Citrus Sinensis ID: 022630

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGEKGQGVLEEAYASNRSKQVPDPSRPRKSKRSKRKRAV
Secondary Structure (PSIPRED)
cccccHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccccccccccccccccccccccccHHHHHHHHHccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccc
Coil and Loop (DISEMBL)
MQNLQPKIKAIQQRYAGNQERIQLETSRLYRqagvnplagclptlatIPVWIGLYQALSNVaneglltegffwipslsgpttiaarqsgsgiswllpfvdghpplgwhdtaaYLVLPVLLVVSQYasmelmkppqtddpaqkntlLVFKFLPLMIGYfslsvpsglsiYWFTNNVLSTAQQVWLRKlggakpvvtENASEIITAGrakrsvsqpsragdrFRQLKEEEKGKKlnkalpaedvqtmnsasdsegesdgekgQGVLEEAYasnrskqvpdpsrprkskrskrkrav
Flexible Loop (DISEMBL)
MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMkppqtddpaQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASeiitagrakrsvsqpsragdrfrqlkeeekgkklnkalpaedvqtmnsasdsegesdgEKGQGVLEEayasnrskqvpdpsrprkskrskrkrav
Low Complexity Region (SEG)
MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYlvlpvllvvSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQlkeeekgkklnkalPAEDVQTMNSAsdsegesdgeKGQGVLEEAYASNRSKQVPDpsrprkskrskrkrAV
Disordered region (IsUnstruct)
*********************IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASM**************NTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENA**I*********************************************************************************************
Disordered Region (DISOPRED)
MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYA********************VFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGG*********************************************************************************************************
Disordered Region (DISEMBL)
MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIIT*****************FRQLKEEEKGKKLNKALPAEDV******************QGVLEEAY**************************
Disordered Region (DISPRO)
*QNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPV*****************************************************************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGEKGQGVLEEAYASNRSKQVPDPSRPRKSKRSKRKRAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q9FY06	442	Inner membrane protein PP	N/A	no	0.938	0.624	0.820	1e-125
Q8LBP4	462	Inner membrane protein AL	yes	no	0.823	0.523	0.863	1e-124
Q9FYL3	499	ALBINO3-like protein 1, c	no	no	0.867	0.511	0.577	2e-84
Q8LKI3	422	Inner membrane ALBINO3-li	N/A	no	0.727	0.507	0.557	5e-68
Q8S339	495	Inner membrane ALBINO3-li	N/A	no	0.653	0.387	0.586	4e-61
B3QYV6	586	Membrane protein insertas	yes	no	0.605	0.303	0.345	1e-24
A1AV44	542	Membrane protein insertas	yes	no	0.551	0.298	0.347	7e-24
O66103	622	Membrane protein insertas	yes	no	0.578	0.273	0.344	8e-23
A0LLH3	553	Membrane protein insertas	yes	no	0.547	0.291	0.331	1e-22
B2IDV5	604	Membrane protein insertas	yes	no	0.625	0.304	0.356	5e-22

>sp|Q9FY06|PPF1_PEA Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2

 Score =  446 bits (1148), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/278 (82%), Positives = 245/278 (88%), Gaps = 2/278 (0%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQNLQPKIKAIQ+RYAGNQERIQLETSRLY QAGVNPLAGCLPTLATIPVWIGLYQALSN
Sbjct: 147 MQNLQPKIKAIQERYAGNQERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSN 206

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
           VANEGLLTEGF WIPSL GPT+IAARQSGSGISWL PFVDGHP LGW+DTAAYLVLPVLL
Sbjct: 207 VANEGLLTEGFLWIPSLGGPTSIAARQSGSGISWLFPFVDGHPLLGWYDTAAYLVLPVLL 266

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           +VSQY SME+MKPPQT+DP QKNTLL+FKFLPLMIGYFSLSVPSGL+IYWFTNNVLSTAQ
Sbjct: 267 IVSQYVSMEIMKPPQTNDPNQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQ 326

Query: 181 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAE 240
           QVWLRKLGGAKP V ENA  IITAG+AKRS S+P + G+RFRQLKEEEK KKL KALP E
Sbjct: 327 QVWLRKLGGAKPAVNENAGGIITAGQAKRSASKPEKGGERFRQLKEEEKKKKLIKALPVE 386

Query: 241 DVQTMNSASDSEGESDGE--KGQGVLEEAYASNRSKQV 276
           +VQ + SAS S   SD E  K Q V EE+  S  S++V
Sbjct: 387 EVQPLASASASNDGSDVENNKEQEVTEESNTSKVSQEV 424

May be required for the insertion of some integral membrane proteins into the chloroplast thylakoid membrane. May play a role in inhibiting senescence.
Pisum sativum (taxid: 3888)

>sp|Q8LBP4|ALB3_ARATH Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana GN=ALB3 PE=1 SV=2

 Score =  443 bits (1139), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/242 (86%), Positives = 225/242 (92%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQNLQPKIKAIQQRYAGNQERIQLETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSN
Sbjct: 169 MQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSN 228

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
           VANEGL TEGFFWIPSL GPT+IAARQSGSGISWL PFVDGHPPLGW+DT AYLVLPVLL
Sbjct: 229 VANEGLFTEGFFWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPVLL 288

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           + SQY SME+MKPPQTDDPAQKNTLLVFKFLPLMIGYF+LSVPSGLSIYW TNNVLSTAQ
Sbjct: 289 IASQYVSMEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWLTNNVLSTAQ 348

Query: 181 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAE 240
           QV+LRKLGGAKP + ENAS+II+AGRAKRS++QP  AG+RFRQLKE+EK  K NKA+  +
Sbjct: 349 QVYLRKLGGAKPNMDENASKIISAGRAKRSIAQPDDAGERFRQLKEQEKRSKKNKAVAKD 408

Query: 241 DV 242
            V
Sbjct: 409 TV 410

Required for the insertion of some light harvesting chlorophyll-binding proteins (LHCP) into the chloroplast thylakoid membrane. Required for the insertion of LHCB1, LHCB4.1 and LHCB5 proteins into thylakoid membrane, while it is not required for insertion of proteins PsbX, PsbW and PsbY.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYL3|ALB31_ARATH ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3

 Score =  312 bits (800), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 167/289 (57%), Positives = 212/289 (73%), Gaps = 34/289 (11%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           M++L P+IKAIQ+RYAG+QE+IQLET+RLY+ AG+NPLAGCLPTLATIPVWIGLY+ALSN
Sbjct: 153 MKSLTPQIKAIQERYAGDQEKIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 212

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
           VA+EGLLTEGFFWIPSL+GPTT+AARQ+GSGISWL PF++GHPPLGW DT AYLVLP+LL
Sbjct: 213 VADEGLLTEGFFWIPSLAGPTTVAARQNGSGISWLFPFIEGHPPLGWPDTLAYLVLPLLL 272

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           V SQY S+++M+  Q++DPA K++  V K LPLMIGYF+LSVPSGLS+YW TNN+LSTAQ
Sbjct: 273 VFSQYLSIQIMQSSQSNDPAMKSSQAVTKLLPLMIGYFALSVPSGLSLYWLTNNILSTAQ 332

Query: 181 QVWLRKLGGAKPVVTENASEIIT----AGRAKRSVSQP---------------------- 214
           QVWL+K GGAK  V E  + ++T      + ++S S+P                      
Sbjct: 333 QVWLQKYGGAKNPV-EKFTNLVTKEDKTQQIEKSFSEPLVQKSVSELKIPREKGGEKVTP 391

Query: 215 --SRAGDRFRQLKEEEKGKKLN-----KALPAEDVQTMNSASDSEGESD 256
              + G+RFR LKE+E  ++       KA  A   Q  + A + + +SD
Sbjct: 392 ECPKPGERFRLLKEQEAKRRREKEERQKAEAALSNQNTDKAHEQDEKSD 440

Probably required for the insertion of integral membrane proteins into the chloroplast thylakoid membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LKI3|ALB32_CHLRE Inner membrane ALBINO3-like protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.2 PE=2 SV=1

 Score =  258 bits (658), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 131/235 (55%), Positives = 166/235 (70%), Gaps = 21/235 (8%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           +Q LQP++K +Q +YA + E +QLET+RLY++AGVNPLAGC PTLATIPV+IGLY ALSN
Sbjct: 130 LQALQPRVKELQAKYADDPENLQLETARLYKEAGVNPLAGCFPTLATIPVFIGLYNALSN 189

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
            A EGLLTEGFFWIPSL GPTTI     G G+ WL+PF +G PP+GW + AAYLV+PVLL
Sbjct: 190 AAKEGLLTEGFFWIPSLGGPTTI-----GGGLEWLVPFENGAPPVGWANAAAYLVMPVLL 244

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           V SQYAS +++      DP+Q+    + KFLPLMIG+FSL+VPSGL++YWF NN+LST Q
Sbjct: 245 VASQYASQKIISSQNNQDPSQQQAQAILKFLPLMIGWFSLNVPSGLTLYWFVNNLLSTGQ 304

Query: 181 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLK-EEEKGKKLN 234
           Q++L      K  V  N  E I A         P+ AG     +K +EE+ KK+ 
Sbjct: 305 QLYL------KATVKVNIPEAIKA---------PATAGSSTPIVKPKEERVKKVT 344

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.1.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q8S339|ALB31_CHLRE Inner membrane ALBINO3-like protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.1 PE=3 SV=1

 Score =  234 bits (598), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 155/203 (76%), Gaps = 11/203 (5%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           +Q L+P+I  I+ R+  ++++IQ ETS LY QAGVNPLAGCLPTLATIP++IGL+ +L+N
Sbjct: 170 VQALKPRIDLIKDRFGEDKDKIQKETSVLYEQAGVNPLAGCLPTLATIPIFIGLFSSLTN 229

Query: 61  VANEGLL-TEGFFWIPSLSGPTTIAARQSGSGISWLLPF-VDGHPPLGWHDTAAYLVLPV 118
           VAN+GLL T+GF+++PSL+GPTT+A RQSG G SWL P   DG PP+GW D AAYL LP+
Sbjct: 230 VANDGLLDTQGFYFVPSLAGPTTMAMRQSGLGTSWLWPLGPDGAPPIGWEDAAAYLTLPL 289

Query: 119 LLVVSQYASMELMKPPQTDDPAQKN-----TLLVFKFLPLMIGYFSLSVPSGLSIYWFTN 173
           LLV  QYAS  +  PP   DP  +N      LLV  FLPLM+G+FSL+VP+GLS+Y+  N
Sbjct: 290 LLVAVQYASSSVTSPPI--DPKDENANTQRALLV--FLPLMVGWFSLNVPAGLSLYYLAN 345

Query: 174 NVLSTAQQVWLRKLGGAKPVVTE 196
            VLS+A Q++L+KLGGA  V+ E
Sbjct: 346 TVLSSAIQIYLKKLGGANVVMNE 368

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.2.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|B3QYV6|YIDC_CHLT3 Membrane protein insertase YidC OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=yidC PE=3 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 111/200 (55%), Gaps = 22/200 (11%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           M  LQP++KAIQ++Y  N E++Q E S +YR+AGVNPL GCLPT+  +P+   ++    +
Sbjct: 399 MAALQPQLKAIQEQYKDNPEKLQAEISGIYREAGVNPLGGCLPTVIQMPLLFAMFYVFRS 458

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
                L  EGF W   LS P +I            LPF    P  G H +    V+P+L+
Sbjct: 459 SIQ--LRQEGFLWSNDLSVPDSILD----------LPF--SIPLYGDHVS----VIPILM 500

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
            V+ +   +L    QT+D  +    +++ F  +M+ +F+ ++PSGL +Y+   NV S AQ
Sbjct: 501 GVAVFFQQKLTPSTQTNDQMK---FMMYLFPGMMLIFFN-NMPSGLGLYYLMFNVFSIAQ 556

Query: 181 QVWLRKLGGAKPVVTENASE 200
           Q ++ +    +PVV ++ S+
Sbjct: 557 QFYINQTTETEPVVLKDKSK 576

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418)

>sp|A1AV44|YIDC_PELPD Membrane protein insertase YidC OS=Pelobacter propionicus (strain DSM 2379) GN=yidC PE=3 SV=1

 Score =  111 bits (277), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 25/187 (13%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQ +QP + A++++Y  ++E +      LYR   VNPL GCLP L  IPV+  LY+AL  
Sbjct: 378 MQKIQPMMAALKEKYKDDREGMNKAVMELYRDHKVNPLGGCLPMLVQIPVFFALYKALM- 436

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
            + E      +FWI  LSGP  +  +  G      LPFV G              LP+L+
Sbjct: 437 FSIELRHAPFYFWITDLSGPDNLFGQMLG------LPFVIGP-------------LPLLM 477

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
             + +   ++   P T DP Q   +L    LP++  +  L+ PSGL +YW  NN+L+  Q
Sbjct: 478 GATMFIQQKMT--PSTMDPMQAKMMLA---LPVVFTFMFLNFPSGLVLYWLLNNILTIGQ 532

Query: 181 QVWLRKL 187
           Q+++ KL
Sbjct: 533 QMYINKL 539

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Pelobacter propionicus (strain DSM 2379) (taxid: 338966)

>sp|O66103|YIDC_TREPA Membrane protein insertase YidC OS=Treponema pallidum (strain Nichols) GN=yidC PE=3 SV=2

 Score =  107 bits (268), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 97/186 (52%), Gaps = 16/186 (8%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQ LQP ++ IQ+RY GN ++I  E ++LYR+A  NPL+GCLPTL  +P+   +Y+  +N
Sbjct: 446 MQELQPHMQRIQERYKGNTQKIHEEMAKLYREAQYNPLSGCLPTLVQMPIIFAMYRLFNN 505

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
                      +WIP LS   ++          W LPF    P   W       +LPVL 
Sbjct: 506 YFEFRGAMFIPYWIPDLSLADSV----------WTLPF--ALPVTQWTQMR---MLPVLY 550

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           VVSQ    +L + P T+      T++ +  +PL   +F    PSGL +YW   N ++  Q
Sbjct: 551 VVSQIMFSKLTQVPHTEQQKTSMTIMTY-VMPLFFFFFFYDAPSGLLVYWTAMNGVTLVQ 609

Query: 181 QVWLRK 186
           Q+ +++
Sbjct: 610 QLVMKR 615

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Treponema pallidum (strain Nichols) (taxid: 243276)

>sp|A0LLH3|YIDC_SYNFM Membrane protein insertase YidC OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=yidC PE=3 SV=1

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 99/187 (52%), Gaps = 26/187 (13%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           M+ +QPK+  I+++Y G++E++  E   LYR   VNP+ GCLP L  IPV+  LY+ L+ 
Sbjct: 390 MKKIQPKMTQIREKYKGDREKMNQELMGLYRTYKVNPMGGCLPMLLQIPVFFALYRMLNG 449

Query: 61  VANEGLLTEGF-FWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVL 119
                L  E F  WI  L+ P  +        I + +P++ G P           VL +L
Sbjct: 450 AVE--LRHEPFMLWIDDLTAPDRLP-------IGFDIPYLGGLP-----------VLTLL 489

Query: 120 LVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTA 179
           + ++ +   ++   P   DP Q   +++   +P+M   F ++ PSGL +YW  NNVLS A
Sbjct: 490 MGITMFIQQKMT--PSAGDPRQDQIMMI---MPVMFTVFFVNFPSGLVLYWLVNNVLSIA 544

Query: 180 QQVWLRK 186
           QQ W+ +
Sbjct: 545 QQYWVNR 551

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)

>sp|B2IDV5|YIDC_BEII9 Membrane protein insertase YidC OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=yidC PE=3 SV=1

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 107/199 (53%), Gaps = 15/199 (7%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           M+ +QP++ A+++RYA ++ + Q E   LY++  +NP+AGCLP L  IPV+  LY+ L  
Sbjct: 408 MKAIQPQMLALRERYADDKVKQQQELMELYKREKINPVAGCLPMLIQIPVFFALYKVLF- 466

Query: 61  VANEGLLTEGFFWIPSLSG--PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPV 118
           V  E      F WI  LS   PT I        +  LLPF   H P+  H   A  + P+
Sbjct: 467 VTIEMRQAPFFGWIRDLSAPDPTNIF------NLFGLLPFDPTHLPMIGH-FLAIGIWPL 519

Query: 119 LLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLST 178
           ++ VS +  M++   P+  DP QK    +F ++P++  +   + PSGL IYW  NN LS 
Sbjct: 520 IMGVSMFFQMKM--NPEPADPVQKQ---MFSWMPVIFTFMLGTFPSGLVIYWTWNNTLSV 574

Query: 179 AQQVWLRKLGGAKPVVTEN 197
            QQ  + K  G K  + +N
Sbjct: 575 LQQSLIMKRAGVKVELWDN 593

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) (taxid: 395963)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
156530446	452	chloroplast PPF-1 [Citrus trifoliata]	0.942	0.612	0.992	1e-153
224054791	451	inner membrane protein [Populus trichoca	0.945	0.616	0.854	1e-138
297746102	451	unnamed protein product [Vitis vinifera]	0.959	0.625	0.859	1e-135
225434998	455	PREDICTED: inner membrane protein PPF-1,	0.959	0.619	0.859	1e-135
449464930	453	PREDICTED: inner membrane protein PPF-1,	0.952	0.618	0.834	1e-134
255581095	449	Inner membrane protein PPF-1, chloroplas	0.945	0.619	0.857	1e-130
224104461	446	inner membrane protein [Populus trichoca	0.908	0.598	0.877	1e-128
356539022	450	PREDICTED: inner membrane protein PPF-1,	0.935	0.611	0.817	1e-127
297826255	458	hypothetical protein ARALYDRAFT_901831 [	0.945	0.606	0.795	1e-124
218187535	459	hypothetical protein OsI_00422 [Oryza sa	0.945	0.605	0.776	1e-124

>gi|156530446|gb|ABU75304.1| chloroplast PPF-1 [Citrus trifoliata]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 276/278 (99%), Positives = 277/278 (99%), Gaps = 1/278 (0%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN
Sbjct: 160 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 219

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
           VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL
Sbjct: 220 VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 279

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           VVSQYA ME+MKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ
Sbjct: 280 VVSQYA-MEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 338

Query: 181 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAE 240
           QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAE
Sbjct: 339 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAE 398

Query: 241 DVQTMNSASDSEGESDGEKGQGVLEEAYASNRSKQVPD 278
           DVQTMNSASDSEGESDGEKGQGVLEEAYASNRSKQVPD
Sbjct: 399 DVQTMNSASDSEGESDGEKGQGVLEEAYASNRSKQVPD 436

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054791|ref|XP_002298365.1| inner membrane protein [Populus trichocarpa] gi|222845623|gb|EEE83170.1| inner membrane protein [Populus trichocarpa]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/281 (85%), Positives = 255/281 (90%), Gaps = 3/281 (1%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSN
Sbjct: 155 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSN 214

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
           VANEG+LTEGFFWIPSL GPTTIAARQSGSGISWL PFVDGHPPLGWHDTAAYLVLPVLL
Sbjct: 215 VANEGVLTEGFFWIPSLGGPTTIAARQSGSGISWLFPFVDGHPPLGWHDTAAYLVLPVLL 274

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           + SQY SME+MKPPQTDDP QKNTLLVFKFLP+MIGYFSLSVPSGLSIYWFTNNVLSTAQ
Sbjct: 275 IASQYVSMEIMKPPQTDDPTQKNTLLVFKFLPIMIGYFSLSVPSGLSIYWFTNNVLSTAQ 334

Query: 181 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAE 240
           QVWLRKLGGAKPVV ENAS IITAGRAKRS SQP + GDRF+QLKE++K K L KALP E
Sbjct: 335 QVWLRKLGGAKPVVNENASGIITAGRAKRSASQPGQPGDRFKQLKEQDKSKTLRKALPTE 394

Query: 241 DVQTMNSASDSEGESDGE---KGQGVLEEAYASNRSKQVPD 278
            VQ ++SAS S+ +SD E   KG+ VLEE YAS+ SK+VPD
Sbjct: 395 GVQALDSASGSDEDSDEETNDKGEEVLEETYASSASKRVPD 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746102|emb|CBI16158.3| unnamed protein product [Vitis vinifera]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/285 (85%), Positives = 260/285 (91%), Gaps = 3/285 (1%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQNLQPKIKAIQ+RY GNQERIQLETSRLY+QAGVNPLAGC PTLATIPVWIGLYQALSN
Sbjct: 155 MQNLQPKIKAIQERYKGNQERIQLETSRLYKQAGVNPLAGCFPTLATIPVWIGLYQALSN 214

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
           VANEGLLTEGFFWIPSL GPTTIAARQSGSGISWL+PFVDGHPPLGW DTAAYLVLPVLL
Sbjct: 215 VANEGLLTEGFFWIPSLGGPTTIAARQSGSGISWLIPFVDGHPPLGWQDTAAYLVLPVLL 274

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           V+SQY SMELMKPPQTDDP+QKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ
Sbjct: 275 VISQYVSMELMKPPQTDDPSQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 334

Query: 181 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAE 240
           QVWLRKLGGAKPVV E+AS IITAGRAKRS SQP+RAGDRFRQLKEEEK KK++KALPAE
Sbjct: 335 QVWLRKLGGAKPVVNEDASGIITAGRAKRSASQPARAGDRFRQLKEEEKKKKISKALPAE 394

Query: 241 DVQTMNSASDSEGESDGE---KGQGVLEEAYASNRSKQVPDPSRP 282
           ++Q + S SDS+  SD E   KG  VLEEAY S+ SKQVP  + P
Sbjct: 395 EIQALASESDSDEGSDEETKDKGDDVLEEAYVSSGSKQVPQYAGP 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434998|ref|XP_002284077.1| PREDICTED: inner membrane protein PPF-1, chloroplastic isoform 1 [Vitis vinifera]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/285 (85%), Positives = 260/285 (91%), Gaps = 3/285 (1%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQNLQPKIKAIQ+RY GNQERIQLETSRLY+QAGVNPLAGC PTLATIPVWIGLYQALSN
Sbjct: 159 MQNLQPKIKAIQERYKGNQERIQLETSRLYKQAGVNPLAGCFPTLATIPVWIGLYQALSN 218

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
           VANEGLLTEGFFWIPSL GPTTIAARQSGSGISWL+PFVDGHPPLGW DTAAYLVLPVLL
Sbjct: 219 VANEGLLTEGFFWIPSLGGPTTIAARQSGSGISWLIPFVDGHPPLGWQDTAAYLVLPVLL 278

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           V+SQY SMELMKPPQTDDP+QKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ
Sbjct: 279 VISQYVSMELMKPPQTDDPSQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 338

Query: 181 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAE 240
           QVWLRKLGGAKPVV E+AS IITAGRAKRS SQP+RAGDRFRQLKEEEK KK++KALPAE
Sbjct: 339 QVWLRKLGGAKPVVNEDASGIITAGRAKRSASQPARAGDRFRQLKEEEKKKKISKALPAE 398

Query: 241 DVQTMNSASDSEGESDGE---KGQGVLEEAYASNRSKQVPDPSRP 282
           ++Q + S SDS+  SD E   KG  VLEEAY S+ SKQVP  + P
Sbjct: 399 EIQALASESDSDEGSDEETKDKGDDVLEEAYVSSGSKQVPQYAGP 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464930|ref|XP_004150182.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Cucumis sativus] gi|449524424|ref|XP_004169223.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Cucumis sativus]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/284 (83%), Positives = 252/284 (88%), Gaps = 4/284 (1%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSN
Sbjct: 158 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSN 217

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
           VANEGLLTEGFFWIPSL GPTTIAARQSG+GISWLLPFVDGHPPLGW DTAAYLVLPVLL
Sbjct: 218 VANEGLLTEGFFWIPSLGGPTTIAARQSGAGISWLLPFVDGHPPLGWSDTAAYLVLPVLL 277

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           V+SQY SMELMKPPQTDDPAQKNTLL+FKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ
Sbjct: 278 VISQYVSMELMKPPQTDDPAQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 337

Query: 181 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAE 240
           QVWLRKLGGAKPVV ENA  IITAGRAKR+  +  R GDRFRQ++E+EK  KL KA  +E
Sbjct: 338 QVWLRKLGGAKPVVNENAPGIITAGRAKRT-PESERTGDRFRQVREDEKKNKLTKAARSE 396

Query: 241 DVQTMNSASDSEGESDG---EKGQGVLEEAYASNRSKQVPDPSR 281
           D+QT+ S SD+E   DG   EKG+  LEEAYAS+  K VP  +R
Sbjct: 397 DIQTLASESDTEDGYDGETTEKGEDGLEEAYASSADKDVPAYNR 440

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581095|ref|XP_002531362.1| Inner membrane protein PPF-1, chloroplast precursor, putative [Ricinus communis] gi|223529022|gb|EEF31010.1| Inner membrane protein PPF-1, chloroplast precursor, putative [Ricinus communis]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/281 (85%), Positives = 252/281 (89%), Gaps = 3/281 (1%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSN
Sbjct: 153 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSN 212

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
           VANEGLLTEGFFWIPSL GPTTIAARQSGSGISWL PFVDGHPPLGW+DTAAYLVLPVLL
Sbjct: 213 VANEGLLTEGFFWIPSLGGPTTIAARQSGSGISWLFPFVDGHPPLGWYDTAAYLVLPVLL 272

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           VVSQY SME+MKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWF NNVLSTAQ
Sbjct: 273 VVSQYVSMEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFVNNVLSTAQ 332

Query: 181 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAE 240
           QVWLRKLGGAKPVV +NAS IITAGRAKRS SQP R GDRFRQLKEEEK KKL KALP +
Sbjct: 333 QVWLRKLGGAKPVVDQNASGIITAGRAKRSASQPQRGGDRFRQLKEEEKRKKLGKALPDD 392

Query: 241 DVQTM---NSASDSEGESDGEKGQGVLEEAYASNRSKQVPD 278
           + Q +   + + +   E    KG+ VLEEAYAS+ SKQVPD
Sbjct: 393 EAQALDSASDSDEESDEETKAKGEEVLEEAYASSSSKQVPD 433

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104461|ref|XP_002313443.1| inner membrane protein [Populus trichocarpa] gi|222849851|gb|EEE87398.1| inner membrane protein [Populus trichocarpa]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/269 (87%), Positives = 249/269 (92%), Gaps = 2/269 (0%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSN
Sbjct: 152 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSN 211

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
           VANEG+LTEGFFWIPSL GPTTIAARQSGSGISWL PFVDGHPPLGW+DTAAYLVLPVLL
Sbjct: 212 VANEGVLTEGFFWIPSLGGPTTIAARQSGSGISWLFPFVDGHPPLGWNDTAAYLVLPVLL 271

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           VVSQY SME+MKPPQTDDP QKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ
Sbjct: 272 VVSQYVSMEIMKPPQTDDPTQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 331

Query: 181 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAE 240
           QVWLR+LGGAKPVV ENAS IITAGRAKRS +QP + GDRFR LKEEEKGKKL+KAL +E
Sbjct: 332 QVWLRQLGGAKPVVNENASGIITAGRAKRSAAQPGQPGDRFR-LKEEEKGKKLSKALQSE 390

Query: 241 DVQTMNSASDSEG-ESDGEKGQGVLEEAY 268
           DVQ ++SASD +  E   +KG+ VLEEAY
Sbjct: 391 DVQALDSASDEDSDEETKDKGEEVLEEAY 419

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539022|ref|XP_003537999.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Glycine max]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/279 (81%), Positives = 244/279 (87%), Gaps = 4/279 (1%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQNLQPKIKAIQ RYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN
Sbjct: 155 MQNLQPKIKAIQDRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 214

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
           VANEGLLTEGF WIPSL GPTTIAARQSG+GISWL PFVDGHPPLGW DTAAYLVLP+LL
Sbjct: 215 VANEGLLTEGFLWIPSLGGPTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLVLPILL 274

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           VVSQY SME+MKPPQT DP+QKN LL+ KFLPLMIGYFSLSVPSGL+IYWF NNVLSTAQ
Sbjct: 275 VVSQYVSMEIMKPPQT-DPSQKNQLLILKFLPLMIGYFSLSVPSGLTIYWFINNVLSTAQ 333

Query: 181 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAE 240
           QVWLRKLGGAKPVV ENA  IITAGRAKRS  QP R G+RF+QLKEE+K KK++KALP E
Sbjct: 334 QVWLRKLGGAKPVVNENAGGIITAGRAKRSDLQPVRNGERFKQLKEEDKKKKVSKALPVE 393

Query: 241 DVQTMNSASDSEGESDGE---KGQGVLEEAYASNRSKQV 276
           +VQ + S S S+  SD E   KGQ   EEAYAS   ++V
Sbjct: 394 EVQPLASVSASDDGSDTESDNKGQEDAEEAYASKVGEEV 432

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826255|ref|XP_002881010.1| hypothetical protein ARALYDRAFT_901831 [Arabidopsis lyrata subsp. lyrata] gi|297326849|gb|EFH57269.1| hypothetical protein ARALYDRAFT_901831 [Arabidopsis lyrata subsp. lyrata]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/279 (79%), Positives = 245/279 (87%), Gaps = 1/279 (0%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQNLQPKIKAIQQRYAGNQERIQLETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSN
Sbjct: 165 MQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSN 224

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
           VANEGLLTEGFFWIPSL GPTTIAARQSGSGISWL PFVDGHPPLGW+DTAAYLVLPVLL
Sbjct: 225 VANEGLLTEGFFWIPSLGGPTTIAARQSGSGISWLFPFVDGHPPLGWYDTAAYLVLPVLL 284

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           + SQY SME+MKPPQTDDPAQKNTLLVFKFLPLMIGYF+LSVPSGLSIYWFTNNVLSTAQ
Sbjct: 285 IASQYVSMEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWFTNNVLSTAQ 344

Query: 181 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAE 240
           QV+LRKLGGAKP + ENAS+II+AGRAKRS++QP  AG+RFRQLKE+EK  K NKA+  +
Sbjct: 345 QVYLRKLGGAKPNMDENASKIISAGRAKRSIAQPDDAGERFRQLKEQEKRSKKNKAVAKD 404

Query: 241 DVQTMNSASDSEGESDGEKGQGVLEEAYASN-RSKQVPD 278
            V+ +  +     E   ++ +   E A AS+  SK +PD
Sbjct: 405 TVELLEESQSESEEGSDDEEEEAREGALASSTTSKPLPD 443

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218187535|gb|EEC69962.1| hypothetical protein OsI_00422 [Oryza sativa Indica Group]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/278 (77%), Positives = 240/278 (86%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQNLQP+IKAIQQRYAGNQERIQLET+RLY+QAGVNPLAGC PTLATIPVWIGLYQALSN
Sbjct: 166 MQNLQPQIKAIQQRYAGNQERIQLETARLYKQAGVNPLAGCFPTLATIPVWIGLYQALSN 225

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
           VANEGLLTEGFFWIPSL GPTTIAARQSG+GISWLLPFVDGHPPLGWHDT  YLVLPVLL
Sbjct: 226 VANEGLLTEGFFWIPSLGGPTTIAARQSGAGISWLLPFVDGHPPLGWHDTICYLVLPVLL 285

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           V SQ+ SME+MKPPQTDDP+QKNTLLV KFLP MIG+FSLSVPSGLSIYWFTNN+LSTAQ
Sbjct: 286 VASQFVSMEIMKPPQTDDPSQKNTLLVLKFLPFMIGWFSLSVPSGLSIYWFTNNILSTAQ 345

Query: 181 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAE 240
           QVWLRKLGGAKPVV +  S IITAGRAKR+ +QP++ G+RF+QLKEEE  +K NKAL A 
Sbjct: 346 QVWLRKLGGAKPVVNQGGSGIITAGRAKRTSAQPAQPGERFKQLKEEESKRKGNKALAAG 405

Query: 241 DVQTMNSASDSEGESDGEKGQGVLEEAYASNRSKQVPD 278
           D     S S+ E   D    +G  EE Y S+ +K++P+
Sbjct: 406 DSDLSASTSEDEESDDEITEEGGPEERYNSSSNKKLPN 443

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2053230	462	ALB3 "ALBINO 3" [Arabidopsis t	0.945	0.601	0.716	7.7e-103
TAIR|locus:2809836	499	ALB4 "AT1G24490" [Arabidopsis	0.724	0.426	0.665	1.5e-76
UNIPROTKB|Q3AG58	223	CHY_0004 "Sporulation associat	0.265	0.349	0.423	6.9e-23
TIGR_CMR|CHY_0004	223	CHY_0004 "sporulation associat	0.265	0.349	0.423	6.9e-23
UNIPROTKB|Q71VQ8	287	yidC1 "Membrane protein insert	0.261	0.268	0.428	5.3e-21
UNIPROTKB|Q5HUK1	530	yidC "Membrane protein inserta	0.261	0.145	0.384	8.5e-18
TIGR_CMR|CJE_1038	530	CJE_1038 "inner membrane prote	0.261	0.145	0.384	8.5e-18
UNIPROTKB|P65626	366	yidC "Membrane protein inserta	0.251	0.202	0.487	7.4e-17
UNIPROTKB|Q9KVY4	541	yidC "Membrane protein inserta	0.258	0.140	0.417	1.5e-16
TIGR_CMR|VC_0004	541	VC_0004 "inner membrane protei	0.258	0.140	0.417	1.5e-16

TAIR|locus:2053230 ALB3 "ALBINO 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
 Identities = 200/279 (71%), Positives = 221/279 (79%)

Query:     1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
             MQNLQPKIKAIQQRYAGNQERIQLETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSN
Sbjct:   169 MQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSN 228

Query:    61 VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYXXXXXXX 120
             VANEGL TEGFFWIPSL GPT+IAARQSGSGISWL PFVDGHPPLGW+DT AY       
Sbjct:   229 VANEGLFTEGFFWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPVLL 288

Query:   121 XXSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
               SQY SME+MKPPQTDDPAQKNTLLVFKFLPLMIGYF+LSVPSGLSIYW TNNVLSTAQ
Sbjct:   289 IASQYVSMEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWLTNNVLSTAQ 348

Query:   181 QVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQXXXXXXXXXXXXXXPAE 240
             QV+LRKLGGAKP + ENAS+II+AGRAKRS++QP  AG+RFRQ                +
Sbjct:   349 QVYLRKLGGAKPNMDENASKIISAGRAKRSIAQPDDAGERFRQLKEQEKRSKKNKAVAKD 408

Query:   241 DVQTMNSAXXXXXXXXXXKGQGVLEEAYASNR-SKQVPD 278
              V+ +  +          + +   E A AS+  SK +P+
Sbjct:   409 TVELVEESQSESEEGSDDEEEEAREGALASSTTSKPLPE 447

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0090342 "regulation of cell aging" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2809836 ALB4 "AT1G24490" [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 145/218 (66%), Positives = 180/218 (82%)

Query:     1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
             M++L P+IKAIQ+RYAG+QE+IQLET+RLY+ AG+NPLAGCLPTLATIPVWIGLY+ALSN
Sbjct:   153 MKSLTPQIKAIQERYAGDQEKIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 212

Query:    61 VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYXXXXXXX 120
             VA+EGLLTEGFFWIPSL+GPTT+AARQ+GSGISWL PF++GHPPLGW DT AY       
Sbjct:   213 VADEGLLTEGFFWIPSLAGPTTVAARQNGSGISWLFPFIEGHPPLGWPDTLAYLVLPLLL 272

Query:   121 XXSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
               SQY S+++M+  Q++DPA K++  V K LPLMIGYF+LSVPSGLS+YW TNN+LSTAQ
Sbjct:   273 VFSQYLSIQIMQSSQSNDPAMKSSQAVTKLLPLMIGYFALSVPSGLSLYWLTNNILSTAQ 332

Query:   181 QVWLRKLGGAKPVVTENASEIIT----AGRAKRSVSQP 214
             QVWL+K GGAK  V E  + ++T      + ++S S+P
Sbjct:   333 QVWLQKYGGAKNPV-EKFTNLVTKEDKTQQIEKSFSEP 369

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

UNIPROTKB|Q3AG58 CHY_0004 "Sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 172 (65.6 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 33/78 (42%), Positives = 49/78 (62%)

Query:     1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
             MQ LQPK++ IQ++Y  + ++ Q     LY++ GVNP++GCLP L  +P+ I LY+AL N
Sbjct:    56 MQELQPKMQEIQKKYKNDPQKQQQALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYN 115

Query:    61 VANEGLLTEGFFWIPSLS 78
                       FFWI ++S
Sbjct:   116 FKYLNPAHAKFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|CHY_0004 CHY_0004 "sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 172 (65.6 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 33/78 (42%), Positives = 49/78 (62%)

Query:     1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
             MQ LQPK++ IQ++Y  + ++ Q     LY++ GVNP++GCLP L  +P+ I LY+AL N
Sbjct:    56 MQELQPKMQEIQKKYKNDPQKQQQALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYN 115

Query:    61 VANEGLLTEGFFWIPSLS 78
                       FFWI ++S
Sbjct:   116 FKYLNPAHAKFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0030436 "asexual sporulation" evidence=ISS

UNIPROTKB|Q71VQ8 yidC1 "Membrane protein insertase YidC 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 183 (69.5 bits), Expect = 5.3e-21, Sum P(2) = 5.3e-21
 Identities = 36/84 (42%), Positives = 54/84 (64%)

Query:     1 MQNLQPKIKAIQQRYAGN----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQ 56
             M NLQPKIK +Q++Y+      ++++Q ET RLY++  VNP+ GCLP L  +P+ +G YQ
Sbjct:    94 MTNLQPKIKELQEKYSSKDNETKQKLQQETMRLYQENSVNPMMGCLPLLIQMPILLGFYQ 153

Query:    57 ALSNVANEGLLTEGFFWIPSLSGP 80
             A+S  A   + T+ F W+  L  P
Sbjct:   154 AISRTAE--IKTDSFLWM-QLGNP 174

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5HUK1 yidC "Membrane protein insertase YidC" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 158 (60.7 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
 Identities = 30/78 (38%), Positives = 49/78 (62%)

Query:     1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
             +++L PK+K I++RY G+ +++ +    LY++ G NP++GCLP L  IP++  +Y+ L N
Sbjct:   365 LKDLAPKMKDIRERYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN 424

Query:    61 VANEGLLTEGFFWIPSLS 78
              A E       FWI  LS
Sbjct:   425 -AIELKAAPWAFWIHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_1038 CJE_1038 "inner membrane protein, 60 kDa" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 158 (60.7 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
 Identities = 30/78 (38%), Positives = 49/78 (62%)

Query:     1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
             +++L PK+K I++RY G+ +++ +    LY++ G NP++GCLP L  IP++  +Y+ L N
Sbjct:   365 LKDLAPKMKDIRERYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN 424

Query:    61 VANEGLLTEGFFWIPSLS 78
              A E       FWI  LS
Sbjct:   425 -AIELKAAPWAFWIHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|P65626 yidC "Membrane protein insertase YidC" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 177 (67.4 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
 Identities = 38/78 (48%), Positives = 52/78 (66%)

Query:     1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
             MQ LQP+IKA+Q++Y  +++R+ LE  +L R+ G NP+ GCLP LA IPV++GLY  L +
Sbjct:    69 MQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRS 128

Query:    61 VANEGLLTEGFFWIPSLS 78
               N    T G F  P LS
Sbjct:   129 F-NR---TTGGFGQPHLS 142

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

UNIPROTKB|Q9KVY4 yidC "Membrane protein insertase YidC" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 150 (57.9 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
 Identities = 33/79 (41%), Positives = 48/79 (60%)

Query:     1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
             M+ LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL  
Sbjct:   381 MRMLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALME 440

Query:    61 VANEGLLTEGFF-WIPSLS 78
                  L    FF WI  LS
Sbjct:   441 SVE--LRHSPFFGWIHDLS 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0004 VC_0004 "inner membrane protein, 60 kDa" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 150 (57.9 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
 Identities = 33/79 (41%), Positives = 48/79 (60%)

Query:     1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
             M+ LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL  
Sbjct:   381 MRMLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALME 440

Query:    61 VANEGLLTEGFF-WIPSLS 78
                  L    FF WI  LS
Sbjct:   441 SVE--LRHSPFFGWIHDLS 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBP4	ALB3_ARATH	No assigned EC number	0.8636	0.8231	0.5238	yes	no
Q9FY06	PPF1_PEA	No assigned EC number	0.8201	0.9387	0.6244	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_I1339	inner membrane protein (451 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XVI.3177.1	hypothetical protein (66 aa)	•						•		0.686
	eugene3.00020856	hypothetical protein (483 aa)	•								0.442
	estExt_Genewise1_v1.C_440299	RecName- Full=50S ribosomal protein L34; (137 aa)	•								0.418

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
pfam02096	193	pfam02096, 60KD_IMP, 60Kd inner membrane protein	9e-58
TIGR03592	181	TIGR03592, yidC_oxa1_cterm, membrane protein inser	2e-54
PRK01318	521	PRK01318, PRK01318, membrane protein insertase; Pr	6e-43
COG0706	314	COG0706, YidC, Preprotein translocase subunit YidC	4e-37
PRK00145	223	PRK00145, PRK00145, putative inner membrane protei	3e-30
PRK01622	256	PRK01622, PRK01622, OxaA-like protein precursor; V	8e-24
PRK01315	329	PRK01315, PRK01315, putative inner membrane protei	1e-23
PRK01001	795	PRK01001, PRK01001, putative inner membrane protei	9e-23
PRK03449	304	PRK03449, PRK03449, putative inner membrane protei	3e-22
PRK02944	255	PRK02944, PRK02944, OxaA-like protein precursor; V	2e-20
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	1e-11
PRK02463	307	PRK02463, PRK02463, OxaA-like protein precursor; P	5e-08
PRK02201	357	PRK02201, PRK02201, putative inner membrane protei	2e-07
PRK02654	375	PRK02654, PRK02654, putative inner membrane protei	3e-07
MTH00207	572	MTH00207, ND5, NADH dehydrogenase subunit 5; Provi	0.002

>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein

 Score =  183 bits (467), Expect = 9e-58
 Identities = 65/188 (34%), Positives = 99/188 (52%), Gaps = 31/188 (16%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQ LQP+IK IQ++Y  + +++Q E  +LY++ GVNPLAGCLP L  +P++I LY+AL N
Sbjct: 32  MQELQPEIKEIQEKYKDDPQKLQQEMMKLYKEHGVNPLAGCLPMLIQLPIFIALYRALRN 91

Query: 61  VAN-EGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVL 119
           +A    L T GF WI  LS P                   D            Y +LP+L
Sbjct: 92  MAELRSLETAGFLWIKDLSAP-------------------DPP----------YFILPIL 122

Query: 120 LVVSQYASMELMKPPQTDDPAQKNTL-LVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLST 178
             ++ +   +L       D  Q   + ++   +PL+  +F L+ P+GL +YW  +N+ S 
Sbjct: 123 AGLTMFLQQKLSPSQDPPDLQQSAQMKIMMYIMPLIFLFFFLNFPAGLVLYWIVSNLFSL 182

Query: 179 AQQVWLRK 186
            QQ+ +RK
Sbjct: 183 VQQLIIRK 190

Length = 193

>gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain

 Score =  174 bits (444), Expect = 2e-54
 Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 35/186 (18%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQ LQPK+K IQ++Y  + +++Q E  +LY++ GVNPL GCLP L  +P++I LYQ L  
Sbjct: 31  MQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPIFIALYQVLRR 90

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
                L    F WI  LS P                                Y +LP+L+
Sbjct: 91  S--IELRHAPFLWIQDLSAP------------------------------DPYYILPILM 118

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
            V+ +   +L      D   QK  +     +P+M  +F LS P+GL +YW  +N+ +  Q
Sbjct: 119 GVTMFLQQKLSPSGPPDPAQQKIMM---YIMPVMFLFFFLSFPAGLVLYWVVSNLFTIIQ 175

Query: 181 QVWLRK 186
           Q+ + +
Sbjct: 176 QLIINR 181

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here [Protein fate, Protein and peptide secretion and trafficking]. Length = 181

>gnl|CDD|234942 PRK01318, PRK01318, membrane protein insertase; Provisional

 Score =  153 bits (389), Expect = 6e-43
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 49/209 (23%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           M+ LQPK++ ++++Y  + +++Q E   LY++  VNPL GCLP L  IP++  LY+ L  
Sbjct: 352 MKVLQPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVL-- 409

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGW-HDTAAY------ 113
                                +I  R +        PF      +GW HD +A       
Sbjct: 410 -------------------LVSIELRHA--------PF------IGWIHDLSAPDPYFIL 436

Query: 114 --LVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWF 171
              +LP+L+ ++ +   +L   P   DP Q     + KF+PL+  +F LS P+GL +YW 
Sbjct: 437 HIGLLPILMGITMFLQQKLN--PTPTDPMQAK---IMKFMPLIFTFFFLSFPAGLVLYWI 491

Query: 172 TNNVLSTAQQVWLRKLGGAKPVVTENASE 200
            NN+L+  QQ  + +    K ++  N  +
Sbjct: 492 VNNLLTIIQQYLINRRLEKKKLLAANKKK 520

Length = 521

>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

 Score =  133 bits (337), Expect = 4e-37
 Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 31/187 (16%)

Query: 1   MQNLQPKIKAIQQRYAGN-QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALS 59
           MQ LQPKIK IQ++Y G  +++ Q E  +LY++  VNPLAGCLP L  +P++I LY  L 
Sbjct: 139 MQELQPKIKEIQEKYKGTDKQKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLR 198

Query: 60  NVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVL 119
           +            WI  LS P                       P         L+LP+L
Sbjct: 199 STVELR-GAPFLGWITDLSLPD----------------------PDYI------LLLPIL 229

Query: 120 LVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTA 179
             V+ +   +L     +     +   +    +P++  +F  + P+GL +YW  +N+ S  
Sbjct: 230 AGVTMFLQQKLSPRNLSTPQDPQQKKM-MYIMPIIFTFFFFNFPAGLVLYWIVSNLFSIL 288

Query: 180 QQVWLRK 186
           QQ  L K
Sbjct: 289 QQYILNK 295

Length = 314

>gnl|CDD|234665 PRK00145, PRK00145, putative inner membrane protein translocase component YidC; Provisional

 Score =  113 bits (284), Expect = 3e-30
 Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 34/198 (17%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           M  +QP+IK +Q +Y  + +++Q E  +LY++ GVNPL GCLP L   P+ I LY   +N
Sbjct: 60  MNEIQPEIKKLQAKYKNDPQKLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNN 119

Query: 61  VANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 120
           +   G+    F WI  L+ P                                  +LP+L 
Sbjct: 120 L--TGINGVSFLWIKDLAKP------------------------------DITWILPILS 147

Query: 121 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
             + Y S  LM    +    Q  T+ +   + + +G  S    S L +YW   N++   Q
Sbjct: 148 GATTYLSGYLMTKADSSQAGQMKTMNI--GMSIFMGVMSWKFKSALVLYWVIGNLIQIIQ 205

Query: 181 QVWLRKLGGAKPVVTENA 198
             +++KL   K V  + A
Sbjct: 206 TYFIKKLELKKKVEAKAA 223

Length = 223

>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated

 Score = 97.1 bits (242), Expect = 8e-24
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 41/193 (21%)

Query: 1   MQNLQPKIKAIQQRY-----AGNQERIQLETSRLYRQAGVNPLA-GCLPTLATIPVWIGL 54
           M  ++P++  IQ +         Q+  Q E   LY+   +NPLA GCLP L  +P+    
Sbjct: 93  MAVMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAF 152

Query: 55  YQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYL 114
           Y A+     E + +  F W                        F  GH            
Sbjct: 153 YYAIR--RTEEIASHSFLW------------------------FNLGHAD---------H 177

Query: 115 VLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNN 174
           +LP++  ++ +  M++ +   T     +   +    +P MI + S + PS L +YW T  
Sbjct: 178 ILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMILFMSFAAPSALVLYWITGG 237

Query: 175 VLSTAQQVWLRKL 187
           +    Q + LRK+
Sbjct: 238 LFLMGQTIVLRKV 250

Length = 256

>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional

 Score = 98.3 bits (245), Expect = 1e-23
 Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 36/199 (18%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQ +QPK+K IQ++Y G++ER+  E  +LY++ G NPL+ CLP L  +P++  LY+ L +
Sbjct: 71  MQEIQPKMKKIQEKYKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDS 130

Query: 61  VANE----GLLTEG---------FFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGW 107
            A+     G +             F  P L+  T + A  +G+    ++           
Sbjct: 131 AASRGDGIGPINPPLLESFRHAHIFGAP-LAA-TFLQALNAGNTAVQVVA---------- 178

Query: 108 HDTAAYLVLPVLLVVSQ-YASMELMK---PPQT-DDPAQKNTLLVFKFLPLMIGYFSLSV 162
                  VL +L+  SQ    ++LM    PP+    P  +   ++    PLM     ++ 
Sbjct: 179 ------AVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAF 232

Query: 163 PSGLSIYWFTNNVLSTAQQ 181
           P G+  YW T+NV +  QQ
Sbjct: 233 PVGVLFYWLTSNVWTMGQQ 251

Length = 329

>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase component YidC; Provisional

 Score = 97.9 bits (244), Expect = 9e-23
 Identities = 66/221 (29%), Positives = 99/221 (44%), Gaps = 42/221 (19%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 60
           MQ L P I+ IQQ+Y    +R Q+E   LY+   VNP+ GCLP L  +P  I ++  L  
Sbjct: 605 MQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLK- 663

Query: 61  VANEGLLTEGFF---WIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLP 117
             +  LL    F   WI +L+ P  +         SW  P         W     + +LP
Sbjct: 664 --SSFLLRGASFIPGWIDNLTAPDVL--------FSWETPI--------WFIGNEFHLLP 705

Query: 118 VLLVVSQYASMELM----KPPQTDDPAQKNTL-----LVFKFLPLMIGYFSLSVPSGLSI 168
           +LL V  +A  ++     K P TD   Q+  +     L+F F   M   F    PSGL+I
Sbjct: 706 ILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTF---MFYNF----PSGLNI 758

Query: 169 YWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKR 209
           YW ++ +L   QQ    K+  +K +     +E++   +  R
Sbjct: 759 YWLSSMLLGVIQQWVTNKILDSKHL----KNEVVPNKKKHR 795

Length = 795

>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase component YidC; Provisional

 Score = 93.6 bits (233), Expect = 3e-22
 Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 34/212 (16%)

Query: 1   MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL-- 58
           MQ LQP+IKA+Q++Y  +++++ LE  +L ++ G NP+ GCLP LA IPV++GL+  L  
Sbjct: 61  MQELQPQIKALQKKYGNDRQKMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRS 120

Query: 59  -----SNVANEGLLTEGFFWIPS-LSGPTTIA----ARQSGSGIS--------WLLPFVD 100
                +     G+  E     P+ +     +     AR  G+ +S         L  FVD
Sbjct: 121 FNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDARLFGAPLSAYITMPRSGLDAFVD 180

Query: 101 GHPPLGWHDTAAYLVLPVLLVVS------QYASMELMKPPQTDDP--AQKNTLLVFKFLP 152
                        + +P++++          AS+         +P  A  N L ++   P
Sbjct: 181 FTRT-----NIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMMNKLALW-VFP 234

Query: 153 LMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWL 184
           L +      +P  + +YW +NN+ +  QQ ++
Sbjct: 235 LGVLVGGPFLPLAILLYWVSNNIWTFGQQHYV 266

Length = 304

>gnl|CDD|179508 PRK02944, PRK02944, OxaA-like protein precursor; Validated

 Score = 87.9 bits (218), Expect = 2e-20
 Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 48/203 (23%)

Query: 1   MQNLQPKIKAIQQRY----AGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQ 56
           MQ LQP+++ ++++Y       Q+++Q E  +L+++ GVNPLAGCLP    +P+ I  Y 
Sbjct: 88  MQALQPEMQKLKEKYSSKDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYH 147

Query: 57  ALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVL 116
           A+   +        F W                        F  G           Y +L
Sbjct: 148 AIMRTSEIS--KHSFLW------------------------FDLGQAD-------PYYIL 174

Query: 117 PVLLVVSQYASMEL-MKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNV 175
           P++  ++ +   +L M      +P     L +   +P+MI  F+++ P+ LS+YW   N+
Sbjct: 175 PIVAGITTFIQQKLMMAGTAGQNPQMAMMLWL---MPIMILIFAINFPAALSLYWVVGNI 231

Query: 176 LSTAQ-------QVWLRKLGGAK 191
              AQ       ++   K GG+K
Sbjct: 232 FMIAQTYLIKGPEIKASKAGGSK 254

Length = 255

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 37/209 (17%)

Query: 3   NLQPKIKAIQQRYAGN------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQ 56
           +++PK KA+++ Y G       +E  Q +   L ++ G NPLAGC+P L  IPV++GLYQ
Sbjct: 63  HIRPKRKALREEYKGKTDEASIRELQQKQ-KDLNKEYGYNPLAGCVPALIQIPVFLGLYQ 121

Query: 57  ALSNVAN--EGLLTEGFFWIPSLSGPTT---IAARQSGSGISWLLPFVDGHPP-----LG 106
            L  +A    GL       I  L+       +  R         LP     P      LG
Sbjct: 122 VLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVP----LPAYVSMPAEQLAYLG 177

Query: 107 W-HDTAAYLVLPVLLVVSQYA----SMELMKPPQTDDPAQKNTLLVFKFL---------- 151
               T    VLP+ +  + +     +M   +  QT+D      + + KFL          
Sbjct: 178 TTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIF 237

Query: 152 PLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
           PL +G      P+ +++YW  NN+ +  Q
Sbjct: 238 PLSLGLTG-PFPTAIALYWVANNLWTLIQ 265

Length = 429

>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 46/189 (24%), Positives = 70/189 (37%), Gaps = 43/189 (22%)

Query: 1   MQNLQPKIKAIQQRY--AGNQER---IQLETSRLYRQAGVNPLA--GCLPTLATIPVWIG 53
           M  L+P  + I +R   A  QE     Q E     R+ G++ L   GCLP L  +P +  
Sbjct: 93  MAYLKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSA 152

Query: 54  LYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAY 113
           LY A      +G+ T  F  I                              LG       
Sbjct: 153 LYFAAQY--TKGVSTSTFLGID-----------------------------LGSPSLVLT 181

Query: 114 LVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTN 173
            ++ VL     + SM  +   Q +    K  + +   +P+M+  FS S P+G+ +YW   
Sbjct: 182 AIIGVLYFFQSWLSMMGVPEEQRE--QMKAMMYM---MPIMMVVFSFSSPAGVGLYWLVG 236

Query: 174 NVLSTAQQV 182
              S  QQ+
Sbjct: 237 GFFSIIQQL 245

Length = 307

>gnl|CDD|235012 PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 43/207 (20%), Positives = 74/207 (35%), Gaps = 61/207 (29%)

Query: 1   MQNLQPKIKAIQQRYAG------NQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGL 54
            + LQ K   I  +Y         ++R Q E   LY++  ++P +  +    T+P++I +
Sbjct: 162 QEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAV 221

Query: 55  YQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYL 114
           Y+ + +             +PS+    T       S  SW   F        W     YL
Sbjct: 222 YRVVQS-------------LPSIK--VTTWLGIDLSATSWQEIFAG-----NW----IYL 257

Query: 115 VLPVLLVVSQYASMELMKPPQ----------TDDPAQKNTL-----------LVFKFLPL 153
            + +++V  Q  S  L   PQ          T +  +K  L           +VF F   
Sbjct: 258 PILIIVVPVQALSQLL---PQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIF--- 311

Query: 154 MIGYFSLSVPSGLSIYWFTNNVLSTAQ 180
               F +   +G+ IYW    + +  Q
Sbjct: 312 ----FGVIFAAGVQIYWIIGGIWTILQ 334

Length = 357

>gnl|CDD|235058 PRK02654, PRK02654, putative inner membrane protein translocase component YidC; Provisional

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 1   MQNLQP----KIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQ 56
           M+  QP    +   IQ+RY  + ++ Q E  +L ++ G NPLAGCLP L  +P+   L+ 
Sbjct: 56  MKIAQPVMQKRQAEIQERYKNDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFA 114

Query: 57  AL 58
            L
Sbjct: 115 TL 116

Length = 375

>gnl|CDD|164753 MTH00207, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 75  PSLSGPT---TIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVV-SQYASMEL 130
            SL+ P    T+ A  SGS ++W LP     P L       Y +LP+L+V      +   
Sbjct: 417 KSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQ----YKLLPLLVVTLGALLAWLF 472

Query: 131 MKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI-YWFTNNVLSTAQQVWLRKLGG 189
             P  T  P   N  L      LM     LS    +S     ++N L    Q WL  LG 
Sbjct: 473 TTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGA 532

Length = 572

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
PRK01001	795	putative inner membrane protein translocase compon	100.0
PRK00145	223	putative inner membrane protein translocase compon	100.0
TIGR03592	181	yidC_oxa1_cterm membrane protein insertase, YidC/O	100.0
PRK02944	255	OxaA-like protein precursor; Validated	100.0
PRK02463	307	OxaA-like protein precursor; Provisional	100.0
PRK01315	329	putative inner membrane protein translocase compon	100.0
PRK01318	521	membrane protein insertase; Provisional	100.0
PF02096	198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	100.0
PRK01622	256	OxaA-like protein precursor; Validated	100.0
COG0706	314	YidC Preprotein translocase subunit YidC [Intracel	100.0
PRK03449	304	putative inner membrane protein translocase compon	100.0
PRK02201	357	putative inner membrane protein translocase compon	100.0
PRK00247	429	putative inner membrane protein translocase compon	100.0
PRK02654	375	putative inner membrane protein translocase compon	99.95
KOG1239	372	consensus Inner membrane protein translocase invol	99.71
KOG1239	372	consensus Inner membrane protein translocase invol	98.41
COG1422	201	Predicted membrane protein [Function unknown]	86.29
PF09803	80	DUF2346: Uncharacterized conserved protein (DUF234	80.8

>PRK01001 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1e-44  Score=367.45  Aligned_cols=182  Identities=30%  Similarity=0.574  Sum_probs=153.1

Q ss_pred             CcccchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcc--cccCCC
Q 022630            1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF--WIPSLS   78 (294)
Q Consensus         1 Mq~lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gfl--Wi~dLs   78 (294)
                      |+.|||+|++||+|||+|++++|+|+|+|||+|||||++||||+||||||||+||++|+++.  +++..+|+  |++||+
T Consensus       605 Mq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~si--eLRgasFLpgWI~DLS  682 (795)
T PRK01001        605 MQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSF--LLRGASFIPGWIDNLT  682 (795)
T ss_pred             HHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhH--HhcCCchhhhhHhhcc
Confidence            78999999999999999999999999999999999999999999999999999999999976  47788898  999999


Q ss_pred             CchhHhhhhcCCCccccc--cccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCC--CCCHHhHHHHHHHHHHHHH
Q 022630           79 GPTTIAARQSGSGISWLL--PFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ--TDDPAQKNTLLVFKFLPLM  154 (294)
Q Consensus        79 ~pD~i~~~~~g~~l~~~~--p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~~--~~~p~q~~~k~m~~~mPlm  154 (294)
                      .+|++        ++|..  +|++.          ++.|||||+++++|++++++....  ..++.++.++.|+++||+|
T Consensus       683 apDpl--------f~~~~~i~FiGd----------~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPIm  744 (795)
T PRK01001        683 APDVL--------FSWETPIWFIGN----------EFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALL  744 (795)
T ss_pred             CCCcc--------cccccccccccc----------chhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHH
Confidence            99964        22332  23321          577999999999999998754221  1222344456677899999


Q ss_pred             HHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCCCCccccch-hhHHhhhhcc
Q 022630          155 IGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENA-SEIITAGRAK  208 (294)
Q Consensus       155 ~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~~~k~~~~e~~-~~~~~~~~~k  208 (294)
                      +++|++++||||+|||++||+|+++|++++++.      .++++ ++++++|++|
T Consensus       745 f~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k~------~~~kKi~a~ie~nkkk  793 (795)
T PRK01001        745 FTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNKI------LDSKHLKNEVVPNKKK  793 (795)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh------cchhHHHHHHHhhhhc
Confidence            999999999999999999999999999999985      44544 8999998765

>PRK00145 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=4.3e-43  Score=317.45  Aligned_cols=156  Identities=32%  Similarity=0.622  Sum_probs=140.7

Q ss_pred             CcccchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCCCc
Q 022630            1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGP   80 (294)
Q Consensus         1 Mq~lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflWi~dLs~p   80 (294)
                      |+.+|||+++||+|||+|++++|+|+++|||||||||++||+|+|+|+|||+++|+++++++  ++.++||+|++||+.+
T Consensus        60 m~~iqP~~~~i~~k~k~d~~~~~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~--~~~~~~flW~~dLt~~  137 (223)
T PRK00145         60 MNEIQPEIKKLQAKYKNDPQKLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLT--GINGVSFLWIKDLAKP  137 (223)
T ss_pred             HHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhh--hccCCCccChhhccCc
Confidence            67899999999999999999999999999999999999999999999999999999999986  4788999999999998


Q ss_pred             hhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHh
Q 022630           81 TTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSL  160 (294)
Q Consensus        81 D~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPlm~~~f~~  160 (294)
                      |                              ||++||+++++++|++++.+...  ...+.+.++.|++++|+++++++.
T Consensus       138 D------------------------------p~~iLPil~~~~~~l~~~~~~~~--~~~~~~~~k~m~~~~~i~~~~~~~  185 (223)
T PRK00145        138 D------------------------------ITWILPILSGATTYLSGYLMTKA--DSSQAGQMKTMNIGMSIFMGVMSW  185 (223)
T ss_pred             c------------------------------hHHHHHHHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHHHHHHHHH
Confidence            8                              68899999999999998876433  122234567889999999999999


Q ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHHhcCC
Q 022630          161 SVPSGLSIYWFTNNVLSTAQQVWLRKLGGA  190 (294)
Q Consensus       161 ~~PsgL~LYWitSnl~ti~Q~~ilr~~~~~  190 (294)
                      ++|+||++||++||+|+++|+++++++..+
T Consensus       186 ~~Pagl~lYW~~s~~~si~Q~~~l~~~~~~  215 (223)
T PRK00145        186 KFKSALVLYWVIGNLIQIIQTYFIKKLELK  215 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            999999999999999999999999986433

>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain

Probab=100.00  E-value=3.7e-42  Score=302.00  Aligned_cols=151  Identities=38%  Similarity=0.797  Sum_probs=137.4

Q ss_pred             CcccchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCCCc
Q 022630            1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGP   80 (294)
Q Consensus         1 Mq~lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflWi~dLs~p   80 (294)
                      |+.+|||+++|++||++|++++++|+++|||||||||++||+|+|+|+|||+++|+++|++.  ++.++||+|++||+.+
T Consensus        31 m~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pif~~~~~~lr~~~--~l~~~~flW~~dL~~~  108 (181)
T TIGR03592        31 MQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPIFIALYQVLRRSI--ELRHAPFLWIKDLSAP  108 (181)
T ss_pred             HHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhhH--HhccCCCcCccccCcc
Confidence            57899999999999999999999999999999999999999999999999999999999985  5889999999999998


Q ss_pred             hhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHh
Q 022630           81 TTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSL  160 (294)
Q Consensus        81 D~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPlm~~~f~~  160 (294)
                      |                              ||++||+++++++++++++.....+ ++  +.++.|++++|+++++++.
T Consensus       109 D------------------------------p~~iLPii~~~~~~~~~~~~~~~~~-~~--~~~k~m~~~~p~~~~~~~~  155 (181)
T TIGR03592       109 D------------------------------PYYILPILMGATMFLQQKLSPSGPP-DP--AQQKIMMYIMPLMFLFFFL  155 (181)
T ss_pred             c------------------------------HHHHHHHHHHHHHHHHHHhcCCCCC-CH--HHHHHHHHHHHHHHHHHHH
Confidence            7                              7899999999999999987543222 22  2466788999999999999


Q ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHH
Q 022630          161 SVPSGLSIYWFTNNVLSTAQQVWLRK  186 (294)
Q Consensus       161 ~~PsgL~LYWitSnl~ti~Q~~ilr~  186 (294)
                      ++|+|+++||++||+|+++|++++++
T Consensus       156 ~~pa~l~lYw~~s~~~sl~Q~~~l~~  181 (181)
T TIGR03592       156 SFPAGLVLYWVVSNLFTIIQQLIINR  181 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999874

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.

>PRK02944 OxaA-like protein precursor; Validated

Probab=100.00  E-value=7.2e-42  Score=315.00  Aligned_cols=151  Identities=29%  Similarity=0.700  Sum_probs=134.5

Q ss_pred             CcccchhHHHHHHHhhcC----HHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcccccC
Q 022630            1 MQNLQPKIKAIQQRYAGN----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPS   76 (294)
Q Consensus         1 Mq~lqPel~~IqeKyk~d----~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflWi~d   76 (294)
                      |+++|||+++||+||++|    ++++|+|+++|||||||||++||+|+|+|+||||++|++++++.  ++.++||+|+ |
T Consensus        88 m~~iqPe~~~iq~kyk~~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~--~l~~~~flW~-d  164 (255)
T PRK02944         88 MQALQPEMQKLKEKYSSKDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTS--EISKHSFLWF-D  164 (255)
T ss_pred             HHHccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhH--HHhhcCCCcc-c
Confidence            688999999999999865    56899999999999999999999999999999999999999886  4778999999 9


Q ss_pred             CCCchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHH
Q 022630           77 LSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIG  156 (294)
Q Consensus        77 Ls~pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPlm~~  156 (294)
                      |+.+|                              ||++||++++++++++.++.......  .+..|+.|++++|+|++
T Consensus       165 Ls~~D------------------------------p~~iLPil~~~~~~~~~~~~~~~~~~--~~~~~~~m~~i~p~~~~  212 (255)
T PRK02944        165 LGQAD------------------------------PYYILPIVAGITTFIQQKLMMAGTAG--QNPQMAMMLWLMPIMIL  212 (255)
T ss_pred             cCcch------------------------------HHHHHHHHHHHHHHHHHHhcccCCCC--CCHHHHHHHHHHHHHHH
Confidence            99887                              78999999999999998864332211  12346678999999999


Q ss_pred             HHHhhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 022630          157 YFSLSVPSGLSIYWFTNNVLSTAQQVWLRK  186 (294)
Q Consensus       157 ~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~  186 (294)
                      +|+.++|+||.+||++||+|+++|++++++
T Consensus       213 ~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~~  242 (255)
T PRK02944        213 IFAINFPAALSLYWVVGNIFMIAQTYLIKG  242 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999997

>PRK02463 OxaA-like protein precursor; Provisional

Probab=100.00  E-value=7.4e-41  Score=315.06  Aligned_cols=167  Identities=27%  Similarity=0.439  Sum_probs=140.0

Q ss_pred             CcccchhHHHHHHHhhcC-----HHHHHHHHHHHHHHhCCCCCc--ChHHHHHHHHHHHHHHHHHHhhhhhccccCCccc
Q 022630            1 MQNLQPKIKAIQQRYAGN-----QERIQLETSRLYRQAGVNPLA--GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFW   73 (294)
Q Consensus         1 Mq~lqPel~~IqeKyk~d-----~~k~qqE~~kLyKk~gvnPl~--GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflW   73 (294)
                      |+.||||+++||+||+++     ++++|+|+++|||||||||++  ||+|+|||+|||+|+|++++..  +++.+++|||
T Consensus        93 M~~lqPe~~~Iq~Kyk~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flw  170 (307)
T PRK02463         93 MAYLKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLG  170 (307)
T ss_pred             HHHhChhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeee
Confidence            678999999999999863     346789999999999999998  8999999999999999999976  4688999999


Q ss_pred             ccCCCCchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHH
Q 022630           74 IPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPL  153 (294)
Q Consensus        74 i~dLs~pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPl  153 (294)
                      + ||+.||                                ++||++++++++++..++.... .+.+.+.|+.|+++||+
T Consensus       171 i-dL~~p~--------------------------------~iLpii~~v~~~~q~~~~~~~~-~~~q~~~mk~m~~~~Pi  216 (307)
T PRK02463        171 I-DLGSPS--------------------------------LVLTAIIGVLYFFQSWLSMMGV-PEEQREQMKAMMYMMPI  216 (307)
T ss_pred             e-ecCchh--------------------------------HHHHHHHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHHHH
Confidence            9 888654                                5899999999999887654332 22233457889999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCCCCccccchhhHHhhhhccc
Q 022630          154 MIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKR  209 (294)
Q Consensus       154 m~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~~~k~~~~e~~~~~~~~~~~k~  209 (294)
                      |+++|++++|+||+|||++||+|+++|++++++++      +...++.++++.+|.
T Consensus       217 m~~~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~------~pk~~~~i~~e~~~~  266 (307)
T PRK02463        217 MMVVFSFSSPAGVGLYWLVGGFFSIIQQLITTYIL------KPRLRKQIAEEFAKN  266 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999753      334456676665553

>PRK01315 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=4e-40  Score=312.21  Aligned_cols=181  Identities=29%  Similarity=0.514  Sum_probs=130.8

Q ss_pred             CcccchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCCCc
Q 022630            1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGP   80 (294)
Q Consensus         1 Mq~lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflWi~dLs~p   80 (294)
                      |+.||||+++|++||++|++++++|+++|||||||||++||+|+|+|+||||++|++|++++.. .... .+|.+++...
T Consensus        71 m~~lqPe~~~iq~kyk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~-~~~~-~~~~~~~~~s  148 (329)
T PRK01315         71 MQEIQPKMKKIQEKYKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASR-GDGI-GPINPPLLES  148 (329)
T ss_pred             HHHccHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc-cchhhhHHHh
Confidence            6789999999999999999999999999999999999999999999999999999999986531 1111 2233332210


Q ss_pred             hhHhhhhcCCCccccccccCCCCCCCc-chhhHHHHHHHHHHHHHHHHhHhc-C----CCCCCCHHhHHHHHHHHHHHHH
Q 022630           81 TTIAARQSGSGISWLLPFVDGHPPLGW-HDTAAYLVLPVLLVVSQYASMELM-K----PPQTDDPAQKNTLLVFKFLPLM  154 (294)
Q Consensus        81 D~i~~~~~g~~l~~~~p~~~~~~~~g~-~~~~p~~iLPiL~~~~~~ls~~i~-~----~~~~~~p~q~~~k~m~~~mPlm  154 (294)
                       .-.+..+|.++..  ++.... ..|+ ...+.++|||+++++++|++++.+ .    .....+++.+.+++|+++||+|
T Consensus       149 -~~~~~~fg~~L~~--~f~~~~-~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim  224 (329)
T PRK01315        149 -FRHAHIFGAPLAA--TFLQAL-NAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLM  224 (329)
T ss_pred             -hhccccccccccc--cccccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHH
Confidence             0000111211110  111000 0111 123467899999999999886532 1    1122355556678899999999


Q ss_pred             HHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 022630          155 IGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKL  187 (294)
Q Consensus       155 ~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~  187 (294)
                      +++|++++|+||+|||++||+|+++|++++.+-
T Consensus       225 ~~~~~~~fPaGL~LYW~~snl~si~Qq~~v~r~  257 (329)
T PRK01315        225 FLVSGIAFPVGVLFYWLTSNVWTMGQQFYVIRN  257 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999987664

>PRK01318 membrane protein insertase; Provisional

Probab=100.00  E-value=8.3e-41  Score=334.05  Aligned_cols=153  Identities=37%  Similarity=0.775  Sum_probs=136.2

Q ss_pred             CcccchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcc-cccCCCC
Q 022630            1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSG   79 (294)
Q Consensus         1 Mq~lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gfl-Wi~dLs~   79 (294)
                      |+.+||+|++||+||++|++++|+|+|+|||+|||||++||||+|+|+||||++|++++++.  ++..++|+ ||+||+.
T Consensus       352 m~~lqP~~~~i~~kyk~d~~k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~--el~~~~fl~Wi~DLs~  429 (521)
T PRK01318        352 MKVLQPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSI--ELRHAPFIGWIHDLSA  429 (521)
T ss_pred             HHHhhHHHHHHHHHhHhhHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHH--HhccCchheeeccccc
Confidence            78899999999999999999999999999999999999999999999999999999999986  47888998 9999999


Q ss_pred             chhHhhhhcCCCccccccccCCCCCCCcchhhHHHHH-----HHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHH
Q 022630           80 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVL-----PVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLM  154 (294)
Q Consensus        80 pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iL-----PiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPlm  154 (294)
                      +|                              ||+||     |++++++++++++++..+  .++.|   +.+|.+||++
T Consensus       430 ~D------------------------------p~~il~~~~lPil~~~~~~~~~~l~~~~--~~~~q---~kim~~mpi~  474 (521)
T PRK01318        430 PD------------------------------PYFILHIGLLPILMGITMFLQQKLNPTP--TDPMQ---AKIMKFMPLI  474 (521)
T ss_pred             cc------------------------------cchhHHHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHH
Confidence            98                              34455     999999999999876432  35554   2345569999


Q ss_pred             HHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCC
Q 022630          155 IGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGA  190 (294)
Q Consensus       155 ~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~~~  190 (294)
                      +++|++++||||+|||++||+++++|++++++.++.
T Consensus       475 ~~~~~~~~PagL~lYW~~sn~~si~Q~~~l~~~~~~  510 (521)
T PRK01318        475 FTFFFLSFPAGLVLYWIVNNLLTIIQQYLINRRLEK  510 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            999999999999999999999999999999997544

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes

Probab=100.00  E-value=1.9e-40  Score=293.62  Aligned_cols=163  Identities=39%  Similarity=0.737  Sum_probs=144.6

Q ss_pred             CcccchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhh-hccccCCcccccCCCC
Q 022630            1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN-EGLLTEGFFWIPSLSG   79 (294)
Q Consensus         1 Mq~lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~-~~l~~~gflWi~dLs~   79 (294)
                      |++++||+++|++||++|++++++|+++|||||||||++||+|+|+|+|||+++|+++|+++. +++.++||+|++||+.
T Consensus        32 ~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pif~~~~~~lr~~~~~~~~~~~g~lw~~dL~~  111 (198)
T PF02096_consen   32 MQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPIFIGLFRALRRMAEVPSLATGGFLWFPDLTA  111 (198)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCceeChHhcCC
Confidence            578999999999999999999999999999999999999999999999999999999999976 5678899999999999


Q ss_pred             chhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCC--CCCCCHHhHHHHHHHHHHHHHHHH
Q 022630           80 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKP--PQTDDPAQKNTLLVFKFLPLMIGY  157 (294)
Q Consensus        80 pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~--~~~~~p~q~~~k~m~~~mPlm~~~  157 (294)
                      +|..                         ..+||++||+++++++++++++...  ....+...+.++.|++++|+++++
T Consensus       112 ~D~~-------------------------~~~p~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~k~m~~~~~~~~~~  166 (198)
T PF02096_consen  112 PDPT-------------------------MGLPYFILPILAGASMFLNQELSMKNSKQKSPQQAKMMKIMLYIMPLMFLF  166 (198)
T ss_pred             CCcc-------------------------chhHHHHHHHHHHHHHHHHHHHHHhccccCCccccHHHHHHHHHHHHHHHH
Confidence            9831                         1238999999999999999987532  222234455677888999999999


Q ss_pred             HHhhhhhHHHHHHHHhHHHHHHHHHHHHHhc
Q 022630          158 FSLSVPSGLSIYWFTNNVLSTAQQVWLRKLG  188 (294)
Q Consensus       158 f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~  188 (294)
                      ++.++|+|+.+||++||+|+++|++++++.+
T Consensus       167 ~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~~  197 (198)
T PF02096_consen  167 FTSFFPAALFLYWITSNLFSLLQTLILRRPF  197 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999853

Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane

>PRK01622 OxaA-like protein precursor; Validated

Probab=100.00  E-value=3.4e-40  Score=304.07  Aligned_cols=154  Identities=27%  Similarity=0.550  Sum_probs=134.2

Q ss_pred             CcccchhHHHHHHHhhc--CHH---HHHHHHHHHHHHhCCCCCc-ChHHHHHHHHHHHHHHHHHHhhhhhccccCCcccc
Q 022630            1 MQNLQPKIKAIQQRYAG--NQE---RIQLETSRLYRQAGVNPLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWI   74 (294)
Q Consensus         1 Mq~lqPel~~IqeKyk~--d~~---k~qqE~~kLyKk~gvnPl~-GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflWi   74 (294)
                      |+++|||+++||+||++  |++   ++|+|+++|||||||||++ ||+|+|+|+|||+++|+++|++.  ++.++||+|+
T Consensus        93 m~~iqP~l~~iq~kyk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~  170 (256)
T PRK01622         93 MAVMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF  170 (256)
T ss_pred             HHHhCHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee
Confidence            57899999999999986  433   5789999999999999999 99999999999999999999975  5889999999


Q ss_pred             cCCCCchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHH
Q 022630           75 PSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLM  154 (294)
Q Consensus        75 ~dLs~pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPlm  154 (294)
                       ||+.+|                                +|||+++++++++++++..+...+..+++.++.|++++|++
T Consensus       171 -dLs~~D--------------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi~  217 (256)
T PRK01622        171 -NLGHAD--------------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAM  217 (256)
T ss_pred             -CCcchh--------------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHH
Confidence             898775                                38999999999999887543222222334567889999999


Q ss_pred             HHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhcC
Q 022630          155 IGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGG  189 (294)
Q Consensus       155 ~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~~  189 (294)
                      +++++.++|+||++||++||+|+++|++++++.++
T Consensus       218 ~~~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~~~  252 (256)
T PRK01622        218 ILFMSFAAPSALVLYWITGGLFLMGQTIVLRKVME  252 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999753

>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

Probab=100.00  E-value=6.6e-40  Score=310.17  Aligned_cols=159  Identities=36%  Similarity=0.653  Sum_probs=137.9

Q ss_pred             CcccchhHHHHHHHhh-cCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcc-cccCCC
Q 022630            1 MQNLQPKIKAIQQRYA-GNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLS   78 (294)
Q Consensus         1 Mq~lqPel~~IqeKyk-~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gfl-Wi~dLs   78 (294)
                      |+.+||++++|+|||| +|++++|+|+|+|||||||||++||+|+|+|+|||+++|+++++..  .+...+|+ |+.||+
T Consensus       139 m~~lqP~~~~i~~kyk~~~~~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~--~l~~~~f~~w~~dl~  216 (314)
T COG0706         139 MQELQPKIKEIQEKYKGTDKQKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTV--ELRGAPFLGWITDLS  216 (314)
T ss_pred             HHHhChhHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhcc--cccccchhhhhhccc
Confidence            7889999999999999 9999999999999999999999999999999999999999999986  46777887 999999


Q ss_pred             CchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 022630           79 GPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYF  158 (294)
Q Consensus        79 ~pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPlm~~~f  158 (294)
                      .+|+.                            ..+++|+++++++|+++++...... +++.+.++.|+++||+++.++
T Consensus       217 ~~dp~----------------------------~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~~  267 (314)
T COG0706         217 LPDPD----------------------------YILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTFF  267 (314)
T ss_pred             CCCCc----------------------------hhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHHH
Confidence            88721                            2336699999999999997654321 222234667899999999999


Q ss_pred             HhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCC
Q 022630          159 SLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGA  190 (294)
Q Consensus       159 ~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~~~  190 (294)
                      ++++|+||.|||++||+|+++|++++++.+.+
T Consensus       268 ~~~~PaGL~LYW~~~n~fsi~Qq~ii~~~~~~  299 (314)
T COG0706         268 FFNFPAGLVLYWIVSNLFSILQQYILNKPLEK  299 (314)
T ss_pred             HHHhHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Confidence            99999999999999999999999999986433

>PRK03449 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=5.6e-39  Score=301.71  Aligned_cols=188  Identities=27%  Similarity=0.456  Sum_probs=128.8

Q ss_pred             CcccchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhh--cccc-----CCccc
Q 022630            1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANE--GLLT-----EGFFW   73 (294)
Q Consensus         1 Mq~lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~--~l~~-----~gflW   73 (294)
                      |+.+||++++|++||++|++++++|+++|||||||||++||+|+|+|+|||+++|+++|+++..  ++..     +.+.+
T Consensus        61 m~~lqP~l~~iq~kyk~~~~~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~  140 (304)
T PRK03449         61 MQELQPQIKALQKKYGNDRQKMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRN  140 (304)
T ss_pred             HHHccHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccc
Confidence            6789999999999999999999999999999999999999999999999999999999998532  1111     00001


Q ss_pred             ccC--CCCch---hHhhhhcCCCcc-ccc-cc--cCCCCCCCcchh-hHHHHHHHHHHHHHHHHhHhcCCC----CCCCH
Q 022630           74 IPS--LSGPT---TIAARQSGSGIS-WLL-PF--VDGHPPLGWHDT-AAYLVLPVLLVVSQYASMELMKPP----QTDDP  139 (294)
Q Consensus        74 i~d--Ls~pD---~i~~~~~g~~l~-~~~-p~--~~~~~~~g~~~~-~p~~iLPiL~~~~~~ls~~i~~~~----~~~~p  139 (294)
                      .++  ++..|   ...+..+|.+++ |.. +.  ++.....+-.|. +++++|||++++++|++++++...    +..++
T Consensus       141 ~~~~~~~~~~~~sFl~~~~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~  220 (304)
T PRK03449        141 TPNYVFSAEDVQSFLDARLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANP  220 (304)
T ss_pred             cccccccHHHHHHHhhhhhcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCc
Confidence            000  00000   001112232222 110 00  000000111111 245678999999999998764211    11233


Q ss_pred             HhH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhc
Q 022630          140 AQK-NTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLG  188 (294)
Q Consensus       140 ~q~-~~k~m~~~mPlm~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~  188 (294)
                      .+. .++.|+++||+|+++|++++|+||.|||++||+|+++||+++++.+
T Consensus       221 ~~~~m~k~M~~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~~~  270 (304)
T PRK03449        221 QTAMMNKLALWVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGKI  270 (304)
T ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            333 3478899999999999999999999999999999999999998743

>PRK02201 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=3.2e-38  Score=301.71  Aligned_cols=163  Identities=20%  Similarity=0.392  Sum_probs=132.9

Q ss_pred             CcccchhHHHHHHHhhcC------HHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcccc
Q 022630            1 MQNLQPKIKAIQQRYAGN------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWI   74 (294)
Q Consensus         1 Mq~lqPel~~IqeKyk~d------~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflWi   74 (294)
                      |++||||+++||+||++|      ++++|+|+++|||||||||++||+|+|+|+|||+|+|++++.+.  ++....|+|+
T Consensus       162 m~~lqPel~~Iq~Kyk~~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~--~l~~~~flgi  239 (357)
T PRK02201        162 QEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLP--SIKVTTWLGI  239 (357)
T ss_pred             HHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhH--hhccCCCccc
Confidence            688999999999999977      77899999999999999999999999999999999999999986  4778899999


Q ss_pred             cCCCCchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcC----C---CCC----CCHHhHH
Q 022630           75 PSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMK----P---PQT----DDPAQKN  143 (294)
Q Consensus        75 ~dLs~pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~----~---~~~----~~p~q~~  143 (294)
                       ||+.+|..          ..+           .+..+|+++++++++++++++.+++    .   ..+    +.++.+.
T Consensus       240 -dLs~~~~~----------~~~-----------~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~  297 (357)
T PRK02201        240 -DLSATSWQ----------EIF-----------AGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKK  297 (357)
T ss_pred             -ccCCCChh----------hhc-----------cccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHH
Confidence             89987621          000           0112567777888877777765421    0   011    1123345


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 022630          144 TLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKL  187 (294)
Q Consensus       144 ~k~m~~~mPlm~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~  187 (294)
                      ++.|+++||+++++|++++|+||.|||++||+|+++|+++++++
T Consensus       298 ~~~m~~impi~~~~~~~~~PaGL~LYW~~snl~tI~Qq~~i~~~  341 (357)
T PRK02201        298 QNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQTLGIHYF  341 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999974

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=100.00  E-value=6.4e-38  Score=305.04  Aligned_cols=199  Identities=25%  Similarity=0.411  Sum_probs=139.5

Q ss_pred             CcccchhHHHHHHHhhcC-----HHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhh--hccccCCccc
Q 022630            1 MQNLQPKIKAIQQRYAGN-----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFW   73 (294)
Q Consensus         1 Mq~lqPel~~IqeKyk~d-----~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~--~~l~~~gflW   73 (294)
                      |+.|||++++||+||+++     ++++++|+++|||+|||||++||||+|||+|||||+|++|++|+.  +|+.+..+.|
T Consensus        61 m~~lqPel~~iq~kyk~~~d~e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~  140 (429)
T PRK00247         61 AAHIRPKRKALREEYKGKTDEASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQP  140 (429)
T ss_pred             HHHcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            578999999999999875     457899999999999999999999999999999999999999974  3444433455


Q ss_pred             ccCCCCchhHh---hhhcCCCccccccccCC-CCCCCc-chhhHHHHHHHHHHHH--HHHHhHhcCC----C-CCCCH--
Q 022630           74 IPSLSGPTTIA---ARQSGSGISWLLPFVDG-HPPLGW-HDTAAYLVLPVLLVVS--QYASMELMKP----P-QTDDP--  139 (294)
Q Consensus        74 i~dLs~pD~i~---~~~~g~~l~~~~p~~~~-~~~~g~-~~~~p~~iLPiL~~~~--~~ls~~i~~~----~-~~~~p--  139 (294)
                      +..|+..|.-.   +..+|++|+-.+.+..+ ...+|. ...+.+++||++++++  +++++.+...    . ...++  
T Consensus       141 ig~l~~~~v~sfl~a~~fGvpL~~~~sm~~e~~~~~~~~~~~v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~  220 (429)
T PRK00247        141 IGFLTSEEVESFLQGRVFNVPLPAYVSMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFA  220 (429)
T ss_pred             cccCCHHHHHHHHhccccCCCcccccccchhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHH
Confidence            66666554322   33456555522111000 000111 1123467888555444  4566554311    1 11223  


Q ss_pred             --HhHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHhHHHHHHHHHHHHHhcCCCCccccchh
Q 022630          140 --AQKNTLLVFKFLPLMIGYFSLS--VPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS  199 (294)
Q Consensus       140 --~q~~~k~m~~~mPlm~~~f~~~--~PsgL~LYWitSnl~ti~Q~~ilr~~~~~k~~~~e~~~  199 (294)
                        +++.|..|++++|+|+++++++  +|+||+|||++||+|+++||+++..++..+++++++.+
T Consensus       221 ~~~~k~m~~m~~~~Pim~~~~g~~~~~PaallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~  284 (429)
T PRK00247        221 VGMLKFLIVMAILAPIFPLSLGLTGPFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFK  284 (429)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchH
Confidence              3444667779999999988776  79999999999999999999988877777788887663

>PRK02654 putative inner membrane protein translocase component YidC; Provisional

Probab=99.95  E-value=5e-28  Score=227.38  Aligned_cols=196  Identities=27%  Similarity=0.486  Sum_probs=124.8

Q ss_pred             CcccchhH----HHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhh-------------
Q 022630            1 MQNLQPKI----KAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN-------------   63 (294)
Q Consensus         1 Mq~lqPel----~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~-------------   63 (294)
                      |+.+||+|    ++|++||++|++++|+|+++|||||| ||++||||+|||+|||+++|+++|...-             
T Consensus        56 M~~LQPemqkk~~eIqeKYKdDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~spf~~~~y~~~l~i~p  134 (375)
T PRK02654         56 MKIAQPVMQKRQAEIQERYKNDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGSPFADVNYTVNLQVLP  134 (375)
T ss_pred             HHHhCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHhCccccccceeecccCC
Confidence            67899998    47999999999999999999999999 9999999999999999999999997321             


Q ss_pred             -h---ccccCCcc------cccC---------------CCCchhH---hhhhcCCCc--------------cc-------
Q 022630           64 -E---GLLTEGFF------WIPS---------------LSGPTTI---AARQSGSGI--------------SW-------   94 (294)
Q Consensus        64 -~---~l~~~gfl------Wi~d---------------Ls~pD~i---~~~~~g~~l--------------~~-------   94 (294)
                       +   ......|-      ++.|               |..-|..   .....|.++              .|       
T Consensus       135 ~~qi~~v~~~~~~~~~~~i~~~~~~h~~~~a~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~~  214 (375)
T PRK02654        135 SEQIAAVQPQPFKSKPQNIFITDGVHFPVIASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEE  214 (375)
T ss_pred             HHHHhhhcCCCcCCCCceEEEecCccceEEEEcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCce
Confidence             0   00011110      0111               0000000   000000000              01       


Q ss_pred             ----------------------ccccc---------CCCCCCCcc--hh-h--HHHHHHHHHHHHHHHHhHhcCCCCCCC
Q 022630           95 ----------------------LLPFV---------DGHPPLGWH--DT-A--AYLVLPVLLVVSQYASMELMKPPQTDD  138 (294)
Q Consensus        95 ----------------------~~p~~---------~~~~~~g~~--~~-~--p~~iLPiL~~~~~~ls~~i~~~~~~~~  138 (294)
                                            .+|-+         ....-.|..  |. +  -.+++-+..+++.|+++.+.......+
T Consensus       215 ~~~~~~~g~~~al~pgd~ti~~~ipg~aa~~gflfi~alg~vg~~~~dg~i~wdi~~mi~~fg~sl~~~q~lsg~~~~~~  294 (375)
T PRK02654        215 RVKVSEDGTIEALAPGDATIQGTIPGLAANSGFLFIKALGQVGFYDVDGAINWDILIMVLGFGVSLYLSQVLSGQGMPAN  294 (375)
T ss_pred             eEEECCCCcEEEecCCceEEEEeecceecccCceehHhhcccCccCCCCceeHHHHHHHHHhhhhhhhhHhhhcCCCCCC
Confidence                                  01100         000001111  11 1  234566677888888887654433445


Q ss_pred             HHhHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCCCCccccchhhHHhhh
Q 022630          139 PAQKNTLLVFKFLPLMI--GYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAG  205 (294)
Q Consensus       139 p~q~~~k~m~~~mPlm~--~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~~~k~~~~e~~~~~~~~~  205 (294)
                      |+|.   .+..+.|+|+  .|+++-+|||+++||++.|+|..+|+++|.+     -++.|+...+.++.
T Consensus       295 ~qq~---t~nkitpv~~sgmflffplpagvllym~ianifq~~qt~~l~r-----eplpenlqk~~~~~  355 (375)
T PRK02654        295 PQQS---TANKITPVMFSGMFLFFPLPAGVLLYMVIANIFQTLQTFLLSR-----EPLPENLQKILDEQ  355 (375)
T ss_pred             hhHH---HHHhhhhHHHhhhHhcccchhHHHHHHHHHHHHHHHHHHHHhc-----CcChHHHHHHHHHh
Confidence            5554   5677789885  3445568999999999999999999999987     47778776666553

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=8.2e-17  Score=155.77  Aligned_cols=150  Identities=22%  Similarity=0.408  Sum_probs=124.4

Q ss_pred             cccchhHHHHHHHhhcC------HHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhh--hccccCCccc
Q 022630            2 QNLQPKIKAIQQRYAGN------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFW   73 (294)
Q Consensus         2 q~lqPel~~IqeKyk~d------~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~--~~l~~~gflW   73 (294)
                      ..+.|+|.++.++.+.-      ....|+|+++++++||++| ....-+++|.|+|++.|.+|+.|+.  +++.++|++|
T Consensus       132 s~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~w  210 (372)
T KOG1239|consen  132 SKIFPEMPSLGEELGEAAQDNNALLSWQEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLW  210 (372)
T ss_pred             hhcCcccHHHHHHHHhhhccccchHHHHHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhHHh
Confidence            46789999999988631      3356779999999999999 9988889999999999999999984  4567889999


Q ss_pred             ccCCCCchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCC-CCCCHHhHHHHHHHHHHH
Q 022630           74 IPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPP-QTDDPAQKNTLLVFKFLP  152 (294)
Q Consensus        74 i~dLs~pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~-~~~~p~q~~~k~m~~~mP  152 (294)
                      ++||+.+|                              |++++|+++.++....+++.... ...+.....|+.++.++|
T Consensus       211 f~dLt~~d------------------------------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (372)
T KOG1239|consen  211 FPDLTGPD------------------------------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILP  260 (372)
T ss_pred             cccccccC------------------------------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHhh
Confidence            99999887                              68899999999988888764321 111222334677888899


Q ss_pred             HHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 022630          153 LMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK  186 (294)
Q Consensus       153 lm~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~  186 (294)
                      +.++.++.++|+|+.+||+    |+++|..++|.
T Consensus       261 ll~~~~t~~~~~a~~~ywl----~s~~~~~vlr~  290 (372)
T KOG1239|consen  261 LLSLASTMQFPSAIFVYWL----FSLVQGLVLRS  290 (372)
T ss_pred             hhhhhhhhhhhhhHHhhhh----hHHHHHHHhHH
Confidence            9999999999999999999    99999999775

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=3.9e-07  Score=88.66  Aligned_cols=187  Identities=21%  Similarity=0.154  Sum_probs=149.5

Q ss_pred             cccchhHHHHHHHhhcCHH--HHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCCC
Q 022630            2 QNLQPKIKAIQQRYAGNQE--RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG   79 (294)
Q Consensus         2 q~lqPel~~IqeKyk~d~~--k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflWi~dLs~   79 (294)
                      ...+|-...+...+...+.  .+|.++..+|+-.|++++++|++..+-++.++..|.+... .+....+.+++|++.+..
T Consensus        65 ~~~~~~~~~~~~~~~~~~p~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~  143 (372)
T KOG1239|consen   65 ATVSPIIEGILLALSSWRPVATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGE  143 (372)
T ss_pred             HhhchhHHHHHHHhcccCchhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHH
Confidence            4456777777777877765  8999999999999999999999999999999999999986 434456788999998887


Q ss_pred             chhHhhhhcCCCccccccccCCCCCCCcc-hhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 022630           80 PTTIAARQSGSGISWLLPFVDGHPPLGWH-DTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYF  158 (294)
Q Consensus        80 pD~i~~~~~g~~l~~~~p~~~~~~~~g~~-~~~p~~iLPiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPlm~~~f  158 (294)
                      .-..++...+..+.|..++...+.+.||. +...+.+++..+.++.|+.++.|..+..+.+.+     ...++|-+..+.
T Consensus       144 ~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~-----g~~wf~dLt~~d  218 (372)
T KOG1239|consen  144 ELGEAAQDNNALLSWQEEQKLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSFTTG-----GLLWFPDLTGPD  218 (372)
T ss_pred             HHHhhhccccchHHHHHHHHhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhccccccchh-----hHHhcccccccC
Confidence            66666666777888988888888888888 878888899999999999998887444333322     456677787888


Q ss_pred             HhhhhhHHHHHHHHhHHHHHHHHHHHH-HhcCCCCcc
Q 022630          159 SLSVPSGLSIYWFTNNVLSTAQQVWLR-KLGGAKPVV  194 (294)
Q Consensus       159 ~~~~PsgL~LYWitSnl~ti~Q~~ilr-~~~~~k~~~  194 (294)
                      -+..+.++..||+++++..-.|+.+.. .+.+..+.+
T Consensus       219 p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (372)
T KOG1239|consen  219 PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSF  255 (372)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHH
Confidence            888999999999999999999987766 444443333

>COG1422 Predicted membrane protein [Function unknown]

Probab=86.29  E-value=0.82  Score=41.11  Aligned_cols=61  Identities=18%  Similarity=0.213  Sum_probs=32.6

Q ss_pred             CcccchhHHHHHHHhh-----cCH---HHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhh
Q 022630            1 MQNLQPKIKAIQQRYA-----GNQ---ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNV   61 (294)
Q Consensus         1 Mq~lqPel~~IqeKyk-----~d~---~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~   61 (294)
                      |+++|-+++|.|++++     +|.   +|+|+++++......==.--.+-||+.++++.|-+|-=++..
T Consensus        74 m~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfkPM~~~~v~tI~~F~Wl~~~  142 (201)
T COG1422          74 MKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFKPMLYISVLTIPFFAWLRWF  142 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            5678889999998884     343   355555444433221000012346666655555555544443

>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function

Probab=80.80  E-value=3.8  Score=31.65  Aligned_cols=41  Identities=17%  Similarity=0.222  Sum_probs=18.4

Q ss_pred             hhhhhHHHHHHHHhHHHHHHHHHHHHHhcCCCCccccchhhHHh
Q 022630          160 LSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIIT  203 (294)
Q Consensus       160 ~~~PsgL~LYWitSnl~ti~Q~~ilr~~~~~k~~~~e~~~~~~~  203 (294)
                      .+||.|+..|+   |.=.....+++......-|+-.+.....++
T Consensus        15 v~fPI~~~~~f---N~pe~f~~~v~~~~~~~~ppe~~~~~~ele   55 (80)
T PF09803_consen   15 VFFPIGMFYYF---NQPEWFEKWVIKRKRELYPPENEEIREELE   55 (80)
T ss_pred             HHHHHHHHHhc---CCcHHHHHHhHHHhcccCCCCCcccHHHHH
Confidence            45777743332   434444555554433333443333333443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00