Citrus Sinensis ID: 022623

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MGPLAINHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVLKFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVCHDLRLPLSGQRLLASHMATRQLYPRALSCQWLLML
Secondary Structure (PSIPRED)
cccccccccccEEEEcccccccccccHHHHHHHHHHccccccccccccccEEEccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEcccccEEEEcccccccccccHHHccEEEEEccccccccccEEEEEEHHcHccHHHHcccccccccccccccccccccccccccccccHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHcHEHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mgplainhcstityrasnrhplcpdsasMRAKFIglhnagksHNVLKFRMRTFASKKSVKKLKRDRQLRLAEkgngvadrsgteddyvkdeskestddnftsqtlvtipsrsnvLQACTVTCGLITALGVIIRQgshvasleglpfldgstevtFDFELWHLELITGLVVLVSSCRYLLLKtwpdfaksSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGallplfgmdWRSVLAVATVFGAlhlgsgrkysfavchdlrlplsGQRLLASHMATRQLYPRALSCQWLLML
Flexible Loop (DISEMBL)
MGPLAINHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVLKFRmrtfaskksvkklkrdrqlrlaekgngvadrsgteddyvkdeskestddnftsqtlvtipsrsnVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVCHDLRLPLSGQRLLASHMATRQLYPRALSCQWLLML
Low Complexity Region (SEG)
MGPLAINHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVLKFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVCHDLRLPLSGQRLLASHMATRQLYPRALSCQWLLML
Disordered region (IsUnstruct)
*****INHCSTITYRASN***LC*****MRAKFIGLHNAGKSHNVLKFRMRT***************************************************TLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVCHDLRLPLSGQRLLASHMATRQLYPRALSCQWLL**
Disordered Region (DISOPRED)
*GPL**NHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVL*****************************************************************SNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVCHDLRLPLSGQRLLASHMATRQLYPRALSCQWLLML
Disordered Region (DISEMBL)
MGPLAINHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVLKFRMRTFASK**********QLRLAEK***************************TSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVCHDLRLPLSGQRLLASHMATRQLYPRALSCQWLLML
Disordered Region (DISPRO)
*GPLAINHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVLKFRMRTFASKK*************************************************TIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVCHDLRLPLSGQRLLASHMATRQLYPRALSCQWLLML
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPLAINHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVLKFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVCHDLRLPLSGQRLLASHMATRQLYPRALSCQWLLML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
225425936	314	PREDICTED: uncharacterized protein LOC10	0.867	0.812	0.603	8e-83
297738318	350	unnamed protein product [Vitis vinifera]	0.867	0.728	0.603	1e-82
224100093	260	predicted protein [Populus trichocarpa]	0.704	0.796	0.659	3e-72
255547934	290	prenyl-dependent CAAX protease, putative	0.704	0.713	0.634	4e-71
449450604	304	PREDICTED: uncharacterized protein LOC10	0.836	0.809	0.543	1e-65
363808170	259	uncharacterized protein LOC100796629 [Gl	0.602	0.683	0.603	2e-64
297814844	293	CAAX amino terminal protease family prot	0.710	0.713	0.573	2e-63
145332689	322	CAAX amino terminal protease family prot	0.707	0.645	0.583	1e-62
18404792	293	CAAX amino terminal protease family prot	0.707	0.709	0.578	2e-62
334185639	313	CAAX amino terminal protease family prot	0.707	0.664	0.578	3e-62

>gi|225425936|ref|XP_002273043.1| PREDICTED: uncharacterized protein LOC100252714 [Vitis vinifera]

 Score =  313 bits (801), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 163/270 (60%), Positives = 191/270 (70%), Gaps = 15/270 (5%)

Query: 20  HPLCPDSASMRAKFIGLHNAGKSHNVLKF-----RMRTFASKKSVKKLKRDRQLR----- 69
           H   P SA M  K IGLH+  K      F     ++R FAS+ SVKKL++DRQ R     
Sbjct: 16  HSPWPISAFMGRKLIGLHDKQKILPTKFFCGLGGKIRAFASRNSVKKLRKDRQARKNLTL 75

Query: 70  -----LAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGL 124
                   + NG+ DR  +EDD V D  K S  DN  +Q  +TIPSR  VLQACTVT GL
Sbjct: 76  QTNKIAPNEDNGLEDRFPSEDDSVPDNKKVSPIDNLAAQGSITIPSRGAVLQACTVTSGL 135

Query: 125 ITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWP 184
           I ALG+IIRQ SH AS+EGLP LD S EV+F FE+WHLELI GLV++VSSCR+LLLKTWP
Sbjct: 136 IAALGIIIRQVSHTASIEGLPILDCSMEVSFGFEMWHLELIAGLVIMVSSCRFLLLKTWP 195

Query: 185 DFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFG 244
           DFA+SSEAANQQVL+SL+PLDY+VVAFLPGISEELLFRGALLPLFG++W+SV  VA +FG
Sbjct: 196 DFAESSEAANQQVLSSLQPLDYMVVAFLPGISEELLFRGALLPLFGVNWKSVFVVAAIFG 255

Query: 245 ALHLGSGRKYSFAVCHDLRLPLSGQRLLAS 274
            LHLG GRKYSFA+       L G   +AS
Sbjct: 256 VLHLGGGRKYSFAIWATFVGVLYGYATIAS 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738318|emb|CBI27519.3| unnamed protein product [Vitis vinifera]

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 163/270 (60%), Positives = 191/270 (70%), Gaps = 15/270 (5%)

Query: 20  HPLCPDSASMRAKFIGLHNAGKSHNVLKF-----RMRTFASKKSVKKLKRDRQLR----- 69
           H   P SA M  K IGLH+  K      F     ++R FAS+ SVKKL++DRQ R     
Sbjct: 52  HSPWPISAFMGRKLIGLHDKQKILPTKFFCGLGGKIRAFASRNSVKKLRKDRQARKNLTL 111

Query: 70  -----LAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGL 124
                   + NG+ DR  +EDD V D  K S  DN  +Q  +TIPSR  VLQACTVT GL
Sbjct: 112 QTNKIAPNEDNGLEDRFPSEDDSVPDNKKVSPIDNLAAQGSITIPSRGAVLQACTVTSGL 171

Query: 125 ITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWP 184
           I ALG+IIRQ SH AS+EGLP LD S EV+F FE+WHLELI GLV++VSSCR+LLLKTWP
Sbjct: 172 IAALGIIIRQVSHTASIEGLPILDCSMEVSFGFEMWHLELIAGLVIMVSSCRFLLLKTWP 231

Query: 185 DFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFG 244
           DFA+SSEAANQQVL+SL+PLDY+VVAFLPGISEELLFRGALLPLFG++W+SV  VA +FG
Sbjct: 232 DFAESSEAANQQVLSSLQPLDYMVVAFLPGISEELLFRGALLPLFGVNWKSVFVVAAIFG 291

Query: 245 ALHLGSGRKYSFAVCHDLRLPLSGQRLLAS 274
            LHLG GRKYSFA+       L G   +AS
Sbjct: 292 VLHLGGGRKYSFAIWATFVGVLYGYATIAS 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100093|ref|XP_002311741.1| predicted protein [Populus trichocarpa] gi|222851561|gb|EEE89108.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 145/220 (65%), Positives = 170/220 (77%), Gaps = 13/220 (5%)

Query: 47  KFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRS---GTEDDYVKDESKESTDDNFTS- 102
           KFR RTFA +KSVKK  RD + +     NG+A  S   G E++ V    K S +DN    
Sbjct: 1   KFRTRTFARRKSVKKWTRDERSQ-----NGIALESTEKGLEEERVVLSDKSSLEDNSVEP 55

Query: 103 --QTLVTIPSRSNVLQACTVTCGLITALGVI--IRQGSHVASLEGLPFLDGSTEVTFDFE 158
              TL  I SRS+VLQACTVT GLI AL +   +   SHVAS+EGLP LD STEV+F  E
Sbjct: 56  VQSTLNNIASRSDVLQACTVTSGLIAALELFSFVDLVSHVASMEGLPILDCSTEVSFGIE 115

Query: 159 LWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEE 218
           +WHLELITGLV+L+SSCRYLLLKTWPDFA+S+EAANQQVLTSL+PLDYLVV+FLPG++EE
Sbjct: 116 MWHLELITGLVILISSCRYLLLKTWPDFAESTEAANQQVLTSLQPLDYLVVSFLPGVTEE 175

Query: 219 LLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAV 258
           LLFRGALLPLFGMDW+SVL  AT+FG LHLG+GRKYSFA+
Sbjct: 176 LLFRGALLPLFGMDWKSVLLAATIFGVLHLGNGRKYSFAI 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547934|ref|XP_002515024.1| prenyl-dependent CAAX protease, putative [Ricinus communis] gi|223546075|gb|EEF47578.1| prenyl-dependent CAAX protease, putative [Ricinus communis]

 Score =  274 bits (700), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 137/216 (63%), Positives = 169/216 (78%), Gaps = 9/216 (4%)

Query: 47  KFRMRTFASKK-SVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDD---NFTS 102
           +F  + FA ++   KKL+R+ QL      NG+A ++ T+  + +++   S +D   N   
Sbjct: 32  RFCTKAFARQQIPKKKLRRNGQLE-----NGIALKTTTDKSFTENDDGSSLEDSTVNNIM 86

Query: 103 QTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHL 162
           + L++IPSR  VLQACTVT GLI ALG++IRQ SHVAS+EGLP LD S+EV+F  E WH 
Sbjct: 87  EKLISIPSRRAVLQACTVTSGLIAALGILIRQVSHVASVEGLPILDCSSEVSFGTETWHF 146

Query: 163 ELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFR 222
           EL+ GLVVL+SS RYLLL TWPDFA+S+EAANQQVLTSL+PLDY+VV+FLPGISEELLFR
Sbjct: 147 ELVIGLVVLISSSRYLLLMTWPDFAESTEAANQQVLTSLQPLDYIVVSFLPGISEELLFR 206

Query: 223 GALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAV 258
           GALLPLFGMDW+S LAVA VFG LHLGSGRKYSFA+
Sbjct: 207 GALLPLFGMDWKSALAVAAVFGVLHLGSGRKYSFAI 242

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450604|ref|XP_004143052.1| PREDICTED: uncharacterized protein LOC101207590 [Cucumis sativus]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/267 (54%), Positives = 182/267 (68%), Gaps = 21/267 (7%)

Query: 1   MGPLAINHCSTITYRASNRHPLC-PDSASMRAKFIGLHN------AGKS--HNVLKFRMR 51
           M  LAIN+  T T   S  +     +S  M  K IGL N      AG S   NV   + +
Sbjct: 1   MNLLAINYRCTSTDAGSTFNLFTWRNSIFMGRKGIGLCNLRRVLPAGLSCRSNV---KTK 57

Query: 52  TFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSR 111
             A +KS ++L+R+R+         V+  S + DD  + E K ++ D+     L+ I SR
Sbjct: 58  VCAKRKSARRLERNRE--------EVSITSSSADDNAQ-EVKMNSSDSSPKNYLINISSR 108

Query: 112 SNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVL 171
           S+VLQAC +T GLI ALGVIIRQ SHVAS+EGLP +D ++EV+F FE+W L+LI GLVVL
Sbjct: 109 SSVLQACIITSGLIAALGVIIRQVSHVASIEGLPVIDCTSEVSFSFEVWQLQLIIGLVVL 168

Query: 172 VSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGM 231
           +SS R+ LLKTWPDFA+SSEAAN+QVLTSL+PLDY VVAFLPGISEELLFRGAL+PL G 
Sbjct: 169 ISSSRFFLLKTWPDFAESSEAANRQVLTSLQPLDYAVVAFLPGISEELLFRGALIPLLGF 228

Query: 232 DWRSVLAVATVFGALHLGSGRKYSFAV 258
           +W SV+  A +FG LHLG GRKYSFA+
Sbjct: 229 NWASVVVTAAIFGILHLGGGRKYSFAI 255

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808170|ref|NP_001242738.1| uncharacterized protein LOC100796629 [Glycine max] gi|255639117|gb|ACU19858.1| unknown [Glycine max]

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 128/212 (60%), Positives = 154/212 (72%), Gaps = 35/212 (16%)

Query: 47  KFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLV 106
           ++ + +FA KKS+KK +RD                      V + + +  DD        
Sbjct: 33  RYSICSFA-KKSLKKSRRD----------------------VTEAAGDLLDD-------- 61

Query: 107 TIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELIT 166
               +S VLQAC +TCGLI ALG++IRQ SHVAS+EGLP  D STEV+F FE+WHLELIT
Sbjct: 62  ----KSAVLQACIITCGLIAALGIVIRQVSHVASVEGLPVFDCSTEVSFGFEMWHLELIT 117

Query: 167 GLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALL 226
           GLVVL+SSCRYLLLKTWPDFAKSSEAANQQVL+SL+PLDY+VVAFLPGISEELLFRGA+L
Sbjct: 118 GLVVLISSCRYLLLKTWPDFAKSSEAANQQVLSSLQPLDYIVVAFLPGISEELLFRGAIL 177

Query: 227 PLFGMDWRSVLAVATVFGALHLGSGRKYSFAV 258
           PL GM+W S+   A +FG LHLG+GRKYSFA+
Sbjct: 178 PLLGMNWNSIGIAALIFGVLHLGNGRKYSFAI 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814844|ref|XP_002875305.1| CAAX amino terminal protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297321143|gb|EFH51564.1| CAAX amino terminal protease family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 125/218 (57%), Positives = 158/218 (72%), Gaps = 9/218 (4%)

Query: 45  VLKFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQ- 103
           +++F +R  +S+KS+KKL+R+ Q     +G  +  R+ TE++      +E+  D  TS+ 
Sbjct: 34  LVQFDVRASSSRKSLKKLRRESQ-----QGKDITTRNVTEEEVSSPRFEEAQVDTLTSKD 88

Query: 104 ---TLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELW 160
               +V    R  VLQACTVT GL+ ALG+IIR+ SHVAS EGLP  D S  V F FE W
Sbjct: 89  STGAVVVAAPRDKVLQACTVTSGLMAALGLIIRKASHVASTEGLPVPDCSIVVPFGFETW 148

Query: 161 HLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELL 220
           HL LI G+VV +SS R+LLLK+WPDFA SSEAAN+Q+LTSLEPLDYLVVA LPGISEE+L
Sbjct: 149 HLGLIAGIVVFISSSRFLLLKSWPDFADSSEAANRQILTSLEPLDYLVVAMLPGISEEML 208

Query: 221 FRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAV 258
           FRGAL+PL G +W  ++AV  +FG LHLGSGRKYSFAV
Sbjct: 209 FRGALMPLLGTNWNGIVAVGLIFGLLHLGSGRKYSFAV 246

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332689|ref|NP_001078210.1| CAAX amino terminal protease family protein [Arabidopsis thaliana] gi|332643593|gb|AEE77114.1| CAAX amino terminal protease family protein [Arabidopsis thaliana]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 126/216 (58%), Positives = 158/216 (73%), Gaps = 8/216 (3%)

Query: 46  LKFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTL 105
            KF +R  +S+KS+KKLKR+ Q     +G  +  R+ T+++      +E+  D+ TS+  
Sbjct: 65  FKFDVRASSSRKSLKKLKRESQ-----QGKDIGLRNVTDEEVSSPRFEEAQVDSSTSKDS 119

Query: 106 VTI---PSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHL 162
           + +     R  VLQACTVT GL+ ALG+IIR+ SHVAS EGL   D S +V F FE WHL
Sbjct: 120 IDVFVAAPRDKVLQACTVTSGLMAALGLIIRKASHVASTEGLLVPDCSIDVPFGFETWHL 179

Query: 163 ELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFR 222
            LI G+VV +SS R+LLLK+WPDFA SSEAAN+Q+LTSLEPLDYLVVA LPGISEELLFR
Sbjct: 180 GLIAGIVVFISSSRFLLLKSWPDFADSSEAANRQILTSLEPLDYLVVAMLPGISEELLFR 239

Query: 223 GALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAV 258
           GAL+PLFG +W  ++AV  +FG LHLGSGRKYSFAV
Sbjct: 240 GALMPLFGTNWNGIVAVGLIFGLLHLGSGRKYSFAV 275

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404792|ref|NP_566788.1| CAAX amino terminal protease family protein [Arabidopsis thaliana] gi|18377767|gb|AAL67033.1| unknown protein [Arabidopsis thaliana] gi|20259159|gb|AAM14295.1| unknown protein [Arabidopsis thaliana] gi|332643592|gb|AEE77113.1| CAAX amino terminal protease family protein [Arabidopsis thaliana]

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/216 (57%), Positives = 159/216 (73%), Gaps = 8/216 (3%)

Query: 46  LKFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTL 105
           ++F +R  +S+KS+KKLKR+ Q     +G  +  R+ T+++      +E+  D+ TS+  
Sbjct: 36  VQFDVRASSSRKSLKKLKRESQ-----QGKDIGLRNVTDEEVSSPRFEEAQVDSSTSKDS 90

Query: 106 VTI---PSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHL 162
           + +     R  VLQACTVT GL+ ALG+IIR+ SHVAS EGL   D S +V F FE WHL
Sbjct: 91  IDVFVAAPRDKVLQACTVTSGLMAALGLIIRKASHVASTEGLLVPDCSIDVPFGFETWHL 150

Query: 163 ELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFR 222
            LI G+VV +SS R+LLLK+WPDFA SSEAAN+Q+LTSLEPLDYLVVA LPGISEELLFR
Sbjct: 151 GLIAGIVVFISSSRFLLLKSWPDFADSSEAANRQILTSLEPLDYLVVAMLPGISEELLFR 210

Query: 223 GALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAV 258
           GAL+PLFG +W  ++AV  +FG LHLGSGRKYSFAV
Sbjct: 211 GALMPLFGTNWNGIVAVGLIFGLLHLGSGRKYSFAV 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185639|ref|NP_001189980.1| CAAX amino terminal protease family protein [Arabidopsis thaliana] gi|332643594|gb|AEE77115.1| CAAX amino terminal protease family protein [Arabidopsis thaliana]

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 125/216 (57%), Positives = 159/216 (73%), Gaps = 8/216 (3%)

Query: 46  LKFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTL 105
           ++F +R  +S+KS+KKLKR+ Q     +G  +  R+ T+++      +E+  D+ TS+  
Sbjct: 56  VQFDVRASSSRKSLKKLKRESQ-----QGKDIGLRNVTDEEVSSPRFEEAQVDSSTSKDS 110

Query: 106 VTI---PSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHL 162
           + +     R  VLQACTVT GL+ ALG+IIR+ SHVAS EGL   D S +V F FE WHL
Sbjct: 111 IDVFVAAPRDKVLQACTVTSGLMAALGLIIRKASHVASTEGLLVPDCSIDVPFGFETWHL 170

Query: 163 ELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFR 222
            LI G+VV +SS R+LLLK+WPDFA SSEAAN+Q+LTSLEPLDYLVVA LPGISEELLFR
Sbjct: 171 GLIAGIVVFISSSRFLLLKSWPDFADSSEAANRQILTSLEPLDYLVVAMLPGISEELLFR 230

Query: 223 GALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAV 258
           GAL+PLFG +W  ++AV  +FG LHLGSGRKYSFAV
Sbjct: 231 GALMPLFGTNWNGIVAVGLIFGLLHLGSGRKYSFAV 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:505006379	322	AT3G26085 "AT3G26085" [Arabido	0.704	0.642	0.586	1.7e-59

TAIR|locus:505006379 AT3G26085 "AT3G26085" [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 126/215 (58%), Positives = 158/215 (73%)

Query:    47 KFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLV 106
             KF +R  +S+KS+KKLKR+ Q     +G  +  R+ T+++      +E+  D+ TS+  +
Sbjct:    66 KFDVRASSSRKSLKKLKRESQ-----QGKDIGLRNVTDEEVSSPRFEEAQVDSSTSKDSI 120

Query:   107 TI---PSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLE 163
              +     R  VLQACTVT GL+ ALG+IIR+ SHVAS EGL   D S +V F FE WHL 
Sbjct:   121 DVFVAAPRDKVLQACTVTSGLMAALGLIIRKASHVASTEGLLVPDCSIDVPFGFETWHLG 180

Query:   164 LITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRG 223
             LI G+VV +SS R+LLLK+WPDFA SSEAAN+Q+LTSLEPLDYLVVA LPGISEELLFRG
Sbjct:   181 LIAGIVVFISSSRFLLLKSWPDFADSSEAANRQILTSLEPLDYLVVAMLPGISEELLFRG 240

Query:   224 ALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAV 258
             AL+PLFG +W  ++AV  +FG LHLGSGRKYSFAV
Sbjct:   241 ALMPLFGTNWNGIVAVGLIFGLLHLGSGRKYSFAV 275


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      294       294   0.00091  115 3  11 22  0.48    33
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  208 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.21u 0.16s 25.37t   Elapsed:  00:00:02
  Total cpu time:  25.21u 0.16s 25.37t   Elapsed:  00:00:02
  Start:  Fri May 10 08:55:04 2013   End:  Fri May 10 08:55:06 2013

GO:0003674 "molecular_function" evidence=ND

GO:0006508 "proteolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00035125001 SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (256 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
pfam02517	93	pfam02517, Abi, CAAX protease self-immunity	1e-06
COG1266	226	COG1266, COG1266, Predicted metal-dependent membra	0.001

>gnl|CDD|217080 pfam02517, Abi, CAAX protease self-immunity

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 199 TSLEPLDYLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVATVFGALHLGSG 251
             L  L  L++A L  I EELLFRG LLP          ++L  + +FG LHL +G
Sbjct: 1   PLLLLLLLLLLALLAPIGEELLFRGFLLPRLRKRFWPLLAILISSLLFGLLHLPNG 56

Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity. Length = 93

>gnl|CDD|224185 COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 206 YLVVAFLPGISEELLFRGALLPLFGMDWRSVLAV---ATVFGALHLGSGRKYSFAV 258
           +LV+  L  ++EELLFRG LL      +  +LA+   + +F  LHL +G    + +
Sbjct: 126 FLVLLILAPLAEELLFRGYLLGALARRFGPLLAIIISSLLFALLHLPNGLLLLYFL 181

Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
TIGR03008	222	pepcterm_CAAX CAAX prenyl protease-related protein	99.62
COG1266	226	Predicted metal-dependent membrane protease [Gener	99.57
PF02517	91	Abi: CAAX protease self-immunity; InterPro: IPR003	99.55
KOG4130	291	consensus Prenyl protein protease [Posttranslation	98.08
COG4449	827	Predicted protease of the Abi (CAAX) family [Gener	97.31

>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein

Probab=99.62  E-value=4.8e-15  Score=135.50  Aligned_cols=74  Identities=24%  Similarity=0.261  Sum_probs=65.0

Q ss_pred             HHHHHHhhHHHHHHHHHHHhHhhhcc-----------hhHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHh
Q 022623          206 YLVVAFLPGISEELLFRGALLPLFGM-----------DWRSVLAVATVFGALHLGSGRKYSFAVCHDLRLPLSGQRLLAS  274 (294)
Q Consensus       206 il~v~iLapI~EELLFRGiLl~~fg~-----------~w~aIviSSllFGllH~~~~~~~~~~i~a~llGliLG~vYl~T  274 (294)
                      ++..++++|++||++|||++++.+.+           .|.++++||++||+.|..       .+.+++.|+++|++|.+|
T Consensus       120 l~~~~l~vpi~EElfFRG~l~~~l~~~~f~~~~~~~~~~~a~lisSllFal~H~~-------~~~~~l~Gli~~~l~~~t  192 (222)
T TIGR03008       120 LAGATLVVPVMEELFWRSFLLRYLQQSDFESVPGGRFHWPSFLAVTLLFGLEHHL-------IVAGLIAGLAYNLLLLRT  192 (222)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence            35568899999999999999998832           388999999999999983       445678899999999999


Q ss_pred             CCchhhHHHHHH
Q 022623          275 HMATRQLYPRAL  286 (294)
Q Consensus       275 GSL~~~I~~~a~  286 (294)
                      |||+.+|..|++
T Consensus       193 gsL~~~I~~H~~  204 (222)
T TIGR03008       193 GSIMACILAHAV  204 (222)
T ss_pred             CChHHHHHHHHH
Confidence            999999999987

The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.

>COG1266 Predicted metal-dependent membrane protease [General function prediction only]

Probab=99.57  E-value=5.3e-14  Score=122.33  Aligned_cols=85  Identities=26%  Similarity=0.294  Sum_probs=74.6

Q ss_pred             chhHHHHHHhhHHHHHHHHHHHhHhhhcc---hhHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhCCchh
Q 022623          203 PLDYLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVATVFGALHLGSGRKYSFAVCHDLRLPLSGQRLLASHMATR  279 (294)
Q Consensus       203 ~~~il~v~iLapI~EELLFRGiLl~~fg~---~w~aIviSSllFGllH~~~~~~~~~~i~a~llGliLG~vYl~TGSL~~  279 (294)
                      ...++...+.+|++||++|||++++.+.+   .+.++++||++||+.|..+...+.++++.+.+|++++++|.+|||+++
T Consensus       123 ~~~~~~~~i~~~l~EEl~fRg~l~~~l~~~~~~~~a~iissllFal~H~~~~~~~~~~~~~~~~gli~~~~~~~t~~l~~  202 (226)
T COG1266         123 LLFFLVLLILAPLAEELLFRGYLLGALARRFGPLLAIIISSLLFALLHLPNGLLLLYFLLYFIAGLILGLLYLRTGSLWV  202 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence            34567778999999999999999999865   388999999999999998764467788889999999999999999999


Q ss_pred             hHHHHHHH
Q 022623          280 QLYPRALS  287 (294)
Q Consensus       280 ~I~~~a~~  287 (294)
                      |+..|++.
T Consensus       203 ~i~~H~~~  210 (226)
T COG1266         203 PILLHALI  210 (226)
T ss_pred             HHHHHHHH
Confidence            99988873

>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases)

Probab=99.55  E-value=2.4e-14  Score=110.63  Aligned_cols=80  Identities=26%  Similarity=0.334  Sum_probs=70.0

Q ss_pred             hhHHHHHHhhHHHHHHHHHHHhHhhhcc---hhHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhCCchhh
Q 022623          204 LDYLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVATVFGALHLGSGRKYSFAVCHDLRLPLSGQRLLASHMATRQ  280 (294)
Q Consensus       204 ~~il~v~iLapI~EELLFRGiLl~~fg~---~w~aIviSSllFGllH~~~~~~~~~~i~a~llGliLG~vYl~TGSL~~~  280 (294)
                      +..+...++.|+.||++|||++++.+.+   ++.++++|+++||+.|...  .+. ++..++.|++++++|.+|||++++
T Consensus         5 ~~~~~~~~~~~~~EEl~fRg~l~~~l~~~~~~~~a~~is~~~f~~~H~~~--~~~-~~~~~~~g~~~~~~~~~t~sl~~~   81 (91)
T PF02517_consen    5 IFFLVMILIAPIAEELFFRGFLFNRLRRRFNPWFAILISSLLFALWHLPN--GPQ-FIYAFLFGLLFGYLYLRTGSLWAA   81 (91)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhh--hHH-HHHHHHHHHHHHHHHHHcCChHHH
Confidence            4567788999999999999999998854   3899999999999999986  233 677889999999999999999999


Q ss_pred             HHHHHH
Q 022623          281 LYPRAL  286 (294)
Q Consensus       281 I~~~a~  286 (294)
                      +..|++
T Consensus        82 i~~H~~   87 (91)
T PF02517_consen   82 IIAHAL   87 (91)
T ss_pred             HHHHHH
Confidence            998775

The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane

>KOG4130 consensus Prenyl protein protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=8.6e-05  Score=69.49  Aligned_cols=77  Identities=18%  Similarity=0.205  Sum_probs=62.7

Q ss_pred             HHhhHHHHHHHHHHHhHhhhcc----hhHHHHHHHHHHHHhhcCC-------Cch----h-----HHHHHHHHHHHHHHH
Q 022623          210 AFLPGISEELLFRGALLPLFGM----DWRSVLAVATVFGALHLGS-------GRK----Y-----SFAVCHDLRLPLSGQ  269 (294)
Q Consensus       210 ~iLapI~EELLFRGiLl~~fg~----~w~aIviSSllFGllH~~~-------~~~----~-----~~~i~a~llGliLG~  269 (294)
                      -+++|++||++||..+++.+..    ...++.+..+.||+.|.-.       .+.    .     ..+.++++.|..-+.
T Consensus       135 ~iiaPLtEElvfracmlp~~l~~~~s~l~avF~~PLfFGvAH~HHiyEqL~~g~~~~~~ilL~t~fQfsYTtlFG~yTaf  214 (291)
T KOG4130|consen  135 FIIAPLTEELVFRACMLPTYLNLIQSSLQAVFWQPLFFGVAHAHHIYEQLQEGSMTTVSILLTTCFQFSYTTLFGGYTAF  214 (291)
T ss_pred             hhhccchHHHHHHHHHHHHHHHhhhcchhhHHHhhHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3799999999999999987643    4678888889999999632       100    0     126778899999999


Q ss_pred             HHHHhCCchhhHHHHHH
Q 022623          270 RLLASHMATRQLYPRAL  286 (294)
Q Consensus       270 vYl~TGSL~~~I~~~a~  286 (294)
                      ++++||++|.||+.||.
T Consensus       215 lF~rTghl~~~iLvHAf  231 (291)
T KOG4130|consen  215 LFVRTGHLWCPILVHAF  231 (291)
T ss_pred             HhhhcCCchHHHHHHHH
Confidence            99999999999999986

>COG4449 Predicted protease of the Abi (CAAX) family [General function prediction only]

Probab=97.31  E-value=0.00016  Score=73.30  Aligned_cols=89  Identities=25%  Similarity=0.277  Sum_probs=67.9

Q ss_pred             HHHHHHhhHHHHHHHHHHHhHhhhc---chhHHHHHHHH--HHHHhhcCCCc-----------hhHHHHHHHHHHHHHHH
Q 022623          206 YLVVAFLPGISEELLFRGALLPLFG---MDWRSVLAVAT--VFGALHLGSGR-----------KYSFAVCHDLRLPLSGQ  269 (294)
Q Consensus       206 il~v~iLapI~EELLFRGiLl~~fg---~~w~aIviSSl--lFGllH~~~~~-----------~~~~~i~a~llGliLG~  269 (294)
                      ++.+.+.|++.||+.||-++.+.=+   ++|.-+.....  +|-+.|.-+..           .+.|.....++|+-...
T Consensus       712 iL~vIl~PAl~EElvFRvvLlP~P~E~r~~W~tl~a~~~l~LfvLyHplnA~T~y~rg~PvFf~PiFL~ltglLGL~Ctv  791 (827)
T COG4449         712 ILTVILIPALGEELVFRVVLLPGPGEGRRPWVTLGAATGLVLFVLYHPLNALTFYPRGAPVFFRPIFLLLTGLLGLGCTV  791 (827)
T ss_pred             hhhheehhhccccceeEEEecCCCCccccchHhHHHHHHHHHHHHhhhhhhhhccccCCcceeccHHHHHHHHHhhhhhh
Confidence            4556678999999999999998753   36876666555  89999965421           23456666789999999


Q ss_pred             HHHHhCCchhhHHHH-HHHhHHhhcC
Q 022623          270 RLLASHMATRQLYPR-ALSCQWLLML  294 (294)
Q Consensus       270 vYl~TGSL~~~I~~~-a~~~~~~~~~  294 (294)
                      .|..|||+|+-++-+ |+..+|++.|
T Consensus       792 ty~vT~SlW~iV~lHW~vVvVWl~~L  817 (827)
T COG4449         792 TYRVTGSLWPIVLLHWAVVVVWLTWL  817 (827)
T ss_pred             hHHhccchHHHHHHHHHHHHHHHHHh
Confidence            999999999988755 5678888643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 7e-07
 Identities = 34/256 (13%), Positives = 76/256 (29%), Gaps = 58/256 (22%)

Query: 84  EDDYVKD----ESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVA 139
           ED +V +    + ++      + + +       +++ +     G +     ++ +   + 
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEI------DHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 140 SLEGLPFLDGSTEVTFDF--ELWHLELI--TGLVVLVSSCRYLLLKTWPDFAKSS----E 191
                 F++    + + F       E    + +  +    R  L      FAK +    +
Sbjct: 80  QK----FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 192 AANQ--QVLTSLEPLDYLVVAFLPGISEELLFRGALLPL-------FGMDW------RSV 236
              +  Q L  L P   +++  + G  +  +     L         F + W       S 
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 237 LAVATVFGALHLGSGRKYSFAVCHDLRLPL---SGQRLLASHMATRQLYPRAL------- 286
             V  +   L       ++    H   + L   S Q  L   + ++  Y   L       
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQ 254

Query: 287 ----------SCQWLL 292
                     SC+ LL
Sbjct: 255 NAKAWNAFNLSCKILL 270

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00