254 PFALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQVLHQS  289 (294)
Q Consensus       254 ~~~~~la~~L~~~ga~~yga-----~wCp~C~~Qk~lfg~~  289 (294)
                      .....+.+.+++..++.|..     .|||+|++.|++|.+.
T Consensus         5 ~~~~~~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~   45 (105)
T 2yan_A            5 KLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNST   45 (105)
T ss_dssp             HHHHHHHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHC
Confidence            34556677777778999998     9999999999999753

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=94.56  E-value=0.016  Score=42.68  Aligned_cols=23  Identities=17%  Similarity=0.414  Sum_probs=20.2

Q ss_pred             cceeeccccChhhHHHHHhHHhh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ..+.|++.|||+|++.|+++.+.
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~   29 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKK   29 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHH
T ss_pred             eEEEEECCCChhHHHHHHHHHHc
Confidence            36799999999999999999764

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=94.39  E-value=0.037  Score=40.95  Aligned_cols=28  Identities=21%  Similarity=0.408  Sum_probs=23.4

Q ss_pred             ccccceeeccccChhhHHHHHhHHhhhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQSLT  291 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~a~  291 (294)
                      ++.=.++|.+.|||+|++.+..|.+-+.
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~   48 (111)
T 3uvt_A           21 EGITFIKFYAPWCGHCKTLAPTWEELSK   48 (111)
T ss_dssp             SSEEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHH
Confidence            5666789999999999999998887543

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=94.35  E-value=0.021  Score=41.86  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=20.2

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.-..+|.+.|||+|++++..|.+
T Consensus        19 ~~~~v~f~~~~C~~C~~~~~~~~~   42 (105)
T 1fb6_A           19 VPVMVDFWAPWCGPCKLIAPVIDE   42 (105)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCChHHHHHHHHHHH
Confidence            444678999999999999998865

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=94.32  E-value=0.018  Score=44.45  Aligned_cols=24  Identities=29%  Similarity=0.715  Sum_probs=21.1

Q ss_pred             ccceeeccccChhhHHHHHhHHhh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ...+.|+..|||+|.+-|++|.+.
T Consensus         4 a~I~vYs~~~Cp~C~~aK~~L~~~   27 (92)
T 2lqo_A            4 AALTIYTTSWCGYCLRLKTALTAN   27 (92)
T ss_dssp             SCEEEEECTTCSSHHHHHHHHHHT
T ss_pred             CcEEEEcCCCCHhHHHHHHHHHhc
Confidence            456899999999999999999764

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=94.31  E-value=0.041  Score=40.49  Aligned_cols=27  Identities=15%  Similarity=0.288  Sum_probs=22.3

Q ss_pred             ccccceeeccccChhhHHHHHhHHhhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++.=..+|.+.|||+|++.+..|.+-+
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~   47 (109)
T 3tco_A           21 NKLVLVDCWAEWCAPCHLYEPIYKKVA   47 (109)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCHHHHhhhHHHHHHH
Confidence            455578999999999999998887643

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=94.28  E-value=0.021  Score=40.77  Aligned_cols=21  Identities=24%  Similarity=0.493  Sum_probs=19.0

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|++.|||+|++.|+++.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~   23 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSS   23 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCChhHHHHHHHHHH
Confidence            578999999999999999875

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=94.28  E-value=0.022  Score=41.21  Aligned_cols=21  Identities=14%  Similarity=0.392  Sum_probs=18.1

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|.+.|||+|++.|+.+-+
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~   24 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVAN   24 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHH
T ss_pred             eEEEeCCCCCchHHHHHHHHH
Confidence            578999999999999996654

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=94.21  E-value=0.023  Score=41.90  Aligned_cols=22  Identities=32%  Similarity=0.650  Sum_probs=19.7

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .+.|++.|||+|++.|+++.+.
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~   35 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKRE   35 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHc
Confidence            6799999999999999998753

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=94.20  E-value=0.038  Score=42.56  Aligned_cols=39  Identities=23%  Similarity=0.249  Sum_probs=29.1

Q ss_pred             ccCCCChhHHHHHHHhccccceeeccccChhhHHHHHhH
Q 022610          248 ITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVL  286 (294)
Q Consensus       248 i~~~s~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lf  286 (294)
                      ++..+-...+++++.=++.-.++|.+.|||+|++++..+
T Consensus        11 ~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~   49 (130)
T 2kuc_A           11 FRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVV   49 (130)
T ss_dssp             CBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHG
T ss_pred             cccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHh
Confidence            333444556777766667778899999999999988776

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=94.07  E-value=0.031  Score=41.12  Aligned_cols=27  Identities=22%  Similarity=0.473  Sum_probs=22.0

Q ss_pred             ccccceeeccccChhhHHHHHhHHhhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++.-..+|.+.|||+|++.+..+.+-+
T Consensus        20 ~~~~~v~f~~~~C~~C~~~~~~~~~~~   46 (105)
T 3m9j_A           20 DKLVVVDFSATWCGPCKMIKPFFHSLS   46 (105)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCChhhHHHHHHHHHHH
Confidence            455568899999999999999887643

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=94.05  E-value=0.042  Score=41.89  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=20.5

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.-.++|+|.|||||++.+..|-+-
T Consensus        30 ~~~~v~f~a~wC~~C~~~~p~l~~~   54 (118)
T 1zma_A           30 ETATFFIGRKTCPYCRKFAGTLSGV   54 (118)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCccHHHHHHHHHHH
Confidence            4457899999999999998877653

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=94.02  E-value=0.038  Score=42.74  Aligned_cols=33  Identities=24%  Similarity=0.455  Sum_probs=24.6

Q ss_pred             HHHHHhcccc----ceeeccccChhhHHHHHhHHhhh
Q 022610          258 SLAKHLHAIG----AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       258 ~la~~L~~~g----a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++-+.|++.+    .+.|.|.||++|.+.+..|-+-+
T Consensus        10 ~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~   46 (105)
T 3zzx_A           10 DFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELS   46 (105)
T ss_dssp             HHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhh
Confidence            4555565543    56789999999999999887644

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=94.02  E-value=0.052  Score=41.72  Aligned_cols=26  Identities=19%  Similarity=0.315  Sum_probs=21.1

Q ss_pred             ccccceeeccccChhhHHHHHhHHhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++.-.++|.+.|||+|.+.+..|-+-
T Consensus        30 ~k~vvv~F~a~wC~~C~~~~p~l~~~   55 (114)
T 2oe3_A           30 NDKLVIDFYATWCGPCKMMQPHLTKL   55 (114)
T ss_dssp             CSEEEEEEECTTCHHHHHTHHHHHHH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHH
Confidence            34456889999999999999888654

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=93.87  E-value=0.042  Score=42.28  Aligned_cols=25  Identities=20%  Similarity=0.464  Sum_probs=20.7

Q ss_pred             ccccceeeccccChhhHHHHHhHHh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ++.=.++|.+.|||+|++.+..|.+
T Consensus        35 ~~~~lv~f~a~wC~~C~~~~~~~~~   59 (130)
T 2dml_A           35 DGLWLVEFYAPWCGHCQRLTPEWKK   59 (130)
T ss_dssp             SSCEEEEEECTTCSTTGGGHHHHHH
T ss_pred             CCeEEEEEECCCCHHHHhhCHHHHH
Confidence            3445689999999999999988865

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=93.85  E-value=0.051  Score=40.75  Aligned_cols=26  Identities=19%  Similarity=0.382  Sum_probs=21.6

Q ss_pred             ccccceeeccccChhhHHHHHhHHhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++.=..+|.+.|||+|++.+..|-+-
T Consensus        28 ~~~~vv~f~~~~C~~C~~~~~~l~~~   53 (118)
T 2vm1_A           28 GKLVIIDFTASWCGPCRVIAPVFAEY   53 (118)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCHhHHHHhHHHHHH
Confidence            44557889999999999999988764

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=93.71  E-value=0.042  Score=44.81  Aligned_cols=39  Identities=10%  Similarity=0.187  Sum_probs=28.6

Q ss_pred             ccCCCChhHHHHHHHhccccceeeccccChhhHHH-HHhH
Q 022610          248 ITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQ-KQVL  286 (294)
Q Consensus       248 i~~~s~~~~~~la~~L~~~ga~~yga~wCp~C~~Q-k~lf  286 (294)
                      .+...=..++++|+.=++.=...|.|.|||+|++. +++|
T Consensus        31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~   70 (172)
T 3f9u_A           31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVW   70 (172)
T ss_dssp             CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTT
T ss_pred             cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhc
Confidence            33444456677777777777889999999999994 5554

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=93.66  E-value=0.052  Score=42.46  Aligned_cols=27  Identities=15%  Similarity=0.177  Sum_probs=21.9

Q ss_pred             hccccceeeccccChhhHHHHHhHHhh
Q 022610          263 LHAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       263 L~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      =++.-.++|.+.|||+|++++..|.+-
T Consensus        45 ~~k~vvv~f~a~wC~~C~~~~~~l~~l   71 (139)
T 3d22_A           45 DGKIVLANFSARWCGPSRQIAPYYIEL   71 (139)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHH
Confidence            355567889999999999999888653

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=93.57  E-value=0.046  Score=39.97  Aligned_cols=25  Identities=16%  Similarity=0.317  Sum_probs=20.5

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.-..+|.+.|||+|++.+..|.+-
T Consensus        20 ~~~~v~f~~~~C~~C~~~~~~l~~~   44 (104)
T 2vim_A           20 RLIVVDFFAQWCGPCRNIAPKVEAL   44 (104)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCHHHHHhhHHHHHH
Confidence            3445788999999999999988763

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=93.52  E-value=0.055  Score=41.37  Aligned_cols=26  Identities=12%  Similarity=0.164  Sum_probs=21.0

Q ss_pred             ccccceeeccccChhhHHHHHhHHhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++.-.++|.+.|||+|++++..|.+-
T Consensus        37 ~~~~vv~f~a~wC~~C~~~~~~l~~~   62 (124)
T 1faa_A           37 DKPVVLDMFTQWCGPCKAMAPKYEKL   62 (124)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCcCHhHHHHhHHHHHH
Confidence            34456788899999999999988653

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=93.48  E-value=0.059  Score=39.48  Aligned_cols=26  Identities=23%  Similarity=0.480  Sum_probs=21.3

Q ss_pred             ccccceeeccccChhhHHHHHhHHhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .+.-..+|.+.|||+|++++..|.+-
T Consensus        18 ~~~~lv~f~~~~C~~C~~~~~~l~~~   43 (109)
T 2yzu_A           18 HPLVLVDFWAEWCAPCRMIAPILEEI   43 (109)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHH
Confidence            34556889999999999999988653

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=93.47  E-value=0.03  Score=41.47  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=20.0

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.-..+|.+.|||+|++++..|.+
T Consensus        20 ~~~lv~f~~~~C~~C~~~~~~l~~   43 (107)
T 1dby_A           20 VPVLVDFWAPWCGPCRIIAPVVDE   43 (107)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCHhHHHHHHHHHH
Confidence            344678999999999999998865

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=93.46  E-value=0.038  Score=38.72  Aligned_cols=20  Identities=20%  Similarity=0.599  Sum_probs=16.1

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..+|+. |||+|++.+..+.+
T Consensus         4 v~f~a~-wC~~C~~~~~~l~~   23 (77)
T 1ilo_A            4 IQIYGT-GCANCQMLEKNARE   23 (77)
T ss_dssp             EEEECS-SSSTTHHHHHHHHH
T ss_pred             EEEEcC-CChhHHHHHHHHHH
Confidence            356765 99999999998865

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=93.43  E-value=0.037  Score=40.77  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.0

Q ss_pred             cceeeccccChhhHHHHHhHHhh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ..+.|++.|||+|++.|+++.+.
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~   29 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK   29 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT
T ss_pred             cEEEEECCCChhHHHHHHHHHHc
Confidence            36799999999999999998753

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=93.42  E-value=0.079  Score=40.18  Aligned_cols=35  Identities=17%  Similarity=0.332  Sum_probs=24.8

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHHhHHhhh
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ...+.++=++.-.++|.+.|||+|++.+..|.+-+
T Consensus        25 ~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~   59 (117)
T 2xc2_A           25 ESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELS   59 (117)
T ss_dssp             HHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHH
Confidence            33444333344567899999999999999887643

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=93.35  E-value=0.04  Score=42.43  Aligned_cols=24  Identities=17%  Similarity=0.415  Sum_probs=21.0

Q ss_pred             ccceeeccccChhhHHHHHhHHhh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ...++|+..|||+|.+.|+++.+.
T Consensus        16 ~~v~vy~~~~Cp~C~~ak~~L~~~   39 (99)
T 3qmx_A           16 AKIEIYTWSTCPFCMRALALLKRK   39 (99)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCChhHHHHHHHHHHC
Confidence            456799999999999999999764

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=93.31  E-value=0.049  Score=40.83  Aligned_cols=25  Identities=8%  Similarity=0.013  Sum_probs=20.5

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.=..+|.+.|||+|++++..|.+-
T Consensus        25 ~~vlv~f~a~wC~~C~~~~~~l~~~   49 (111)
T 2pu9_C           25 KPVVLDMFTQWCGPSKAMAPKYEKL   49 (111)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCcCHhHHHHCHHHHHH
Confidence            3446789999999999999988763

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=93.27  E-value=0.04  Score=41.07  Aligned_cols=23  Identities=17%  Similarity=0.391  Sum_probs=19.7

Q ss_pred             ccceeeccccChhhHHHHHhHHh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .-..+|.+.|||+|++++..|.+
T Consensus        27 ~~lv~f~~~~C~~C~~~~~~l~~   49 (115)
T 1thx_A           27 PVLVYFWASWCGPCQLMSPLINL   49 (115)
T ss_dssp             CEEEEEECTTCTTHHHHHHHHHH
T ss_pred             eEEEEEECCCCHHHHHhHHHHHH
Confidence            34689999999999999998865

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=93.25  E-value=0.043  Score=40.23  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=20.5

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.=..+|.+.|||+|++.+..+.+-
T Consensus        20 ~~~lv~f~~~~C~~C~~~~~~~~~~   44 (106)
T 3die_A           20 GVQLVDFWATACGPCKMIAPVLEEL   44 (106)
T ss_dssp             SEEEEEEECSBCHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCHHHHHHhHHHHHH
Confidence            3446788999999999999888654

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=93.22  E-value=0.07  Score=39.71  Aligned_cols=25  Identities=12%  Similarity=0.278  Sum_probs=20.6

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.=..+|.+.|||+|++.+..|.+-
T Consensus        22 ~~v~v~f~a~wC~~C~~~~~~~~~~   46 (107)
T 1gh2_A           22 RLAVVKFTMRGCGPCLRIAPAFSSM   46 (107)
T ss_dssp             SCEEEEEECSSCHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCChhhHHHHHHHHHH
Confidence            3446789999999999999988763

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=93.21  E-value=0.043  Score=40.60  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=20.0

Q ss_pred             ccceeeccccChhhHHHHHhHHhh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .-..+|.+.|||+|++.+..|.+-
T Consensus        22 ~~~v~f~~~~C~~C~~~~~~l~~~   45 (108)
T 2trx_A           22 AILVDFWAEWCGPCKMIAPILDEI   45 (108)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCHhHHHHHHHHHHH
Confidence            345789999999999999988653

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=93.10  E-value=0.057  Score=40.15  Aligned_cols=26  Identities=15%  Similarity=0.410  Sum_probs=21.0

Q ss_pred             ccccceeeccccChhhHHHHHhHHhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++.-..+|.+.|||+|+++++.|-+-
T Consensus        26 ~~~~vv~f~~~~C~~C~~~~~~l~~~   51 (113)
T 1ti3_A           26 QKLIVVDFTASWCPPCKMIAPIFAEL   51 (113)
T ss_dssp             SSEEEEEEECSSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHH
Confidence            34456789999999999999888654

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=93.10  E-value=0.062  Score=40.01  Aligned_cols=26  Identities=19%  Similarity=0.387  Sum_probs=21.3

Q ss_pred             ccccceeeccccChhhHHHHHhHHhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++.=..+|.+.|||+|++++..|-+-
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~   49 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETL   49 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHH
Confidence            44556889999999999999988653

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=93.05  E-value=0.045  Score=40.92  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=19.6

Q ss_pred             ccceeeccccChhhHHHHHhHHh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .-..+|.+.|||+|++++..|.+
T Consensus        25 ~~vv~f~~~~C~~C~~~~~~l~~   47 (112)
T 1t00_A           25 PVLVDFWAAWCGPCRQIAPSLEA   47 (112)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCHhHHhcCHHHHH
Confidence            34688999999999999988865

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=93.04  E-value=0.078  Score=40.64  Aligned_cols=27  Identities=19%  Similarity=0.332  Sum_probs=21.7

Q ss_pred             ccccceeeccccChhhHHHHHhHHhhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++.=.++|.+.|||+|++.+..|-+-+
T Consensus        31 ~k~vlv~F~a~wC~~C~~~~p~l~~l~   57 (116)
T 3qfa_C           31 DKLVVVDFSATWCGPSKMIKPFFHSLS   57 (116)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHH
Confidence            345567899999999999999887643

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=93.03  E-value=0.057  Score=43.60  Aligned_cols=36  Identities=6%  Similarity=0.153  Sum_probs=29.3

Q ss_pred             hhHHHHHHHhccccceeeccccChhhHHH-HHhHHhh
Q 022610          254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQ-KQVLHQS  289 (294)
Q Consensus       254 ~~~~~la~~L~~~ga~~yga~wCp~C~~Q-k~lfg~~  289 (294)
                      .....+.+-.++...++|+..|||+|.+- |+++.+-
T Consensus        25 ~~~~~v~~~i~~~~Vvvy~~~~Cp~C~~a~k~~L~~~   61 (129)
T 3ctg_A           25 ETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQEL   61 (129)
T ss_dssp             HHHHHHHHHHHHSSEEEEECTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCCchHHHHHHHHHhc
Confidence            34556666667778999999999999999 9998754

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=92.95  E-value=0.048  Score=41.34  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=20.1

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.=.++|.|.||+||++.+..|-+
T Consensus        26 ~~vlv~f~a~wC~~C~~~~p~~~~   49 (121)
T 2djj_A           26 KDVLIEFYAPWCGHCKALAPKYEE   49 (121)
T ss_dssp             SCEEEEEECSSCTTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCHhHHHhhHHHHH
Confidence            344689999999999999988865

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=92.94  E-value=0.076  Score=38.38  Aligned_cols=25  Identities=28%  Similarity=0.664  Sum_probs=20.8

Q ss_pred             ccccceeeccccChhhHHHHHhHHh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ++.-..+|.+.|||+|++.+..|-+
T Consensus        16 ~~~~~v~f~~~~C~~C~~~~~~~~~   40 (104)
T 2e0q_A           16 HEIAVVDFWAEWCAPCLILAPIIEE   40 (104)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCChhHHHHhHHHHH
Confidence            3455688999999999999988865

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=92.94  E-value=0.083  Score=38.67  Aligned_cols=25  Identities=20%  Similarity=0.337  Sum_probs=20.6

Q ss_pred             ccccceeeccccChhhHHHHHhHHh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ++.-..+|.+.|||+|++.+..|-+
T Consensus        20 ~~~~vv~f~~~~C~~C~~~~~~l~~   44 (106)
T 1xwb_A           20 GKLVVLDFFATWCGPCKMISPKLVE   44 (106)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCcCHHHHHhhHHHHH
Confidence            3445678999999999999988865

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=92.90  E-value=0.053  Score=39.90  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             ccceeeccccChhhHHHHHhHHh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .-..+|.+.|||+|++.+..|-+
T Consensus        19 ~~~v~f~~~~C~~C~~~~~~l~~   41 (105)
T 1nsw_A           19 PVLVDFWAAWCGPCRMMAPVLEE   41 (105)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCHHHHHHHHHHHH
Confidence            34678899999999999988865

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=92.86  E-value=0.091  Score=43.30  Aligned_cols=42  Identities=14%  Similarity=0.098  Sum_probs=29.9

Q ss_pred             cccCCCChhHHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          247 EITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       247 ~i~~~s~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ++.-.+-....+.+..=.+.=.++|.|.|||+|.+.+..|-+
T Consensus        29 ~i~w~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~   70 (164)
T 1sen_A           29 HIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAE   70 (164)
T ss_dssp             TSCBCCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHT
T ss_pred             cccccCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHH
Confidence            344444445566666555566788899999999999988876

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=92.81  E-value=0.046  Score=40.97  Aligned_cols=24  Identities=21%  Similarity=0.403  Sum_probs=17.9

Q ss_pred             ccceeeccccChhhHHHHHhHHhh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .=.++|.+.|||+|++.+..|.+-
T Consensus        23 ~~~v~f~a~wC~~C~~~~~~~~~~   46 (112)
T 3d6i_A           23 LIVLYFHTSWAEPCKALKQVFEAI   46 (112)
T ss_dssp             CEEEEEECCC--CHHHHHHHHHHH
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHH
Confidence            345789999999999999988753

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=92.80  E-value=0.057  Score=39.64  Aligned_cols=24  Identities=21%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.-..+|.+.|||+|++++..|-+
T Consensus        21 ~~~lv~f~~~~C~~C~~~~~~~~~   44 (107)
T 2i4a_A           21 GLVLVDFWAEWCGPCKMIGPALGE   44 (107)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCChhHHHHhHHHHH
Confidence            344678899999999999998865

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=92.80  E-value=0.09  Score=39.62  Aligned_cols=25  Identities=16%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.-.++|.+.|||+|++.+..|.+-
T Consensus        27 k~vlv~f~a~~C~~C~~~~~~l~~l   51 (112)
T 1syr_A           27 ELVIVDFFAEWCGPCKRIAPFYEEC   51 (112)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHH
Confidence            4456789999999999999988763

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.77  E-value=0.048  Score=42.12  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             ccceeeccccChhhHHHHHhHHh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .=.++|.+.|||||++.+..|-+
T Consensus        27 ~vlv~f~a~wC~~C~~~~p~~~~   49 (133)
T 2dj3_A           27 DVLIEFYAPWCGHCKQLEPIYTS   49 (133)
T ss_dssp             EEEEEECCTTCSHHHHHHHHHHH
T ss_pred             cEEEEEECCCChhHHHHHHHHHH
Confidence            44678999999999999998876

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=92.77  E-value=0.057  Score=40.92  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             cccceeeccccChhhHHHHHhHHhhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      +.-.++|.+.|||+|++.+..|.+-+
T Consensus        20 ~~~vv~f~a~wC~~C~~~~~~l~~~~   45 (110)
T 2l6c_A           20 SDAIVFFHKNLCPHCKNMEKVLDKFG   45 (110)
T ss_dssp             SEEEEEEECSSCSTHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCHhHHHHHHHHHHHH
Confidence            34468899999999999999887643

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.76  E-value=0.057  Score=41.53  Aligned_cols=29  Identities=17%  Similarity=0.258  Sum_probs=23.5

Q ss_pred             HHhccccceeeccccChhhHHHHHhHHhh
Q 022610          261 KHLHAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       261 ~~L~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.+++.=.++|.+.|||+|++.+..|.+-
T Consensus        19 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~~   47 (126)
T 1x5e_A           19 ELLEGDWMIEFYAPWCPACQNLQPEWESF   47 (126)
T ss_dssp             HHTSSEEEEEEECSSCHHHHHHHHHHHHH
T ss_pred             HHhCCCEEEEEECCCCHHHHHHhHHHHHH
Confidence            45555567899999999999999888763

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=92.73  E-value=0.055  Score=41.49  Aligned_cols=25  Identities=20%  Similarity=0.334  Sum_probs=20.5

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.-..+|.+.|||+|++++..|.+-
T Consensus        32 k~vlv~f~a~~C~~C~~~~~~l~~~   56 (119)
T 1w4v_A           32 TPVVVDFHAQWCGPCKILGPRLEKM   56 (119)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHH
Confidence            3446889999999999999988763

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=92.71  E-value=0.061  Score=40.11  Aligned_cols=24  Identities=13%  Similarity=0.041  Sum_probs=19.9

Q ss_pred             cceeeccccChhhHHHHHhHHhhh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      =..+|.|.|||+|++.+..|.+-+
T Consensus        21 vlv~f~a~wC~~C~~~~p~~~~~~   44 (105)
T 4euy_A           21 VLLFIKTENCGVCDVMLRKVNYVL   44 (105)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcchHHHHHHHHHHH
Confidence            457899999999999998887643

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.69  E-value=0.071  Score=41.54  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=20.5

Q ss_pred             ccccceeeccccChhhHHHHHhHHh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ++.=.++|.+.||+||++.+..|-+
T Consensus        34 ~~~vlv~f~a~wC~~C~~~~p~~~~   58 (140)
T 2dj1_A           34 KDTVLLEFYAPWCGHCKQFAPEYEK   58 (140)
T ss_dssp             CSEEEEEECCTTCHHHHTTHHHHHH
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHH
Confidence            3445689999999999999888765

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=92.61  E-value=0.093  Score=39.66  Aligned_cols=32  Identities=13%  Similarity=0.339  Sum_probs=23.4

Q ss_pred             HHHHHhc--cccceeeccccChhhHHHHHhHHhh
Q 022610          258 SLAKHLH--AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       258 ~la~~L~--~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++.+.++  +.=.++|.+.|||+|++.+..|-+-
T Consensus        16 ~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l   49 (109)
T 3f3q_A           16 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKF   49 (109)
T ss_dssp             HHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHH
Confidence            3444444  3445779999999999999888663

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=92.51  E-value=0.073  Score=43.17  Aligned_cols=35  Identities=26%  Similarity=0.490  Sum_probs=24.3

Q ss_pred             CChhHHHHHHHhccccceee-ccccChhhHHHHHhH
Q 022610          252 SSPFALSLAKHLHAIGAKMY-GAFWCSHCLEQKQVL  286 (294)
Q Consensus       252 s~~~~~~la~~L~~~ga~~y-ga~wCp~C~~Qk~lf  286 (294)
                      +-...+++++.=.+.=..+| ||.|||+|.+++..+
T Consensus        35 ~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l   70 (154)
T 2ju5_A           35 SYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQI   70 (154)
T ss_dssp             CHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHH
Confidence            34556677765555545554 799999999988655

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=92.49  E-value=0.1  Score=41.10  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=30.6

Q ss_pred             hHHHHHHHhccccceeecc-----ccChhhHHHHHhHHhh
Q 022610          255 FALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQVLHQS  289 (294)
Q Consensus       255 ~~~~la~~L~~~ga~~yga-----~wCp~C~~Qk~lfg~~  289 (294)
                      ....+.+.+++..++.|.-     .|||+|.+-|++|-+.
T Consensus         5 ~~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~   44 (111)
T 3zyw_A            5 LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKH   44 (111)
T ss_dssp             HHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHc
Confidence            4567888899999999999     9999999999999753

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=91.68  E-value=0.023  Score=43.94  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=25.9

Q ss_pred             hhHHHHHHHhccccceeeccccChhhHHHHHhH
Q 022610          254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVL  286 (294)
Q Consensus       254 ~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lf  286 (294)
                      ++++++++.=++.=.++|.|.|||+|++.+..+
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~   41 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFV   41 (130)
Confidence            455666666666777889999999999988665

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=92.44  E-value=0.066  Score=39.67  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=20.4

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.=..+|.+.|||||++.+..|.+-
T Consensus        23 ~~vlv~f~a~~C~~C~~~~~~~~~~   47 (111)
T 3gnj_A           23 KACLVMFSRKNCHVCQKVTPVLEEL   47 (111)
T ss_dssp             CCEEEEEECSSCHHHHHHHHHHHHH
T ss_pred             CEEEEEEeCCCChhHHHHHHHHHHH
Confidence            3446889999999999999888653

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=92.43  E-value=0.084  Score=40.82  Aligned_cols=31  Identities=10%  Similarity=0.165  Sum_probs=26.1

Q ss_pred             HHHHhccccceeecc-----ccChhhHHHHHhHHhh
Q 022610          259 LAKHLHAIGAKMYGA-----FWCSHCLEQKQVLHQS  289 (294)
Q Consensus       259 la~~L~~~ga~~yga-----~wCp~C~~Qk~lfg~~  289 (294)
                      +.+.+++...+.|..     .|||+|++-|++|.+.
T Consensus         8 ~~~~i~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~   43 (109)
T 1wik_A            8 LKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNST   43 (109)
T ss_dssp             HHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHT
T ss_pred             HHHHhccCCEEEEEecCCCCCCCchHHHHHHHHHHc
Confidence            456667778999999     9999999999999753

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=92.41  E-value=0.059  Score=40.86  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=20.8

Q ss_pred             ceeeccccChhhHHHHHhHHhhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSLT  291 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a~  291 (294)
                      .+.|++.|||.|...|+++.+-+.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~   26 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARA   26 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCchHHHHHHHHHHHHH
Confidence            578999999999999999986543

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=92.39  E-value=0.073  Score=40.18  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=20.9

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.-..+|.+.|||+|++++..|.+-
T Consensus        31 ~~~lv~f~~~~C~~C~~~~~~~~~~   55 (121)
T 2i1u_A           31 KPVLVDFWATWCGPCKMVAPVLEEI   55 (121)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHH
Confidence            3447899999999999999988653

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=92.35  E-value=0.024  Score=43.35  Aligned_cols=32  Identities=19%  Similarity=0.306  Sum_probs=23.6

Q ss_pred             HHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++++.-.+.-..+|.+.|||+|.++...+.+
T Consensus        17 ~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~   48 (136)
T 1lu4_A           17 FDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQ   48 (136)
T ss_dssp             EEGGGGTTSCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             ecHHHhCCCEEEEEEECCcChhHHHHHHHHHH
Confidence            34444445556677889999999999988765

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=92.33  E-value=0.051  Score=41.59  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             cceeeccccChhhHHHHHhHHh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      -.++|++.|||+|.+.|+++-+
T Consensus        18 ~v~~f~~~~C~~C~~~~~~L~~   39 (100)
T 1wjk_A           18 VLTLFTKAPCPLCDEAKEVLQP   39 (100)
T ss_dssp             EEEEEECSSCHHHHHHHHHTST
T ss_pred             EEEEEeCCCCcchHHHHHHHHH
Confidence            4679999999999999999863

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=92.28  E-value=0.073  Score=39.64  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=20.8

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.-.++|.+.|||+|++.+..|-+-
T Consensus        25 ~~~lv~f~~~~C~~C~~~~~~~~~~   49 (120)
T 1mek_A           25 KYLLVEFYAPWCGHCKALAPEYAKA   49 (120)
T ss_dssp             SEEEEEEECSSCSTTSTTHHHHHHH
T ss_pred             CeEEEEEECCCCHHHHHhhHHHHHH
Confidence            4456899999999999999888763

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.27  E-value=0.056  Score=41.51  Aligned_cols=24  Identities=21%  Similarity=0.450  Sum_probs=19.9

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.=.++|.+.|||||++.+..|-+
T Consensus        26 ~~~lv~f~a~wC~~C~~~~~~~~~   49 (133)
T 1x5d_A           26 DVWMVEFYAPWCGHCKNLEPEWAA   49 (133)
T ss_dssp             SEEEEEEECTTCHHHHTHHHHHHH
T ss_pred             CeEEEEEECCCCHHHHhhcHHHHH
Confidence            344688999999999999988765

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=91.43  E-value=0.026  Score=41.10  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=19.6

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.-..+|.+.|||+|+++++.|.+
T Consensus        20 ~~~~v~f~~~~C~~C~~~~~~~~~   43 (106)
T 2yj7_A           20 KPVLVDFWAPWCGPCRMIAPIIEE   43 (106)
Confidence            344678889999999999988865

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=92.13  E-value=0.12  Score=40.16  Aligned_cols=37  Identities=14%  Similarity=0.143  Sum_probs=30.5

Q ss_pred             ChhHHHHHHHhccccceeeccc-----cChhhHHHHHhHHhh
Q 022610          253 SPFALSLAKHLHAIGAKMYGAF-----WCSHCLEQKQVLHQS  289 (294)
Q Consensus       253 ~~~~~~la~~L~~~ga~~yga~-----wCp~C~~Qk~lfg~~  289 (294)
                      ......+.+.+++..++.|+-.     |||+|++-|++|-+.
T Consensus         5 ~~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~   46 (109)
T 3ipz_A            5 PQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNL   46 (109)
T ss_dssp             HHHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHc
Confidence            3445667778888899999985     999999999999764

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=92.05  E-value=0.075  Score=40.83  Aligned_cols=24  Identities=21%  Similarity=0.311  Sum_probs=20.0

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.=..+|.+.|||+|++++..|-+
T Consensus        27 k~~lv~f~a~wC~~C~~~~~~l~~   50 (126)
T 2l57_A           27 IPTIIMFKTDTCPYCVEMQKELSY   50 (126)
T ss_dssp             SCEEEEEECSSCHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCccHHHHHHHHHH
Confidence            344678999999999999988865

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=91.96  E-value=0.13  Score=40.06  Aligned_cols=26  Identities=15%  Similarity=0.356  Sum_probs=21.1

Q ss_pred             ccccceeeccccChhhHHHHHhHHhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++.-.++|.+.|||+|++++..|-+-
T Consensus        38 ~k~vvv~f~a~wC~~C~~~~~~l~~l   63 (124)
T 1xfl_A           38 KTLVVVDFTASWCGPCRFIAPFFADL   63 (124)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHH
Confidence            34556889999999999999988653

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=91.95  E-value=0.076  Score=40.35  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=19.2

Q ss_pred             cceeeccccChhhHHHHHhHHh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      =.++|.+.|||+|++.+..|-+
T Consensus        24 ~lv~f~a~~C~~C~~~~~~~~~   45 (122)
T 3aps_A           24 WVVDFYAPWCGPCQNFAPEFEL   45 (122)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHH
Confidence            3678999999999999998865

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=91.90  E-value=0.14  Score=38.90  Aligned_cols=24  Identities=21%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.=..+|.+.|||+|++.+..|-+
T Consensus        35 ~~~vv~f~~~~C~~C~~~~~~l~~   58 (122)
T 2vlu_A           35 KLVVIDFTASWCGPCRIMAPVFAD   58 (122)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHH
Confidence            344678899999999999988875

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=91.85  E-value=0.076  Score=41.22  Aligned_cols=26  Identities=19%  Similarity=0.437  Sum_probs=20.7

Q ss_pred             ccccceeeccccChhhHHHHHhHHhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++.=.++|.+.|||||++++..+.+-
T Consensus        42 ~k~vlv~F~a~wC~~C~~~~p~l~~~   67 (128)
T 3ul3_B           42 NTVIVLYFFAKWCQACTMQSTEMDKL   67 (128)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHH
Confidence            34446789999999999999888653

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=91.85  E-value=0.066  Score=40.50  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.-..+|.+.|||+|++++..|.+
T Consensus        18 ~~~lv~f~a~wC~~C~~~~~~l~~   41 (112)
T 2voc_A           18 GVVLADFWAPWCGPSKMIAPVLEE   41 (112)
T ss_dssp             SEEEEEEECTTBGGGGGHHHHHHH
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHH
Confidence            344578899999999999988865

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.80  E-value=0.063  Score=42.20  Aligned_cols=21  Identities=14%  Similarity=0.325  Sum_probs=19.1

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|.|.|||+|++.+..|-+
T Consensus        30 lv~f~a~wC~~C~~~~p~~~~   50 (137)
T 2dj0_A           30 IVEFFANWSNDCQSFAPIYAD   50 (137)
T ss_dssp             EEEECCTTCSTTTTTHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHH
Confidence            789999999999999988865

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=91.71  E-value=0.067  Score=40.92  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=21.7

Q ss_pred             ccccceeeccccChhhHHHHHhHHhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++.-..+|.+.|||+|++.+..|.+-
T Consensus        36 ~~~~vv~f~~~~C~~C~~~~~~l~~~   61 (130)
T 1wmj_A           36 GKVVIIDFTASWCGPCRFIAPVFAEY   61 (130)
T ss_dssp             TCBCBEECCSSSCSCSSSSHHHHHHH
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHH
Confidence            45667899999999999999888763

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=91.66  E-value=0.081  Score=41.33  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|.+.|||||++.+..|-+-
T Consensus        55 lv~f~a~wC~~C~~~~~~~~~~   76 (141)
T 3hxs_A           55 IVDFYADWCGPCKMVAPILEEL   76 (141)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHH
Confidence            5788999999999999888653

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=91.51  E-value=0.15  Score=40.84  Aligned_cols=36  Identities=6%  Similarity=0.085  Sum_probs=29.9

Q ss_pred             hhHHHHHHHhccccceeeccc-----cChhhHHHHHhHHhh
Q 022610          254 PFALSLAKHLHAIGAKMYGAF-----WCSHCLEQKQVLHQS  289 (294)
Q Consensus       254 ~~~~~la~~L~~~ga~~yga~-----wCp~C~~Qk~lfg~~  289 (294)
                      +....+.+.+++..++.|+-.     |||+|.+-|++|-+.
T Consensus         4 ~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~   44 (121)
T 3gx8_A            4 EIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQ   44 (121)
T ss_dssp             HHHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHc
Confidence            345567777888889999996     999999999999764

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=91.42  E-value=0.15  Score=39.17  Aligned_cols=24  Identities=25%  Similarity=0.497  Sum_probs=20.1

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.-.++|.+.|||+|++.+..|-+
T Consensus        24 ~~vlv~f~a~wC~~C~~~~~~l~~   47 (118)
T 2f51_A           24 GLVLVDFFATWCGPCQRLGQILPS   47 (118)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHH
Confidence            444688999999999999988865

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=91.28  E-value=0.12  Score=39.76  Aligned_cols=33  Identities=9%  Similarity=0.026  Sum_probs=25.5

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ...++..-.+.-..+|.+.|||+|.++...+-+
T Consensus        21 ~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~   53 (148)
T 2b5x_A           21 VTREQLIGEKPTLIHFWSISCHLCKEAMPQVNE   53 (148)
T ss_dssp             CCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             ccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHH
Confidence            456666555666788899999999998887765

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=91.18  E-value=0.15  Score=39.40  Aligned_cols=27  Identities=11%  Similarity=0.149  Sum_probs=21.7

Q ss_pred             ccccceeeccccChhhHHHHHhHHhhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++.=.++|.|.||+||++.+..|-+-|
T Consensus        33 ~~~vlv~F~a~wC~~C~~~~p~~~~la   59 (127)
T 3h79_A           33 EKDVFVLYYVPWSRHSVAAMRLWDDLS   59 (127)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCccHHHHHHhHHHHHHH
Confidence            344568899999999999999887643

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=91.09  E-value=0.13  Score=40.70  Aligned_cols=26  Identities=27%  Similarity=0.634  Sum_probs=21.6

Q ss_pred             cccceeeccccChhhHHHHHhHHhhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      +.-.++|.|.|||+|.+.+..|.+-+
T Consensus        41 k~vvv~F~a~wC~~C~~~~p~l~~l~   66 (133)
T 3cxg_A           41 SSIVIKFGAVWCKPCNKIKEYFKNQL   66 (133)
T ss_dssp             SEEEEEEECTTCHHHHHTHHHHHGGG
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHH
Confidence            45578999999999999999887643

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=91.03  E-value=0.18  Score=39.66  Aligned_cols=33  Identities=18%  Similarity=0.167  Sum_probs=25.2

Q ss_pred             HHHHHhccccceeeccccChhhHHHHHhHHhhh
Q 022610          258 SLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       258 ~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++.+.+++.=.++|.|.|||+|++.+..|.+-+
T Consensus        25 ~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~l~   57 (135)
T 3emx_A           25 EFRQLLQGDAILAVYSKTCPHCHRDWPQLIQAS   57 (135)
T ss_dssp             HHHHHHTSSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcEEEEEECCcCHhhhHhChhHHHHH
Confidence            444555555568899999999999998887643

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=90.83  E-value=0.2  Score=39.74  Aligned_cols=34  Identities=12%  Similarity=-0.063  Sum_probs=25.7

Q ss_pred             HHHHHHhccc-----cceeeccccChhhHHHHHhHHhhh
Q 022610          257 LSLAKHLHAI-----GAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       257 ~~la~~L~~~-----ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      .++.+.+.+.     =.++|.|.||++|+..+..|.+-+
T Consensus        18 ~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la   56 (135)
T 2dbc_A           18 NQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLA   56 (135)
T ss_dssp             HHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHH
Confidence            3555666543     268899999999999999887644

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=90.78  E-value=0.099  Score=39.57  Aligned_cols=31  Identities=23%  Similarity=0.355  Sum_probs=23.1

Q ss_pred             HHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          258 SLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       258 ~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .+++.-.+.-..+|.+.|||+|.++...+.+
T Consensus        19 ~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~   49 (136)
T 1zzo_A           19 HGESLLGKPAVLWFWAPWCPTCQGEAPVVGQ   49 (136)
T ss_dssp             EGGGGTTSCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             eHHHhCCCeEEEEEEcCCChhHHHHHHHHHH
Confidence            3444444555678889999999999888765

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=90.73  E-value=0.12  Score=40.58  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=19.3

Q ss_pred             cceeeccccChhhHHHHHhHHh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      =.++|.+.|||+|++.+..|.+
T Consensus        41 ~lv~f~a~wC~~C~~~~~~l~~   62 (136)
T 2l5l_A           41 AIVDFYADWCGPCKMVAPILDE   62 (136)
T ss_dssp             EEEEEECTTSHHHHHHHHHHHH
T ss_pred             EEEEEECCcCHHHHHHHHHHHH
Confidence            3688999999999999998865

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=90.69  E-value=0.067  Score=41.66  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=25.0

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|++.-.+.-..+|.+.|||+|.++...+-+
T Consensus        20 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~   52 (144)
T 1o73_A           20 EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAE   52 (144)
T ss_dssp             CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHH
Confidence            445555555666788999999999998877765

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=90.67  E-value=0.15  Score=40.10  Aligned_cols=31  Identities=19%  Similarity=0.180  Sum_probs=22.8

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHHhH
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVL  286 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lf  286 (294)
                      ...|++.-++.-.++|.+.|||+|.+.+..+
T Consensus        23 ~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~   53 (134)
T 2fwh_A           23 NQALVEAKGKPVMLDLYADWCVACKEFEKYT   53 (134)
T ss_dssp             HHHHHHHTTSCEEEEEECTTCHHHHHHHHHT
T ss_pred             HHHHHHhcCCcEEEEEECCCCHHHHHHHHHh
Confidence            4455554466677889999999999976543

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=90.59  E-value=0.25  Score=37.95  Aligned_cols=30  Identities=17%  Similarity=0.351  Sum_probs=22.2

Q ss_pred             HHHHhcc--ccceeeccccChhhHHHHHhHHh
Q 022610          259 LAKHLHA--IGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       259 la~~L~~--~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.+.+++  .-.++|.+.|||+|.+.+..|.+
T Consensus        26 f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~   57 (121)
T 2j23_A           26 FKQVTGGDKVVVIDFWATWCGPCKMIGPVFEK   57 (121)
T ss_dssp             HHHHHSSSSCEEEEEECTTCSTHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEEEECCCCHhHHHHHHHHHH
Confidence            4444433  33578999999999999998865

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=90.27  E-value=0.14  Score=40.61  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             cceeeccccChhhHHHHHhHHh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      -.+.|++.|||.|.+.|+++.+
T Consensus        31 ~vv~y~~~~C~~C~~a~~~L~~   52 (107)
T 2fgx_A           31 KLVVYGREGCHLCEEMIASLRV   52 (107)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCChhHHHHHHHHHH
Confidence            4679999999999999999986

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=90.12  E-value=0.13  Score=40.37  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=19.6

Q ss_pred             ccceeeccccChhhHHHHHhHHh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .=.++|.+.|||+|.+.+..|.+
T Consensus        42 ~vlv~F~a~wC~~C~~~~p~l~~   64 (128)
T 2o8v_B           42 AILVDFWAEWCGPAKMIAPILDE   64 (128)
T ss_dssp             EEEEEEECSSCHHHHHTHHHHHH
T ss_pred             EEEEEEECCCCHHHHHHhHHHHH
Confidence            34578999999999999988865

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=89.98  E-value=0.11  Score=44.92  Aligned_cols=22  Identities=32%  Similarity=0.685  Sum_probs=18.3

Q ss_pred             cccceeeccccChhhHHHHHhH
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVL  286 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lf  286 (294)
                      +.-.+.|-+||||||.+....+
T Consensus       114 ~~~vveFf~~~C~~C~~~~p~~  135 (197)
T 1un2_A          114 APQVLEFFSFFCPHCYQFEEVL  135 (197)
T ss_dssp             CCSEEEEECTTCHHHHHHHHTS
T ss_pred             CCEEEEEECCCChhHHHhCccc
Confidence            4567899999999999988665

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=89.97  E-value=0.11  Score=44.92  Aligned_cols=20  Identities=10%  Similarity=0.426  Sum_probs=16.9

Q ss_pred             eeeccccChhhHHHHHhHHh
Q 022610          269 KMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       269 ~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..|.++|||||++.++.+-+
T Consensus        91 v~F~d~~Cp~C~~~~~~l~~  110 (216)
T 1eej_A           91 TVFTDITCGYCHKLHEQMAD  110 (216)
T ss_dssp             EEEECTTCHHHHHHHTTHHH
T ss_pred             EEEECCCCHHHHHHHHHHHH
Confidence            68999999999998876654

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=89.79  E-value=0.23  Score=41.32  Aligned_cols=37  Identities=16%  Similarity=-0.024  Sum_probs=27.8

Q ss_pred             CChhHHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          252 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       252 s~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +-.++.+.|+.=++.=.+.|.|.||+.|+..+..+-+
T Consensus        32 ~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~   68 (151)
T 3ph9_A           32 TYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQ   68 (151)
T ss_dssp             SHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhc
Confidence            4445666666656666788999999999998876654

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=89.78  E-value=0.11  Score=44.77  Aligned_cols=21  Identities=19%  Similarity=0.366  Sum_probs=17.2

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ...|.++|||||++.++.+.+
T Consensus        90 vv~F~d~~Cp~C~~~~~~l~~  110 (211)
T 1t3b_A           90 VTVFMDITCHYCHLLHQQLKE  110 (211)
T ss_dssp             EEEEECTTCHHHHHHHTTHHH
T ss_pred             EEEEECCCCHhHHHHHHHHHH
Confidence            368999999999998776654

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=89.73  E-value=0.13  Score=40.23  Aligned_cols=33  Identities=21%  Similarity=0.383  Sum_probs=25.0

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..++++.-.+.-..+|.+.|||+|+++...|-+
T Consensus        34 ~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~   66 (156)
T 1kng_A           34 GLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTE   66 (156)
T ss_dssp             CBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             eechHHhCCCEEEEEEEcccCHhHHHHHHHHHH
Confidence            344555446666788999999999999887765

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=89.68  E-value=0.16  Score=38.91  Aligned_cols=24  Identities=13%  Similarity=0.393  Sum_probs=19.1

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.=..+|.+.|||+|.++...+-+
T Consensus        35 k~~ll~f~~~~C~~C~~~~~~l~~   58 (145)
T 3erw_A           35 QKTILHFWTSWCPPCKKELPQFQS   58 (145)
T ss_dssp             SEEEEEEECSSCHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHH
Confidence            344567779999999999887765

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=89.51  E-value=0.15  Score=39.93  Aligned_cols=24  Identities=17%  Similarity=0.599  Sum_probs=20.0

Q ss_pred             ccceeeccccChhhHHHHHhHHhh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .=.++|.+.|||+|.+.+..|.+-
T Consensus        39 ~vvv~F~a~wC~~C~~~~p~l~~l   62 (125)
T 1r26_A           39 LTVAWFTAVWCGPCKTIERPMEKI   62 (125)
T ss_dssp             CEEEEEECTTCHHHHHTHHHHHHH
T ss_pred             EEEEEEECCcCHhHHHHHHHHHHH
Confidence            345789999999999999988763

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=89.37  E-value=0.2  Score=44.16  Aligned_cols=25  Identities=12%  Similarity=0.065  Sum_probs=20.4

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.-.++|-|.|||||.+.+..+-+-
T Consensus       139 ~~~vv~F~a~wC~~C~~~~p~l~~l  163 (243)
T 2hls_A          139 RVHIETIITPSCPYCPYAVLLAHMF  163 (243)
T ss_dssp             CEEEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCcHHHHHHHHHH
Confidence            3446789999999999999988663

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=89.06  E-value=0.19  Score=39.77  Aligned_cols=26  Identities=12%  Similarity=0.156  Sum_probs=20.9

Q ss_pred             ccccceeeccccChhhHHHHHhHHhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++.=.++|.+.|||+|.+.+..|.+-
T Consensus        24 ~~~vlv~F~a~wC~~C~~~~~~l~~l   49 (140)
T 3hz4_A           24 KKPVVVMFYSPACPYCKAMEPYFEEY   49 (140)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCChhHHHHHHHHHHH
Confidence            33446889999999999999988663

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=88.88  E-value=0.2  Score=40.27  Aligned_cols=27  Identities=15%  Similarity=0.378  Sum_probs=21.5

Q ss_pred             ccccceeeccccChhhHHHHHhHHhhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++.=.++|.+.|||+|.+.+..|.+-+
T Consensus        32 ~~~vvv~F~a~wC~~C~~~~p~l~~l~   58 (153)
T 2wz9_A           32 KSLLVVHFWAPWAPQCAQMNEVMAELA   58 (153)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCHhHHHHHHHHHHHH
Confidence            344568899999999999999887643

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=88.78  E-value=0.074  Score=41.84  Aligned_cols=33  Identities=12%  Similarity=0.196  Sum_probs=24.6

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|++.-.+.=..+|.+.|||+|.++...+-+
T Consensus        20 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~   52 (146)
T 1o8x_A           20 EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIE   52 (146)
T ss_dssp             EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHH
Confidence            455555545566788899999999998877754

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=88.61  E-value=0.21  Score=40.16  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=19.5

Q ss_pred             ccceeeccccChhhHHHHHhHHh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .=.+.|.|.||++|++.+..|-+
T Consensus        25 ~vlv~F~a~wC~~C~~~~p~l~~   47 (142)
T 1qgv_A           25 VVVIRFGHDWDPTCMKMDEVLYS   47 (142)
T ss_dssp             EEEEEEECTTSHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCHHHHHHHHHHHH
Confidence            34578999999999999988865

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=88.57  E-value=0.22  Score=39.03  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=19.1

Q ss_pred             cceeeccccChhhHHHHHhHHh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      =.++|.+.|||+|++.+..|.+
T Consensus        53 vvv~f~~~~C~~C~~~~~~l~~   74 (140)
T 1v98_A           53 TLVDFFAPWCGPCRLVSPILEE   74 (140)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHH
Confidence            3678899999999999998875

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=88.53  E-value=0.27  Score=38.39  Aligned_cols=33  Identities=12%  Similarity=0.122  Sum_probs=24.7

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .+.+++.-.+.-..+|.+.|||+|.++...+-+
T Consensus        20 ~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~   52 (153)
T 2l5o_A           20 TVSNADLQGKVTLINFWFPSCPGCVSEMPKIIK   52 (153)
T ss_dssp             EEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHH
T ss_pred             CccHHHhCCCEEEEEEECCCCccHHHHHHHHHH
Confidence            345666555666788889999999998776654

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=88.53  E-value=0.22  Score=39.43  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=23.0

Q ss_pred             HHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..+++.-.+.-..+|.+.|||+|.++...|-+
T Consensus        31 ~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~   62 (164)
T 2h30_A           31 ASVYLKKDKPTLIKFWASWCPLCLSELGQAEK   62 (164)
T ss_dssp             GGGGCCTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             eeHHHhCCCEEEEEEECCCCHHHHHHHHHHHH
Confidence            34444434555688889999999998877754

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=88.25  E-value=0.2  Score=37.54  Aligned_cols=31  Identities=23%  Similarity=0.263  Sum_probs=22.8

Q ss_pred             HHHHhccccceeeccccChhhHHHHHhHHhh
Q 022610          259 LAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       259 la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      |++.-.+.-..+|.+.|||+|.++...+.+-
T Consensus        17 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~   47 (138)
T 4evm_A           17 LSDYKGKKVYLKFWASWCSICLASLPDTDEI   47 (138)
T ss_dssp             GGGGTTSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCEEEEEEEcCcCHHHHHHHHHHHHH
Confidence            4443345556788899999999998877653

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=88.17  E-value=0.2  Score=39.33  Aligned_cols=32  Identities=13%  Similarity=0.241  Sum_probs=23.1

Q ss_pred             HHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..|++.-.+.=..+|.+.|||+|.++...+.+
T Consensus        19 ~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~   50 (151)
T 2f9s_A           19 IELSDLKGKGVFLNFWGTWCEPCKKEFPYMAN   50 (151)
T ss_dssp             EEGGGGTTSEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             EEHHHcCCCEEEEEEECCCCHHHHHHHHHHHH
Confidence            34444444555778889999999998877654

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=88.16  E-value=0.38  Score=38.01  Aligned_cols=26  Identities=15%  Similarity=0.322  Sum_probs=20.8

Q ss_pred             cccceeeccccChhhHHHHHhHHhhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      +.=.++|.+.||+||++.+..|.+-+
T Consensus        56 k~vlv~F~a~wC~~C~~~~p~l~~~~   81 (148)
T 3p2a_A           56 LPMVIDFWAPWCGPCRSFAPIFAETA   81 (148)
T ss_dssp             SCEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHHH
Confidence            34457889999999999998887643

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=88.15  E-value=0.41  Score=39.27  Aligned_cols=37  Identities=14%  Similarity=0.126  Sum_probs=30.8

Q ss_pred             ChhHHHHHHHhccccceeecc-----ccChhhHHHHHhHHhh
Q 022610          253 SPFALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQVLHQS  289 (294)
Q Consensus       253 ~~~~~~la~~L~~~ga~~yga-----~wCp~C~~Qk~lfg~~  289 (294)
                      +.....+.+..++...+.|..     .|||+|.+-|++|-+.
T Consensus        22 ~~~~~~v~~~i~~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~   63 (135)
T 2wci_A           22 STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAAC   63 (135)
T ss_dssp             CHHHHHHHHHHHHCSEEEEESBCSSSBSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccCCEEEEEEecCCCCCCccHHHHHHHHHHc
Confidence            445667777788888999998     8999999999999653

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=88.08  E-value=0.27  Score=39.84  Aligned_cols=27  Identities=15%  Similarity=0.215  Sum_probs=21.9

Q ss_pred             ccccceeeccccChhhHHHHHhHHhhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++.=.+.|.|.||++|.+.+..|-+-+
T Consensus        23 ~k~vlv~F~a~WC~~C~~~~p~l~~l~   49 (149)
T 3gix_A           23 EKVLVLRFGRDEDPVCLQLDDILSKTS   49 (149)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHH
Confidence            455578899999999999998887643

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=87.98  E-value=0.24  Score=39.63  Aligned_cols=23  Identities=30%  Similarity=0.444  Sum_probs=18.2

Q ss_pred             ccceeeccccChhhHHHHHhHHh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .-..+|.+.|||+|.++...+.+
T Consensus        53 ~vll~F~a~~C~~C~~~~~~l~~   75 (168)
T 2b1k_A           53 PVLLNVWATWCPTCRAEHQYLNQ   75 (168)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCHHHHHHHHHHHH
Confidence            34567779999999998877754

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=87.91  E-value=0.32  Score=41.53  Aligned_cols=37  Identities=14%  Similarity=0.046  Sum_probs=28.3

Q ss_pred             CChhHHHHHHHhccccceeeccccChhhHHHHH-hHHh
Q 022610          252 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-VLHQ  288 (294)
Q Consensus       252 s~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~-lfg~  288 (294)
                      -++.+.+.|+.=.+.=.+.++|.||+.|+..+. .|..
T Consensus        27 ~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~   64 (173)
T 3ira_A           27 WGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFED   64 (173)
T ss_dssp             SSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTC
T ss_pred             cCHHHHHHHHHhCCCEEEecccchhHhhccccccccCC
Confidence            346677777776677778899999999999665 6653

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=87.14  E-value=0.46  Score=36.67  Aligned_cols=26  Identities=15%  Similarity=0.540  Sum_probs=20.7

Q ss_pred             ccccceeeccc-------cChhhHHHHHhHHhh
Q 022610          264 HAIGAKMYGAF-------WCSHCLEQKQVLHQS  289 (294)
Q Consensus       264 ~~~ga~~yga~-------wCp~C~~Qk~lfg~~  289 (294)
                      .+.=.++|.|.       |||+|.+.+..|.+-
T Consensus        24 ~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~   56 (123)
T 1wou_A           24 GKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREG   56 (123)
T ss_dssp             TSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHH
Confidence            33446788899       999999999988763

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=87.12  E-value=0.25  Score=38.51  Aligned_cols=32  Identities=16%  Similarity=0.212  Sum_probs=23.3

Q ss_pred             HHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ++|++.-.+.-..+|.+.|||+|.++...+.+
T Consensus        21 ~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~   52 (144)
T 1i5g_A           21 IALPSLAGKTVFFYFSASWCPPSRAFTPQLID   52 (144)
T ss_dssp             EEGGGGTTSEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             ecHHHcCCCEEEEEEECCCCHHHHHHHHHHHH
Confidence            34444434556788899999999998877754

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=86.98  E-value=0.1  Score=41.23  Aligned_cols=32  Identities=19%  Similarity=0.349  Sum_probs=22.8

Q ss_pred             HHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.|++.=.+.=..+|.+.|||+|.++...|.+
T Consensus        17 ~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~   48 (151)
T 3raz_A           17 QSLQSLKAPVRIVNLWATWCGPCRKEMPAMSK   48 (151)
T ss_dssp             ECGGGCCSSEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             ecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHH
Confidence            34444334444677889999999999887765

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=86.59  E-value=0.37  Score=37.92  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=25.1

Q ss_pred             hHHHHHHHhccccceeeccccChhhHHH-HHhHHh
Q 022610          255 FALSLAKHLHAIGAKMYGAFWCSHCLEQ-KQVLHQ  288 (294)
Q Consensus       255 ~~~~la~~L~~~ga~~yga~wCp~C~~Q-k~lfg~  288 (294)
                      ....|++.-.+.=...|.+.|||+|.+| ...+.+
T Consensus        21 ~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~   55 (160)
T 3lor_A           21 EGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQK   55 (160)
T ss_dssp             CCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHH
T ss_pred             CccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHH
Confidence            4556777667777788999999999986 555443

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=85.94  E-value=0.38  Score=40.46  Aligned_cols=21  Identities=14%  Similarity=0.278  Sum_probs=18.5

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|.|.|||||.+.+..|-+
T Consensus       138 ~v~F~a~wC~~C~~~~p~~~~  158 (226)
T 1a8l_A          138 ILVFVTPTCPYCPLAVRMAHK  158 (226)
T ss_dssp             EEEEECSSCTTHHHHHHHHHH
T ss_pred             EEEEeCCCCCccHHHHHHHHH
Confidence            678999999999999988865

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=85.75  E-value=0.37  Score=41.63  Aligned_cols=27  Identities=22%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             hccccceeeccccChhhHHHHHhHHhh
Q 022610          263 LHAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       263 L~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      =++.=.++|.|.||+||++.+..|-+-
T Consensus        29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l   55 (244)
T 3q6o_A           29 SRSAWAVEFFASWCGHCIAFAPTWXAL   55 (244)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEECCcCHHHHHHHHHHHHH
Confidence            356668899999999999998888653

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=85.55  E-value=0.33  Score=37.33  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=19.9

Q ss_pred             ccccceeeccccChhhHHHHHhHHh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .+.=..+|.+.|||+|.++...+.+
T Consensus        33 gk~vll~F~~~~C~~C~~~~~~l~~   57 (148)
T 3fkf_A           33 NRYLLLNFWASWCDPQPEANAELKR   57 (148)
T ss_dssp             TSEEEEEEECGGGCCCHHHHHHHHH
T ss_pred             CcEEEEEEECCCCHHHHHHhHHHHH
Confidence            4455677889999999999887765

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=85.60  E-value=0.16  Score=39.12  Aligned_cols=33  Identities=21%  Similarity=0.487  Sum_probs=23.1

Q ss_pred             HHHHHHHhc-c-ccceeeccccChhhHHHHHhHHh
Q 022610          256 ALSLAKHLH-A-IGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       256 ~~~la~~L~-~-~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .+.|++.++ + .=..+|.+.|||+|.++...+-+
T Consensus        16 ~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~   50 (143)
T 2lus_A           16 EVNANEALKDKDIIGFYFSAHWCPPCRGFTPILAD   50 (143)
Confidence            455666333 3 45678899999999988776644

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=85.14  E-value=0.36  Score=38.04  Aligned_cols=32  Identities=22%  Similarity=0.251  Sum_probs=23.6

Q ss_pred             HHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..+++.-.+.=..+|.+.|||+|.++...|.+
T Consensus        27 ~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~   58 (165)
T 3or5_A           27 FSSASLKGKAYIVNFFATWCPPCRSEIPDMVQ   58 (165)
T ss_dssp             EEGGGGTTCEEEEEEECTTSHHHHHHHHHHHH
T ss_pred             echhHcCCCEEEEEEEcCcCHHHHHHHHHHHH
Confidence            44555444555677889999999999887765

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=85.05  E-value=0.73  Score=38.88  Aligned_cols=26  Identities=15%  Similarity=0.184  Sum_probs=21.2

Q ss_pred             ccccceeeccccChhhHHHHHhHHhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++.=.++|.+.|||+|++.+..|-+-
T Consensus       114 ~~~vlv~F~a~wC~~C~~~~p~~~~l  139 (210)
T 3apq_A          114 GELWFVNFYSPGCSHCHDLAPTWREF  139 (210)
T ss_dssp             SCCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCChhHHHHHHHHHHH
Confidence            44556899999999999999888653

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=84.93  E-value=0.43  Score=38.02  Aligned_cols=25  Identities=20%  Similarity=0.529  Sum_probs=19.9

Q ss_pred             ccccceeeccccChhhHHHHHhHHh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .+.=..+|.+.|||+|.++...+.+
T Consensus        37 gk~~lv~F~~~~C~~C~~~~~~l~~   61 (165)
T 3ha9_A           37 GDVVILWFMAAWCPSCVYMADLLDR   61 (165)
T ss_dssp             SSEEEEEEECTTCTTHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCcchhhhHHHHHH
Confidence            3455677889999999999877765

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=84.88  E-value=0.66  Score=39.70  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=20.1

Q ss_pred             ccceeeccccChhhHHHHHhHHhhh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      .=.++|.|.||++|.+.+..|.+-+
T Consensus        32 ~vvv~F~a~wC~~C~~~~p~l~~l~   56 (222)
T 3dxb_A           32 AILVDFWAEWCGPCKMIAPILDEIA   56 (222)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCcCHHHHHHHHHHHHHH
Confidence            3457788999999999998887643

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=84.76  E-value=0.45  Score=40.30  Aligned_cols=23  Identities=9%  Similarity=0.114  Sum_probs=19.0

Q ss_pred             ceeeccccChhhHHHHHhHHhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      .++|.+.|||||.+.+..|-+-+
T Consensus       140 ~v~F~a~wC~~C~~~~~~~~~~~  162 (229)
T 2ywm_A          140 IWVFVTTSCGYCPSAAVMAWDFA  162 (229)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHH
T ss_pred             EEEEECCCCcchHHHHHHHHHHH
Confidence            45699999999999998887643

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=84.70  E-value=0.44  Score=38.72  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=23.9

Q ss_pred             HHHHHHhcc--ccceeeccccChhhHHHHHhHHh
Q 022610          257 LSLAKHLHA--IGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       257 ~~la~~L~~--~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++.+.+++  .=.++|.+.|||+|.+.+..|-+
T Consensus        55 ~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~   88 (155)
T 2ppt_A           55 AILARAERDDLPLLVDFWAPWCGPCRQMAPQFQA   88 (155)
T ss_dssp             HHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHH
Confidence            456666632  23578889999999999988865

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=84.11  E-value=0.6  Score=39.21  Aligned_cols=25  Identities=20%  Similarity=0.496  Sum_probs=20.3

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.=.+.|.|.|||.|......+-+=
T Consensus        55 k~vvv~F~A~WC~pC~~~~P~l~~l   79 (167)
T 1z6n_A           55 RYRLLVAGEMWCPDCQINLAALDFA   79 (167)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCChhHHHHHHHHHHH
Confidence            3446789999999999998887653

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=84.03  E-value=0.18  Score=39.85  Aligned_cols=32  Identities=16%  Similarity=0.194  Sum_probs=22.2

Q ss_pred             HHHHHHhccccceeeccccChhhHHH-HHhHHh
Q 022610          257 LSLAKHLHAIGAKMYGAFWCSHCLEQ-KQVLHQ  288 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga~wCp~C~~Q-k~lfg~  288 (294)
                      .+|++.-.+.=...|.+.|||+|.++ ...+.+
T Consensus        21 ~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~   53 (158)
T 3eyt_A           21 LTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQK   53 (158)
T ss_dssp             CCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHH
T ss_pred             cCHHHhCCCEEEEEEECCcCcchhhhhhHHHHH
Confidence            44555445566677889999999997 555544

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=83.74  E-value=0.45  Score=37.06  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=24.0

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .+.|++.-.+.=..+|.+.|||+|.++...+-+
T Consensus        20 ~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~   52 (152)
T 3gl3_A           20 VVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQ   52 (152)
T ss_dssp             EEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHH
T ss_pred             eEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHH
Confidence            445555545556677889999999998877654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=83.62  E-value=0.68  Score=45.09  Aligned_cols=29  Identities=17%  Similarity=0.293  Sum_probs=23.6

Q ss_pred             ccccceeeccccChhhHHHHHhHHhhhhc
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQSLTY  292 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~a~~  292 (294)
                      .....+.|.+.|||+|...++.|-+-+..
T Consensus       117 ~~~~i~~f~a~~C~~C~~~~~~l~~~a~~  145 (521)
T 1hyu_A          117 GDFEFETYYSLSCHNCPDVVQALNLMAVL  145 (521)
T ss_dssp             SCEEEEEEECTTCSSHHHHHHHHHHHHHH
T ss_pred             CCcceEEEECCCCcCcHHHHHHHHHHHhH
Confidence            34567999999999999999998875543

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=83.62  E-value=0.24  Score=39.31  Aligned_cols=33  Identities=15%  Similarity=0.420  Sum_probs=24.3

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..+|++.-.+.=..+|.+.|||+|.++...+.+
T Consensus        25 ~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~   57 (159)
T 2ls5_A           25 QVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEK   57 (159)
Confidence            456666545555677889999999988777665

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=82.63  E-value=0.35  Score=37.23  Aligned_cols=32  Identities=16%  Similarity=0.186  Sum_probs=22.6

Q ss_pred             HHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..|++.-.+.=..+|.+.|||+|.++...+-+
T Consensus        24 ~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~   55 (148)
T 3hcz_A           24 RYLYDVQAKYTILFFWDSQCGHCQQETPKLYD   55 (148)
T ss_dssp             CCGGGCCCSEEEEEEECGGGCTTCSHHHHHHH
T ss_pred             EEhHHcCCCEEEEEEECCCCccHHHHHHHHHH
Confidence            44444434455677889999999988876655

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=82.53  E-value=0.55  Score=37.16  Aligned_cols=32  Identities=13%  Similarity=0.099  Sum_probs=21.1

Q ss_pred             HHHHHHhcc-ccceee-ccccChhhHHHHHhHHh
Q 022610          257 LSLAKHLHA-IGAKMY-GAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       257 ~~la~~L~~-~ga~~y-ga~wCp~C~~Qk~lfg~  288 (294)
                      ..|++.-.+ .=...| ++.|||+|.++...+.+
T Consensus        28 ~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~   61 (160)
T 1xvw_A           28 VTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRD   61 (160)
T ss_dssp             EEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHH
T ss_pred             EeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHH
Confidence            445554343 334444 69999999998877765

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=82.44  E-value=0.64  Score=35.82  Aligned_cols=30  Identities=10%  Similarity=0.195  Sum_probs=20.5

Q ss_pred             HHHHHHhccccceeeccccChhhHHHHHhH
Q 022610          257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVL  286 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lf  286 (294)
                      ..|++.-.+.=..+|.+.|||+|.++...+
T Consensus        20 ~~l~~~~gk~vll~F~a~~C~~C~~~~~~l   49 (142)
T 3ewl_A           20 SRMSRLKAQYTMLFFYDPDCSNCRKFEKLF   49 (142)
T ss_dssp             EEGGGCCCSEEEEEECCSSCHHHHHHHHHH
T ss_pred             EEhhhcCCCEEEEEEECCCCccHHHHHHHH
Confidence            344444345556778899999999975443

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=82.39  E-value=0.54  Score=38.30  Aligned_cols=33  Identities=15%  Similarity=0.324  Sum_probs=24.2

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ...|++.-.+.=..+|.+.|||+|.++...|-+
T Consensus        51 ~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~   83 (183)
T 3lwa_A           51 QINLSDFENQVVILNAWGQWCAPCRSESDDLQI   83 (183)
T ss_dssp             EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             EecHHHhCCCEEEEEEECCcCHhHHHHHHHHHH
Confidence            445666545555677889999999998877655

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=82.36  E-value=0.56  Score=34.35  Aligned_cols=17  Identities=24%  Similarity=0.460  Sum_probs=14.4

Q ss_pred             cccChhhHHHHHhHHhh
Q 022610          273 AFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       273 a~wCp~C~~Qk~lfg~~  289 (294)
                      .+|||+|++-|+++.+.
T Consensus        11 ~~~Cp~C~~ak~~L~~~   27 (87)
T 1aba_A           11 IHKCGPCDNAKRLLTVK   27 (87)
T ss_dssp             TSCCHHHHHHHHHHHHT
T ss_pred             CCcCccHHHHHHHHHHc
Confidence            35999999999999763

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=82.23  E-value=0.61  Score=40.98  Aligned_cols=20  Identities=15%  Similarity=0.335  Sum_probs=16.0

Q ss_pred             ceeeccccChhhHHHHHhHH
Q 022610          268 AKMYGAFWCSHCLEQKQVLH  287 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg  287 (294)
                      ...|.++|||||++..+.+-
T Consensus       101 v~~F~D~~Cp~C~~~~~~l~  120 (241)
T 1v58_A          101 VYVFADPFCPYCKQFWQQAR  120 (241)
T ss_dssp             EEEEECTTCHHHHHHHHHHH
T ss_pred             EEEEECCCChhHHHHHHHHH
Confidence            36799999999999866543

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=81.63  E-value=0.72  Score=35.95  Aligned_cols=32  Identities=19%  Similarity=0.393  Sum_probs=22.5

Q ss_pred             HHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ..|++.-.+.=..+|.+.|||+|.++...+-+
T Consensus        21 ~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~   52 (154)
T 3kcm_A           21 VKLSDLKGQVVIVNFWATWCPPCREEIPSMMR   52 (154)
T ss_dssp             EEGGGGTTSEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             EehhhcCCCEEEEEEECCCCHHHHHHHHHHHH
Confidence            34444434455567779999999998877755

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=81.10  E-value=0.36  Score=37.65  Aligned_cols=31  Identities=26%  Similarity=0.273  Sum_probs=22.4

Q ss_pred             HHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          258 SLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       258 ~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +|++.-.+.=..+|.+.|||+|.++...+-+
T Consensus        24 ~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~   54 (152)
T 2lja_A           24 SLADLKGKYIYIDVWATWCGPCRGELPALKE   54 (152)
T ss_dssp             ESTTTTTSEEEEEECCSSCCGGGGTHHHHHH
T ss_pred             eHHHcCCCEEEEEEECCcCHhHHHHhHHHHH
Confidence            4444434555778889999999988877654

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=81.06  E-value=0.76  Score=38.71  Aligned_cols=27  Identities=19%  Similarity=0.345  Sum_probs=21.6

Q ss_pred             ccccceeeccccChhhHHHHHhHHhhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++.=.++|.|.||+||.+.+..|-+-+
T Consensus        32 ~~~v~v~F~a~wC~~C~~~~p~~~~~~   58 (241)
T 3idv_A           32 KDTVLLEFYAPWCGHCKQFAPEYEKIA   58 (241)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHHH
Confidence            455678899999999999988776643

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=80.99  E-value=0.81  Score=35.50  Aligned_cols=31  Identities=16%  Similarity=0.150  Sum_probs=20.9

Q ss_pred             HHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          258 SLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       258 ~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .|++.-.+.-..+|-|.|||+|.++..-+-+
T Consensus        25 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~   55 (142)
T 3eur_A           25 TLYQFPAEYTLLFINNPGCHACAEMIEGLKA   55 (142)
T ss_dssp             ETTTCCCSEEEEEECCSSSHHHHHHHHHHHH
T ss_pred             eHHHcCCCEEEEEEECCCCccHHHHHHHHhh
Confidence            3444334455567779999999888666554

>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*

Probab=80.83  E-value=4.7  Score=34.37  Aligned_cols=61  Identities=15%  Similarity=0.116  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHhH-hcCCCCCCCCC------------------C-CCccccccccchhccCCchhHHHHHHHHHHH
Q 022610           68 GIGGVGFLETTYLSYLK-LTNSDAFCPIG------------------G-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVA  127 (294)
Q Consensus        68 ~La~iGll~S~YLt~~k-l~~~~~~C~i~------------------~-~sC~~VL~S~yA~vfGiPnsllGllaY~~v~  127 (294)
                      ..+.+|+..+.|=+..+ .++....|+..                  + .+|+++-    =++||++.+.+-+++|.+++
T Consensus        79 ~~a~~G~~iA~~H~~lq~~p~~~~~C~~~~~~~~~~pl~~~l~~~~~~~g~C~~~~----w~~lGlsmp~wsli~F~~~~  154 (176)
T 2zuq_A           79 YSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWVPQVFVASGDCAERQ----WDFLGLEMPQWLLGIFIAYL  154 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSSCCCCCCC-----CCSSTTCSTTTCCCCCCCSCC----CCSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCchhcccCCCHHHHHHHHhcCCCCCcccc----HHHcCCcHHHHHHHHHHHHH
Confidence            34568988888866655 44334689631                  3 6788763    24799999999999998888


Q ss_pred             HHHHH
Q 022610          128 VLGLL  132 (294)
Q Consensus       128 ~Lal~  132 (294)
                      ++++.
T Consensus       155 ~~~~~  159 (176)
T 2zuq_A          155 IVAVL  159 (176)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            77765

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=80.74  E-value=1.1  Score=38.49  Aligned_cols=25  Identities=24%  Similarity=0.493  Sum_probs=21.4

Q ss_pred             cccceeeccccChhhHHHHHhHHhh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +...++|+..|||+|++-|+++.+.
T Consensus       169 ~~~i~ly~~~~Cp~C~~a~~~L~~~  193 (241)
T 1nm3_A          169 QESISIFTKPGCPFCAKAKQLLHDK  193 (241)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCChHHHHHHHHHHHc
Confidence            4456899999999999999999763

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=80.72  E-value=0.61  Score=36.68  Aligned_cols=32  Identities=19%  Similarity=0.151  Sum_probs=22.4

Q ss_pred             HHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.|++.-.+.-..+|.+.|||+|.++...+-+
T Consensus        22 ~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~   53 (152)
T 2lrn_A           22 VSLNDFKGKYVLVDFWFAGCSWCRKETPYLLK   53 (152)
T ss_dssp             EESGGGTTSEEEEEEECTTCTTHHHHHHHHHH
T ss_pred             EeHHHcCCCEEEEEEECCCChhHHHHHHHHHH
Confidence            34444434555678889999999998776654

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=80.69  E-value=1  Score=40.80  Aligned_cols=33  Identities=24%  Similarity=0.554  Sum_probs=23.9

Q ss_pred             HHHHHhcccc---ceeeccccChhhHHHHHhHHhhh
Q 022610          258 SLAKHLHAIG---AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       258 ~la~~L~~~g---a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      .+-+.+.+.+   .++|.|.||+||++.+..|-+-+
T Consensus        26 ~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la   61 (298)
T 3ed3_A           26 SFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAA   61 (298)
T ss_dssp             HHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHH
Confidence            4445553333   67899999999999998887644

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=80.60  E-value=0.81  Score=35.72  Aligned_cols=24  Identities=25%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             cccceeeccccChhhHHHHHhHHh
Q 022610          265 AIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       265 ~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +.=..+|.+.|||+|.++...+.+
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~   54 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHR   54 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHH
T ss_pred             CeEEEEEEcccChhHHHHHHHHHH
Confidence            555677889999999999887765

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=80.45  E-value=0.31  Score=39.71  Aligned_cols=33  Identities=15%  Similarity=0.255  Sum_probs=23.5

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|++.-.+.=..+|.+.|||+|.++...+-+
T Consensus        40 ~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~   72 (165)
T 3s9f_A           40 TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVE   72 (165)
T ss_dssp             EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             cccHHHcCCCEEEEEEECCcChhHHHHHHHHHH
Confidence            344555445555677889999999998876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	96.23
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	95.75
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	95.4
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	94.94
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	94.82
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	94.8
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	94.61
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	93.81
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	93.81
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	93.72
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	93.67
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	93.44
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	93.43
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	93.13
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	92.86
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	92.52
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	92.17
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	92.15
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	91.94
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	91.69
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	91.31
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	91.09
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	90.93
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	90.87
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	90.46
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	90.32
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	90.04
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	89.58
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	88.88
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	88.54
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	88.49
d1wjka_	100	Thioredoxin-like structure containing protein C330	88.26
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	88.24
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	87.75
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	87.38
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	87.28
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	85.7
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	84.62
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	84.01
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	83.45
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	80.08

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.23  E-value=0.0005  Score=49.26  Aligned_cols=28  Identities=18%  Similarity=0.529  Sum_probs=23.6

Q ss_pred             hccccceeeccccChhhHHHHHhHHhhh
Q 022610          263 LHAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       263 L~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      |+++..++|.|.|||||...+..|.+-+
T Consensus         1 m~kv~v~~F~a~wC~~C~~~~p~~~~~~   28 (85)
T d1fo5a_           1 MSKVKIELFTSPMCPHCPAAKRVVEEVA   28 (85)
T ss_dssp             CCCEEEEEEECCCSSCCCTHHHHHHHHH
T ss_pred             CCceEEEEEECCCCcChHhhhhhccccc
Confidence            4677789999999999999999887643

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.75  E-value=0.0022  Score=47.44  Aligned_cols=35  Identities=9%  Similarity=0.118  Sum_probs=24.5

Q ss_pred             HHHHHHHhccc-cceeeccccChhhHHHHHhHHhhh
Q 022610          256 ALSLAKHLHAI-GAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       256 ~~~la~~L~~~-ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ..+.++.+.+. -..+|.+.|||||.+++..|-+-|
T Consensus         6 ~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la   41 (107)
T d1a8la2           6 TKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFA   41 (107)
T ss_dssp             HHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhh
Confidence            33444444443 345699999999999999987644

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.40  E-value=0.0051  Score=45.45  Aligned_cols=27  Identities=19%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             ccceeeccccChhhHHHHHhHHhhhhc
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQSLTY  292 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~~a~~  292 (294)
                      .-.++|.+.|||||.+.+..|-+=|..
T Consensus        17 ~~i~~F~s~~C~~C~~~~p~~~~~a~~   43 (96)
T d1hyua4          17 FEFETYYSLSCHNCPDVVQALNLMAVL   43 (96)
T ss_dssp             EEEEEEECTTCSSHHHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCcchHHHHHHHHHHHHh
Confidence            456789999999999999999765443

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.94  E-value=0.0035  Score=45.04  Aligned_cols=22  Identities=14%  Similarity=0.362  Sum_probs=19.2

Q ss_pred             cceeeccccChhhHHHHHhHHh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      -..+|.|.|||||++.+..|.+
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~   25 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDE   25 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhh
Confidence            3568999999999999998876

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.82  E-value=0.0089  Score=45.09  Aligned_cols=30  Identities=13%  Similarity=0.308  Sum_probs=26.2

Q ss_pred             HHHHhccccceeeccccChhhHHHHHhHHh
Q 022610          259 LAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       259 la~~L~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      +-+.+++...++|+..|||+|.+-|++|-+
T Consensus         5 v~~~i~~~~Vviysk~~Cp~C~~ak~ll~~   34 (105)
T d1ktea_           5 VNSKIQPGKVVVFIKPTCPFCRKTQELLSQ   34 (105)
T ss_dssp             HHHHCCTTCEEEEECSSCHHHHHHHHHHHH
T ss_pred             HHHHhccCCEEEEECCCCchHHHHHHHHHH
Confidence            446677888999999999999999999965

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.80  E-value=0.0059  Score=46.04  Aligned_cols=25  Identities=16%  Similarity=0.227  Sum_probs=21.5

Q ss_pred             ccccceeeccccChhhHHHHHhHHh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      ++...+++++.|||||++.+..|-+
T Consensus        26 ~~~~~v~f~~~~C~~C~~~~p~l~~   50 (115)
T d1zmaa1          26 KETATFFIGRKTCPYCRKFAGTLSG   50 (115)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHH
Confidence            5557899999999999999988855

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.014  Score=44.72  Aligned_cols=41  Identities=15%  Similarity=0.087  Sum_probs=28.9

Q ss_pred             cccCCCChhHHHHHHHhccccceeeccccChhhHHHHHhHH
Q 022610          247 EITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLH  287 (294)
Q Consensus       247 ~i~~~s~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg  287 (294)
                      .|.=.+=.++++.|++=++.=.++++|.||++|+..++.+-
T Consensus         8 ~i~w~~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~   48 (135)
T d1sena_           8 HIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFA   48 (135)
T ss_dssp             TSCBCCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHH
T ss_pred             ceeeeEHHHHHHHHHHcCCcEEEEEEecCCCCceecchhhh
Confidence            34444434556666665666678899999999999988654

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=93.81  E-value=0.015  Score=41.54  Aligned_cols=23  Identities=22%  Similarity=0.457  Sum_probs=20.6

Q ss_pred             cceeeccccChhhHHHHHhHHhh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      +.++|+..|||+|.+-|+++-+.
T Consensus         2 ~I~iys~~~Cp~C~~ak~~L~~~   24 (82)
T d1fova_           2 NVEIYTKETCPYCHRAKALLSSK   24 (82)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHH
T ss_pred             cEEEEeCCCCHhHHHHHHHHHHc
Confidence            46899999999999999999764

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.81  E-value=0.02  Score=42.65  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=19.4

Q ss_pred             ceeeccccChhhHHHHHhHHhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      .++|.|.||++|++.+..|-+-+
T Consensus        29 lv~f~a~wC~~C~~~~p~~~~l~   51 (111)
T d1xwaa_          29 VLDFFATWCGPCKMISPKLVELS   51 (111)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHH
T ss_pred             EEEEECCcccCccccchhHHHHh
Confidence            45699999999999999987643

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=93.72  E-value=0.015  Score=40.66  Aligned_cols=22  Identities=23%  Similarity=0.526  Sum_probs=19.8

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .+.|+..|||+|++.|++|-+.
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~   24 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA   24 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT
T ss_pred             EEEEeCCCChhHHHHHHHHHHc
Confidence            5789999999999999999764

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.015  Score=41.05  Aligned_cols=22  Identities=18%  Similarity=0.447  Sum_probs=20.0

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .+.|+..|||+|++.|++|.+.
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~   24 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR   24 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCccHHHHHHHHHhc
Confidence            5799999999999999999764

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.019  Score=42.28  Aligned_cols=24  Identities=21%  Similarity=0.415  Sum_probs=19.5

Q ss_pred             ceeeccccChhhHHHHHhHHhhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSLT  291 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a~  291 (294)
                      .++|.|.||+||.+.+..|-+-|.
T Consensus        24 ~v~F~a~wC~~C~~~~~~~~~~a~   47 (108)
T d2trxa_          24 LVDFWAEWCGPCKMIAPILDEIAD   47 (108)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCccccCcHHHHHHH
Confidence            467889999999998888876543

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.026  Score=41.59  Aligned_cols=32  Identities=28%  Similarity=0.591  Sum_probs=24.0

Q ss_pred             HHHHHhcccc----ceeeccccChhhHHHHHhHHhh
Q 022610          258 SLAKHLHAIG----AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       258 ~la~~L~~~g----a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ++-+.|++.|    .++|.|.||++|...+..|-+-
T Consensus        10 ~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l   45 (105)
T d2ifqa1          10 AFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSL   45 (105)
T ss_dssp             HHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhh
Confidence            3445555443    5789999999999999988763

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=93.13  E-value=0.021  Score=42.06  Aligned_cols=23  Identities=17%  Similarity=0.475  Sum_probs=19.3

Q ss_pred             ceeeccccChhhHHHHHhHHhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      .++|.|.||+||.+.+..|.+-+
T Consensus        24 lv~f~a~wC~~C~~~~~~~~~~~   46 (108)
T d1thxa_          24 LVYFWASWCGPCQLMSPLINLAA   46 (108)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCccccchHHHHHH
Confidence            46788999999999999997643

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=92.86  E-value=0.024  Score=40.81  Aligned_cols=22  Identities=18%  Similarity=0.523  Sum_probs=19.9

Q ss_pred             cceeeccccChhhHHHHHhHHh
Q 022610          267 GAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       267 ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .+++|+-.+||+|.+-|+||-+
T Consensus         2 kvviysk~~Cp~C~~aK~ll~~   23 (85)
T d1egoa_           2 QTVIFGRSGCPYCVRAKDLAEK   23 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHH
T ss_pred             EEEEEeCCCCHhHHHHHHHHHH
Confidence            3679999999999999999976

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.52  E-value=0.025  Score=42.78  Aligned_cols=33  Identities=12%  Similarity=0.352  Sum_probs=24.9

Q ss_pred             HHHHHhcccc--ceeeccccChhhHHHHHhHHhhh
Q 022610          258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       258 ~la~~L~~~g--a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++.+.+++..  .++|.|.||++|...+..|-+-+
T Consensus        18 ~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~   52 (113)
T d1r26a_          18 QFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIA   52 (113)
T ss_dssp             HHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHH
T ss_pred             HHHHHHcCCCeEEEEEECCCCccchhhceeccccc
Confidence            3445665544  46799999999999999987744

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=92.17  E-value=0.054  Score=40.36  Aligned_cols=23  Identities=17%  Similarity=0.459  Sum_probs=19.3

Q ss_pred             ceeeccccChhhHHHHHhHHhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ..+|.|.||++|...+..|-+-+
T Consensus        30 vv~F~a~wC~~C~~~~p~~~~~~   52 (113)
T d1ti3a_          30 VVDFTASWCPPCKMIAPIFAELA   52 (113)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCccccchhhhhhhhhhh
Confidence            46688999999999999887643

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=92.15  E-value=0.033  Score=40.60  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=18.8

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|.|.||+||.+.+..|-+-
T Consensus        21 lv~F~a~wC~~C~~~~~~~~~l   42 (104)
T d1fb6a_          21 MVDFWAPWCGPCKLIAPVIDEL   42 (104)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEEcCccCCccccCchhHHH
Confidence            4678899999999999988763

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=91.94  E-value=0.038  Score=40.56  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=18.9

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|.|.||+||+..+..+.+-
T Consensus        23 lv~F~a~wC~~C~~~~p~~~~~   44 (107)
T d1dbya_          23 LVDFWAPWCGPCRIIAPVVDEI   44 (107)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCccccChHHHHH
Confidence            4689999999999999888764

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=91.69  E-value=0.04  Score=41.23  Aligned_cols=23  Identities=17%  Similarity=0.429  Sum_probs=19.8

Q ss_pred             ceeeccccChhhHHHHHhHHhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      .++|.|.||++|+..+..|.+-+
T Consensus        28 vv~f~a~wC~~C~~~~p~~~~l~   50 (112)
T d1ep7a_          28 VVDFTATWCGPCKMIAPLFETLS   50 (112)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCcCCCcccchhhhhhh
Confidence            68899999999999999886643

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=91.31  E-value=0.045  Score=39.97  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.3

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|.|.||++|++.+..|.+-
T Consensus        21 vv~F~a~wC~~C~~~~~~~~~l   42 (105)
T d1nw2a_          21 LVDFWAAWCGPCRMMAPVLEEF   42 (105)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCcccccchhhhh
Confidence            5778899999999999998874

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.047  Score=43.06  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             ceeeccccChhhHHHHHhHHhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      .+.|+|.||++|.+.+..|-+-|
T Consensus        26 vv~F~a~wC~~C~~~~p~l~~la   48 (137)
T d1qgva_          26 VIRFGHDWDPTCMKMDEVLYSIA   48 (137)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCccchhcChHHHHHH
Confidence            46799999999999999997643

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=90.93  E-value=0.058  Score=37.53  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=20.9

Q ss_pred             ccceeeccccChhhHHHHHhHHhh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      ...++|+-.+||+|++-|+++-+.
T Consensus         5 ~~I~iYs~~~C~~C~~ak~lL~~~   28 (74)
T d1nm3a1           5 ESISIFTKPGCPFCAKAKQLLHDK   28 (74)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHHc
Confidence            347899999999999999999753

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.87  E-value=0.084  Score=39.27  Aligned_cols=24  Identities=13%  Similarity=0.229  Sum_probs=20.2

Q ss_pred             ceeeccccChhhHHHHHhHHhhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSLT  291 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a~  291 (294)
                      .++|.|.||++|...+..|.+-|.
T Consensus        25 vv~F~a~wC~~Ck~~~p~~~~la~   48 (107)
T d1gh2a_          25 VVKFTMRGCGPCLRIAPAFSSMSN   48 (107)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCccccchhhhcccc
Confidence            567999999999999999976543

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.46  E-value=0.052  Score=41.33  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=23.2

Q ss_pred             HHHHHhccccceeeccccChhhHHHHHhHHhhh
Q 022610          258 SLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       258 ~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      +|+++-.+.=...|-|.|||+|+++...+-+-+
T Consensus        18 ~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~   50 (134)
T d1lu4a_          18 DGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVA   50 (134)
T ss_dssp             EGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             cHHHhCCCEEEEEEeecccCCceecchhHHHHh
Confidence            344443445556777999999999988886543

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.32  E-value=0.099  Score=38.98  Aligned_cols=21  Identities=19%  Similarity=0.463  Sum_probs=18.3

Q ss_pred             ceeeccccChhhHHHHHhHHh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .++|.|.||++|++.+..|-+
T Consensus        32 lv~F~a~wC~~C~~~~p~~~~   52 (114)
T d1xfla_          32 VVDFTASWCGPCRFIAPFFAD   52 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCccccccchhh
Confidence            567899999999999998865

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=90.04  E-value=0.081  Score=38.99  Aligned_cols=29  Identities=21%  Similarity=0.220  Sum_probs=19.5

Q ss_pred             HHHHHHHhccccceeeccccChhhHHHHH
Q 022610          256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQ  284 (294)
Q Consensus       256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~  284 (294)
                      ..+|++.=.+.=.++|+|.||++|+..+.
T Consensus        14 ~~~l~~~~gK~vlv~F~a~wC~~C~~~~~   42 (117)
T d2fwha1          14 NQALVEAKGKPVMLDLYADWCVACKEFEK   42 (117)
T ss_dssp             HHHHHHHTTSCEEEEEECTTCHHHHHHHH
T ss_pred             HHHHHHcCCCeEEEEEecccCCcccccch
Confidence            34455542334457888999999998654

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.58  E-value=0.082  Score=39.61  Aligned_cols=23  Identities=22%  Similarity=0.482  Sum_probs=19.2

Q ss_pred             ceeeccccChhhHHHHHhHHhhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      .++|.+.||+||++.+..|-+-+
T Consensus        31 lV~fya~wC~~C~~~~~~~~~la   53 (119)
T d2b5ea4          31 LAEFFAPWCGHCKNMAPEYVKAA   53 (119)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHH
T ss_pred             EEEEECCccCcccccchhhhhhh
Confidence            47888999999999998886643

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=88.88  E-value=0.12  Score=38.51  Aligned_cols=22  Identities=14%  Similarity=0.282  Sum_probs=18.9

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|.+.||+||+..+..|-+=
T Consensus        29 vv~f~a~wC~~C~~~~p~~~~l   50 (112)
T d1f9ma_          29 VLDMFTQWCGPCKAMAPKYEKL   50 (112)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCcchHHHHHHHhhh
Confidence            5778999999999999888763

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.54  E-value=0.19  Score=38.04  Aligned_cols=18  Identities=28%  Similarity=0.944  Sum_probs=14.6

Q ss_pred             cccChhhHHHHHhHHhhh
Q 022610          273 AFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       273 a~wCp~C~~Qk~lfg~~a  290 (294)
                      +.|||||.+.+..+-+-+
T Consensus        37 ~sWC~pCk~~~P~~~~l~   54 (119)
T d1woua_          37 KSWCPDCVQAEPVVREGL   54 (119)
T ss_dssp             CBSCHHHHHHHHHHHHHG
T ss_pred             CCCChhHHHHHHHHHHHH
Confidence            369999999999886543

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=88.49  E-value=0.11  Score=38.04  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=18.4

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|-|.||+||++-+..|-+-
T Consensus        24 lV~fya~wC~~Ck~~~p~~~~l   45 (116)
T d2djja1          24 LIEFYAPWCGHCKALAPKYEEL   45 (116)
T ss_dssp             EEEEECSSCTTHHHHHHHHHHH
T ss_pred             EEEEEecccccccccchHHHHH
Confidence            5788899999999988887653

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.26  E-value=0.089  Score=38.92  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=19.5

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|++.|||.|.+.|+++-+-
T Consensus        19 i~lft~~~C~~C~~a~~~L~~~   40 (100)
T d1wjka_          19 LTLFTKAPCPLCDEAKEVLQPY   40 (100)
T ss_dssp             EEEEECSSCHHHHHHHHHTSTT
T ss_pred             EEEEECCCCCChHHHHHHHHHh
Confidence            5699999999999999998754

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.24  E-value=0.12  Score=37.60  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=18.5

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|.+.||++|...+..|-+=
T Consensus        22 vv~F~a~wC~~C~~~~~~~~~l   43 (103)
T d1syra_          22 IVDFFAEWCGPCKRIAPFYEEC   43 (103)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEeCCcccCcccccccchhh
Confidence            4668899999999999888653

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.75  E-value=0.13  Score=39.44  Aligned_cols=22  Identities=27%  Similarity=0.649  Sum_probs=18.6

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|-|.||+||.+.+..|-+=
T Consensus        34 lV~F~a~wC~~C~~~~p~~~~l   55 (140)
T d2b5ea1          34 LVLYYAPWCGHCKRLAPTYQEL   55 (140)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEEeccCcccchhHHHHHHH
Confidence            4789999999999998887653

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.38  E-value=0.081  Score=39.26  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=17.4

Q ss_pred             ceeeccccChhhHHHHHhHHhh
Q 022610          268 AKMYGAFWCSHCLEQKQVLHQS  289 (294)
Q Consensus       268 a~~yga~wCp~C~~Qk~lfg~~  289 (294)
                      .++|-|.||+||++.+..|-+-
T Consensus        28 lV~Fya~wC~~C~~~~p~~~~~   49 (120)
T d1meka_          28 LVEFYAPWCGHCKALAPEYAKA   49 (120)
T ss_dssp             EEEEECSSCSTTSTTHHHHHHH
T ss_pred             EEEEECCCcCCccccchhhhhh
Confidence            4567799999999988777653

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.28  E-value=0.15  Score=40.35  Aligned_cols=27  Identities=19%  Similarity=0.447  Sum_probs=22.0

Q ss_pred             ccccceeeccccChhhHHHHHhHHhhh
Q 022610          264 HAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       264 ~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++.-.+.+.+.|||+|.+..-.+.+-+
T Consensus        54 ~~~~~l~~~~tWC~~C~~~~P~l~~l~   80 (166)
T d1z6na1          54 RRYRLLVAGEMWCPDCQINLAALDFAQ   80 (166)
T ss_dssp             SCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEeCcCccHHHHHHHHHHHH
Confidence            455578899999999999988887644

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=85.70  E-value=0.088  Score=40.30  Aligned_cols=29  Identities=21%  Similarity=0.368  Sum_probs=18.8

Q ss_pred             HHHHHhccccceeeccccChhhHHHHHhH
Q 022610          258 SLAKHLHAIGAKMYGAFWCSHCLEQKQVL  286 (294)
Q Consensus       258 ~la~~L~~~ga~~yga~wCp~C~~Qk~lf  286 (294)
                      .+++.=.+.-...+=+.|||||+++....
T Consensus        25 ~~~~~kgK~vll~fwa~wC~~C~~~~p~l   53 (144)
T d1knga_          25 DPAAFKGKVSLVNVWASWCVPCHDEAPLL   53 (144)
T ss_dssp             CGGGGTTSCEEEEEECTTCHHHHHHHHHH
T ss_pred             CHHHhCCCEEEEEeeccccccccccCchh
Confidence            34443345556666699999998775443

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.62  E-value=0.18  Score=37.96  Aligned_cols=21  Identities=0%  Similarity=-0.189  Sum_probs=15.8

Q ss_pred             ccceeeccccChhhHHHHHhHHh
Q 022610          266 IGAKMYGAFWCSHCLEQKQVLHQ  288 (294)
Q Consensus       266 ~ga~~yga~wCp~C~~Qk~lfg~  288 (294)
                      .=.++|-|.||+||.  +.-|-+
T Consensus        21 ~~lV~Fya~wC~~ck--~p~f~k   41 (122)
T d2c0ga2          21 YSVVKFDIASPYGEK--HEAFTA   41 (122)
T ss_dssp             EEEEEEEESSCCSHH--HHHHHH
T ss_pred             cEEEEEECCCCCccc--CHHHHH
Confidence            345899999999998  355554

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=84.01  E-value=0.075  Score=40.39  Aligned_cols=29  Identities=17%  Similarity=0.282  Sum_probs=19.1

Q ss_pred             HHHHhccccceeeccccChhhHHHHHhHH
Q 022610          259 LAKHLHAIGAKMYGAFWCSHCLEQKQVLH  287 (294)
Q Consensus       259 la~~L~~~ga~~yga~wCp~C~~Qk~lfg  287 (294)
                      |..+=.+.=..+|-|.|||||+++..-+.
T Consensus        18 l~~~~gk~vvl~F~a~wC~~C~~~~~~l~   46 (143)
T d2fy6a1          18 VYLKKDKPTLIKFWASWCPLCLSELGQTE   46 (143)
T ss_dssp             GGCCTTSCEEEEEECTTCHHHHTTHHHHH
T ss_pred             HHHhCCCEEEEEEECCCCccccccCcchh
Confidence            33333444457888999999997654443

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.45  E-value=0.23  Score=37.11  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=23.1

Q ss_pred             HHHHHhccccceeeccccChhhHHHHHhHHhhh
Q 022610          258 SLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSL  290 (294)
Q Consensus       258 ~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~a  290 (294)
                      ++.+.-.+.=...|=|.|||+|.+|...+.+-+
T Consensus        19 ~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~   51 (134)
T d1zzoa1          19 HGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVA   51 (134)
T ss_dssp             EGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             eHHHhCCCEEEEEecccccCcccccchhhHHHH
Confidence            344443445567788999999999987776643

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=80.08  E-value=0.25  Score=37.85  Aligned_cols=31  Identities=26%  Similarity=0.439  Sum_probs=22.4

Q ss_pred             HHHHHHhccccceeeccccChhhHHHHHhHH
Q 022610          257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLH  287 (294)
Q Consensus       257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg  287 (294)
                      +.|++.=.+.=...+-|.|||+|+++...+-
T Consensus        21 v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~   51 (144)
T d1o73a_          21 VSLGSLVGKTVFLYFSASWCPPCRGFTPVLA   51 (144)
T ss_dssp             BCSGGGTTCEEEEEEECTTCHHHHHHHHHHH
T ss_pred             EeHHHhCCCEEEEEeChhhCccchhhhHHHH
Confidence            4556554566678888999999998765543