Citrus Sinensis ID: 022619

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MEAGTIFYSAIPWKPKQPFPRNPSSFPRFIRASASSQSQGGYRGPKPSQDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKYSNIVPSMVQEGI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEccEEEEEEEEEccccccccHHHHHHHcccccHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEEEcccEEEEEEEcccccccccccccccccccccHHHHHHHHccccEEEEEccccccccEcccccccccEEEEEEccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHcccc
Coil and Loop (DISEMBL)
MEAGTIFYsaipwkpkqpfprnpssfprfirasassqsqggyrgpkpsqdlVADWVMnnddavrslpiyvGGASLLAVLFNRtvsgiapvadasssqSRADLLAISLAVTSILTGLVWlsirpksitvvnpkgvecQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMaaesgnsgeAVIVDASKLKQGSVYLGVMRSKAQRYLANLLlypgrselpflpsntqavilqplgdkgiaiiggdtirgfttsdQSWIAFIGEKLDATLAKYSNIVPSMVQEGI
Flexible Loop (DISEMBL)
meagtifysaipwkpkqpFPRNPSSFPRFIRASassqsqggyrgpKPSQDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKYSNIVPSMVQEGI
Low Complexity Region (SEG)
MEAGTIFYSAIPWKPKQpfprnpssfprfIRASASSQSQGGYRGPKPSQDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKYSNIVPSMVQEGI
Disordered region (IsUnstruct)
*****IFYSAIPW*************************************LVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVA********ADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKYSNIV********
Disordered Region (DISOPRED)
****TI**SAIPWKPKQP************************************WVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAP*********RADLLAISLAVTSILTGLVWL*****************QMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQ*S*********AQRYLANLLLYPGRSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKY************
Disordered Region (DISEMBL)
MEAGTIFYSAIPWKPKQPFPRNPSSFPRFIRA*************KPSQDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVA********ADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKYSNIVPSMVQEGI
Disordered Region (DISPRO)
****TIFYSAIPWKPKQPFPRNPSSF********************PSQDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKYSNIVP*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAGTIFYSAIPWKPKQPFPRNPSSFPRFIRASASSQSQGGYRGPKPSQDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKYSNIVPSMVQEGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
255558330	336	conserved hypothetical protein [Ricinus	1.0	0.875	0.719	1e-115
42562815	297	cofactor assembly of complex C [Arabidop	0.959	0.949	0.733	1e-112
297840573	298	hypothetical protein ARALYDRAFT_475325 [	0.959	0.946	0.727	1e-112
449434863	300	PREDICTED: uncharacterized protein LOC10	0.955	0.936	0.731	1e-111
449523652	300	PREDICTED: uncharacterized LOC101208049	0.955	0.936	0.731	1e-110
5080827	305	Hypothetical protein [Arabidopsis thalia	0.959	0.924	0.709	1e-110
225424815	291	PREDICTED: uncharacterized protein LOC10	0.986	0.996	0.711	1e-103
356501956	299	PREDICTED: uncharacterized protein LOC10	0.986	0.969	0.637	2e-97
51971242	242	hypothetical protein [Arabidopsis thalia	0.806	0.979	0.716	5e-89
218195714	293	hypothetical protein OsI_17698 [Oryza sa	0.846	0.849	0.654	1e-86

>gi|255558330|ref|XP_002520192.1| conserved hypothetical protein [Ricinus communis] gi|223540684|gb|EEF42247.1| conserved hypothetical protein [Ricinus communis]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/296 (71%), Positives = 242/296 (81%), Gaps = 2/296 (0%)

Query: 1   MEAGTIFYSAIPWKPKQPFP--RNPSSFPRFIRASASSQSQGGYRGPKPSQDLVADWVMN 58
           MEAGTI  ++I ++    FP  R   +   F+RAS+   SQG YRGPKP +DLVADWV N
Sbjct: 41  MEAGTILPTSILFRSPFHFPISRPLQNLRFFVRASSDLNSQGKYRGPKPKRDLVADWVSN 100

Query: 59  NDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVW 118
           NDD VRSLPIYVGGASLLAVLFNR  SGIAPVADASSSQSRADLL + LAVT+IL GL+W
Sbjct: 101 NDDTVRSLPIYVGGASLLAVLFNRAASGIAPVADASSSQSRADLLTLGLAVTNILAGLIW 160

Query: 119 LSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQ 178
           LSI+PKSI++VNP+GVECQ+I S+LPD VVSELLWAWESLSA TCCRSLVVVYD +  LQ
Sbjct: 161 LSIKPKSISLVNPQGVECQIILSHLPDYVVSELLWAWESLSAATCCRSLVVVYDCVCFLQ 220

Query: 179 IGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQA 238
           IGMAAES N GEA+ VDA+KL QGS+   + +S AQ YLANL LYPGR+ELPFLP NTQA
Sbjct: 221 IGMAAESPNKGEALSVDAAKLMQGSLVQAIKKSGAQSYLANLSLYPGRTELPFLPLNTQA 280

Query: 239 VILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKYSNIVPSMVQEGI 294
           VILQPLGDKG+AIIGGDTIRGFTTSDQ+WI FIGEKLD+TLAK     P  +Q+ I
Sbjct: 281 VILQPLGDKGVAIIGGDTIRGFTTSDQAWITFIGEKLDSTLAKCVISSPLAMQDRI 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562815|ref|NP_176193.2| cofactor assembly of complex C [Arabidopsis thaliana] gi|42571921|ref|NP_974051.1| cofactor assembly of complex C [Arabidopsis thaliana] gi|34146872|gb|AAQ62444.1| At1g59840 [Arabidopsis thaliana] gi|51968666|dbj|BAD43025.1| hypothetical protein [Arabidopsis thaliana] gi|51968878|dbj|BAD43131.1| hypothetical protein [Arabidopsis thaliana] gi|62320426|dbj|BAD94887.1| hypothetical protein [Arabidopsis thaliana] gi|332195505|gb|AEE33626.1| cofactor assembly of complex C [Arabidopsis thaliana] gi|332195506|gb|AEE33627.1| cofactor assembly of complex C [Arabidopsis thaliana]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/285 (73%), Positives = 235/285 (82%), Gaps = 3/285 (1%)

Query: 1   MEAGTIFYS-AIPWKPKQPFPRNPSSFPRFIRASASSQSQG--GYRGPKPSQDLVADWVM 57
           MEA  I     IPW   + F   P  FPRFIRAS+SS SQ    Y GPKP ++LVAD++ 
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPLDFPRFIRASSSSTSQKPKTYEGPKPRKNLVADFIS 60

Query: 58  NNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLV 117
            NDD VRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLA+ LAVT++LTGLV
Sbjct: 61  KNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTGLV 120

Query: 118 WLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLL 177
           WLSIRPKSIT VNPKGVEC+++ S LP S+VSELLWAWESL   TCC+SLV+VY+GI L+
Sbjct: 121 WLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGICLI 180

Query: 178 QIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQ 237
           QIGM AES    + VIV   KL QGSVY GVM+SKAQ YLANL LYPGRSELPFLP+NTQ
Sbjct: 181 QIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPANTQ 240

Query: 238 AVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKY 282
           AVILQPLGDKGIA+IGG+TIRGFT+SDQ+WI+ IGEKLDATL +Y
Sbjct: 241 AVILQPLGDKGIAVIGGNTIRGFTSSDQAWISSIGEKLDATLGRY 285

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840573|ref|XP_002888168.1| hypothetical protein ARALYDRAFT_475325 [Arabidopsis lyrata subsp. lyrata] gi|297334009|gb|EFH64427.1| hypothetical protein ARALYDRAFT_475325 [Arabidopsis lyrata subsp. lyrata]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/286 (72%), Positives = 237/286 (82%), Gaps = 4/286 (1%)

Query: 1   MEAGTIFYSAIPWKPKQPFPRNPSSFPRFIRA----SASSQSQGGYRGPKPSQDLVADWV 56
           MEA  I    IPW P + F R PS FPRFIRA    S++SQ    YRGPKPS++LVAD++
Sbjct: 1   MEARIILQIQIPWNPNRKFSRTPSDFPRFIRAYSSSSSTSQKPRSYRGPKPSKNLVADFI 60

Query: 57  MNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGL 116
             NDD VRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLA+ LAVT++LTGL
Sbjct: 61  SKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTGL 120

Query: 117 VWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYL 176
           VWLSIRPKSIT V P GVE +++ S LP SVVSELLWAWES    TCC+SLV+VY+GI L
Sbjct: 121 VWLSIRPKSITPVQPDGVEWKVVESGLPASVVSELLWAWESFKVATCCKSLVIVYNGICL 180

Query: 177 LQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNT 236
           +QIGM AES    +AV+V+  KL QGSVY GVM+SKAQ YLANL LYPGRSELPFLP+NT
Sbjct: 181 IQIGMVAESPEDKKAVVVNTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPANT 240

Query: 237 QAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKY 282
           QAVILQPLGDKGIA+IGG+TIRGFT++DQ+WI+ IGEKLDATL +Y
Sbjct: 241 QAVILQPLGDKGIAVIGGNTIRGFTSADQAWISSIGEKLDATLGRY 286

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434863|ref|XP_004135215.1| PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/290 (73%), Positives = 236/290 (81%), Gaps = 9/290 (3%)

Query: 1   MEAGTIF-YSAIPWKPKQPFPRNPSS----FPRFIRASASSQSQGGYRGPKPSQDLVADW 55
           MEAG  F  ++IPW     F R  SS    FP  +RAS SS SQ  YRGPKPS +LVADW
Sbjct: 1   MEAGIFFPLTSIPWTFN--FKRTHSSLRPSFPLIVRAS-SSTSQRSYRGPKPSTNLVADW 57

Query: 56  VMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTG 115
           V NNDD VRSLPIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL + LAVT++L G
Sbjct: 58  VSNNDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 117

Query: 116 LVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIY 175
           LVWLSIRPKSIT VNP GVE + ICS LPD V SELLW W+SLS VTCCRSLVVVYDG  
Sbjct: 118 LVWLSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTC 177

Query: 176 LLQIGMAAESGN-SGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPS 234
           + Q+G AAES   +GEA  V+A KL QGS+Y GV++S+AQ YLANL LYPG+SELPFLPS
Sbjct: 178 IFQVGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 237

Query: 235 NTQAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKYSN 284
           NTQAVILQPLG+KGIAIIGG+TIRGFTTSDQ+WI+F+GEKLDATL+KYSN
Sbjct: 238 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISFVGEKLDATLSKYSN 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523652|ref|XP_004168837.1| PREDICTED: uncharacterized LOC101208049 [Cucumis sativus]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/290 (73%), Positives = 236/290 (81%), Gaps = 9/290 (3%)

Query: 1   MEAGTIF-YSAIPWKPKQPFPRNPSS----FPRFIRASASSQSQGGYRGPKPSQDLVADW 55
           MEAG  F  ++IPW     F R  SS    FP  +RAS SS SQ  YRGPKPS +LVADW
Sbjct: 1   MEAGIFFPLTSIPWTFN--FKRTHSSLRPSFPLIVRAS-SSTSQRSYRGPKPSTNLVADW 57

Query: 56  VMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTG 115
           V NNDD VRSLPIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL + LAVT++L G
Sbjct: 58  VSNNDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 117

Query: 116 LVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIY 175
           LVWLSIRPKSIT VNP GVE + ICS LPD V SELLW W+SLS VTCCRSLVVVYDG  
Sbjct: 118 LVWLSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 177

Query: 176 LLQIGMAAESGN-SGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPS 234
           + Q+G AAES   +GEA  V+A KL QGS+Y GV++S+AQ YLANL LYPG+SELPFLPS
Sbjct: 178 IFQVGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 237

Query: 235 NTQAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKYSN 284
           NTQAVILQPLG+KGIAIIGG+TIRGFTTSDQ+WI+F+GEKLDATL+KYSN
Sbjct: 238 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISFVGEKLDATLSKYSN 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5080827|gb|AAD39336.1|AC007258_25 Hypothetical protein [Arabidopsis thaliana]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/293 (70%), Positives = 236/293 (80%), Gaps = 11/293 (3%)

Query: 1   MEAGTIFYS-AIPWKPKQPFPRNPSSFPRFIRASASSQSQG--GYRGPKPSQDLVADWVM 57
           MEA  I     IPW   + F   P  FPRFIRAS+SS SQ    Y GPKP ++LVAD++ 
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPLDFPRFIRASSSSTSQKPKTYEGPKPRKNLVADFIS 60

Query: 58  NNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLV 117
            NDD VRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLA+ LAVT++LTGLV
Sbjct: 61  KNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTGLV 120

Query: 118 WLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLL 177
           WLSIRPKSIT VNPKGVEC+++ S LP S+VSELLWAWESL   TCC+SLV+VY+GI L+
Sbjct: 121 WLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGICLI 180

Query: 178 QIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQR--------YLANLLLYPGRSEL 229
           QIGM AES    + VIV   KL QGSVY GVM+SKA++        YLANL LYPGRSEL
Sbjct: 181 QIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKARKNNDCLSESYLANLSLYPGRSEL 240

Query: 230 PFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKY 282
           PFLP+NTQAVILQPLGDKGIA+IGG+TIRGFT+SDQ+WI+ IGEKLDATL +Y
Sbjct: 241 PFLPANTQAVILQPLGDKGIAVIGGNTIRGFTSSDQAWISSIGEKLDATLGRY 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424815|ref|XP_002267988.1| PREDICTED: uncharacterized protein LOC100255235 [Vitis vinifera] gi|296086476|emb|CBI32065.3| unnamed protein product [Vitis vinifera]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/295 (71%), Positives = 244/295 (82%), Gaps = 5/295 (1%)

Query: 1   MEAGTIFYSAIPWKPKQPFPRNPSSFPRFIRASASSQSQGGYRGPKPSQDLVADWVMNND 60
           MEAG +  + IPW+PK     +P +FPRF+RAS  S+SQG YRGPKP +D +ADWV NND
Sbjct: 1   MEAGRLLRTPIPWRPK--LAPSPPTFPRFVRAS--SKSQGRYRGPKPRRDWLADWVSNND 56

Query: 61  DAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLS 120
           D VRSLPIYVGG SLL+VLFNRT+SGIAPVADASSSQSRADLL + LAVT+IL GLVWLS
Sbjct: 57  DTVRSLPIYVGGVSLLSVLFNRTISGIAPVADASSSQSRADLLTLGLAVTNILAGLVWLS 116

Query: 121 IRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIG 180
           IRPKSI+VVNP+GVE + I   +  S+VSELLW WESLS VTCCRSLV++YD I +LQIG
Sbjct: 117 IRPKSISVVNPQGVESRRIYPNIAASLVSELLWVWESLSVVTCCRSLVILYDSICILQIG 176

Query: 181 MAAE-SGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAV 239
           MAAE S   GEA+ VDA+KL QGS+Y GVM+S AQ YLANL LYPG+SELPFLPSNTQAV
Sbjct: 177 MAAESSAGDGEAMAVDATKLMQGSLYQGVMKSGAQSYLANLSLYPGKSELPFLPSNTQAV 236

Query: 240 ILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKYSNIVPSMVQEGI 294
           ILQP+GDKGI IIGGDTIRGFT SDQ+WI  IGEK+DA+L+KY N +P  VQ+ +
Sbjct: 237 ILQPIGDKGIIIIGGDTIRGFTASDQAWITLIGEKVDASLSKYVNNLPVAVQDRV 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501956|ref|XP_003519789.1| PREDICTED: uncharacterized protein LOC100776666 [Glycine max]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/301 (63%), Positives = 224/301 (74%), Gaps = 11/301 (3%)

Query: 1   MEAGTIFYSAIPWKPKQPFPRNPSSF------PRFIRASASSQSQGGY--RGPKPSQDLV 52
           MEAGT    ++    + P P N ++       PRF  +S S  S   Y  RGP P +  +
Sbjct: 1   MEAGTAL--SLRLHTRIPIPINTANSNTLLFQPRFTLSSHSPSSFSAYSYRGPTPKRPFL 58

Query: 53  ADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSI 112
           ADWV  NDD VR+LPIYVG ASL A+L NR++SGIAPV DA SSQSRADLL + LAVT+I
Sbjct: 59  ADWVSQNDDVVRTLPIYVGSASLFAILLNRSLSGIAPVVDAGSSQSRADLLTLGLAVTNI 118

Query: 113 LTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYD 172
           L GLVWLS++PKSITVVNP+GVEC+ +C+ LP+   +ELLW WESLS  TCCRSLVVVY+
Sbjct: 119 LAGLVWLSVKPKSITVVNPRGVECKSLCATLPEVARNELLWVWESLSDATCCRSLVVVYE 178

Query: 173 GIYLLQIGMAAESG-NSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPF 231
              +LQIG AAES    G+AV VDA+KL QGSVY GVM+S AQ YLANL LYPG+SELPF
Sbjct: 179 SSCVLQIGFAAESSPGDGDAVSVDANKLMQGSVYQGVMKSGAQSYLANLSLYPGKSELPF 238

Query: 232 LPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKYSNIVPSMVQ 291
           LPSNTQAVILQPLGDKGIAIIGGDTIRGFT SDQ WI +IG KLD++LAKY    P   Q
Sbjct: 239 LPSNTQAVILQPLGDKGIAIIGGDTIRGFTGSDQVWITYIGAKLDSSLAKYLKHHPLTSQ 298

Query: 292 E 292
           +
Sbjct: 299 D 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971242|dbj|BAD44313.1| hypothetical protein [Arabidopsis thaliana] gi|51971329|dbj|BAD44329.1| hypothetical protein [Arabidopsis thaliana]

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 172/240 (71%), Positives = 192/240 (80%), Gaps = 3/240 (1%)

Query: 1   MEAGTIFYS-AIPWKPKQPFPRNPSSFPRFIRASASSQSQG--GYRGPKPSQDLVADWVM 57
           MEA  I     IPW   + F   P  FPRFIRAS+SS SQ    Y GPKP ++LVAD++ 
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPLDFPRFIRASSSSTSQKPKTYEGPKPRKNLVADFIS 60

Query: 58  NNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLV 117
            NDD VRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLA+ LAVT++LTGLV
Sbjct: 61  KNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTGLV 120

Query: 118 WLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLL 177
           WLSIRPKSIT VNPKGVEC+++ S LP S+VSELLWAWESL   TCC+SLV+VY+GI L+
Sbjct: 121 WLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGICLI 180

Query: 178 QIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQ 237
           QIGM AES    + VIV   KL QGSVY GVM+SKAQ YLANL LYPGRSELPFLP+NTQ
Sbjct: 181 QIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPANTQ 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218195714|gb|EEC78141.1| hypothetical protein OsI_17698 [Oryza sativa Indica Group]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 163/249 (65%), Positives = 193/249 (77%)

Query: 33  SASSQSQGGYRGPKPSQDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVAD 92
           S   Q +   R  +P QD V +WV +ND  VR LPI VGGASLLAVL NR VSGIA VAD
Sbjct: 44  SNQQQQEMHIRALQPRQDWVGEWVRSNDTLVRGLPILVGGASLLAVLLNRAVSGIAAVAD 103

Query: 93  ASSSQSRADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELL 152
           ASSSQSRAD+L ++L+VT IL GLVWLSIRPKSI+ V P+GVEC+ + + + DS + ELL
Sbjct: 104 ASSSQSRADILTLALSVTDILAGLVWLSIRPKSISPVVPRGVECKRVGTGVLDSALRELL 163

Query: 153 WAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSK 212
           W W+SL+  TCC+SLVVVY G  +LQIG+AA S   G AV+VDA K  QGS+Y   M SK
Sbjct: 164 WTWDSLTTATCCKSLVVVYGGNCVLQIGVAAGSPEDGNAVMVDAQKFMQGSLYRSAMESK 223

Query: 213 AQRYLANLLLYPGRSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIG 272
            Q YLANL LYPGR+ELPFLP+NTQA+ILQP+GDKGIA+IGGDTIRGFT  DQ+WIA I 
Sbjct: 224 KQSYLANLALYPGRTELPFLPANTQALILQPIGDKGIAVIGGDTIRGFTNLDQAWIAMIA 283

Query: 273 EKLDATLAK 281
           +KLDATL+K
Sbjct: 284 DKLDATLSK 292

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2025896	297	CCB4 "AT1G59840" [Arabidopsis	0.959	0.949	0.712	7.1e-100

TAIR|locus:2025896 CCB4 "AT1G59840" [Arabidopsis thaliana (taxid:3702)]

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 203/285 (71%), Positives = 229/285 (80%)

Query:     1 MEAGTIFYSA-IPWKPKQXXXXXXXXXXXXIRASASSQSQGG--YRGPKPSQDLVADWVM 57
             MEA  I     IPW   +            IRAS+SS SQ    Y GPKP ++LVAD++ 
Sbjct:     1 MEARIILLRIQIPWSANRQFSHPPLDFPRFIRASSSSTSQKPKTYEGPKPRKNLVADFIS 60

Query:    58 NNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLV 117
              NDD VRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLA+ LAVT++LTGLV
Sbjct:    61 KNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTGLV 120

Query:   118 WLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLL 177
             WLSIRPKSIT VNPKGVEC+++ S LP S+VSELLWAWESL   TCC+SLV+VY+GI L+
Sbjct:   121 WLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGICLI 180

Query:   178 QIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQ 237
             QIGM AES    + VIV   KL QGSVY GVM+SKAQ YLANL LYPGRSELPFLP+NTQ
Sbjct:   181 QIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPANTQ 240

Query:   238 AVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKY 282
             AVILQPLGDKGIA+IGG+TIRGFT+SDQ+WI+ IGEKLDATL +Y
Sbjct:   241 AVILQPLGDKGIAVIGGNTIRGFTSSDQAWISSIGEKLDATLGRY 285


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      294       282   0.00083  115 3  11 22  0.38    34
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  194 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.11u 0.11s 20.22t   Elapsed:  00:00:01
  Total cpu time:  20.11u 0.11s 20.22t   Elapsed:  00:00:01
  Start:  Fri May 10 08:42:49 2013   End:  Fri May 10 08:42:50 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010190 "cytochrome b6f complex assembly" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	CCB4	CCB4 (COFACTOR ASSEMBLY OF COMPLEX C); COFACTOR ASSEMBLY OF COMPLEX C (CCB4); FUNCTIONS IN- molecular_function unknown; INVOLVED IN- cytochrome b6f complex assembly; LOCATED IN- chloroplast; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 13 growth stages; Has 218 Blast hits to 218 proteins in 60 species- Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 95 (source- NCBI BLink). (297 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	CCB1	CCB1 (COFACTOR ASSEMBLY OF COMPLEX C); COFACTOR ASSEMBLY OF COMPLEX C (CCB1); FUNCTIONS IN- mol [...] (267 aa)				•			•		0.968
	AT5G21920	YGGT family protein; YGGT family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN [...] (251 aa)				•			•		0.948
	AT4G27990	YGGT family protein; YGGT family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN [...] (218 aa)							•		0.923
	emb1990	emb1990 (embryo defective 1990); embryo defective 1990 (emb1990); FUNCTIONS IN- molecular_funct [...] (232 aa)				•			•		0.884
	AT5G52970	thylakoid lumen 15.0 kDa protein; thylakoid lumen 15.0 kDa protein; FUNCTIONS IN- molecular_fun [...] (223 aa)			•	•					0.821
	PPL1	PPL1 (PsbP-like protein 1); calcium ion binding; PsbP-like protein 1 (PPL1); FUNCTIONS IN- calc [...] (230 aa)			•	•					0.812
	AT1G49380	cytochrome c biogenesis protein family; cytochrome c biogenesis protein family; FUNCTIONS IN- m [...] (547 aa)	•		•	•			•		0.790
	AT5G27560	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (341 aa)			•	•					0.778
	AT1G14345	oxidoreductase; oxidoreductase; FUNCTIONS IN- oxidoreductase activity; INVOLVED IN- oxidation r [...] (196 aa)			•	•					0.761
	CRR6	CRR6 (chlororespiratory reduction 6); Encodes a chloroplast thylakoid membrane protein. Require [...] (246 aa)			•	•					0.719

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
pfam11152	195	pfam11152, DUF2930, Protein of unknown function (D	3e-68

>gnl|CDD|221004 pfam11152, DUF2930, Protein of unknown function (DUF2930)

 Score =  210 bits (536), Expect = 3e-68
 Identities = 77/211 (36%), Positives = 113/211 (53%), Gaps = 16/211 (7%)

Query: 66  LPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKS 125
           LP+  G    L +L NR  +     AD + SQSRAD+L + LA   IL GL+W   +P+S
Sbjct: 1   LPLIAGLLGGLLLLLNRLST-----ADITPSQSRADVLGLLLAAGLILVGLLWTRAQPRS 55

Query: 126 ITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAES 185
              V+ +G +   +   L +++  EL WA   L   T   S++V +DG  LL+ G+    
Sbjct: 56  PEAVDLEGEQGFELSPDLSEALKEELAWASHLLLTATPAASVLVYWDGQVLLRRGILGP- 114

Query: 186 GNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLG 245
                       K + G +    + ++   YL NL LYPGR E  +LP NTQAVI+QPLG
Sbjct: 115 ----------PVKFEPGEICKRALETQQLVYLVNLKLYPGRIEFDYLPPNTQAVIVQPLG 164

Query: 246 DKGIAIIGGDTIRGFTTSDQSWIAFIGEKLD 276
           ++G+ ++GG + R FT SD+ WI    +KL 
Sbjct: 165 NRGVLVLGGWSPRCFTRSDERWIEGWADKLR 195

This family of proteins has no known function. Length = 195

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
PF11152	195	DUF2930: Protein of unknown function (DUF2930); In	100.0
PF13185	148	GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_	96.85
smart00065	149	GAF Domain present in phytochromes and cGMP-specif	96.82
PF13492	129	GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_	96.78
PF01590	154	GAF: GAF domain; InterPro: IPR003018 This domain i	96.29
PRK11061	748	fused phosphoenolpyruvate-protein phosphotransfera	94.07
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	93.43
TIGR02851	180	spore_V_T stage V sporulation protein T. Members o	92.37
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	90.27
COG1956	163	GAF domain-containing protein [Signal transduction	89.78

>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function

Probab=100.00  E-value=1.1e-80  Score=555.34  Aligned_cols=195  Identities=43%  Similarity=0.677  Sum_probs=190.6

Q ss_pred             hhHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCcccCCCCccceeecCCCCH
Q 022619           66 LPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLVWLSIRPKSITVVNPKGVECQMICSYLPD  145 (294)
Q Consensus        66 LP~~vG~l~~~llL~Nr~lsgiAp~~~~t~aQ~RaevLgl~Lsa~liL~Gllw~~~~P~~~~~V~L~G~e~f~l~~~Lsd  145 (294)
                      ||+++|+++++++++||+++     +++||||+|||+||++||++|||+|++|+++||+++++|+|+|+|+|+|++||||
T Consensus         1 LPl~vG~l~~~lll~N~~~~-----~~~t~sq~RaevLg~~ls~~liL~g~lw~~l~p~~~~~v~L~G~~~f~l~~~L~~   75 (195)
T PF11152_consen    1 LPLIVGLLGGSLLLLNRLSG-----ADATPSQSRAEVLGLILSAVLILTGLLWQRLKPRSPEAVDLPGEQGFELSPDLSD   75 (195)
T ss_pred             CceEehHHHHHHHHhhhccc-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCCccceEECCCCCH
Confidence            69999999999999999776     8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHhhhccccEEEEEECCeEEEEEeeccCCCCCccchhhcccccchhhHHHHHhhccCceecccccccCC
Q 022619          146 SVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPG  225 (294)
Q Consensus       146 ~~k~ELAWas~~LLtnT~a~svlV~~~G~vllrRG~~~~~~~~g~a~~~d~~~~~pG~I~~r~~~~~~~iyL~nl~lyPG  225 (294)
                      ++|+||||+||+|||||+|+||+|||||+++||||+++++           ++|+||+||+++|++++++||+|++||||
T Consensus        76 ~~k~ELAWas~~LLt~T~a~svlV~~~g~~llrrG~~~~~-----------~~~~~g~i~~~~~~~~~~~yL~nl~lyPG  144 (195)
T PF11152_consen   76 AAKEELAWASYALLTNTNARSVLVYYDGRVLLRRGILGSP-----------SKFKPGPICQRAMESGKLIYLVNLKLYPG  144 (195)
T ss_pred             HHHHHHHHHHHHHHhhCCceEEEEEECCEEEEEeeccCCC-----------CCcchHHHHHHHHhcCCceeccccccCCC
Confidence            9999999999999999999999999999999999999864           38999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCeeEEEecCCCeEEEEecCCCcccChhhHHHHHHHHHHHH
Q 022619          226 RSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLD  276 (294)
Q Consensus       226 r~Ef~~LP~ntqsVlvQPig~~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~  276 (294)
                      |+||+|||+|||||||||+|++||+|+|||++||||||||+||++|||||+
T Consensus       145 r~Ef~~lP~ntq~VlvqP~g~~G~lvlgs~~~R~ft~~D~~Wi~~iA~Kl~  195 (195)
T PF11152_consen  145 RVEFDYLPENTQSVLVQPLGQNGVLVLGSNSPRAFTKSDEAWIAGIADKLR  195 (195)
T ss_pred             chhhhhcCCCCcEEEEEEcCCCeEEEEeeCCccccCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999985

>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A

Probab=96.85  E-value=0.0095  Score=47.00  Aligned_cols=71  Identities=11%  Similarity=0.214  Sum_probs=51.7

Q ss_pred             HhhccCceecc-cccccCCCCCCCCCCCCCCeeEEEecCCC----eEEEEecCCCcccChhhHHHHHHHHHHHHHHHh
Q 022619          208 VMRSKAQRYLA-NLLLYPGRSELPFLPSNTQAVILQPLGDK----GIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLA  280 (294)
Q Consensus       208 ~~~~~~~iyL~-nl~lyPGr~Ef~~LP~ntqsVlvQPig~~----Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~tL~  280 (294)
                      +++++++++.. +..-+++  .....-.|.+++++.||-.+    |+|.+.+..++.||+.|+.+++.+|+-+...|+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a~aie  148 (148)
T PF13185_consen   73 VLRTGEPIIINDDDSSFPP--WELARHPGIRSILCVPLRSGGEVIGVLSLYSKEPNAFSEEDLELLEALADQIAIAIE  148 (148)
T ss_dssp             HHHHTS-EEESCCCGGGST--THHHCCTT-SEEEEEEEEETTEEEEEEEEEESSTT---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCceEEEeCccccccc--hhhhccccCCEEEEEEEeECCEEEEEEEEeeCCCCCcCHHHHHHHHHHHHHHHHHhC
Confidence            37889999998 2222222  22455678999999999654    899999999999999999999999999887764

...

>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases

Probab=96.82  E-value=0.0081  Score=44.58  Aligned_cols=80  Identities=15%  Similarity=0.159  Sum_probs=61.0

Q ss_pred             hHHHHHhhccCceecccccccCCCCCCCCCC-CCCCeeEEEecCCC----eEEEEecC-CCcccChhhHHHHHHHHHHHH
Q 022619          203 SVYLGVMRSKAQRYLANLLLYPGRSELPFLP-SNTQAVILQPLGDK----GIAIIGGD-TIRGFTTSDQSWIAFIGEKLD  276 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP-~ntqsVlvQPig~~----Gvlvlgs~-s~R~FT~kDe~WI~~iA~KL~  276 (294)
                      +++.+++++++.++..+..-.+-..+....+ .+..+.++.||..+    |++.+... .+|.|++.|+..+..+|+.+.
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~Pl~~~~~~~G~l~~~~~~~~~~~~~~~~~~l~~~~~~i~  136 (149)
T smart00065       57 GLAGRVAETGRPLNIPDVEADPVFALDLLGRYQGVRSFLAVPLVADGELVGVLALHNKDSPRPFTEEDEELLQALANQLA  136 (149)
T ss_pred             ChHHHHHHcCCeEEeechhhCCccccccccceeceeeEEEeeeeecCEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence            5688899999999988876544111112222 23799999998543    78888887 799999999999999999999


Q ss_pred             HHHhhc
Q 022619          277 ATLAKY  282 (294)
Q Consensus       277 ~tL~~~  282 (294)
                      ..+++.
T Consensus       137 ~~l~~~  142 (149)
T smart00065      137 IALANA  142 (149)
T ss_pred             HHHHHH
Confidence            888763

Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.

>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A

Probab=96.78  E-value=0.0068  Score=46.70  Aligned_cols=111  Identities=11%  Similarity=0.157  Sum_probs=72.4

Q ss_pred             HHHhhhccccEEEEE--ECC--eEEEEEeeccCCCCCccchhhcccccchhhHHHHHhhccCceecccccccCCCCCCCC
Q 022619          156 ESLSAVTCCRSLVVV--YDG--IYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPF  231 (294)
Q Consensus       156 ~~LLtnT~a~svlV~--~~G--~vllrRG~~~~~~~~g~a~~~d~~~~~pG~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~  231 (294)
                      +.+...+.+..+.|+  .++  +..+..+. ........  .++    ..-+++.++.++++.++..+..-   +.+   
T Consensus        11 ~~l~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~--~l~----~~~~~~~~~~~~~~~~~~~~~~~---~~~---   77 (129)
T PF13492_consen   11 ELLRELLGADRAALFLLDEDGNRLRVVAGW-GGDPRLSE--SLP----EDDPLIGRALETGEPVSVPDIDE---RDF---   77 (129)
T ss_dssp             HHHHHHST-SEEEEEEEETTCECEEEEEEE-SS-GCGHH--CEE----TTSHHHHHHHHHTS-EEESTCCC----TT---
T ss_pred             HHHHHHhCCCEEEEEEEECCCCEEEEEEEe-CCCccccc--cCC----CCccHHHHHHhhCCeEEeccccc---ccC---
Confidence            445566666665543  433  34455665 22111001  111    34577889999999877766422   222   


Q ss_pred             CCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHHHHhh
Q 022619          232 LPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAK  281 (294)
Q Consensus       232 LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~tL~~  281 (294)
                        .+.+++++.||..    -|+|.++....+.||++|+..++.+|+-+..++++
T Consensus        78 --~~~~s~~~vPl~~~~~~~Gvl~~~~~~~~~~~~~d~~~l~~~a~~~a~alen  129 (129)
T PF13492_consen   78 --LGIRSLLVVPLRSRDRVIGVLCLDSREPEEFSDEDLQLLESLANQLAIALEN  129 (129)
T ss_dssp             --TTTCEEEEEEEEETTEEEEEEEEEECTTCG-SHHHHHHHHHHHHHHHHHHH-
T ss_pred             --CCCCEEEEEEEeECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence              6679999999954    78999999999999999999999999999988763

>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases

Probab=96.29  E-value=0.013  Score=46.50  Aligned_cols=78  Identities=15%  Similarity=0.204  Sum_probs=63.9

Q ss_pred             hhHHHHHhhccCceecccccccCCCCCC----CCC------------CCCCCeeEEEecCC----CeEEEEecCCC-ccc
Q 022619          202 GSVYLGVMRSKAQRYLANLLLYPGRSEL----PFL------------PSNTQAVILQPLGD----KGIAIIGGDTI-RGF  260 (294)
Q Consensus       202 G~I~~r~~~~~~~iyL~nl~lyPGr~Ef----~~L------------P~ntqsVlvQPig~----~Gvlvlgs~s~-R~F  260 (294)
                      .++|..++++++.+.+.|..-.|-..+.    ..+            ..+..++++.|+..    -|+|.+....+ |.|
T Consensus        56 ~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~g~~~G~l~l~~~~~~~~~  135 (154)
T PF01590_consen   56 ESICGQVLQSREPIVISDVAADPRFAPQIAAQSALRALSSAERPFLAEYGVRSYLCVPIISGGRLIGVLSLYRTRPGRPF  135 (154)
T ss_dssp             SSHHHHHHHHTSCEEESSSGGSTTSSCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEEEEETTEEEEEEEEEEESSSSS-
T ss_pred             ccHHHHHHhCCCeEeeccccccccccccccccccccccccccccccccccCceeeEeeeecccCcEEEEEEEECCCCCCc
Confidence            6779999999999999999877765554    223            56999999999954    47999999999 999


Q ss_pred             ChhhHHHHHHHHHHHHHHH
Q 022619          261 TTSDQSWIAFIGEKLDATL  279 (294)
Q Consensus       261 T~kDe~WI~~iA~KL~~tL  279 (294)
                      |+.|...++.+|+.+..++
T Consensus       136 ~~~d~~ll~~~a~~~a~ai  154 (154)
T PF01590_consen  136 TEEDLALLESFAQQLAIAI  154 (154)
T ss_dssp             -HHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhC
Confidence            9999999999999988754

cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....

>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional

Probab=94.07  E-value=0.84  Score=48.87  Aligned_cols=78  Identities=21%  Similarity=0.273  Sum_probs=63.4

Q ss_pred             HHHHHhhccCceecccccccCCCCCCC-CCCCCCCeeEEEecCCC----eEEEEecCCCcccChhhHHHHHHHHHHHHHH
Q 022619          204 VYLGVMRSKAQRYLANLLLYPGRSELP-FLPSNTQAVILQPLGDK----GIAIIGGDTIRGFTTSDQSWIAFIGEKLDAT  278 (294)
Q Consensus       204 I~~r~~~~~~~iyL~nl~lyPGr~Ef~-~LP~ntqsVlvQPig~~----Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~t  278 (294)
                      +|.++.++++++.+.|..--|....++ ..-+++.|+++.|+-.+    |+|-+....+|.||+.|+.++..+|.-+..+
T Consensus        74 i~G~Va~tg~pV~V~Dv~~dprf~~~~~~~~~~~~S~L~VPL~~~geVIGVL~v~~~~~~~Fs~~d~~lL~~LA~~aAiA  153 (748)
T PRK11061         74 IVGLVGRLAEPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIYRRQLLGVLVVQQRELRQFDESEESFLVTLATQLAAI  153 (748)
T ss_pred             hHHHHhccCceEEECCcccCcccccCccccCccceEEEEEEEeeCCEEEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            588999999999999998655432221 22467899999999653    6888889999999999999999999999888


Q ss_pred             Hhh
Q 022619          279 LAK  281 (294)
Q Consensus       279 L~~  281 (294)
                      ++.
T Consensus       154 L~n  156 (748)
T PRK11061        154 LSQ  156 (748)
T ss_pred             HHH
Confidence            865

>TIGR01817 nifA Nif-specific regulatory protein

Probab=93.43  E-value=0.98  Score=45.69  Aligned_cols=79  Identities=10%  Similarity=0.143  Sum_probs=60.4

Q ss_pred             hhHHHHHhhccCceecccccccCCCCC-CCCCCCCCCeeEEEecCCC----eEEEEecCC-CcccChhhHHHHHHHHHHH
Q 022619          202 GSVYLGVMRSKAQRYLANLLLYPGRSE-LPFLPSNTQAVILQPLGDK----GIAIIGGDT-IRGFTTSDQSWIAFIGEKL  275 (294)
Q Consensus       202 G~I~~r~~~~~~~iyL~nl~lyPGr~E-f~~LP~ntqsVlvQPig~~----Gvlvlgs~s-~R~FT~kDe~WI~~iA~KL  275 (294)
                      -.+|.++.++++++.+.|...-|-... ......+++++||.||..+    |+|.+.+.. ++.||+.|...+..+|+.+
T Consensus        73 ~gi~g~v~~~~~pvii~Dv~~d~~~~~~~~~~~~~~~S~l~VPL~~~g~viGvL~v~s~~~~~~ft~~d~~lL~~lA~~i  152 (534)
T TIGR01817        73 EGAIGQIVATGNSLVVPDVAAEPLFLDRLSLYDPGPVPFIGVPIKADSETIGVLAADRDFRSRERLEEEVRFLEMVANLI  152 (534)
T ss_pred             ccHHHHHHhcCCeEEecccccCchhhhccccccCCcceEEEEEEcCCCEEEEEEEEEeccccccccHHHHHHHHHHHHHH
Confidence            467889999999999999865443211 1233567899999999654    577777764 5788999999999999998


Q ss_pred             HHHHh
Q 022619          276 DATLA  280 (294)
Q Consensus       276 ~~tL~  280 (294)
                      ...+.
T Consensus       153 a~aI~  157 (534)
T TIGR01817       153 GQTVR  157 (534)
T ss_pred             HHHHH
Confidence            87763

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>TIGR02851 spore_V_T stage V sporulation protein T

Probab=92.37  E-value=2.4  Score=38.00  Aligned_cols=116  Identities=10%  Similarity=-0.016  Sum_probs=78.5

Q ss_pred             HHHhHHHHHHHHhhhccccEEEEEECCeEEEEEeeccCCCCCccchhhcccccchhhHHHHHhhccCceeccccc--ccC
Q 022619          147 VVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLL--LYP  224 (294)
Q Consensus       147 ~k~ELAWas~~LLtnT~a~svlV~~~G~vllrRG~~~~~~~~g~a~~~d~~~~~pG~I~~r~~~~~~~iyL~nl~--lyP  224 (294)
                      ..+...=.-+.|...|.+ +|.|..+.+++...|.-...-..+        .  --+..+++|++++.....+..  +|+
T Consensus        54 ~~~~A~~~aeII~~~t~~-aVaITDr~~ILA~~G~g~d~~~~~--------~--is~~t~~~i~~gk~~~~~~~~~~~i~  122 (180)
T TIGR02851        54 LGDFAKEYAESLYQSLGH-IVLITDRDTVIAVAGVSKKEYLNK--------P--ISDELEDTMEERKTVILSDTKDGPIE  122 (180)
T ss_pred             hHHHHHHHHHHHHHHhCC-EEEEECCCcEEEEECCChhhcCCC--------c--cCHHHHHHHHcCCEEEecCCccceec
Confidence            444445567899999999 999999999998888664421111        1  123467889988877666532  122


Q ss_pred             CCCCCCCCCCC--CCeeEEEecCCC----eEEEEecCCCc--ccChhhHHHHHHHHHHHHHHH
Q 022619          225 GRSELPFLPSN--TQAVILQPLGDK----GIAIIGGDTIR--GFTTSDQSWIAFIGEKLDATL  279 (294)
Q Consensus       225 Gr~Ef~~LP~n--tqsVlvQPig~~----Gvlvlgs~s~R--~FT~kDe~WI~~iA~KL~~tL  279 (294)
                      =.   .  -++  ..+.++.||-.+    |.|.+- ...+  .||+.++.+..++|+=|..-|
T Consensus       123 c~---~--~~~~~l~s~ii~Pl~~~g~viGtLkly-~k~~~~~~~~~e~~la~glA~lLS~QL  179 (180)
T TIGR02851       123 II---D--GQEFEYTSQVIAPIIAEGDPIGAVIIF-SKEPGEKLGEVEQKAAETAAAFLGKQM  179 (180)
T ss_pred             cc---c--CCCCCcceEEEEEEEECCeEEEEEEEE-ECCccCCCCHHHHHHHHHHHHHHHHhh
Confidence            11   0  122  568999999543    445555 5666  999999999999998877644

Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See PFAM model pfam04014).

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=90.27  E-value=3.3  Score=43.38  Aligned_cols=82  Identities=21%  Similarity=0.243  Sum_probs=62.9

Q ss_pred             chhhHHHHHhhccCceeccccc---ccC-CCCCCCCCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHH
Q 022619          200 KQGSVYLGVMRSKAQRYLANLL---LYP-GRSELPFLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFI  271 (294)
Q Consensus       200 ~pG~I~~r~~~~~~~iyL~nl~---lyP-Gr~Ef~~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~i  271 (294)
                      ..|.+..+++++++++.+.+..   +.+ ++..++....++.++|+.|+..    -|+|.+++...+.||++|..-++.+
T Consensus       254 ~~~~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~v~GvL~l~~~~~~~F~~~dl~lL~~i  333 (686)
T PRK15429        254 EAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLKLLRQI  333 (686)
T ss_pred             cccchHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEeEEECCEEEEEEEEeeCCCCcCCHHHHHHHHHH
Confidence            3457888999999988775432   111 2233455567899999999843    5899998888899999999999999


Q ss_pred             HHHHHHHHhh
Q 022619          272 GEKLDATLAK  281 (294)
Q Consensus       272 A~KL~~tL~~  281 (294)
                      |+....+++.
T Consensus       334 A~~~A~Aie~  343 (686)
T PRK15429        334 AERVAIAVDN  343 (686)
T ss_pred             HHHHHHHHHH
Confidence            9999988854

>COG1956 GAF domain-containing protein [Signal transduction mechanisms]

Probab=89.78  E-value=1.5  Score=39.27  Aligned_cols=74  Identities=16%  Similarity=0.244  Sum_probs=62.5

Q ss_pred             hHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecCCCe----EEEEecCCCcccChhhHHHHHHHHHHHHHH
Q 022619          203 SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGDKG----IAIIGGDTIRGFTTSDQSWIAFIGEKLDAT  278 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig~~G----vlvlgs~s~R~FT~kDe~WI~~iA~KL~~t  278 (294)
                      -+|..+-++++.+=.-|..-|||-++=|   +.++|=||.|+-.+|    +|=+=|.++=.||+.||.|++.+|+-|...
T Consensus        83 GVCg~A~~~~~t~~V~DV~~~~ghiaCD---~as~SEIVvPi~~~g~~iGvlDiDS~~~~~Fd~~D~~~Le~~~~~l~~~  159 (163)
T COG1956          83 GVCGTAAATGETVRVDDVHAFPGHIACD---AASNSEIVVPIFKDGKLIGVLDIDSPTPGRFDEEDEAGLEKLAALLEKS  159 (163)
T ss_pred             chhHHHHhcCCeEEecccccCCCccccc---cccCceEEEEEEECCEEEEEEecCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence            3688888999999999999999988776   468899999996654    555678888899999999999999888765


Q ss_pred             H
Q 022619          279 L  279 (294)
Q Consensus       279 L  279 (294)
                      +
T Consensus       160 ~  160 (163)
T COG1956         160 L  160 (163)
T ss_pred             h
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
1vhm_A	195	Protein YEBR; structural genomics, unknown functio	97.61
3ksh_A	160	Putative uncharacterized protein; FRMSR, free-Met-	97.44
3rfb_A	171	Putative uncharacterized protein; FRMSR, GAF, oxid	97.34
2w3g_A	153	DOSS, two component sensor histidine kinase DEVS (	97.32
3p01_A	184	Two-component response regulator; PSI-2, midwest c	97.24
3mmh_A	167	FRMSR, methionine-R-sulfoxide reductase; oxidoredu	97.21
3ci6_A	171	Phosphoenolpyruvate-protein phosphotransferase; PE	97.2
3trc_A	171	Phosphoenolpyruvate-protein phosphotransferase; si	97.11
3e0y_A	181	Conserved domain protein; APC87688.2, geobacter su	96.96
2qyb_A	181	Membrane protein, putative; GAF domain, domain of	96.87
1f5m_A	180	GAF; CGMP binding, signaling protein; 1.90A {Sacch	96.79
2zmf_A	189	CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho	96.69
3o5y_A	165	Sensor protein; GAF domain, histidine, kinase, PSI	96.66
3k2n_A	177	Sigma-54-dependent transcriptional regulator; PSI-	96.63
2vjw_A	149	GAF-B, GAF family protein; histidine kinase, hypox	96.59
3oov_A	169	Methyl-accepting chemotaxis protein, putative; str	96.57
3hcy_A	151	Putative two-component sensor histidine kinase PR;	96.3
2e4s_A	189	CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod	96.12
1mc0_A	368	3',5'-cyclic nucleotide phosphodiesterase 2A; GAF	94.91
3dba_A	180	CONE CGMP-specific 3',5'-cyclic phosphodiesterase	94.63
3ibj_A	691	CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE	94.11
1ykd_A	398	Adenylate cyclase; GAF domain, bound cyclic AMP li	93.28
2k2n_A	172	Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do	93.17
4glq_A	171	Methyl-accepting chemotaxis protein; chromophore,	93.0
2lb5_A	208	Sensor histidine kinase; PCB, transferase, GAF dom	92.96
1ykd_A	398	Adenylate cyclase; GAF domain, bound cyclic AMP li	91.6
1mc0_A	368	3',5'-cyclic nucleotide phosphodiesterase 2A; GAF	88.81
2w1r_A	123	Spovt, stage V sporulation protein T; regulatory G	84.72
3ibj_A	691	CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE	82.48
3cit_A	160	Sensor histidine kinase; MEGA: 3.30.450.40, struct	82.16

>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1

Probab=97.61  E-value=0.0014  Score=57.16  Aligned_cols=81  Identities=17%  Similarity=0.271  Sum_probs=69.0

Q ss_pred             ccchh-hHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHH
Q 022619          198 KLKQG-SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIG  272 (294)
Q Consensus       198 ~~~pG-~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA  272 (294)
                      .+..| -+|.++.++++++.+.|..-+|+....+   .+++|.||.||-.    -|||-+.+..++.||+.|+..++.+|
T Consensus        88 ~i~~GeGi~G~aa~tg~~i~V~Dv~~~p~~~~~~---~~~~S~l~VPI~~~g~viGVL~i~s~~~~~F~e~d~~~L~~lA  164 (195)
T 1vhm_A           88 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD---AASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLV  164 (195)
T ss_dssp             EEETTSHHHHHHHHHTSCEEESCTTTCTTCCCSC---CCCSEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHH
T ss_pred             EecCCCChHHHHHhcCCEEEECCcccCcchhhcC---CCccEEEEEeEeECCEEEEEEEecCCCCCCCCHHHHHHHHHHH
Confidence            34444 3789999999999999999999865543   4789999999954    38999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 022619          273 EKLDATLAK  281 (294)
Q Consensus       273 ~KL~~tL~~  281 (294)
                      +-+..+++.
T Consensus       165 ~~ia~ale~  173 (195)
T 1vhm_A          165 AQLEKVLAT  173 (195)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999999873

>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*

Probab=97.44  E-value=0.00043  Score=59.04  Aligned_cols=78  Identities=18%  Similarity=0.321  Sum_probs=66.0

Q ss_pred             cchh-hHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEec--CC--CeEEEEecCCCcccChhhHHHHHHHHH
Q 022619          199 LKQG-SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPL--GD--KGIAIIGGDTIRGFTTSDQSWIAFIGE  273 (294)
Q Consensus       199 ~~pG-~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPi--g~--~Gvlvlgs~s~R~FT~kDe~WI~~iA~  273 (294)
                      +..| -+|.++.++++++.+.|..-+|+....+   +.++|.||.||  ++  =|||-+.+..++.|++.|+.+++.+|+
T Consensus        77 i~~GeGv~G~aa~~~~~i~V~Dv~~~p~~i~~~---~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~  153 (160)
T 3ksh_A           77 IPIGKGVCGTAVSERRTQVVADVHQFKGHIACD---ANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEHLEAIVK  153 (160)
T ss_dssp             EETTSHHHHHHHHHTSCEEESCGGGSTTCCGGG---TTCSEEEEEEEEETTEEEEEEEEEESSSSCCCHHHHHHHHHHHH
T ss_pred             eeCCCCHHHHHHhhCCEEEECCcccCccccccC---cccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            4443 4799999999999999999999854432   46899999999  33  389999999999999999999999999


Q ss_pred             HHHHHH
Q 022619          274 KLDATL  279 (294)
Q Consensus       274 KL~~tL  279 (294)
                      -+...+
T Consensus       154 ~la~~~  159 (160)
T 3ksh_A          154 IIEKQL  159 (160)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988765

>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}

Probab=97.34  E-value=0.0006  Score=58.89  Aligned_cols=79  Identities=13%  Similarity=0.180  Sum_probs=67.1

Q ss_pred             cchh-hHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEec--CC--CeEEEEecCCCcccChhhHHHHHHHHH
Q 022619          199 LKQG-SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPL--GD--KGIAIIGGDTIRGFTTSDQSWIAFIGE  273 (294)
Q Consensus       199 ~~pG-~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPi--g~--~Gvlvlgs~s~R~FT~kDe~WI~~iA~  273 (294)
                      +..| -||.++.++++++.+.|..-+|+....+   +.++|.||.||  ++  =|||-+.+..++.||+.|+.+++.+|+
T Consensus        78 i~~GeGv~G~va~tg~~i~V~Dv~~~p~~i~~~---~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~  154 (171)
T 3rfb_A           78 IALGKGVCGEAAHFQETVIVGDVTTYLNYISCD---SLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYLEQFVA  154 (171)
T ss_dssp             EETTSHHHHHHHHTTSCEEESCTTSCSSCCCSC---TTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHH
T ss_pred             eeCCcCHHHHHHhhCCEEEECCcccCccccccC---cccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            4443 4799999999999999999999865433   47899999999  33  389999999999999999999999999


Q ss_pred             HHHHHHh
Q 022619          274 KLDATLA  280 (294)
Q Consensus       274 KL~~tL~  280 (294)
                      -+..++.
T Consensus       155 ~la~~~~  161 (171)
T 3rfb_A          155 ILLEKTT  161 (171)
T ss_dssp             HHHHSCB
T ss_pred             HHHHHhc
Confidence            9988763

>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*

Probab=97.32  E-value=0.0012  Score=50.24  Aligned_cols=79  Identities=13%  Similarity=0.144  Sum_probs=64.7

Q ss_pred             hHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecCC----CeEEEEecCCC-cccChhhHHHHHHHHHHHHH
Q 022619          203 SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGD----KGIAIIGGDTI-RGFTTSDQSWIAFIGEKLDA  277 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig~----~Gvlvlgs~s~-R~FT~kDe~WI~~iA~KL~~  277 (294)
                      .++.+++++++++++.|..--|....+.....+.+++++.||-.    -|+|.+.+..+ |.||+.|...++.+|+.+..
T Consensus        62 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~~~~~l~~la~~~a~  141 (153)
T 2w3g_A           62 GVIGLLIEDPKPLRLDDVSAHPASIGFPPYHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGI  141 (153)
T ss_dssp             THHHHHHHSCSCEEESSGGGSTTCCCCCTTCCCCCCEEEEEEEETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHhcCCcEEecCcccCchhcCCCCcCCCCCeEEEeeEEECCEEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            46889999999999998765544333333557889999999943    47999999888 89999999999999999998


Q ss_pred             HHhh
Q 022619          278 TLAK  281 (294)
Q Consensus       278 tL~~  281 (294)
                      .++.
T Consensus       142 ai~~  145 (153)
T 2w3g_A          142 AVAN  145 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8865

>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}

Probab=97.24  E-value=0.0019  Score=52.38  Aligned_cols=81  Identities=11%  Similarity=0.157  Sum_probs=64.2

Q ss_pred             hhhHHHHHhhccCceecccccccCCCCCCC-CCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHH
Q 022619          201 QGSVYLGVMRSKAQRYLANLLLYPGRSELP-FLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKL  275 (294)
Q Consensus       201 pG~I~~r~~~~~~~iyL~nl~lyPGr~Ef~-~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL  275 (294)
                      ..+++.+++++++++.+.|..--|.-.+-+ +-..+.+++++.||-.    -|+|.+.+..+|.||+.|...++.+|+.+
T Consensus        94 ~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~~~~~~f~~~d~~ll~~lA~q~  173 (184)
T 3p01_A           94 QDPLTNEAIATGQIQVAANIAKDPKLASISQYQDNGIQSHVVIPITYRNEMLGVLSLQWQQPISLREDELTLIHLSAQLV  173 (184)
T ss_dssp             GCHHHHHHHHHCSCEEESCGGGCHHHHTCHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHhhCCeEEEeccccCccccchhHHHHhCccEEEEEEEEECCEEEEEEEeCcCCCCCCCHHHHHHHHHHHHHH
Confidence            367889999999999988876544111111 1223899999999943    58999999999999999999999999999


Q ss_pred             HHHHhh
Q 022619          276 DATLAK  281 (294)
Q Consensus       276 ~~tL~~  281 (294)
                      ..+++.
T Consensus       174 aiAi~n  179 (184)
T 3p01_A          174 AIALTS  179 (184)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0

Probab=97.21  E-value=0.0011  Score=56.24  Aligned_cols=77  Identities=13%  Similarity=0.167  Sum_probs=66.5

Q ss_pred             hHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHHH
Q 022619          203 SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDAT  278 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~t  278 (294)
                      -+|.++.++++++.+.|..-+|+....+   .+++|.+|.||-.    =|||-+.+..++.||+.|+..++.+|+-+..+
T Consensus        83 Gi~G~v~~~g~~~~v~Dv~~~p~~~~~~---~~~~S~i~vPi~~~g~viGVL~i~s~~~~~F~~~d~~~L~~lA~~la~~  159 (167)
T 3mmh_A           83 GVCGQAWAKGGTVVVGDVDAHPDHIACS---SLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYLGELAKILEKR  159 (167)
T ss_dssp             HHHHHHHHHTSCEEESCGGGSTTCCCSS---TTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHhCCcEEEECCcccCcchhhcC---ccCCeEEEEEeccCCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999854433   5799999999943    47999999999999999999999999999988


Q ss_pred             Hhhc
Q 022619          279 LAKY  282 (294)
Q Consensus       279 L~~~  282 (294)
                      +.-+
T Consensus       160 i~~~  163 (167)
T 3mmh_A          160 FEAS  163 (167)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7643

>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}

Probab=97.20  E-value=0.0076  Score=45.85  Aligned_cols=79  Identities=14%  Similarity=0.120  Sum_probs=61.5

Q ss_pred             hHHHHHhhccCceecccccccCCCCCCC-CCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHH
Q 022619          203 SVYLGVMRSKAQRYLANLLLYPGRSELP-FLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDA  277 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~-~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~  277 (294)
                      .++.++++++++++..|..--|....+. +-..+..++++.||-.    -|+|.+++..++.||+.|...++.+|+.+..
T Consensus        80 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a~  159 (171)
T 3ci6_A           80 GLVGLVGQREEIVNLENASKHERFAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKQPQDFSEAAESFLVTLCAQLSG  159 (171)
T ss_dssp             HHHHHHHHHTSCEEESSGGGSTTC---------CCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CeehhhhccCceEEecCCCcCcchhccccccccccceEEEEeEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence            4788999999999999876555433332 2556789999999943    4799999999999999999999999999998


Q ss_pred             HHhh
Q 022619          278 TLAK  281 (294)
Q Consensus       278 tL~~  281 (294)
                      .++.
T Consensus       160 al~~  163 (171)
T 3ci6_A          160 VIAH  163 (171)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}

Probab=97.11  E-value=0.01  Score=45.90  Aligned_cols=79  Identities=18%  Similarity=0.196  Sum_probs=64.2

Q ss_pred             hHHHHHhhccCceecccccccCCCCCCC-CCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHH
Q 022619          203 SVYLGVMRSKAQRYLANLLLYPGRSELP-FLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDA  277 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~-~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~  277 (294)
                      .++.++.++++++++.|..--|....+. .-..+..++++.||-.    -|++.+++..++.||+.|...++.+|+.+..
T Consensus        78 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~~~~~~f~~~d~~~l~~la~~~a~  157 (171)
T 3trc_A           78 GLIGLVGEREEPINLADAPLHPAYKHRPELGEEDYHGFLGIPIIEQGELLGILVIQQLESHHFAEEEEAFCVTLAIHLAA  157 (171)
T ss_dssp             HHHHHHHHHTSCEEESCGGGSTTCCCCGGGCCCCCCEEEEEEEEETTEEEEEEEEEESSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             ChhhHHHhcCCeEEeCCCCCCCcccccccCCcccccEEEEEeEEECCEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHH
Confidence            5688899999999999886544333222 1236889999999943    5799999999999999999999999999999


Q ss_pred             HHhh
Q 022619          278 TLAK  281 (294)
Q Consensus       278 tL~~  281 (294)
                      .++.
T Consensus       158 ai~~  161 (171)
T 3trc_A          158 EIAH  161 (171)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}

Probab=96.96  E-value=0.0017  Score=50.64  Aligned_cols=79  Identities=16%  Similarity=0.275  Sum_probs=61.1

Q ss_pred             hHHHHHhhccCceecccccccCCCCCCC-CCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHH
Q 022619          203 SVYLGVMRSKAQRYLANLLLYPGRSELP-FLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDA  277 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~-~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~  277 (294)
                      .+|.+++++++++++.|..--|.....+ ....+.+++++.||-.    -|+|.+.+..++.||+.|...++.+|+.+..
T Consensus        83 ~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~~l~~la~~~a~  162 (181)
T 3e0y_A           83 GITGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFVSIIANLILT  162 (181)
T ss_dssp             SSHHHHHHHCCCEEEEEECCCCCC---------CEEEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CeeeehhhcCCeEEecCcccCccccccccccccCcceEEEEEEEeCCeEEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHH
Confidence            3678899999999999886544432221 2235789999999954    4799999999999999999999999999998


Q ss_pred             HHhh
Q 022619          278 TLAK  281 (294)
Q Consensus       278 tL~~  281 (294)
                      +++.
T Consensus       163 al~~  166 (181)
T 3e0y_A          163 AIKL  166 (181)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}

Probab=96.87  E-value=0.0014  Score=52.16  Aligned_cols=79  Identities=8%  Similarity=0.069  Sum_probs=64.8

Q ss_pred             hHHHHHhhccCceecccccccCCCCCC--CCCCCCCCeeEEEecC--CC---eEEEEec-CCCcccChhhHHHHHHHHHH
Q 022619          203 SVYLGVMRSKAQRYLANLLLYPGRSEL--PFLPSNTQAVILQPLG--DK---GIAIIGG-DTIRGFTTSDQSWIAFIGEK  274 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef--~~LP~ntqsVlvQPig--~~---Gvlvlgs-~s~R~FT~kDe~WI~~iA~K  274 (294)
                      .+|.++++++++++..|....|. ..+  .+...|..++++.||.  ++   |+|.+.+ ..++.||+.|...++.+|+-
T Consensus        73 ~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~la~~  151 (181)
T 2qyb_A           73 TYIGEAFLSNRLQFVNDTQYMTK-PLTRELMQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLESLAGQ  151 (181)
T ss_dssp             SHHHHHHHHTSCEEESCGGGCSC-HHHHHHHHHTTCCEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHHHHHH
T ss_pred             CchhhhhhcCCCEEecChhcCCc-hhhHHHHHhcCcceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999876653 111  1224579999999983  44   8999999 89999999999999999999


Q ss_pred             HHHHHhhc
Q 022619          275 LDATLAKY  282 (294)
Q Consensus       275 L~~tL~~~  282 (294)
                      +...+++.
T Consensus       152 ~a~al~~a  159 (181)
T 2qyb_A          152 LAQAVKIV  159 (181)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99998764

>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*

Probab=96.79  E-value=0.0049  Score=52.31  Aligned_cols=73  Identities=18%  Similarity=0.317  Sum_probs=63.8

Q ss_pred             HHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecCC-C----eEEEEecCCCcccChhhHHHHHHHHHHHHHH
Q 022619          204 VYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGD-K----GIAIIGGDTIRGFTTSDQSWIAFIGEKLDAT  278 (294)
Q Consensus       204 I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig~-~----Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~t  278 (294)
                      +|.++.++++.+.+.|..-+|+...   ...+++|.+|.||-. +    |||-+.+..++.||+.|+..++.+|+-+..+
T Consensus       100 i~G~aa~~g~~v~v~Dv~~dp~~~~---~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~~F~~~d~~~L~~la~~~a~~  176 (180)
T 1f5m_A          100 VCGTAASTKETQIVPDVNKYPGHIA---CDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLAKLINKS  176 (180)
T ss_dssp             HHHHHHHHTSCEEESCGGGSTTCCC---SSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhcCCEEEeCCcccCccccc---cCcccceEEEEEEEcCCCeEEEEEEeccCCCCCcCHHHHHHHHHHHHHHHHh
Confidence            6899999999999999998887543   346899999999965 2    8999999999999999999999999998876


Q ss_pred             H
Q 022619          279 L  279 (294)
Q Consensus       279 L  279 (294)
                      +
T Consensus       177 ~  177 (180)
T 1f5m_A          177 C  177 (180)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}

Probab=96.69  E-value=0.013  Score=45.98  Aligned_cols=79  Identities=11%  Similarity=0.108  Sum_probs=60.8

Q ss_pred             hHHHHHhhccCceecccccccCCCCCC--CCCCCCCCeeEEEecCC----CeEEEE-ecCCCcccChhhHHHHHHHHHHH
Q 022619          203 SVYLGVMRSKAQRYLANLLLYPGRSEL--PFLPSNTQAVILQPLGD----KGIAII-GGDTIRGFTTSDQSWIAFIGEKL  275 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef--~~LP~ntqsVlvQPig~----~Gvlvl-gs~s~R~FT~kDe~WI~~iA~KL  275 (294)
                      .++.++.++++++.+.|...-|.....  .....++++++|.|+-.    -|++.+ ....+|.||+.|...++.+|+.+
T Consensus        91 ~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~d~~ll~~lA~q~  170 (189)
T 2zmf_A           91 GIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENNFKMFAVFC  170 (189)
T ss_dssp             HHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhCCeEEEecccccccccccchhhcccccceEEEeeecccCceeeEEEEEEcCCCCCcCHHHHHHHHHHHHHH
Confidence            467889999999999988765544333  22334688999999844    356644 56778999999999999999999


Q ss_pred             HHHHhh
Q 022619          276 DATLAK  281 (294)
Q Consensus       276 ~~tL~~  281 (294)
                      ...++.
T Consensus       171 a~Ai~n  176 (189)
T 2zmf_A          171 ALALHC  176 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988865

>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}

Probab=96.66  E-value=0.05  Score=45.12  Aligned_cols=79  Identities=11%  Similarity=0.234  Sum_probs=60.9

Q ss_pred             hhHHHHHhhccCceecccccccCCCCCC-C-CCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHH
Q 022619          202 GSVYLGVMRSKAQRYLANLLLYPGRSEL-P-FLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKL  275 (294)
Q Consensus       202 G~I~~r~~~~~~~iyL~nl~lyPGr~Ef-~-~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL  275 (294)
                      +.++.++.++++.+-+ |..--|.+--. . +...+.+|++|.||-.    -|+|.+++..++.||+.|..+++.+|+.+
T Consensus        59 ~s~~~~v~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~~~~~~f~~~d~~~l~~la~~~  137 (165)
T 3o5y_A           59 QSLYWSALDQRQTIFR-SLTDTQDNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGRKQQIDWSLDDLAFLEQLTDHL  137 (165)
T ss_dssp             TCHHHHHHHHTSCEEE-ESCCTTCCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHhCCeEEE-cCcccccccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            4788999999999863 43222211101 1 2356899999999943    57999999999999999999999999999


Q ss_pred             HHHHhh
Q 022619          276 DATLAK  281 (294)
Q Consensus       276 ~~tL~~  281 (294)
                      ...++.
T Consensus       138 aiai~n  143 (165)
T 3o5y_A          138 AVSIEN  143 (165)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            998875

>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}

Probab=96.63  E-value=0.0021  Score=50.69  Aligned_cols=79  Identities=10%  Similarity=0.149  Sum_probs=61.8

Q ss_pred             hhHHHHHhhccCceecccccccCCCCCCC-------CCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHH
Q 022619          202 GSVYLGVMRSKAQRYLANLLLYPGRSELP-------FLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAF  270 (294)
Q Consensus       202 G~I~~r~~~~~~~iyL~nl~lyPGr~Ef~-------~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~  270 (294)
                      +.++.+++++++.+.. |..-.+.+....       ....|++++++.||-.    -|+|.+.+..++.||+.|...++.
T Consensus        77 ~~~~~~v~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~iGvL~l~~~~~~~f~~~d~~ll~~  155 (177)
T 3k2n_A           77 GTWLEGHLDDRTVTVA-SIARDIPSFGADGAPLLWTLHELGMRQIVLSPLRSGGRVIGFLSFVSAEEKLWSDGDKSLLSG  155 (177)
T ss_dssp             TSGGGGGTTCCSCEEE-ETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHH
T ss_pred             ccHHHHHhccCCceEe-chhhcccccCCcchhHHHHHHHcCceEEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHH
Confidence            4567888888888877 765422222222       3456899999999943    589999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 022619          271 IGEKLDATLAK  281 (294)
Q Consensus       271 iA~KL~~tL~~  281 (294)
                      +|+.+..+++.
T Consensus       156 lA~~~a~Ai~n  166 (177)
T 3k2n_A          156 VSSSIAIAVSN  166 (177)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988865

>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A

Probab=96.59  E-value=0.0042  Score=50.35  Aligned_cols=70  Identities=16%  Similarity=0.129  Sum_probs=60.6

Q ss_pred             hhHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecCC----CeEEEEecC-CCcccChhhHHHHHHHHHHHH
Q 022619          202 GSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGD----KGIAIIGGD-TIRGFTTSDQSWIAFIGEKLD  276 (294)
Q Consensus       202 G~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig~----~Gvlvlgs~-s~R~FT~kDe~WI~~iA~KL~  276 (294)
                      +.++.+++++++++.+.|..--|          ++.++||.||..    -|+|.+... .++.||+.|..-++.+|+...
T Consensus        60 ~g~~g~v~~~g~~v~v~d~~~d~----------~~~s~l~vPL~~~~~~~GvL~l~~~~~~~~f~~~d~~ll~~lA~~aa  129 (149)
T 2vjw_A           60 DNAIGQAFRDRAPRRLDVLDGPG----------LGGPALVLPLRATDTVAGVLVAVQGSGARPFTAEQLEMMTGFADQAA  129 (149)
T ss_dssp             SSHHHHHHHHCCCEEESCCCTTS----------CEEEEEEEEEEETTEEEEEEEEEEETTCCCCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHhhcCceEEecCcccCC----------CCCeEEEEEEccCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Confidence            46788999999999999986544          789999999954    489999988 889999999999999999988


Q ss_pred             HHHhh
Q 022619          277 ATLAK  281 (294)
Q Consensus       277 ~tL~~  281 (294)
                      ..++.
T Consensus       130 ~al~~  134 (149)
T 2vjw_A          130 VAWQL  134 (149)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}

Probab=96.57  E-value=0.035  Score=42.75  Aligned_cols=80  Identities=11%  Similarity=0.282  Sum_probs=63.3

Q ss_pred             hhHHHHHhhccCceecccccccCCCCC----C-CCCCCCCCeeEEEecCC----CeEEEEecCCC-cccChhhHHHHHHH
Q 022619          202 GSVYLGVMRSKAQRYLANLLLYPGRSE----L-PFLPSNTQAVILQPLGD----KGIAIIGGDTI-RGFTTSDQSWIAFI  271 (294)
Q Consensus       202 G~I~~r~~~~~~~iyL~nl~lyPGr~E----f-~~LP~ntqsVlvQPig~----~Gvlvlgs~s~-R~FT~kDe~WI~~i  271 (294)
                      ..++.+++++++++++.|..-.|....    . ..-..+.+++++.||-.    -|+|.+++..+ +.||+.|...++.+
T Consensus        73 ~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~~f~~~d~~~l~~~  152 (169)
T 3oov_A           73 GGVITKCFTDRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVDNRSSRRSLNDTDVDTIKLF  152 (169)
T ss_dssp             GHHHHHHHHHTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEECTTSSSCCCHHHHHHHHHH
T ss_pred             cchHHHHHhcCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEEccccCCCCCHHHHHHHHHH
Confidence            467889999999999998876654321    1 12346889999999944    47899988665 56999999999999


Q ss_pred             HHHHHHHHhh
Q 022619          272 GEKLDATLAK  281 (294)
Q Consensus       272 A~KL~~tL~~  281 (294)
                      |+.+..+++.
T Consensus       153 a~~~a~ai~n  162 (169)
T 3oov_A          153 ADQASSAIVR  162 (169)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988865

>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}

Probab=96.30  E-value=0.0014  Score=50.80  Aligned_cols=78  Identities=15%  Similarity=0.114  Sum_probs=60.5

Q ss_pred             HHHHHhhccCceecccccccCCCCCC--CCCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHH
Q 022619          204 VYLGVMRSKAQRYLANLLLYPGRSEL--PFLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDA  277 (294)
Q Consensus       204 I~~r~~~~~~~iyL~nl~lyPGr~Ef--~~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~  277 (294)
                      +|.+++++++++++.|..--|....+  .....|.+++++.||-.    -|++.+....+|.||+.|...++.+|+.+..
T Consensus        56 ~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~ll~~~a~~~a~  135 (151)
T 3hcy_A           56 PWITGANEPEPIFVENVDDAEFSRELKESIVGEGIAALGFFPLVTEGRLIGKFMTYYDRPHRFADSEIGMALTIARQLGF  135 (151)
T ss_dssp             SCC---CCCCCEEESCGGGSCCCHHHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhcCCcEEEeChhhCcccchhHHHHHhcCchheEEeceEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence            46778899999999998765532222  23456889999999954    4688899999999999999999999999998


Q ss_pred             HHhh
Q 022619          278 TLAK  281 (294)
Q Consensus       278 tL~~  281 (294)
                      .+++
T Consensus       136 ai~~  139 (151)
T 3hcy_A          136 SIQR  139 (151)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8865

>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1

Probab=94.91  E-value=0.05  Score=48.26  Aligned_cols=79  Identities=11%  Similarity=0.035  Sum_probs=59.6

Q ss_pred             hHHHHHhhccCceecccccccCCCCCC-CC-CCCCCCeeEEEecCCC-----eEEEEecCCCc-ccChhhHHHHHHHHHH
Q 022619          203 SVYLGVMRSKAQRYLANLLLYPGRSEL-PF-LPSNTQAVILQPLGDK-----GIAIIGGDTIR-GFTTSDQSWIAFIGEK  274 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef-~~-LP~ntqsVlvQPig~~-----Gvlvlgs~s~R-~FT~kDe~WI~~iA~K  274 (294)
                      .++.++.++++++.+.|..--|..... +. ..-.++++++.||-.+     |+|.+....++ .||+.|...++.+|+-
T Consensus       251 ~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~d~~ll~~la~~  330 (368)
T 1mc0_A          251 GIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIY  330 (368)
T ss_dssp             HHHHHHHHHCCCEEESCSTTCTTCCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHHHHHHHHHHH
T ss_pred             ceeeeehhhCCEEEecCcccCcccchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence            468889999999999887643321111 00 0113689999999654     89999988885 8999999999999999


Q ss_pred             HHHHHhh
Q 022619          275 LDATLAK  281 (294)
Q Consensus       275 L~~tL~~  281 (294)
                      +...+++
T Consensus       331 ~a~ai~n  337 (368)
T 1mc0_A          331 CGISIAH  337 (368)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888764

>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}

Probab=94.63  E-value=0.048  Score=44.68  Aligned_cols=77  Identities=12%  Similarity=0.023  Sum_probs=58.0

Q ss_pred             hHHHHHhhccCceecccccccCCCCC-CCC-CCCCCCeeEEEecCC----CeEEEEecCCCc-ccChhhHHHHHHHHHHH
Q 022619          203 SVYLGVMRSKAQRYLANLLLYPGRSE-LPF-LPSNTQAVILQPLGD----KGIAIIGGDTIR-GFTTSDQSWIAFIGEKL  275 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~nl~lyPGr~E-f~~-LP~ntqsVlvQPig~----~Gvlvlgs~s~R-~FT~kDe~WI~~iA~KL  275 (294)
                      .|+.++.++++++.+.|..--|.... ++. .-..++|+||.||-.    =|||-+...... .||+.|+.-++.+|+-.
T Consensus        88 gi~g~v~~tg~~v~i~d~~~d~~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~~~~Ft~~d~~lL~~lA~~a  167 (180)
T 3dba_A           88 GIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEVFKKYLNFI  167 (180)
T ss_dssp             SHHHHHHHHTCCEEESCGGGCTTCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESSSSSCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCEEEecCCCCCcccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence            57889999999999999875442211 111 113579999999954    478888887765 99999999999999876


Q ss_pred             HHHH
Q 022619          276 DATL  279 (294)
Q Consensus       276 ~~tL  279 (294)
                      ...+
T Consensus       168 a~~i  171 (180)
T 3dba_A          168 SLVL  171 (180)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            6554

>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}

Probab=94.11  E-value=0.36  Score=48.15  Aligned_cols=80  Identities=11%  Similarity=0.058  Sum_probs=60.3

Q ss_pred             hhHHHHHhhccCceecccccccCCCC-CCC-CCCCCCCeeEEEecCCC-----eEEEEecCCCc-ccChhhHHHHHHHHH
Q 022619          202 GSVYLGVMRSKAQRYLANLLLYPGRS-ELP-FLPSNTQAVILQPLGDK-----GIAIIGGDTIR-GFTTSDQSWIAFIGE  273 (294)
Q Consensus       202 G~I~~r~~~~~~~iyL~nl~lyPGr~-Ef~-~LP~ntqsVlvQPig~~-----Gvlvlgs~s~R-~FT~kDe~WI~~iA~  273 (294)
                      ..++.++.++++++.+.|..--|... +.+ ..-.++++++|.||-.+     |||.+....++ .||+.|+.-++.+|+
T Consensus       250 ~gi~g~v~~~g~~v~i~d~~~d~~~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~~ll~~lA~  329 (691)
T 3ibj_A          250 QGIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSI  329 (691)
T ss_dssp             SHHHHHHHHHCSCEEESCSTTSTTC------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTTHHHHHHHH
T ss_pred             CCHHHHHHHhCCEEEecCcccCccccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence            35788999999999999876544321 111 11235789999999553     89999888776 799999999999999


Q ss_pred             HHHHHHhh
Q 022619          274 KLDATLAK  281 (294)
Q Consensus       274 KL~~tL~~  281 (294)
                      .+..+++.
T Consensus       330 ~~aiAIen  337 (691)
T 3ibj_A          330 YCGISIAH  337 (691)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98887754

>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}

Probab=93.28  E-value=0.092  Score=47.45  Aligned_cols=79  Identities=13%  Similarity=0.132  Sum_probs=60.2

Q ss_pred             hHHHHHhhccCceecc-cccccCCCCCC---C-CCCCCCCeeEEEecCC-C----eEEEEecCC----------------
Q 022619          203 SVYLGVMRSKAQRYLA-NLLLYPGRSEL---P-FLPSNTQAVILQPLGD-K----GIAIIGGDT----------------  256 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~-nl~lyPGr~Ef---~-~LP~ntqsVlvQPig~-~----Gvlvlgs~s----------------  256 (294)
                      .++.++.++++.+... |..--|.....   + .....+++++|.||-. +    |+|.+....                
T Consensus       268 ~~~~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~~~~~~~~~~~~~  347 (398)
T 1ykd_A          268 GFAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKKTGEFPPYNPETWPIA  347 (398)
T ss_dssp             HHHHHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEECCSSCCCCCCGGGTTCC
T ss_pred             chhhHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecCCccccccccccccccc
Confidence            4678889999999988 76544432111   0 0122489999999963 3    789888887                


Q ss_pred             ----CcccChhhHHHHHHHHHHHHHHHhh
Q 022619          257 ----IRGFTTSDQSWIAFIGEKLDATLAK  281 (294)
Q Consensus       257 ----~R~FT~kDe~WI~~iA~KL~~tL~~  281 (294)
                          ++.||+.|..-++.+|+.+...+++
T Consensus       348 ~~~~~~~f~~~d~~ll~~la~~~a~al~n  376 (398)
T 1ykd_A          348 PECFQASFDRNDEEFMEAFNIQAGVALQN  376 (398)
T ss_dssp             CGGGCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                8999999999999999999988865

>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*

Probab=93.17  E-value=0.18  Score=40.31  Aligned_cols=49  Identities=10%  Similarity=0.280  Sum_probs=43.9

Q ss_pred             CCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHHHHhh
Q 022619          233 PSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAK  281 (294)
Q Consensus       233 P~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~tL~~  281 (294)
                      ..+++|+|+.||-.    -|+|.+-...+|.||+.|...++.+|+.+..++++
T Consensus       115 ~~~~~s~l~vPi~~~~~l~G~l~~~~~~~~~~~~~e~~~l~~la~~~a~ai~~  167 (172)
T 2k2n_A          115 SMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQ  167 (172)
T ss_dssp             TTTCSEEEECCCSCSSCCCEEEEEEECSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCeEEEEEEEEECCEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999943    58999999999999999999999999999988875

>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*

Probab=93.00  E-value=0.15  Score=42.39  Aligned_cols=128  Identities=13%  Similarity=0.200  Sum_probs=80.6

Q ss_pred             HHhHHHHHHHHhhhccccEEEEE-EC----CeEEEEEeeccC-CCCCccchhhcccccchhhHHHHHhhccCceeccccc
Q 022619          148 VSELLWAWESLSAVTCCRSLVVV-YD----GIYLLQIGMAAE-SGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLL  221 (294)
Q Consensus       148 k~ELAWas~~LLtnT~a~svlV~-~~----G~vllrRG~~~~-~~~~g~a~~~d~~~~~pG~I~~r~~~~~~~iyL~nl~  221 (294)
                      .+=|.-+...+...+.+.-++|| ++    |+++.. -.-.. ++-.|...  ..+.| | +-+....++++.+.+.|..
T Consensus        13 ~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE-~~~~~~~s~lg~~~--~~~~~-~-~~~~~~~~~g~~~~I~Dv~   87 (171)
T 4glq_A           13 QAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAE-SVAEGWPQARDQVI--EDPCF-R-EHWVEAYRQGRIQATTDIF   87 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEE-EECTTSCCCTTCEE--CCTHH-H-HHTHHHHHTTCCEEESCGG
T ss_pred             HHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEE-EcCCCCccccCCcc--Ccccc-H-HHHHHHHHcCCEEEEcCcC
Confidence            34455667777788888888877 33    444432 11111 11111100  00111 1 2234567788888888765


Q ss_pred             ccCCCCCC--CC-CCCCCCeeEEEecC--C--CeEEEEec-CCCcccChhhHHHHHHHHHHHHHHHhh
Q 022619          222 LYPGRSEL--PF-LPSNTQAVILQPLG--D--KGIAIIGG-DTIRGFTTSDQSWIAFIGEKLDATLAK  281 (294)
Q Consensus       222 lyPGr~Ef--~~-LP~ntqsVlvQPig--~--~Gvlvlgs-~s~R~FT~kDe~WI~~iA~KL~~tL~~  281 (294)
                      . ++..+-  +| -.-|.+|.|+.||-  +  -|+|.+-. ..+|.||+.|..++..+|+.+..++.+
T Consensus        88 ~-~~~~~~~~~~l~~~~v~S~L~vPi~~~~~l~GlL~~~~~~~~r~w~~~ei~ll~~lA~ql~iAi~q  154 (171)
T 4glq_A           88 K-AGLTECHLNQLRPLKVRANLVVPMVIDDQLFGLLIAHQASEPRQWQEIEIDQFSELASTGSLVLER  154 (171)
T ss_dssp             G-TTCCHHHHHHHGGGTEEEEEEEEEEETTEEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-CCCCHHHHHHHHhcCCcEEEEEEEEECCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3 222211  22 25689999999983  3  57888877 689999999999999999999999876

>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*

Probab=92.96  E-value=0.14  Score=41.99  Aligned_cols=49  Identities=10%  Similarity=0.280  Sum_probs=43.6

Q ss_pred             CCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHHHHhh
Q 022619          233 PSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAK  281 (294)
Q Consensus       233 P~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~tL~~  281 (294)
                      ..|++|+||.||-.    -|+|.+-...+|.||+.|...++.+|+-+..++++
T Consensus       145 ~~~~~S~l~vPi~~~~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~  197 (208)
T 2lb5_A          145 SMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQ  197 (208)
T ss_dssp             HTTCSEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCcEEEEEEEEECCEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999943    47999999999999999999999999999988875

>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}

Probab=91.60  E-value=0.086  Score=47.64  Aligned_cols=79  Identities=15%  Similarity=0.095  Sum_probs=59.3

Q ss_pred             hHHHHHhhccCceecccccccCCCCCCC-CC----CCCCCeeEEEecCC-----CeEEEEecC---------------CC
Q 022619          203 SVYLGVMRSKAQRYLANLLLYPGRSELP-FL----PSNTQAVILQPLGD-----KGIAIIGGD---------------TI  257 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~-~L----P~ntqsVlvQPig~-----~Gvlvlgs~---------------s~  257 (294)
                      .+|..+.++++.+.+.|...-..+..|. .+    ..+++++++.||-.     -|+|.+...               .+
T Consensus        81 g~~g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~~~~~~~~~~~l~~~~~~  160 (398)
T 1ykd_A           81 GIAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNKLKPYSPPDALLAERIDN  160 (398)
T ss_dssp             HHHHHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEEBCSCCCTTCCHHHHBCT
T ss_pred             chhhhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEeccCCccccccccccccccc
Confidence            4788899999999998875421123331 11    24688999999953     378888877               78


Q ss_pred             cccChhhHHHHHHHHHHHHHHHhh
Q 022619          258 RGFTTSDQSWIAFIGEKLDATLAK  281 (294)
Q Consensus       258 R~FT~kDe~WI~~iA~KL~~tL~~  281 (294)
                      +.||+.|+.-++.+|+.+...++.
T Consensus       161 ~~f~~~d~~~l~~~a~~~~~al~~  184 (398)
T 1ykd_A          161 QGFTSADEQLFQEFAPSIRLILES  184 (398)
T ss_dssp             TCCCHHHHHHGGGTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888877753

>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1

Probab=88.81  E-value=0.46  Score=42.04  Aligned_cols=76  Identities=20%  Similarity=0.089  Sum_probs=55.2

Q ss_pred             HHHHHhhccCceecccccccCCCCCCC-CCCCCCCeeEEEecCCC------eEEEEecCCC-cccChhhHHHHHHHHHHH
Q 022619          204 VYLGVMRSKAQRYLANLLLYPGRSELP-FLPSNTQAVILQPLGDK------GIAIIGGDTI-RGFTTSDQSWIAFIGEKL  275 (294)
Q Consensus       204 I~~r~~~~~~~iyL~nl~lyPGr~Ef~-~LP~ntqsVlvQPig~~------Gvlvlgs~s~-R~FT~kDe~WI~~iA~KL  275 (294)
                      +|..+.++++++.+.|..--|- .+++ ..-.+++++++.||-.+      |+|.+.+..+ +.||+.|+.-+..+|+-+
T Consensus        82 ~~g~~~~~~~~~~i~d~~~~~~-~~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f~~~d~~~l~~la~~~  160 (368)
T 1mc0_A           82 RLGQVVEDKQCIQLKDLTSDDV-QQLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDEDEHVIQHCFHYT  160 (368)
T ss_dssp             SHHHHHHHCCCEEGGGSCHHHH-HHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCeEEecccccccc-cccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Confidence            6788999999999998764331 1111 01123899999999544      7787666554 579999999999999888


Q ss_pred             HHHHh
Q 022619          276 DATLA  280 (294)
Q Consensus       276 ~~tL~  280 (294)
                      ...+.
T Consensus       161 ~~al~  165 (368)
T 1mc0_A          161 GTVLT  165 (368)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77664

>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}

Probab=84.72  E-value=3.2  Score=33.10  Aligned_cols=110  Identities=8%  Similarity=0.096  Sum_probs=71.0

Q ss_pred             HHHHhhhccccEEEEEECCeEEEEEeeccCCCCCccchhhcccccchhhHHHHHhhccCceecccccccCCCCCCCCCCC
Q 022619          155 WESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPS  234 (294)
Q Consensus       155 s~~LLtnT~a~svlV~~~G~vllrRG~~~~~~~~g~a~~~d~~~~~pG~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~  234 (294)
                      .+.|...|.+ .|.|..+.+++-..|.-..       --.+ .+.  ++..+++|++++.++..|...++--.+-+   .
T Consensus         8 AeiI~~~~~~-aV~ItD~~~ilA~~G~g~~-------~~~~-~~i--s~~~~~~i~~~k~~~~~~~~~~~~~~~~~---~   73 (123)
T 2w1r_A            8 ADALYDSLGH-SVLICDRDVYIAVSGSSKK-------DYLN-KSI--SEMLERTMDQRSSVLESDAKSVQLVNGID---E   73 (123)
T ss_dssp             HHHHHHHHCS-EEEEECSSBEEEEESSCHH-------HHBT-CBB--CHHHHHHHHHCSCEEESSCEEEESBTTCE---E
T ss_pred             HHHHHHHHCC-eEEEEcCccEEEEEecChh-------hcCC-Ccc--CHHHHHHHHcCCEEEEcCCccccccCCCC---C
Confidence            4678889999 9999888888765663111       0011 122  45688899999999887665443322111   1


Q ss_pred             CCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHHHH
Q 022619          235 NTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATL  279 (294)
Q Consensus       235 ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~tL  279 (294)
                      ...+.++.||-.    -|.|.+- ...+.|++.++.-.+++|+-|..-+
T Consensus        74 ~~~s~ii~PI~~~g~viG~i~l~-~~~~~~~~~~~~la~gla~lls~Qm  121 (123)
T 2w1r_A           74 DMNSYTVGPIVANGDPIGAVVIF-SKDQTMGEVEHKAVETAAGFLARQM  121 (123)
T ss_dssp             EESEEEEEEEEETTEEEEEEEEE-ESSSCCCHHHHHHHHHHHHHHC---
T ss_pred             CeeEEEEEEEEECCEEEEEEEEE-EcCCCCCHHHHHHHHHHHHHHHHHh
Confidence            246889999843    4566666 4444599999998888887765543

>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}

Probab=82.48  E-value=0.54  Score=46.92  Aligned_cols=79  Identities=18%  Similarity=0.078  Sum_probs=55.8

Q ss_pred             hhHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecCCC------eEEEEecC-CCcccChhhHHHHHHHHHH
Q 022619          202 GSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGDK------GIAIIGGD-TIRGFTTSDQSWIAFIGEK  274 (294)
Q Consensus       202 G~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig~~------Gvlvlgs~-s~R~FT~kDe~WI~~iA~K  274 (294)
                      |.|+.++.++++++.+.|..--|-+.........+++++|.||-.+      |+|.+... .++.||+.|+.-+..+|.-
T Consensus        80 ~Gi~g~v~~~~~pv~i~d~~~~~~~~~~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~~d~~lL~~la~~  159 (691)
T 3ibj_A           80 TGCLGQVVEDKKSIQLKDLTSEDVQQLQSMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDEDEHVIQHCFHY  159 (691)
T ss_dssp             CSSSHHHHHHCCCEEGGGSCHHHHHHHHHHHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCTTHHHHHHHHHHH
T ss_pred             ccHHHHHHHHCCeEEeccchhccccccccccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence            3578889999999999988643311000111223899999999665      77776655 4468999999999998877


Q ss_pred             HHHHHh
Q 022619          275 LDATLA  280 (294)
Q Consensus       275 L~~tL~  280 (294)
                      +...+.
T Consensus       160 ~a~al~  165 (691)
T 3ibj_A          160 TSTVLT  165 (691)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666553

>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}

Probab=82.16  E-value=3  Score=35.83  Aligned_cols=47  Identities=21%  Similarity=0.318  Sum_probs=38.2

Q ss_pred             CCCeeEEEec-CCCe----EEEE-ecCCCcccChhhHHHHHHHHHHHHHHHhh
Q 022619          235 NTQAVILQPL-GDKG----IAII-GGDTIRGFTTSDQSWIAFIGEKLDATLAK  281 (294)
Q Consensus       235 ntqsVlvQPi-g~~G----vlvl-gs~s~R~FT~kDe~WI~~iA~KL~~tL~~  281 (294)
                      -|++|+|.|+ +.+|    ++++ -.-...+|++.|..=++.+|.-+...++.
T Consensus        95 ~t~svl~vPL~~~~g~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~a~aien  147 (160)
T 3cit_A           95 HLPCVLLLPLRGADEGSFGTLVLANSVAISAPDGEDIESLQLLATLLAAHLEN  147 (160)
T ss_dssp             SSCEEEEEEEECSSSSEEEEEEEEESSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeEEEeeecCCCcEEEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999 6654    5555 55555589999999999999999888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1vhma_	159	Hypothetical protein YebR {Escherichia coli [TaxId	97.92
d1f5ma_	176	Hypothetical protein ykl069wp {Baker's yeast (Sacc	97.6
d1mc0a1	187	3',5'-cyclic nucleotide phosphodiesterase 2A, GAF	93.62
d1mc0a2	154	3',5'-cyclic nucleotide phosphodiesterase 2A, GAF	93.4

>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: Hypothetical protein YebR
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=9.7e-05  Score=59.37  Aligned_cols=118  Identities=16%  Similarity=0.163  Sum_probs=84.3

Q ss_pred             HHHHHHHHhh---hccccEEEEEECCeEEEEEeeccCCCCCccchhhcccccchh-hHHHHHhhccCceecccccccCCC
Q 022619          151 LLWAWESLSA---VTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQG-SVYLGVMRSKAQRYLANLLLYPGR  226 (294)
Q Consensus       151 LAWas~~LLt---nT~a~svlV~~~G~vllrRG~~~~~~~~g~a~~~d~~~~~pG-~I~~r~~~~~~~iyL~nl~lyPGr  226 (294)
                      |+-.+..|.+   ++...++.+..++...+  +.......  .      ..+..| .+|.++.++++++.+.|..-.|..
T Consensus        27 L~~i~~~l~~~~~~~~~~~~yl~d~~~~~l--~~~~~~~~--~------~~i~~g~g~~g~v~~~~~~~~v~d~~~d~~~   96 (159)
T d1vhma_          27 LANTSALLYERLTDINWAGFYLLEDDTLVL--GPFQGKIA--C------VRIPVGRGVCGTAVARNQVQRIEDVHVFDGH   96 (159)
T ss_dssp             HHHHHHHHHHHSSSCSEEEEEEEETTEEEE--EEEEESCC--C------SEEETTSHHHHHHHHHTSCEEESCTTTCTTC
T ss_pred             HHHHHHHHHHhhccCceEEEEEEECCEeee--eeecCCcc--e------eEEecCCChHHHHHHcCCcEEecChHHhhhh
Confidence            5666666643   44445555655555444  22222111  0      123322 378999999999999999877765


Q ss_pred             CCCCCCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHHHHhh
Q 022619          227 SELPFLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAK  281 (294)
Q Consensus       227 ~Ef~~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~tL~~  281 (294)
                      .   ....+.+|++|.||-.    -|+|.+++..++.||+.|...++.+|+.+..+++.
T Consensus        97 ~---~~~~~~~S~l~vPl~~~~~viGvl~v~s~~~~~F~~~d~~ll~~la~qia~ai~~  152 (159)
T d1vhma_          97 I---ACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT  152 (159)
T ss_dssp             C---CSCCCCSEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             h---hcccccceeEEeCEEECCEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            4   3467899999999943    39999999999999999999999999999998875

>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: Hypothetical protein ykl069wp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=0.00014  Score=59.61  Aligned_cols=73  Identities=18%  Similarity=0.330  Sum_probs=63.2

Q ss_pred             hHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEec-CCC----eEEEEecCCCcccChhhHHHHHHHHHHHHH
Q 022619          203 SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPL-GDK----GIAIIGGDTIRGFTTSDQSWIAFIGEKLDA  277 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPi-g~~----Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~  277 (294)
                      .+|.++.+++++++..|..-.|.   |.....++++.+|.|| ..+    |||-+.+..++.||+.|+.+++.+|+-+..
T Consensus        96 Gi~G~v~~~g~~i~v~D~~~dpr---~~~~~~~~~S~l~vPl~~~~g~~~GVl~v~s~~~~~F~~~d~~~l~~~A~~ia~  172 (176)
T d1f5ma_          96 GVCGTAASTKETQIVPDVNKYPG---HIACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLAKLINK  172 (176)
T ss_dssp             HHHHHHHHHTSCEEESCGGGSTT---CCCSSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhCCeEEecCcccCcc---hhhccccccceEEecccccCCcEEEEEEeccCCCCCcCHHHHHHHHHHHHHHHH
Confidence            57899999999999999987774   4455678999999999 344    799999999999999999999999998875


Q ss_pred             H
Q 022619          278 T  278 (294)
Q Consensus       278 t  278 (294)
                      +
T Consensus       173 a  173 (176)
T d1f5ma_         173 S  173 (176)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.62  E-value=0.017  Score=45.64  Aligned_cols=79  Identities=19%  Similarity=0.056  Sum_probs=56.8

Q ss_pred             hHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecC----C--CeEE-EEecCCCcccChhhHHHHHHHHHHH
Q 022619          203 SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLG----D--KGIA-IIGGDTIRGFTTSDQSWIAFIGEKL  275 (294)
Q Consensus       203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig----~--~Gvl-vlgs~s~R~FT~kDe~WI~~iA~KL  275 (294)
                      .++.++.++++++++.|..-=|-..-....-.++.+++|.|+-    +  -||+ +.-....+.||+.|...+..+|+-+
T Consensus        73 g~~~~v~~~~~~~~i~d~~~d~~~~~~~~~~~~~~s~l~vPl~~~~~~~~iGvl~~~~~~~~~~fs~~d~~~l~~~a~~~  152 (187)
T d1mc0a1          73 GRLGQVVEDKQCIQLKDLTSDDVQQLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDEDEHVIQHCFHYT  152 (187)
T ss_dssp             SSHHHHHHHCCCEEGGGSCHHHHHHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhhhhhhhhccccccccccchhhhhhHHHHHhhhhhccccccceEEEEEEcccccchhhhHHHHHHHHHHHHH
Confidence            4567889999999999976311100112334578899999992    2  4566 4445677899999999999999998


Q ss_pred             HHHHhh
Q 022619          276 DATLAK  281 (294)
Q Consensus       276 ~~tL~~  281 (294)
                      ...++.
T Consensus       153 a~ai~n  158 (187)
T d1mc0a1         153 GTVLTS  158 (187)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877753

>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.40  E-value=0.92  Score=32.72  Aligned_cols=80  Identities=11%  Similarity=0.020  Sum_probs=53.0

Q ss_pred             hhHHHHHhhccCceecccccccCCCCCCC--CCCCCCCeeEEEe-cCC----CeEE-EEecCCCcccChhhHHHHHHHHH
Q 022619          202 GSVYLGVMRSKAQRYLANLLLYPGRSELP--FLPSNTQAVILQP-LGD----KGIA-IIGGDTIRGFTTSDQSWIAFIGE  273 (294)
Q Consensus       202 G~I~~r~~~~~~~iyL~nl~lyPGr~Ef~--~LP~ntqsVlvQP-ig~----~Gvl-vlgs~s~R~FT~kDe~WI~~iA~  273 (294)
                      ..++.++..+++.+...|...-+-.....  .......+.+|.| +..    -|++ +.....+|.||+.|..-++.+|+
T Consensus        55 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~f~~~d~~ll~~la~  134 (154)
T d1mc0a2          55 QGIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSI  134 (154)
T ss_dssp             SHHHHHHHHHCCCEEESCSTTCTTCCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHHHHHHHHHH
T ss_pred             ccchhheeccCcEEEEEeccccccccchhhhhhcccceeEEEEecccccceeeEEEEeecccccccccHHHHHHHHHHHH
Confidence            46778889999999888776544333331  1122333334433 332    3344 44467899999999999999999


Q ss_pred             HHHHHHhh
Q 022619          274 KLDATLAK  281 (294)
Q Consensus       274 KL~~tL~~  281 (294)
                      .+...+++
T Consensus       135 q~aiAi~n  142 (154)
T d1mc0a2         135 YCGISIAH  142 (154)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888765