Citrus Sinensis ID: 022672

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHccEEEEEccccHHHHccccHHHHHccccccEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccEcHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccEccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHEEEEcccccccHHHHHccEEcccHHHHHHHccEEEEcccccHHHcccEcHHHHHcccccEEEEEcccHHHEcHHHHHHHHHcccEEEEEEccccccccccHHHcccccEEEcccccccEHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mavgynnvdvnaankygiavgntpgvlTETTAELAASLSLAAARRIVEADEFMraglydgwlpnlfvgnllkgqtvgvigagrIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLkangeqpvtwkrASSMDEVLREADvislhpvldkttYHLINKERLATMKKEAILVncsrgpviDEVALVEHlkqnpmfrvgldvfedepymkpglsemknAIVVPHIASASKWTREGMATLAALNVLGkikgypiwgnpnqvepflnenaqppaaspsivnskalglpvsrl
Flexible Loop (DISEMBL)
MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFlkangeqpvtwKRASSMDEVLREAdvislhpvldkttYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAqppaaspsivnskalglpvsrl
Low Complexity Region (SEG)
MAVGYNNVDVNAANKYGIAVGNTPGVltettaelaaslslaaaRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL
Disordered region (IsUnstruct)
****YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV******************************
Disordered Region (DISOPRED)
MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL
Disordered Region (DISEMBL)
MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL
Disordered Region (DISPRO)
*AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q9C9W5	386	Glycerate dehydrogenase H	yes	no	1.0	0.761	0.911	1e-152
P13443	382	Glycerate dehydrogenase O	N/A	no	0.979	0.753	0.899	1e-148
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.799	0.709	0.461	1e-48
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.789	0.694	0.426	2e-48
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.802	0.696	0.421	6e-48
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.802	0.704	0.426	2e-47
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.802	0.702	0.416	1e-46
B1L765	332	Glyoxylate reductase OS=K	yes	no	0.795	0.704	0.439	1e-45
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.789	0.696	0.434	2e-44
C5A1V0	334	Glyoxylate reductase OS=T	yes	no	0.789	0.694	0.434	1e-41

>sp|Q9C9W5|HPR1_ARATH Glycerate dehydrogenase HPR, peroxisomal OS=Arabidopsis thaliana GN=HPR PE=1 SV=1

 Score =  536 bits (1382), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 268/294 (91%), Positives = 286/294 (97%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           MAVGYNNVDV AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR GLY+G
Sbjct: 93  MAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRGGLYEG 152

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           WLP+LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYGQ
Sbjct: 153 WLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGQ 212

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           FLKANGEQPVTWKRASSM+EVLREAD+ISLHPVLDKTTYHL+NKERLA MKKEAILVNCS
Sbjct: 213 FLKANGEQPVTWKRASSMEEVLREADLISLHPVLDKTTYHLVNKERLAMMKKEAILVNCS 272

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGPVIDE ALVEHLK+NPMFRVGLDVFE+EP+MKPGL++ KNAIVVPHIASASKWTREGM
Sbjct: 273 RGPVIDEAALVEHLKENPMFRVGLDVFEEEPFMKPGLADTKNAIVVPHIASASKWTREGM 332

Query: 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL 294
           ATLAALNVLG++KGYPIW +PN+V+PFLNENA PP ASPSIVNSKALGLPVS+L
Sbjct: 333 ATLAALNVLGRVKGYPIWHDPNRVDPFLNENASPPNASPSIVNSKALGLPVSKL 386

Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1

 Score =  525 bits (1352), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/288 (89%), Positives = 278/288 (96%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           MAVGYNNVDVNAANKYG+AVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG YDG
Sbjct: 93  MAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGRYDG 152

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+
Sbjct: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGE 212

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           FLKANGE PVTW+RASSMDEVLREADVISLHPVLDKTT+HL+NKE L  MKK+AIL+NCS
Sbjct: 213 FLKANGEAPVTWRRASSMDEVLREADVISLHPVLDKTTFHLVNKESLKAMKKDAILINCS 272

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGPVIDE ALV+HL+ NPMFRVGLDVFEDEPYMKPGL++MKNAI+VPHIASASKWTREGM
Sbjct: 273 RGPVIDEAALVDHLRDNPMFRVGLDVFEDEPYMKPGLADMKNAIIVPHIASASKWTREGM 332

Query: 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALG 288
           ATLAALNVLGKIKGYP+W +PN+VEPFL+EN  PPAASPSIVN+KALG
Sbjct: 333 ATLAALNVLGKIKGYPVWSDPNRVEPFLDENVSPPAASPSIVNAKALG 380

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 119/258 (46%), Positives = 161/258 (62%), Gaps = 23/258 (8%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-- 59
           AVGY+N+D+  A K GI V NTPGVLT+ TA+LA +L LA ARRIVEAD F+R+G +   
Sbjct: 75  AVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKS 134

Query: 60  --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 117
             GW P +F+G  LKG+T+G++G GRIG A A+   +GF M +IYY   +    E+ + A
Sbjct: 135 EVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKR-AKGFGMKIIYYSRTRKPEAEEEIGA 193

Query: 118 -YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 176
            Y  F                 + +L+E+D ISLH  L K TYH+I ++ L  MK  AIL
Sbjct: 194 EYVDF-----------------ETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAIL 236

Query: 177 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 236
           +N SRG V+D  AL++ LK+  +   GLDVFE+EPY    L ++KN ++ PHI SA+   
Sbjct: 237 INTSRGAVVDTNALIKALKEGWIAGAGLDVFEEEPYYNEELFKLKNVVLAPHIGSATHEA 296

Query: 237 REGMATLAALNVLGKIKG 254
           REGMA L A N++   KG
Sbjct: 297 REGMAELVAKNLIAFAKG 314

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/253 (42%), Positives = 156/253 (61%), Gaps = 21/253 (8%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-- 59
           AVGY+N+D+  A K G+ + NTP VLT  TA++A  L LA ARR++EAD+F+R+G +   
Sbjct: 75  AVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKR 134

Query: 60  --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 117
              W P +F+G  + G+T+G++G GRIG A AR   +GF M ++Y    +   +EK + A
Sbjct: 135 GVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARR-AKGFGMRILYNSRTRKPEVEKELGA 193

Query: 118 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 177
             +F+               +DE+L+E+D + L   L K TYH+IN+ERL  MK  AILV
Sbjct: 194 --EFM--------------PLDELLKESDFVVLVVPLTKETYHMINEERLKLMKPTAILV 237

Query: 178 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 237
           N +RG V+D  ALV+ L++  +   GLDVFE+EPY    L  + N ++ PHI SA+   R
Sbjct: 238 NIARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEELFSLDNVVLAPHIGSATYGAR 297

Query: 238 EGMATLAALNVLG 250
           EGMA L A N++ 
Sbjct: 298 EGMAELVARNLIA 310

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  191 bits (485), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 108/256 (42%), Positives = 157/256 (61%), Gaps = 20/256 (7%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG- 60
           +VG++++D+  A K GI V +TPGVLT+  AE    L LA  RRIVEAD+ +R G +D  
Sbjct: 77  SVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILAVTRRIVEADKIIRTGQWDKP 136

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           W P    G  LKG+T+G++G GRIG A A+ +   F + ++YYD+ +   +E  +     
Sbjct: 137 WNPYFLTGPELKGKTIGLVGLGRIGVATAKRL-SSFDVKILYYDIERRWDVETVI----- 190

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
               N E        + +D +L ++D++S+H  L K TYHLIN+ERL  MKK A L+N +
Sbjct: 191 ---PNME-------FTDLDTLLEKSDIVSIHVPLTKETYHLINEERLRKMKKTAYLINTA 240

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTRE 238
           RGPV+D  ALV+ LK+  +    LDVFE EP + P   L++  N ++ PHIASA+   R+
Sbjct: 241 RGPVVDTEALVKALKEGWIAGAALDVFEQEP-LPPNHPLTKFDNVVLAPHIASATIEARQ 299

Query: 239 GMATLAALNVLGKIKG 254
            MA LAA N++  +KG
Sbjct: 300 RMAELAARNLIAVLKG 315

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/260 (42%), Positives = 158/260 (60%), Gaps = 24/260 (9%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG---- 56
           MAVG++N+DV  A + GI V NTPGVLTE TAE   +L LAAARR+VEAD F+R G    
Sbjct: 75  MAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEWWR 134

Query: 57  LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 116
           L  GW P + +G  L+G+T+G++G GRIGS  A +  + F M +IY+   +   +EK + 
Sbjct: 135 LRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIG-KAFGMRIIYHSRSRKREIEKELG 193

Query: 117 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 176
           A                   S++++LRE+D++S+H  L   T HLI +  L  MKK AIL
Sbjct: 194 A----------------EYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMKKTAIL 237

Query: 177 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASK 234
           VN  RG ++D  ALV+ L++  +    LDVFE+EP + P   L+  KN ++ PH ASA++
Sbjct: 238 VNTGRGAIVDTGALVKALREGWIAAAALDVFEEEP-LNPNHPLTAFKNVVLAPHAASATR 296

Query: 235 WTREGMATLAALNVLGKIKG 254
            TR  MA +AA N++   +G
Sbjct: 297 ETRLRMAMMAAENLVAFAQG 316

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/257 (41%), Positives = 152/257 (59%), Gaps = 21/257 (8%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-- 59
           AVGY+N+DV  A + GI V NTP VLT  TA+ A +L LA AR +V+ D+F+R+G +   
Sbjct: 75  AVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRK 134

Query: 60  --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 117
              W P  F+G  L G+T+G++G GRIG A AR   +GF M ++YY   + ++ EK + A
Sbjct: 135 GIAWHPKWFLGYELYGKTIGIVGFGRIGQAIARR-AKGFNMRILYYSRTRKSQAEKELGA 193

Query: 118 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 177
                               ++EVL+E+D + L   L K T ++IN+ERL  MK  AILV
Sbjct: 194 ----------------EYRPLEEVLKESDFVILAVPLTKETMYMINEERLKLMKPTAILV 237

Query: 178 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 237
           N +RG V+D  AL++ LK+  +   GLDVFE+EPY    L  + N ++ PHI SA+   R
Sbjct: 238 NIARGKVVDTKALIKALKEGWIAGAGLDVFEEEPYYNEELFSLDNVVLTPHIGSATFEAR 297

Query: 238 EGMATLAALNVLGKIKG 254
           E MA L A N++   +G
Sbjct: 298 EAMAELVARNLIAFKRG 314

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  183 bits (464), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/257 (43%), Positives = 163/257 (63%), Gaps = 23/257 (8%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-G 60
           AVGY+N+DV  A K GI V NTPGVLTETTA+ A +L +AAARR+VEAD ++R G +   
Sbjct: 75  AVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVA 134

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG- 119
           W P + +G  + G+T+G++G GRIG+A AR   +GF M ++YYD   + R E F    G 
Sbjct: 135 WHPMMMLGYDVYGRTLGIVGMGRIGAAVARR-AKGFGMRILYYD---SIRREDFEKELGV 190

Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
           +++               ++++L E+D +SLH  L + TYH+I +E+L  MK+ AILVN 
Sbjct: 191 EYV--------------PLEKLLEESDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNT 236

Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTR 237
           SRG V+D+ AL + LK+  +   GLDVFE EP + P   L +++N ++ PH ASAS  TR
Sbjct: 237 SRGKVVDQKALYKALKEGWIAGAGLDVFEQEP-IPPDDPLLKLENVVLAPHAASASHETR 295

Query: 238 EGMATLAALNVLGKIKG 254
             MA + A N++   +G
Sbjct: 296 SRMAEMVAENLIAFKRG 312

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/253 (43%), Positives = 154/253 (60%), Gaps = 21/253 (8%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-- 59
           AVGY+N+DV  A + GI V NTP VLT+ TA+ A +L LA ARR++EAD F R+G +   
Sbjct: 75  AVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRR 134

Query: 60  --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 117
              W P  F+G  + G+T+G++G GRIG A AR    GF M ++YY   +    EK + A
Sbjct: 135 GIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARR-ARGFGMRILYYSRSRKPEAEKELGA 193

Query: 118 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 177
             +F               S++++LRE+D + L   L K T ++IN+ERL  MKK AILV
Sbjct: 194 --EF--------------RSLEDLLRESDFVVLAVPLTKETQYMINEERLRLMKKTAILV 237

Query: 178 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 237
           N +RG V+D  AL++ LK+  +   GLDV+E+EPY    L  +KN ++ PHI SA+   R
Sbjct: 238 NIARGKVVDTKALMKALKEGWIAGAGLDVYEEEPYYNEELFSLKNVVLAPHIGSATYGAR 297

Query: 238 EGMATLAALNVLG 250
           EGMA L A N++ 
Sbjct: 298 EGMAELVARNLIA 310

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|C5A1V0|GYAR_THEGJ Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/253 (43%), Positives = 152/253 (60%), Gaps = 21/253 (8%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-- 59
           AVGY+NVDV  A + GI V NTP VLT  TA+ A +L LA ARR++EAD F R+G +   
Sbjct: 75  AVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRK 134

Query: 60  --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 117
              W P +F+G+ + G+T+G+IG GRIG A AR   +GF M ++YY   +    E+ + A
Sbjct: 135 GIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARR-AKGFGMRILYYSRTRKPEAEEELKA 193

Query: 118 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 177
             +F                ++E+L+E+D + L   L K TYH+I +  L  MK  AILV
Sbjct: 194 --EF--------------KPLEELLKESDFVVLAVPLTKETYHMIGERELKLMKPTAILV 237

Query: 178 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 237
           N +RG V+D  AL++ LK+  +   GLDVFE+EPY    L  +KN I+ PHI SA+   R
Sbjct: 238 NIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVILAPHIGSATFGAR 297

Query: 238 EGMATLAALNVLG 250
           EGMA L A N++ 
Sbjct: 298 EGMAELVARNLIA 310

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
90761112	303	NADH-dependent hydroxypyruvate reductase	1.0	0.970	0.911	1e-158
255581842	386	hydroxypyruvate reductase, putative [Ric	1.0	0.761	0.959	1e-157
13873334	386	hydroxypyruvate reductase [Bruguiera gym	1.0	0.761	0.945	1e-156
118489484	386	unknown [Populus trichocarpa x Populus d	1.0	0.761	0.935	1e-155
225428049	386	PREDICTED: glycerate dehydrogenase [Viti	1.0	0.761	0.928	1e-155
224078341	386	predicted protein [Populus trichocarpa]	1.0	0.761	0.931	1e-155
118723307	386	hydroxypyruvate reductase [Solenostemon	1.0	0.761	0.938	1e-155
147805559	386	hypothetical protein VITISV_020147 [Viti	0.976	0.743	0.930	1e-152
388506608	386	unknown [Medicago truncatula]	1.0	0.761	0.904	1e-151
388493492	388	unknown [Lotus japonicus]	0.993	0.752	0.917	1e-151

>gi|90761112|gb|ABD97861.1| NADH-dependent hydroxypyruvate reductase [Pachysandra terminalis]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/294 (91%), Positives = 288/294 (97%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           MAVGYNNVDVNAANKYG+AVGNTPGVLTETTAELAASLS++AARRIVEADEFMRAGLYDG
Sbjct: 10  MAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSVSAARRIVEADEFMRAGLYDG 69

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           WLP+LFVGNLLKGQTVGVIGAGRIGSAYARMM+EGFKMNLIYYDLYQATRLEKFVTAYG+
Sbjct: 70  WLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMIEGFKMNLIYYDLYQATRLEKFVTAYGE 129

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           FLKANGE PVTWKRASSM+EVLREADVISLHP+LDKTTYHLINKERL+ MKKEAILVNCS
Sbjct: 130 FLKANGEPPVTWKRASSMEEVLREADVISLHPILDKTTYHLINKERLSMMKKEAILVNCS 189

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGPV+DEVALVEHLK+NPMFRVGLDVFEDEPYMKPGL++MKNAIVVPHIASASKWTREGM
Sbjct: 190 RGPVVDEVALVEHLKENPMFRVGLDVFEDEPYMKPGLADMKNAIVVPHIASASKWTREGM 249

Query: 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL 294
           ATLAALNVLGKIKGYP+W +PN+VEPFLN+N+ PPAASPSIVN+KALGL  S+L
Sbjct: 250 ATLAALNVLGKIKGYPVWSDPNRVEPFLNKNSPPPAASPSIVNAKALGLTASKL 303

Source: Pachysandra terminalis

Species: Pachysandra terminalis

Genus: Pachysandra

Family: Buxaceae

Order: Buxales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581842|ref|XP_002531721.1| hydroxypyruvate reductase, putative [Ricinus communis] gi|223528624|gb|EEF30641.1| hydroxypyruvate reductase, putative [Ricinus communis]

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 282/294 (95%), Positives = 290/294 (98%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           MAVGYNNVDVNAANKYG+AVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG
Sbjct: 93  MAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           WLP+LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY+DLYQATRLEKFVTAYG 
Sbjct: 153 WLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQATRLEKFVTAYGA 212

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           FL+ANGEQPVTWKRASSMDEVLR ADVISLHPVLDKTTYHLINKE LATMKKEAILVNCS
Sbjct: 213 FLQANGEQPVTWKRASSMDEVLRVADVISLHPVLDKTTYHLINKESLATMKKEAILVNCS 272

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL+EMKNAIVVPHIASASKWTREGM
Sbjct: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLAEMKNAIVVPHIASASKWTREGM 332

Query: 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL 294
           ATLAALNVLGKIKGYP+WGNPNQVEPFLNENA PPAASPSIVN+KALGLPVS+L
Sbjct: 333 ATLAALNVLGKIKGYPVWGNPNQVEPFLNENAPPPAASPSIVNAKALGLPVSKL 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13873334|dbj|BAB44155.1| hydroxypyruvate reductase [Bruguiera gymnorhiza]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 278/294 (94%), Positives = 291/294 (98%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           MAVGYNNVDVNAANKYG+AVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG
Sbjct: 93  MAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ
Sbjct: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           FLKANGEQPVTWKRA++MDEVLREADVISLHPVLDKTTYHLINKE LA+MKKEA+LVNCS
Sbjct: 213 FLKANGEQPVTWKRAATMDEVLREADVISLHPVLDKTTYHLINKESLASMKKEAVLVNCS 272

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGPVIDEVALVEHL++NPMFRVGLDVFEDEPYMKPGL++MKNAIVVPHIASASKWTREGM
Sbjct: 273 RGPVIDEVALVEHLRRNPMFRVGLDVFEDEPYMKPGLADMKNAIVVPHIASASKWTREGM 332

Query: 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL 294
           ATLAALNVLGKIKGYP+WG+PN+VEPFLNENA PPAA PSIVNSKALGLPVS+L
Sbjct: 333 ATLAALNVLGKIKGYPVWGDPNRVEPFLNENAPPPAACPSIVNSKALGLPVSKL 386

Source: Bruguiera gymnorhiza

Species: Bruguiera gymnorhiza

Genus: Bruguiera

Family: Rhizophoraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489484|gb|ABK96544.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/294 (93%), Positives = 291/294 (98%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           MAVGYNNVDVNAANK+G+AVGNTPGVLTETTAELAASLSLAAARRIVEAD+FMRAGLYDG
Sbjct: 93  MAVGYNNVDVNAANKHGVAVGNTPGVLTETTAELAASLSLAAARRIVEADQFMRAGLYDG 152

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           WLP+LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+
Sbjct: 153 WLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGE 212

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           FLKANGEQPVTWKRA+SMDEVLREADVISLHP+LDKTTYHLINKE LATMKKEAILVNCS
Sbjct: 213 FLKANGEQPVTWKRAASMDEVLREADVISLHPILDKTTYHLINKESLATMKKEAILVNCS 272

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGPV+DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL++MKNA+VVPHIASASKWTREGM
Sbjct: 273 RGPVVDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTREGM 332

Query: 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL 294
           ATLAALNVLGKIKGYP+WG+PNQV PFLNENA PPAASPSIVN+KALGLPVS+L
Sbjct: 333 ATLAALNVLGKIKGYPVWGDPNQVAPFLNENAPPPAASPSIVNAKALGLPVSKL 386

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428049|ref|XP_002279281.1| PREDICTED: glycerate dehydrogenase [Vitis vinifera] gi|297744600|emb|CBI37862.3| unnamed protein product [Vitis vinifera]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/294 (92%), Positives = 290/294 (98%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           MAVGYNNVDVNAANKYG+AVGNTPGVLTETTAELAASLS+AAARRIVEADEFMRAGLYDG
Sbjct: 93  MAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSMAAARRIVEADEFMRAGLYDG 152

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           WLP+LFVGNLL+GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ
Sbjct: 153 WLPHLFVGNLLRGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           FLKA+GEQPVTWKRA+SMDEVLREAD+ISLHPVLDKTTYHL+NKERL+ MKKEAIL+NCS
Sbjct: 213 FLKASGEQPVTWKRAASMDEVLREADLISLHPVLDKTTYHLVNKERLSMMKKEAILINCS 272

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGPVIDEVALV HLK+NPMFRVGLDVFEDEPYMKPGL+EMKNAIVVPHIASASKWTREGM
Sbjct: 273 RGPVIDEVALVAHLKENPMFRVGLDVFEDEPYMKPGLAEMKNAIVVPHIASASKWTREGM 332

Query: 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL 294
           ATLAALNVLGKIKGYPIW +PN+VEPFLNEN+ PPAASPSIVN+KALGLPVS+L
Sbjct: 333 ATLAALNVLGKIKGYPIWHDPNKVEPFLNENSLPPAASPSIVNAKALGLPVSKL 386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078341|ref|XP_002305524.1| predicted protein [Populus trichocarpa] gi|222848488|gb|EEE86035.1| predicted protein [Populus trichocarpa]

 Score =  551 bits (1421), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/294 (93%), Positives = 291/294 (98%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           MAVGYNNVDVNAANK+G+AVGNTPGVLTETTAELAASLSLAAARRIVEAD+FMRAGLYDG
Sbjct: 93  MAVGYNNVDVNAANKHGVAVGNTPGVLTETTAELAASLSLAAARRIVEADQFMRAGLYDG 152

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           WLP+LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+
Sbjct: 153 WLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGE 212

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           FLKANGEQPVTWKRA+SMDEVLREADVISLHP+LDKTTYHLINKE LATMKKEAILVNCS
Sbjct: 213 FLKANGEQPVTWKRAASMDEVLREADVISLHPILDKTTYHLINKESLATMKKEAILVNCS 272

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGPV+DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL++MKNA+VVPHIASASKWTREGM
Sbjct: 273 RGPVVDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTREGM 332

Query: 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL 294
           ATLAALNVLGKIKGYP+WG+PN+V PFLNENA PPAASPSIVN+KALGLPVS+L
Sbjct: 333 ATLAALNVLGKIKGYPVWGDPNRVAPFLNENAPPPAASPSIVNAKALGLPVSKL 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118723307|gb|ABL10359.1| hydroxypyruvate reductase [Solenostemon scutellarioides]

 Score =  551 bits (1421), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/294 (93%), Positives = 288/294 (97%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           MAVGYNNVDV+AANK+G+AVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG
Sbjct: 93  MAVGYNNVDVDAANKHGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           WLP+LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQ
Sbjct: 153 WLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQ 212

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           FL+ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL+NKERLA MKKEAILVNCS
Sbjct: 213 FLQANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLVNKERLAKMKKEAILVNCS 272

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL +MKNAI+VPHIASASKWTREGM
Sbjct: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLEKMKNAIIVPHIASASKWTREGM 332

Query: 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL 294
           ATLAALNVLGKIKGYPIWG+PN V PFLNEN+ PPAA PSIVNSKALGLPVS+L
Sbjct: 333 ATLAALNVLGKIKGYPIWGDPNNVAPFLNENSPPPAACPSIVNSKALGLPVSKL 386

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805559|emb|CAN65023.1| hypothetical protein VITISV_020147 [Vitis vinifera]

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 267/287 (93%), Positives = 283/287 (98%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           MAVGYNNVDVNAANKYG+AVGNTPGVLTETTAELAASLS+AAARRIVEADEFMRAGLYDG
Sbjct: 93  MAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSMAAARRIVEADEFMRAGLYDG 152

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           WLP+LFVGNLL+GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ
Sbjct: 153 WLPHLFVGNLLRGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           FLKA+GEQPVTWKRA+SMDEVLREAD+ISLHPVLDKTTYHL+NKERL+ MKKEAIL+NCS
Sbjct: 213 FLKASGEQPVTWKRAASMDEVLREADLISLHPVLDKTTYHLVNKERLSMMKKEAILINCS 272

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGPVIDEVALV HLK+NPMFRVGLDVFEDEPYMKPGL+EMKNAIVVPHIASASKWTREGM
Sbjct: 273 RGPVIDEVALVAHLKENPMFRVGLDVFEDEPYMKPGLAEMKNAIVVPHIASASKWTREGM 332

Query: 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKAL 287
           ATLAALNVLGKIKGYPIW +PN+VEPFLNEN+ PPAASPSIVN+KAL
Sbjct: 333 ATLAALNVLGKIKGYPIWHDPNKVEPFLNENSLPPAASPSIVNAKAL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506608|gb|AFK41370.1| unknown [Medicago truncatula]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/294 (90%), Positives = 287/294 (97%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           MAVGYNNVDVNAANK+G+AVGNTPGVLTETTAELAASL+LAAARRIVEADEFMRAGLYDG
Sbjct: 93  MAVGYNNVDVNAANKHGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRAGLYDG 152

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           WLP+LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG 
Sbjct: 153 WLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGA 212

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           FLKANGE PVTWKRA+SMDEVL+EAD+ISLHP+LDKTTYHL+NKERLA MKKEAIL+NCS
Sbjct: 213 FLKANGETPVTWKRAASMDEVLQEADIISLHPILDKTTYHLVNKERLAKMKKEAILINCS 272

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGPVIDEVALVEHLK+NPMFRVGLDVFEDEPYMKPGL+E+KNA+VVPHIASASKWTREGM
Sbjct: 273 RGPVIDEVALVEHLKENPMFRVGLDVFEDEPYMKPGLAELKNAVVVPHIASASKWTREGM 332

Query: 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL 294
           ATLAALNVLGKIKGYP+W + N+VEPFLNENAQPPAA PSIVN+KAL LPVS+L
Sbjct: 333 ATLAALNVLGKIKGYPVWFDANRVEPFLNENAQPPAACPSIVNAKALSLPVSKL 386

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493492|gb|AFK34812.1| unknown [Lotus japonicus]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 268/292 (91%), Positives = 285/292 (97%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           MAVGYNNVDVNAANKYG+AVGNTPGVLTETTAELAASL+LAAARRIVEADEFMRAGLYDG
Sbjct: 93  MAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRAGLYDG 152

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           WLP+LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ+TRLEKFVTAY  
Sbjct: 153 WLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYAA 212

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           FLKANGE PVTWKRASSMDEVL+EAD+ISLHP+LDKTTYHL+NKERLA MKKEAILVNCS
Sbjct: 213 FLKANGETPVTWKRASSMDEVLQEADIISLHPILDKTTYHLVNKERLAKMKKEAILVNCS 272

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGPVIDE ALVEHL+QNPMFRVGLDVFE+EPYMKPGL+E+KNAIVVPHIASASKWTREGM
Sbjct: 273 RGPVIDEAALVEHLRQNPMFRVGLDVFEEEPYMKPGLAELKNAIVVPHIASASKWTREGM 332

Query: 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVS 292
           ATLAALNVLGKIKGYP+W + N+VEPFL+ENAQPPAASPSIVN+KALGLPVS
Sbjct: 333 ATLAALNVLGKIKGYPVWFDANKVEPFLDENAQPPAASPSIVNAKALGLPVS 384

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TIGR_CMR|BA_1434	323	BA_1434 "D-isomer specific 2-h	0.401	0.365	0.389	5.7e-38
UNIPROTKB|Q48MK5	324	PSPPH_1099 "D-isomer specific	0.809	0.734	0.354	3.6e-34
UNIPROTKB|Q4KI01	324	ghrB2 "Glyoxylate/hydroxypyruv	0.809	0.734	0.358	9.5e-34
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.778	0.698	0.349	3.2e-33
TIGR_CMR|CHY_2698	525	CHY_2698 "D-3-phosphoglycerate	0.496	0.278	0.36	4.6e-33
TIGR_CMR|SPO_1570	330	SPO_1570 "D-isomer specific 2-	0.809	0.721	0.321	2.6e-31
UNIPROTKB|P37666	324	ghrB "GhrB" [Escherichia coli	0.806	0.731	0.359	3e-30
UNIPROTKB|Q5TM04	328	2-KGalARE "Glyoxylate/hydroxyp	0.836	0.75	0.347	6.2e-30
TIGR_CMR|BA_5135	330	BA_5135 "D-isomer specific 2-h	0.806	0.718	0.312	7.9e-30
TIGR_CMR|SPO_0632	328	SPO_0632 "D-isomer specific 2-	0.833	0.746	0.330	2.1e-29

TIGR_CMR|BA_1434 BA_1434 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 236 (88.1 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
 Identities = 46/118 (38%), Positives = 75/118 (63%)

Query:   137 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 196
             +++E+L+ AD I+++   +   +H+I++E+   MKK A +VN SRGP++ E AL   LK 
Sbjct:   191 TLEELLQTADFITINCAYNPKLHHMIDEEQFKMMKKTAYIVNASRGPIMHEAALAHALKT 250

Query:   197 NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 254
             N +    LDVFE EP +   L  +KN ++ PH+ +A+  TR+ MA +A  N+L  +KG
Sbjct:   251 NEIEGAALDVFEFEPKITEELKGLKNVVLAPHVGNATFETRDAMAEMAVRNILAVLKG 308

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q48MK5 PSPPH_1099 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 90/254 (35%), Positives = 137/254 (53%)

Query:     1 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
             ++VGY+N DV+  ++ GI + NTP V                 RR+ E D + +AG +  
Sbjct:    73 ISVGYDNYDVDYLSERGILLTNTPDVLTESTADLGFSLIMSSARRVAELDAYTKAGQWTR 132

Query:    61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
              +     G  + G+T+G++G G IG+A AR    GF M ++Y    + T LE+ + A  Q
Sbjct:   133 SIEPPHFGTDVHGKTLGIVGMGNIGAAIARRGRLGFNMPILYSGNSRKTELEQELGA--Q 190

Query:   121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
             F               S+D++L EAD + L   L + T HLI +  L+ MK  AIL+N +
Sbjct:   191 F--------------RSLDQLLAEADFVCLVVPLSEKTKHLIGRRELSLMKPGAILINIA 236

Query:   181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
             RGP++DE AL+E L+   +   GLDV+E EP  +  L ++KNA+ +PHI SA+  TR+ M
Sbjct:   237 RGPIVDEPALIEALQNGTIRGAGLDVYEKEPLKESPLFQLKNAVTLPHIGSATTETRQAM 296

Query:   241 ATLAALNVLGKIKG 254
             A  A  N+   + G
Sbjct:   297 ADRAYHNLRNALLG 310

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q4KI01 ghrB2 "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 91/254 (35%), Positives = 136/254 (53%)

Query:     1 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
             ++VGY+N D+   N+ G+ + NTP V                 RR+ E D + +AG +  
Sbjct:    73 ISVGYDNYDLAYFNERGLMLTNTPDVLTESTADLAFALLMSSARRVAELDAWTKAGQWQA 132

Query:    61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
              +     G  + G+T+G++G G IG+A AR    GF M ++Y    +   LE+ + A  Q
Sbjct:   133 SVGPALFGCDVHGKTLGIVGMGNIGAAIARRGRLGFGMPILYSGNSRKAALEQELGA--Q 190

Query:   121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
             F               S++++L EAD + L   L + T HLI+   LA MK  AILVN S
Sbjct:   191 F--------------RSLEQLLAEADFVCLVVPLSEKTKHLISHRELALMKPSAILVNIS 236

Query:   181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
             RGPV+DE AL+E L++  +   GLDV+E EP  +  L ++KNA+ +PHI SA+  TR+ M
Sbjct:   237 RGPVVDEPALIEALQKGQIRGAGLDVYEKEPLAESPLFQLKNAVTLPHIGSATHETRDAM 296

Query:   241 ATLAALNVLGKIKG 254
             A  A  N+   + G
Sbjct:   297 AARAMSNLRSALLG 310

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=ISS

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0019521 "D-gluconate metabolic process" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 86/246 (34%), Positives = 128/246 (52%)

Query:     4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
             G +N+DV +A + GI V NTPGV                 RR+ E  + M AG +DGW P
Sbjct:    81 GVDNIDVASAVQRGITVTNTPGVLTDDTADVAMALILAVPRRMHEGVQIMEAGKFDGWTP 140

Query:    64 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFL 122
                +G  L G+ +G+IG GRIG A AR     F M + Y++    ++R+E+ + A     
Sbjct:   141 TWMMGRRLSGKRLGIIGMGRIGQAVARR-ARAFGMQIHYHNRKPVSSRIEESLEA----- 194

Query:   123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                      W    S+D++L   D++S++      T+HLIN  RL  MK EA ++N +RG
Sbjct:   195 -------TYW---DSLDQMLARMDIVSINCPHTPATFHLINARRLGLMKPEAYIINTARG 244

Query:   183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 242
              VIDE AL   ++   +   GLDVFE EP + P L  + N +++PH+ SA+   R  M  
Sbjct:   245 EVIDEAALARAIRAGKIAGAGLDVFEREPAVNPELIGLPNVLLLPHMGSATIEGRTEMGE 304

Query:   243 LAALNV 248
                +N+
Sbjct:   305 KVIINI 310

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 239 (89.2 bits), Expect = 4.6e-33, Sum P(2) = 4.6e-33
 Identities = 54/150 (36%), Positives = 85/150 (56%)

Query:   108 ATRLEKFVT---AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 164
             A R++ F T    Y  F+     Q +      S++E+L+ +D++++H  L+  T +LIN+
Sbjct:   155 AKRVKAFETRVIGYDPFISEERAQ-MLGITLMSLEELLQNSDIVTMHLPLNNETRNLINR 213

Query:   165 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI 224
             ERL  MKK A ++NC+RG +IDE AL E LK   +    LDVF  EP  +  L E+ N I
Sbjct:   214 ERLKLMKKSAFIINCARGGIIDEEALYEALKAGEIAGAALDVFSKEPLTESPLFELPNVI 273

Query:   225 VVPHIASASKWTREGMATLAALNVLGKIKG 254
             V PH+ +++K  +  +A   A  +   +KG
Sbjct:   274 VTPHLGASTKEAQINVAIDVAREIASVLKG 303

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

TIGR_CMR|SPO_1570 SPO_1570 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 81/252 (32%), Positives = 128/252 (50%)

Query:     3 VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
             VGY+++D +A   +GI V NTP V                 RR  E +  +RAG + GW 
Sbjct:    85 VGYSHIDSDAVRAHGITVSNTPDVLSECTADIAMTLMLMVARRAGEGERELRAGQWTGWR 144

Query:    63 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
             P   VG+ + G+ +G++G GRIG A A+    GF M ++  +  ++   +  +  YG   
Sbjct:   145 PTHLVGSKVSGKVLGIVGFGRIGQAMAQRAHHGFGMKILVQN--RSAVPQDVLDRYGA-- 200

Query:   123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                        +  ++D +L + D +SLH        HLIN  RL  MK +A L+N +RG
Sbjct:   201 ----------TQVETLDAMLPQCDFVSLHCPGGAANRHLINSRRLDLMKPDAFLINTARG 250

Query:   183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 242
              V+DE AL + L  + +    LDVF+ EP + P L +  N +++PH+ SA++ TRE M  
Sbjct:   251 EVVDEHALAQALMFDCIGGAALDVFDGEPRIAPVLLDCDNLVMLPHLGSATRETREAMGM 310

Query:   243 LAALNVLGKIKG 254
                 N++   +G
Sbjct:   311 RVLDNLVDYFEG 322

GO:0008152 "metabolic process" evidence=ISS

GO:0050578 "(R)-2-hydroxyacid dehydrogenase activity" evidence=ISS

UNIPROTKB|P37666 ghrB "GhrB" [Escherichia coli K-12 (taxid:83333)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 92/256 (35%), Positives = 131/256 (51%)

Query:     1 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
             ++VGY+N DV+A     I + +TP V                 RR+VE  E ++AG +  
Sbjct:    73 ISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTA 132

Query:    61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
              +   + G  +  +T+G++G GRIG A A+    GF M +    LY A R  K   A  +
Sbjct:   133 SIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPI----LYNARRHHK--EAEER 186

Query:   121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
             F   N        R   +D +L+E+D + L   L   T+HL   E+ A MK  AI +N  
Sbjct:   187 F---NA-------RYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAG 236

Query:   181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIASASKWTRE 238
             RGPV+DE AL+  L++  +   GLDVFE EP     P LS M N + VPHI SA+  TR 
Sbjct:   237 RGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLS-MANVVAVPHIGSATHETRY 295

Query:   239 GMATLAALNVLGKIKG 254
             GMA  A  N++  ++G
Sbjct:   296 GMAACAVDNLIDALQG 311

GO:0051287 "NAD binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046181 "ketogluconate catabolic process" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019521 "D-gluconate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=IEA;IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5TM04 2-KGalARE "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 93/268 (34%), Positives = 132/268 (49%)

Query:     1 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
             ++VG +N D++   +  I + NTP V                 RR+VE    +RAG +  
Sbjct:    73 VSVGVDNYDIDYLTQRRILLSNTPDVLTETTADTGFALILATARRVVELANLVRAGQWQR 132

Query:    61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
              +     G  + G+T+G+IG GRIG A A+    GF M LIY+       +E+   A  Q
Sbjct:   133 NIGPAHFGTDVHGKTLGIIGMGRIGEALAQRGHFGFGMPLIYHSTRPKPAVEQRFNA--Q 190

Query:   121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
             +               S++++L EAD I L   L + T  LI     A M+ E+I +N S
Sbjct:   191 Y--------------RSLEQLLEEADFICLTLPLTERTQGLIGAREFALMRPESIFINIS 236

Query:   181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTRE 238
             RG V+DE AL+E L+Q  +   GLDVFE EP  +  P L ++ N +  PHI SA+  TRE
Sbjct:   237 RGKVVDEAALIEALQQRRIRGAGLDVFEREPLDHDSP-LLQLPNVVATPHIGSATHETRE 295

Query:   239 GMATLAALNVLGKIKGYPIWGNPNQVEP 266
              MA  A  N+L  + G      PN V P
Sbjct:   296 AMARCAVDNLLAALAGQR---PPNLVNP 320

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

GO:0046487 "glyoxylate metabolic process" evidence=ISS

TIGR_CMR|BA_5135 BA_5135 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 80/256 (31%), Positives = 134/256 (52%)

Query:     1 MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
             ++VGY+N D+ A  K+ +   NTP V                 RR+ E D +++ G ++ 
Sbjct:    83 ISVGYDNFDLQAMAKHNVIGTNTPYVLDDTVADLVFALMLSAGRRVCELDSYVKNGEWNA 142

Query:    61 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
              +     G  +   T+G+IG GRIG A A+    GF M+++YY+  +    E+   A   
Sbjct:   143 EIGKEHFGLDVHHSTIGIIGMGRIGEAVAKRAKFGFDMDVLYYNRRRKEEAEQKFDA--- 199

Query:   121 FLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
                       T+     +  +L+++D ++ L P+ D+T YHLI ++  + MK+ AI +N 
Sbjct:   200 ----------TY---CDLQTLLKQSDFIVLLTPLTDET-YHLIGEKEFSFMKETAIFINA 245

Query:   180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTRE 238
             SRG  +DE AL++ L +  +F  G+D F  EP  K   L  ++N + +PHI SA+  TR+
Sbjct:   246 SRGKTVDEEALIDALTEKKIFAAGIDTFTQEPIQKDNPLLSLQNVVTLPHIGSATLKTRQ 305

Query:   239 GMATLAALNVLGKIKG 254
              MA  AA N++  ++G
Sbjct:   306 QMAMTAAENLVAGLQG 321

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_0632 SPO_0632 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 87/263 (33%), Positives = 129/263 (49%)

Query:     4 GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
             G +++DV  A + GI V NTPGV                 RRI E    M+   + GW P
Sbjct:    81 GVDHIDVATARQRGILVSNTPGVLTDDTADMTMALILAVTRRIPEGLAVMQKNEWTGWAP 140

Query:    64 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
                +G  + G+ +G++G GRIG A AR     F M + Y++     RL   V      L+
Sbjct:   141 TALLGGRVGGRRLGILGMGRIGQAVARR-ASAFGMQIHYHN---RRRLRPEVE---DALE 193

Query:   124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
             A      TW    S+D+++   DVIS++     +T+HL+N  RL  MK   ++VN SRG 
Sbjct:   194 A------TWW--DSLDQMIARMDVISVNCPSTPSTFHLMNARRLKLMKPTGVIVNTSRGE 245

Query:   184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATL 243
             VIDE AL   ++   +   GLDV+E    + P L E+ N +++PH+ SA+   R  M   
Sbjct:   246 VIDENALTRMIRTGEIAGAGLDVYEHGTQVNPRLRELPNVVLLPHMGSATLEGRIEMGEK 305

Query:   244 AALNVLGKIKGYPIWGNPNQVEP 266
               +N+     G+     P+QV P
Sbjct:   306 VIINIKTFADGHR---PPDQVVP 325

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9W5	HPR1_ARATH	1, ., 1, ., 1, ., 2, 9	0.9115	1.0	0.7616	yes	no
P13443	DHGY_CUCSA	1, ., 1, ., 1, ., 2, 9	0.8993	0.9795	0.7539	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.976
4th Layer	1.1.1.29	0.991

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	0.0
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	1e-115
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	1e-81
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	4e-78
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	2e-77
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	2e-76
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	1e-72
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	2e-72
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	5e-69
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	3e-65
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	2e-63
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	3e-61
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	2e-60
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	5e-60
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	4e-57
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	8e-57
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	2e-56
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	2e-56
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	3e-55
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	2e-54
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	3e-54
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	3e-54
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	9e-53
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	1e-52
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	2e-51
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	2e-51
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	3e-50
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	2e-49
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	2e-47
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	8e-47
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	1e-44
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	2e-44
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	1e-40
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	3e-40
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	5e-39
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	2e-37
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	1e-34
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	2e-32
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	2e-32
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	6e-32
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	8e-31
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	2e-30
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	3e-28
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	2e-27
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	2e-26
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	2e-26
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	3e-26
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	2e-25
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	2e-24
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	1e-23
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	4e-22
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	5e-18
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	6e-17
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	3e-15
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	4e-15
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	7e-14
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	1e-13
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	1e-12
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	1e-11
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	2e-07
cd01620	317	cd01620, Ala_dh_like, Alanine dehydrogenase and re	1e-05

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  614 bits (1584), Expect = 0.0
 Identities = 275/294 (93%), Positives = 289/294 (98%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           MAVGYNNVDV AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY+G
Sbjct: 93  MAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEG 152

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           WLP+LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQ
Sbjct: 153 WLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQ 212

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           FLKANGEQPVTWKRASSM+EVLREADVISLHPVLDKTTYHLINKERLA MKKEA+LVN S
Sbjct: 213 FLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNAS 272

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGPVIDEVALVEHLK NPMFRVGLDVFEDEPYMKPGL++MKNA+VVPHIASASKWTREGM
Sbjct: 273 RGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTREGM 332

Query: 241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL 294
           ATLAALNVLGK+KGYP+WG+PN+VEPFLNENA PPAASPSIVN+KALGLPVS+L
Sbjct: 333 ATLAALNVLGKLKGYPVWGDPNRVEPFLNENAPPPAASPSIVNAKALGLPVSKL 386

Length = 386

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  335 bits (861), Expect = e-115
 Identities = 118/255 (46%), Positives = 156/255 (61%), Gaps = 18/255 (7%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
            +VGY+++DV+AA   GI V NTP VLT+ TA+LA +L LAAARR+VE D F+RAG + G
Sbjct: 72  YSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAARRVVEGDRFVRAGEWKG 131

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           W P L +G  L G+T+G++G GRIG A AR    GF M ++Y++  +    E+ + A   
Sbjct: 132 WSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAK-GFGMKILYHNRSRKPEAEEELGAR-- 188

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                           S+DE+L E+D +SLH  L   T HLIN ERLA MK  AIL+N +
Sbjct: 189 --------------YVSLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTA 234

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG 239
           RG V+DE ALVE LK   +   GLDVFE EP      L  + N +++PHI SA+  TR  
Sbjct: 235 RGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGSATVETRTA 294

Query: 240 MATLAALNVLGKIKG 254
           MA LAA N+L  + G
Sbjct: 295 MAELAADNLLAVLAG 309

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  248 bits (636), Expect = 1e-81
 Identities = 103/253 (40%), Positives = 147/253 (58%), Gaps = 16/253 (6%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 61
             G++N+DV+ A + GI V NTP V TE TAEL   L LA ARRI E D  MR G + GW
Sbjct: 73  GAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRLMRRGGFLGW 132

Query: 62  LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
            P  F+G+ L G+T+G+IG GRIG A AR   + F M ++YY+ ++ +   +     G  
Sbjct: 133 APLFFLGHELAGKTLGIIGMGRIGQAVARR-AKAFGMKILYYNRHRLSEETE--KELG-- 187

Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
                    T+     +DE+L+E+D +SLH      T+HLI+      MK  A L+N +R
Sbjct: 188 --------ATYV---DLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAAR 236

Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 241
           GP++DE ALV+ LK   +    LDVFE EP + P L ++ N I+ PHI +A+   R+ MA
Sbjct: 237 GPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPELKKLDNVILTPHIGNATVEARDAMA 296

Query: 242 TLAALNVLGKIKG 254
             AA N++  ++G
Sbjct: 297 KEAADNIISFLEG 309

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  239 bits (613), Expect = 4e-78
 Identities = 108/259 (41%), Positives = 146/259 (56%), Gaps = 22/259 (8%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
            + GY+NVD+ AA + GI V N PG  TE  AE A +L LA ARRI E D  +R G +  
Sbjct: 73  RSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSL 132

Query: 61  W-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
              P+  +G  L+G+T+G+IG GRIG A AR + +GF M ++YYD       EK      
Sbjct: 133 SGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRL-KGFGMKVLYYDRSPNPEAEK--ELGA 189

Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
           +++               +DE+L E+D+ISLH  L   T HLIN E LA MK  AILVN 
Sbjct: 190 RYV--------------DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNT 235

Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----GLSEMKNAIVVPHIASASKW 235
           +RG ++DE AL++ LK   +   GLDVFE+EP +       L    N ++ PHIASA++ 
Sbjct: 236 ARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEE 295

Query: 236 TREGMATLAALNVLGKIKG 254
            R+ MA LA  N+     G
Sbjct: 296 ARKAMAELALENLEAFFDG 314

Length = 324

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  237 bits (608), Expect = 2e-77
 Identities = 109/248 (43%), Positives = 144/248 (58%), Gaps = 23/248 (9%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           VGY+N+D+ AA K GI V NTPG  + + AEL   L LA AR+I +AD  +RAG   GW 
Sbjct: 77  VGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQADREVRAG---GWD 133

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
               VG  L G+T+G+IG GRIG A AR +  GF M ++ YD Y             +F 
Sbjct: 134 R--PVGTELYGKTLGIIGLGRIGKAVARRLS-GFGMKVLAYDPYPDE----------EFA 180

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
           K +G + V      S++E+L+E+D ISLH  L   T HLIN   LA MK  AIL+N +RG
Sbjct: 181 KEHGVEFV------SLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTARG 234

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTREGMA 241
            ++DE AL E LK   +    LDVFE+EP      L E+ N I+ PHI +++K     M 
Sbjct: 235 GLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAVLRMG 294

Query: 242 TLAALNVL 249
           T+AA NV+
Sbjct: 295 TMAAQNVI 302

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  235 bits (602), Expect = 2e-76
 Identities = 119/258 (46%), Positives = 159/258 (61%), Gaps = 21/258 (8%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD- 59
            AVGY+N+DV  A + GI V NTPGVLTE TA+ A +L LA ARR+VEAD F+R+G +  
Sbjct: 74  YAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKR 133

Query: 60  ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 116
               W P +F+G  + G+T+G+IG GRIG A AR   +GF M ++YY   +    EK + 
Sbjct: 134 RGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR-AKGFGMRILYYSRTRKPEAEKELG 192

Query: 117 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 176
           A                    ++E+LRE+D +SLH  L K TYH+IN+ERL  MK  AIL
Sbjct: 193 A----------------EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAIL 236

Query: 177 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 236
           VN +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L  +KN ++ PHI SA+   
Sbjct: 237 VNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEA 296

Query: 237 REGMATLAALNVLGKIKG 254
           REGMA L A N++   +G
Sbjct: 297 REGMAELVAENLIAFKRG 314

Length = 333

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  225 bits (576), Expect = 1e-72
 Identities = 99/250 (39%), Positives = 130/250 (52%), Gaps = 25/250 (10%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           VG +N+DV AA   GI V N PG  T + AE   +L LA AR I +AD  +RAG    W 
Sbjct: 71  VGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIPQADASLRAG---KWD 127

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY-QATRLEKFVTAYGQF 121
              F+G  L+G+T+G++G GRIG   AR     F M ++ YD Y  A R           
Sbjct: 128 RKKFMGVELRGKTLGIVGLGRIGREVARRAR-AFGMKVLAYDPYISAERAAAGGV----- 181

Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
                          S+DE+L EAD ISLH  L   T  LIN E LA MK  AIL+N +R
Sbjct: 182 ------------ELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILINTAR 229

Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREG 239
           G ++DE AL + LK   +    LDVFE EP       L  + N I+ PH+ ++++  +E 
Sbjct: 230 GGIVDEAALADALKSGKIAGAALDVFEQEP-PPADSPLLGLPNVILTPHLGASTEEAQER 288

Query: 240 MATLAALNVL 249
           +A  AA  VL
Sbjct: 289 VAVDAAEQVL 298

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  224 bits (574), Expect = 2e-72
 Identities = 98/250 (39%), Positives = 133/250 (53%), Gaps = 20/250 (8%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
              G +N+D++AA K GI V N PG   E  AE A  L LA  RR+  AD  +R G    
Sbjct: 70  AGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRGWGWL 129

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           W    F G  L+G+TVG++G GRIG   A+ + + F M ++YYD  +    E+       
Sbjct: 130 WAG--FPGYELEGKTVGIVGLGRIGQRVAKRL-QAFGMKVLYYDRTRKPEPEED------ 180

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                        R  S+DE+L ++DV+ LH  L   T HLIN+E LA MK  A+LVN +
Sbjct: 181 ----------LGFRVVSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTA 230

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTREG 239
           RG ++DE AL+  LK   +    LDVFE EP      L E+ N I+ PHIA  ++  RE 
Sbjct: 231 RGGLVDEDALLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARER 290

Query: 240 MATLAALNVL 249
           MA +A  N+ 
Sbjct: 291 MAEIAVENLE 300

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  216 bits (553), Expect = 5e-69
 Identities = 101/266 (37%), Positives = 139/266 (52%), Gaps = 22/266 (8%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
            G +N+D+ AA K GI V N PG    + AEL  +L LA ARRI +AD   R G    W 
Sbjct: 75  AGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRG---EWD 131

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
              F G  L G+TVG+IG GRIG A A+ + + F M +I YD Y            G   
Sbjct: 132 RKAFRGTELAGKTVGIIGLGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAGVDGVVG--- 187

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                         S+DE+L EAD+++LH  L   T  LIN E LA MK  AIL+N +RG
Sbjct: 188 ------------VDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARG 235

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGM 240
            V+DE AL+  L    +    LDVFE+EP +     L ++ N I+ PHI  ++   +E +
Sbjct: 236 GVVDEDALLAALDSGKIAGAALDVFEEEP-LPADSPLWDLPNVILTPHIGGSTDEAQERV 294

Query: 241 ATLAALNVLGKIKGYPIWGNPNQVEP 266
           A + A N++  + G P+  N  +V+ 
Sbjct: 295 AEIVAENIVRYLAGGPVVNNAPEVDL 320

Length = 324

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  206 bits (526), Expect = 3e-65
 Identities = 92/247 (37%), Positives = 130/247 (52%), Gaps = 20/247 (8%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           VG +N+DV  A K GI V NTPG  + + AEL   L L+ AR I  A+  M+ G    W 
Sbjct: 72  VGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANREMKLG---KWN 128

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
              + G  L+G+T+G+IG GRIG   A++      MN+I YD Y        +       
Sbjct: 129 KKKYKGIELRGKTLGIIGFGRIGREVAKI-ARALGMNVIAYDPYPKDEQAVELGV----- 182

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                      +  S++E+L+ +D ISLH  L   T H+INK+ L  MK  AI++N SRG
Sbjct: 183 -----------KTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRG 231

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 242
            VIDE AL+E LK   +    LDVFE+EP     L E+ N  + PHI +++K  +E +  
Sbjct: 232 GVIDEEALLEALKSGKLAGAALDVFENEPPPGSKLLELPNVSLTPHIGASTKEAQERIGE 291

Query: 243 LAALNVL 249
             A  ++
Sbjct: 292 ELANKII 298

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  202 bits (515), Expect = 2e-63
 Identities = 93/251 (37%), Positives = 136/251 (54%), Gaps = 17/251 (6%)

Query: 4   GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 63
           GY+ +DV+A  K GI V NTPG + E TA+ A  L L A R    A+   RAG + G+L 
Sbjct: 86  GYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAERSARAGKWRGFLD 145

Query: 64  NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
                +  +G+T+G++G G IG A AR     F M +IY++  +     +   A      
Sbjct: 146 LTLAHDP-RGKTLGILGLGGIGKAIARKAA-AFGMKIIYHNRSRLPEELEKALA------ 197

Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
                        S+DE+L ++DV+SL+  L   T HLINK+  A MK   I+VN +RG 
Sbjct: 198 ---------TYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGA 248

Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATL 243
           VIDE ALV+ L+   +   GLDVFE+EP + PGL +M N  ++PH+ + +  T+E M  L
Sbjct: 249 VIDEDALVDALESGKVASAGLDVFENEPEVNPGLLKMPNVTLLPHMGTLTVETQEKMEEL 308

Query: 244 AALNVLGKIKG 254
              N+   ++ 
Sbjct: 309 VLENIEAFLET 319

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  196 bits (500), Expect = 3e-61
 Identities = 101/259 (38%), Positives = 135/259 (52%), Gaps = 23/259 (8%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 61
            VG + VD+ AA   GI V N PG   E+ AE A  L LA  RR+ EAD  +RAG    W
Sbjct: 73  GVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLALLRRLPEADRELRAG---RW 129

Query: 62  -LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
             P       L G+TVG++G G IG A AR +  GF + +IYYD               +
Sbjct: 130 GRPEGRPSRELSGKTVGIVGLGNIGRAVARRLR-GFGVEVIYYD---------------R 173

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           F     E+     R   +DE+L E+DV+SLH  L   T HLI  E LA MK  AIL+N +
Sbjct: 174 FRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPGAILINTA 233

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTRE 238
           RG ++DE AL+  L+   +   GLDVF  EP + P   L  + N I+ PHIA  +  + +
Sbjct: 234 RGGLVDEEALLAALRSGHLAGAGLDVFWQEP-LPPDDPLLRLDNVILTPHIAGVTDESYQ 292

Query: 239 GMATLAALNVLGKIKGYPI 257
            MA + A N+   ++G P 
Sbjct: 293 RMAAIVAENIARLLRGEPP 311

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  189 bits (482), Expect = 2e-60
 Identities = 88/196 (44%), Positives = 109/196 (55%), Gaps = 24/196 (12%)

Query: 37  SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 96
           +L LA ARRI EAD  +RAG    W P+  +G  L G+TVG+IG GRIG A AR + + F
Sbjct: 2   ALLLALARRIPEADRQVRAG---RWRPDALLGRELSGKTVGIIGLGRIGRAVARRL-KAF 57

Query: 97  KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 156
            M +I YD Y     E     Y                  S+DE+L E+DV+SLH  L  
Sbjct: 58  GMKVIAYDRYPKAEAEALGARY-----------------VSLDELLAESDVVSLHLPLTP 100

Query: 157 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG 216
            T HLIN ERLA MK  AIL+N +RG ++DE AL+  LK   +    LDVFE EP   P 
Sbjct: 101 ETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPL-PPD 159

Query: 217 --LSEMKNAIVVPHIA 230
             L E+ N I+ PHIA
Sbjct: 160 HPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  193 bits (492), Expect = 5e-60
 Identities = 95/259 (36%), Positives = 131/259 (50%), Gaps = 24/259 (9%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
             VG +NVDV AA + GI V N P   TE  A+ A +L LA AR++   D  +RAG +D 
Sbjct: 72  YGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWDW 131

Query: 61  WLPNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 118
            +     G +  L+G T+G++G GRIG A A+   + F   +I YD Y            
Sbjct: 132 TV----GGPIRRLRGLTLGLVGFGRIGRAVAKRA-KAFGFRVIAYDPY------------ 174

Query: 119 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 178
                 +G   +   R  S+DE+L  +DV+SLH  L   T HLI+ E LA MK  A LVN
Sbjct: 175 ----VPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVN 230

Query: 179 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTR 237
            +RG ++DE AL   LK   +    LDV E+EP      L    N I+ PH A  S+ + 
Sbjct: 231 TARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPLLSAPNVILTPHAAWYSEESL 290

Query: 238 EGMATLAALNVLGKIKGYP 256
             +   AA  V+  ++G P
Sbjct: 291 AELRRKAAEEVVRVLRGEP 309

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  191 bits (488), Expect = 4e-57
 Identities = 98/241 (40%), Positives = 126/241 (52%), Gaps = 33/241 (13%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           VG +NVDV AA + GI V N P   T + AE   +L LA AR I +A   ++AG    W 
Sbjct: 73  VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGK---WE 129

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY----QATRLEKFVTAY 118
              F+G  L G+T+G+IG GRIGS  A+   + F M +I YD Y    +A +L       
Sbjct: 130 RKKFMGVELYGKTLGIIGLGRIGSEVAKRA-KAFGMKVIAYDPYISPERAAQL------- 181

Query: 119 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 178
                  G + V      S+DE+L  AD I+LH  L   T  LI  E LA MK    ++N
Sbjct: 182 -------GVELV------SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIIN 228

Query: 179 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP-YMKPGLSEMKNAIVVPHIASASKWTR 237
           C+RG +IDE AL E LK   +    LDVFE EP    P L E+ N +V PH+  AS  T 
Sbjct: 229 CARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSP-LFELPNVVVTPHLG-AS--TA 284

Query: 238 E 238
           E
Sbjct: 285 E 285

Length = 526

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  185 bits (471), Expect = 8e-57
 Identities = 95/258 (36%), Positives = 144/258 (55%), Gaps = 22/258 (8%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 61
           +GY+NVD+ AA ++G+ V   PG V  +  AE A +L L   R+I +A E ++ G +   
Sbjct: 78  IGYDNVDLKAATEHGVIVTRVPGAVERDAVAEHAVALILTVLRKINQASEAVKEGKWT-- 135

Query: 62  LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
               FVG+ L G+TVG+IG G IGS  A ++ EGF   ++ YD Y +           + 
Sbjct: 136 ERANFVGHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAYDPYVSE----------EV 185

Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
           +K  G +PV      S++E+L E+D+ISLH  L + TYH+IN++  + MKK  ILVN +R
Sbjct: 186 IKKKGAKPV------SLEELLAESDIISLHAPLTEETYHMINEKAFSKMKKGVILVNTAR 239

Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREG 239
           G +IDE AL+E LK   +   GLDV E+EP +K    L   +N ++ PHI + +  +  G
Sbjct: 240 GELIDEEALIEALKSGKIAGAGLDVLEEEP-IKADHPLLHYENVVITPHIGAYTYESLYG 298

Query: 240 MATLAALNVLGKIKGYPI 257
           M      ++   + G   
Sbjct: 299 MGEKVVDDIEDFLAGKEP 316

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  183 bits (468), Expect = 2e-56
 Identities = 90/255 (35%), Positives = 132/255 (51%), Gaps = 30/255 (11%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY-- 58
           +A GYNNVD+ AA + GI V N PG  T++ A+   +L LA AR +   ++ ++AG +  
Sbjct: 72  LATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQK 131

Query: 59  -DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL-EKFVT 116
              +    +    L G+T+G+IG G IG A AR+    F M +++ +   A  L E +V 
Sbjct: 132 SPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARI-ARAFGMKVLFAERKGAPPLREGYV- 189

Query: 117 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 176
                               S+DE+L ++DVISLH  L   T +LIN E LA MK  AIL
Sbjct: 190 --------------------SLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAIL 229

Query: 177 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG---LSEMKNAIVVPHIASAS 233
           +N +RG ++DE AL + L    +   GLDV   EP  +     L    N I+ PHIA AS
Sbjct: 230 INTARGGLVDEQALADALNSGKIAGAGLDVLSQEP-PRADNPLLKAAPNLIITPHIAWAS 288

Query: 234 KWTREGMATLAALNV 248
           +  R+ +  +   N+
Sbjct: 289 REARQRLMDILVDNI 303

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  183 bits (467), Expect = 2e-56
 Identities = 94/247 (38%), Positives = 135/247 (54%), Gaps = 24/247 (9%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           VGY+ +D++AA   GI V NTPGVLT+  A+LA  L LA  RRI  AD F+RAG    W 
Sbjct: 73  VGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFVRAG---RWP 129

Query: 63  PNLF-VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
              F +   + G+ VG++G GRIG A AR  +E F M + Y+      R  K        
Sbjct: 130 KGAFPLTRKVSGKRVGIVGLGRIGRAIAR-RLEAFGMEIAYHG-----RRPK-------- 175

Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
                   V ++  +S+ E+  E+DV+ +       T HL+N E L  +  + +LVN +R
Sbjct: 176 ------PDVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVAR 229

Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 241
           G V+DE AL+  L++  +   GLDVFE+EP +   L ++ N ++ PHIASA+  TR  M 
Sbjct: 230 GSVVDEAALIAALQEGRIAGAGLDVFENEPNVPAALLDLDNVVLTPHIASATVETRRAMG 289

Query: 242 TLAALNV 248
            L   N+
Sbjct: 290 DLVLANL 296

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  180 bits (460), Expect = 3e-55
 Identities = 82/269 (30%), Positives = 123/269 (45%), Gaps = 35/269 (13%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 61
           A GY+N+D++ A + GI V N P       AE   +L LA  R     DE  +       
Sbjct: 75  ATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQDLQ-D 133

Query: 62  LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
              +  G  L+ QTVGV+G G+IG A A+   +GF M +I YD ++   LE     Y   
Sbjct: 134 AGVI--GRELEDQTVGVVGTGKIGRAVAQRA-KGFGMKVIAYDPFRNPELEDKGVKY--- 187

Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
                          S++E+ + +D+ISLH  L    +H+IN+E    MKK  I++N +R
Sbjct: 188 --------------VSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTAR 233

Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--------------KPGLSEMKNAIVVP 227
           G ++D  AL+E L    +F  GLDV EDE                    L    N I+ P
Sbjct: 234 GSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRRPNVIITP 293

Query: 228 HIASASKWTREGMATLAALNVLGKIKGYP 256
           H A  +    + M  ++  N++  ++G  
Sbjct: 294 HTAFYTDDALKNMVEISCENIVDFLEGEE 322

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  178 bits (454), Expect = 2e-54
 Identities = 80/233 (34%), Positives = 120/233 (51%), Gaps = 21/233 (9%)

Query: 4   GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 63
           G  NVDV AA + GI V NTPG   E  AE    L LA  R I  A   ++ G +     
Sbjct: 77  GPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYY 136

Query: 64  NL-FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
           N    G  L+G+TVG++G G IG   A+ + + F   ++ YD         +V    + +
Sbjct: 137 NYDGYGPELRGKTVGIVGFGAIGRRVAKRL-KAFGAEVLVYD--------PYVDP--EKI 185

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
           +A+G + V      S++E+L+ +DV+SLH  L   T  +I  E  A MK  A  +N +R 
Sbjct: 186 EADGVKKV------SLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARA 239

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASAS 233
            ++DE AL+E L++  +    LDVF +EP +     L ++ N  + PHIA A+
Sbjct: 240 GLVDEDALIEALEEGKIGGAALDVFPEEP-LPADHPLLKLDNVTLTPHIAGAT 291

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  178 bits (455), Expect = 3e-54
 Identities = 82/242 (33%), Positives = 120/242 (49%), Gaps = 34/242 (14%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
            G + +D++ A + G+ + N P       AE A + +L   R   E D  +  G +  W 
Sbjct: 77  AGVDMIDLDLAKENGLKITNVPAYSPRAIAEFAVTQALNLLRNTPEIDRRVAKGDFR-WA 135

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
           P L +G  ++  TVG+IG GRIGSA A++  +GF   +I YD Y    LEKF+  Y    
Sbjct: 136 PGL-IGREIRDLTVGIIGTGRIGSAAAKIF-KGFGAKVIAYDPYPNPELEKFLLYY---- 189

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                         S++++L++AD+ISLH  L K  +HLIN E  A MK  AILVN +RG
Sbjct: 190 -------------DSLEDLLKQADIISLHVPLTKENHHLINAEAFAKMKDGAILVNAARG 236

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDE-PYMKPGLS-------------EMKNAIVVPH 228
            ++D  AL++ L    +    LD +E+E  Y     S              M N ++ PH
Sbjct: 237 GLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDEVLKELIAMPNVLITPH 296

Query: 229 IA 230
           IA
Sbjct: 297 IA 298

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  178 bits (453), Expect = 3e-54
 Identities = 84/256 (32%), Positives = 120/256 (46%), Gaps = 16/256 (6%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
             VG +N+D++AA + GI V N PG  TE+ AEL   L LA ARRI EAD  +RAG +  
Sbjct: 67  RGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASVRAGDWKK 126

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
             P       L G+T+GVIG G IG   A +  +   M ++ YD Y      +       
Sbjct: 127 GGPIGL---ELYGKTLGVIGGGGIGGIGAAIA-KALGMGVVAYDPYPNPERAEEGGVEVL 182

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
            L               + ++    D+I+L P     T H+I  E    +K    + N  
Sbjct: 183 LLDLL------------LLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNAR 230

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
            G VI+E AL   L++         V E+ P +   L ++ N I+ PHIA A++  +E M
Sbjct: 231 GGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGATEEAQENM 290

Query: 241 ATLAALNVLGKIKGYP 256
           A  AA N+L  +KG  
Sbjct: 291 AEEAAENLLAFLKGGT 306

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  179 bits (457), Expect = 9e-53
 Identities = 101/281 (35%), Positives = 146/281 (51%), Gaps = 37/281 (13%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           VG +N+D+ AA   GI V N P   T + AE A ++ LAAAR I +AD  ++ G    W 
Sbjct: 71  VGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEG---EWD 127

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY----QATRLEKFVTAY 118
              F+G  L G+T+GVIG GRIGS  A+   + F M ++ YD Y    +A +L       
Sbjct: 128 RKAFMGTELYGKTLGVIGLGRIGSIVAKR-AKAFGMKVLAYDPYISPERAEQL------- 179

Query: 119 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 178
                         +    +DE+L  AD I++H  L   T  LI  E LA MKK  I+VN
Sbjct: 180 ------------GVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVN 227

Query: 179 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 238
           C+RG +IDE AL E L++  +    LDVFE EP     L ++ N I  PH+ ++++  +E
Sbjct: 228 CARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQE 287

Query: 239 GMATLAALNVLGKIKGYPIWGNPN----------QVEPFLN 269
            +AT  A  VL  +KG P+    N          +++P+L+
Sbjct: 288 NVATQVAEQVLDALKGLPVPNAVNAPGIDADVMEKLKPYLD 328

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  174 bits (443), Expect = 1e-52
 Identities = 92/256 (35%), Positives = 137/256 (53%), Gaps = 19/256 (7%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           ++VGY+N DV+A     I + +TP VLTET A+   +L L+ ARR+VE  E ++AG +  
Sbjct: 73  ISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTA 132

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
            +   + G  +  +T+G++G GRIG A A+    GF M ++Y         E+   A   
Sbjct: 133 SIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNA--- 189

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                        R   +D +L+E+D + +   L   T+HL   E+ A MK  AI +N  
Sbjct: 190 -------------RYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAG 236

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASASKWTRE 238
           RGPV+DE AL+  L++  +   GLDVFE EP     P LS + N + VPHI SA+  TR 
Sbjct: 237 RGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLS-LPNVVAVPHIGSATHETRY 295

Query: 239 GMATLAALNVLGKIKG 254
            MA  A  N++  ++G
Sbjct: 296 NMAACAVDNLIDALQG 311

Length = 323

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  171 bits (435), Expect = 2e-51
 Identities = 93/260 (35%), Positives = 133/260 (51%), Gaps = 30/260 (11%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
            G ++VD+ A  + GI V N  G  TE  AEL   L++   R IV  D  +RAG      
Sbjct: 78  TGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAG----GT 133

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
               +G  L G+TVG++G G IG   AR+  + F   ++ Y      R EK      +  
Sbjct: 134 KAGLIGRELAGKTVGIVGTGAIGLRVARL-FKAFGCKVLAYS-----RSEK------EEA 181

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
           KA G   + +    S+DE+L E+D++SLH  L+  T  LI KE+LA MK+ AIL+N +RG
Sbjct: 182 KALG---IEYV---SLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARG 235

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGM 240
           PV+D  AL + L +  +   G+DVF+ EP +     L    N I+ PH+A A   T E M
Sbjct: 236 PVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFA---TEEAM 292

Query: 241 ATLAAL---NVLGKIKGYPI 257
              A +   N+   + G P 
Sbjct: 293 EKRAEIVFDNIEAWLAGKPQ 312

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  171 bits (435), Expect = 2e-51
 Identities = 97/260 (37%), Positives = 127/260 (48%), Gaps = 26/260 (10%)

Query: 4   GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 63
           GY+N DV A    GI V   P +LTE TAEL   L +   R I+  D F+R+G + GW P
Sbjct: 76  GYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGRHILAGDRFVRSGKFGGWRP 135

Query: 64  NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
             + G  L G+TVG++G G +G A AR +  GF   L+YYD            A  Q L 
Sbjct: 136 KFY-GTGLDGKTVGILGMGALGRAIARRLS-GFGATLLYYD------PHPLDQAEEQALN 187

Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
                     R   +DE+L  +D + L   L   T HLIN E LA MK  A+LVN  RG 
Sbjct: 188 L---------RRVELDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPCRGS 238

Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP--------GLSEMK-NAIVVPHIASASK 234
           V+DE A+ E LK   +     DVFE E + +P         L +     +  PHI SA  
Sbjct: 239 VVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVFTPHIGSAVD 298

Query: 235 WTREGMATLAALNVLGKIKG 254
             R  +   AALN+L  ++G
Sbjct: 299 EVRLEIELEAALNILQALQG 318

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  168 bits (428), Expect = 3e-50
 Identities = 84/207 (40%), Positives = 113/207 (54%), Gaps = 21/207 (10%)

Query: 4   GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 63
           G+NNVD+ AA + GI V   P       AE A +L LA  R+I  A   +R G +   L 
Sbjct: 78  GFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVREGNFS--LD 135

Query: 64  NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
            L +G  L G+TVGVIG G+IG A+AR++  GF   ++ YD Y    L K    Y     
Sbjct: 136 GL-LGFDLHGKTVGVIGTGKIGQAFARILK-GFGCRVLAYDPYPNPELAKLGVEYV---- 189

Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
                         +DE+L E+D+ISLH  L   T+HLIN E +A MK   +L+N SRG 
Sbjct: 190 -------------DLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGG 236

Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDE 210
           +ID  AL+E LK   +  +GLDV+E+E
Sbjct: 237 LIDTKALIEALKSGKIGGLGLDVYEEE 263

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  166 bits (423), Expect = 2e-49
 Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 53/255 (20%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADE------FMRAG 56
            G++++D+ A  + GIAV N P     T AE A +L LA +R++ EA E      F +AG
Sbjct: 72  TGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAIERTRRGDFSQAG 131

Query: 57  LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 116
           L          G  L G+T+GV+G GRIG   AR+   GF M ++ YD+      E+   
Sbjct: 132 L---------RGFELAGKTLGVVGTGRIGRRVARIAR-GFGMKVLAYDVVPD---EELAE 178

Query: 117 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 176
             G              R  S++E+L+E+D+ISLH      T+HLIN+E  A MK  A+L
Sbjct: 179 RLGF-------------RYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVL 225

Query: 177 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-------------------- 216
           +N +RG V+D  ALV  LK+  +   GLDV E E  ++                      
Sbjct: 226 INTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADH 285

Query: 217 -LSEMKNAIVVPHIA 230
            L    N I+ PH+A
Sbjct: 286 ALLRKPNVIITPHVA 300

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  160 bits (407), Expect = 2e-47
 Identities = 89/253 (35%), Positives = 125/253 (49%), Gaps = 23/253 (9%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           +   ++D+ AA + GI V  T G     TAEL  +L LA AR + E D  +RAG   GW 
Sbjct: 78  MRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILALARNLPEEDAALRAG---GWQ 133

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
             L  G  L G+T+G++G GRIG+  AR+  + F M                V A+   L
Sbjct: 134 TTL--GTGLAGKTLGIVGLGRIGARVARIG-QAFGMR---------------VIAWSSNL 175

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
            A        + A S +E+   +DV+SLH VL   T  L+  E LA MK  A+LVN SRG
Sbjct: 176 TAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRG 235

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEP-YMKPGLSEMKNAIVVPHIASASKWTREGMA 241
           P++DE AL+  L+   +    LDVF+ EP      L  + N ++ PHI   ++   EG  
Sbjct: 236 PLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVTEEAYEGFY 295

Query: 242 TLAALNVLGKIKG 254
             A  N+   + G
Sbjct: 296 GQAVENIAAWLAG 308

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  158 bits (403), Expect = 8e-47
 Identities = 83/233 (35%), Positives = 115/233 (49%), Gaps = 25/233 (10%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-- 60
            G NN+DV+AA+K GI V NTPG      AEL  ++ LA +R I++A +++  G  D   
Sbjct: 59  AGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQAIKWVTNGDGDDIS 118

Query: 61  ----WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 116
                    FVG  L+G+T+GVIG G IG   A        M +I YD Y +      ++
Sbjct: 119 KGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANA-ALALGMKVIGYDPYLSVEAAWKLS 177

Query: 117 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 176
              Q             R +S++E+L  AD I+LH  L   T  LIN E LA MK  AIL
Sbjct: 178 VEVQ-------------RVTSLEELLATADYITLHVPLTDETRGLINAELLAKMKPGAIL 224

Query: 177 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHI 229
           +N +RG ++DE AL+E L +  +     D  E        L  + N I  PH+
Sbjct: 225 LNFARGEIVDEEALLEALDEGKLGGYVTDFPEPA-----LLGHLPNVIATPHL 272

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  153 bits (389), Expect = 1e-44
 Identities = 79/247 (31%), Positives = 116/247 (46%), Gaps = 47/247 (19%)

Query: 3   VGYNNVDVNAANKYGIAVGNTP----GVLTETTAELAASLSLAAARRIVEADEFMRAGLY 58
           +GY+++D++AA + GI V N       V     A+    L L A R+  +     RA + 
Sbjct: 77  IGYDHIDLDAAKELGIKVSNVTYSPNSV-----ADYTVMLMLMALRKYKQI--MKRAEVN 129

Query: 59  DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 118
           D  L  L  G  L+  TVGVIG GRIG A  + +  GF   ++ YD Y    ++K+   Y
Sbjct: 130 DYSLGGL-QGRELRNLTVGVIGTGRIGQAVIKNL-SGFGCKILAYDPYPNEEVKKYAE-Y 186

Query: 119 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 178
                              +D + +E+D+I+LH  L + TYHLINKE +A MK   I++N
Sbjct: 187 -----------------VDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIIN 229

Query: 179 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNA 223
            +RG +ID  AL+E L+   +    LDV E E                 +   L    N 
Sbjct: 230 TARGELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELAI-LRSFPNV 288

Query: 224 IVVPHIA 230
           I+ PH+A
Sbjct: 289 ILTPHMA 295

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  152 bits (387), Expect = 2e-44
 Identities = 83/264 (31%), Positives = 123/264 (46%), Gaps = 28/264 (10%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
            + G +++ +    + G+ V N  G  +   AE A +L LA A+RIVE D  +R G++ G
Sbjct: 67  PSAGVDHLPLERLPE-GVVVANNHG-NSPAVAEHALALILALAKRIVEYDNDLRRGIWHG 124

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
                     L+G+TVG++G G IG   AR++ + F M                V    +
Sbjct: 125 RAGEEPESKELRGKTVGILGYGHIGREIARLL-KAFGMR---------------VIGVSR 168

Query: 121 FLKANGEQPVTWKRASSM-DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
             K   ++   +    S  DE L +ADV+ +   L K T  LI    LA MK  AILVN 
Sbjct: 169 SPKE--DEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNV 226

Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVF----EDEPYMKP---GLSEMKNAIVVPHIASA 232
            RGPV+DE AL E LK+ P+    +DV+         + P      E+ N I+ PH A  
Sbjct: 227 GRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGW 286

Query: 233 SKWTREGMATLAALNVLGKIKGYP 256
           ++ T       AA N+   ++G P
Sbjct: 287 TEETFRRRIDEAAENIRRYLRGEP 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  142 bits (361), Expect = 1e-40
 Identities = 81/258 (31%), Positives = 128/258 (49%), Gaps = 34/258 (13%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
            A G NNVD+  A K GIAV N  G  TE+ A+   ++ L+   RI   D ++++G Y  
Sbjct: 70  TATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSE 129

Query: 61  WLPNLFVG-----NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 115
               +F         +KG+  G+IG G IG   A++  + F   ++YY      + E++ 
Sbjct: 130 --SPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKI-AQAFGAKVVYYSTSGKNKNEEY- 185

Query: 116 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 175
                                S++E+L+ +D+IS+H  L++ T +LI  + L  +K  AI
Sbjct: 186 ------------------ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAI 227

Query: 176 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNA---IVVPHIA 230
           L+N  RG +++E  L + L +  +   GLDV E EP  K  P LS +KN    ++ PHIA
Sbjct: 228 LINVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEPMEKNHPLLS-IKNKEKLLITPHIA 285

Query: 231 SASKWTREGMATLAALNV 248
            ASK  R+ +      N+
Sbjct: 286 WASKEARKTLIEKVKENI 303

Length = 311

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  142 bits (360), Expect = 3e-40
 Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 24/231 (10%)

Query: 17  GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 76
           GI V +      E  AE   +  L A RRI       RAG  D   P    G  L G+TV
Sbjct: 95  GILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAG-RDWGWPTRRGGRGLYGRTV 153

Query: 77  GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 136
           G++G GRIG A   + +  F + ++ YD         ++ A      A G          
Sbjct: 154 GIVGFGRIGRAVVEL-LRPFGLRVLVYD--------PYLPA--AEAAALGV------ELV 196

Query: 137 SMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 195
           S+DE+L  +DV+SLH P+  +T   +I+   LA M+  A  +N +RG ++DE AL+  L+
Sbjct: 197 SLDELLARSDVVSLHAPLTPETR-GMIDARLLALMRDGATFINTARGALVDEAALLAELR 255

Query: 196 QNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLA 244
                R  LDV + EP + P   L  + N ++ PHIA ++   R  +   A
Sbjct: 256 SG-RLRAALDVTDPEP-LPPDSPLRTLPNVLLTPHIAGSTGDERRRLGDYA 304

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  138 bits (350), Expect = 5e-39
 Identities = 79/233 (33%), Positives = 119/233 (51%), Gaps = 29/233 (12%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           +G N VD++AA K GI V N P   T + AEL     +  ARR+ + +     G    W 
Sbjct: 73  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRG---IWN 129

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
            +    + ++G+T+G+IG G IGS  + +  E   M +I+YD+  A +L       G   
Sbjct: 130 KSATGSHEVRGKTLGIIGYGHIGSQLSVL-AEALGMRVIFYDI--AEKL-----PLG--- 178

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                     ++ SS++E+L EAD ++LH     +T ++I  E +A MKK AIL+N SRG
Sbjct: 179 --------NARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRG 230

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHI 229
            V+D  AL E L+   +    +DVF        EP+  P L  + N I+ PHI
Sbjct: 231 TVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSP-LQGLPNVILTPHI 282

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  135 bits (342), Expect = 2e-37
 Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 48/232 (20%)

Query: 4   GYNNVDVNAANKYGIAVGNTPGVLTETTAE-LAASLSLAAARRIVEADEFMRAGLYDGWL 62
           G +++D +   + GI   N PG    + AE + ++L + A R+                 
Sbjct: 67  GTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLAQRQ----------------- 109

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
                G  LKG+TVG++G G +GS  AR  +E   MN++  D  +A              
Sbjct: 110 -----GFSLKGKTVGIVGVGNVGSRLARR-LEALGMNVLLCDPPRAEAEGDPGFV----- 158

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVN 178
                         S++E+L EAD+I+LH  L +     TYHL++++ LA +K   IL+N
Sbjct: 159 --------------SLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILIN 204

Query: 179 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 230
            SRG VID  AL+  L++    RV LDV+E+EP +   L + K  I  PHIA
Sbjct: 205 ASRGAVIDNQALLALLQRGKDLRVVLDVWENEPEIDLELLD-KVDIATPHIA 255

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  127 bits (321), Expect = 1e-34
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 26/211 (12%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY--DG 60
           VG+N++D+ AA + G  +   P       AELA +L++  +R             +  D 
Sbjct: 77  VGFNHIDLEAAKELGFKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRTANKNFKVD- 135

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
             P +F    ++  TVG+IG GRIG   A++  +G    +I YD+Y +   +  VT    
Sbjct: 136 --PFMF-SKEIRNSTVGIIGTGRIGLTAAKLF-KGLGAKVIGYDIYPSDAAKDVVTFV-- 189

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNC 179
                           S+DE+L+++D+ISLH P +      LINKE ++ MK  AIL+N 
Sbjct: 190 ----------------SLDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILINT 233

Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 210
           +RG + DE A++E L+   +   G DV  +E
Sbjct: 234 ARGELQDEEAILEALESGKLAGFGTDVLNNE 264

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  122 bits (310), Expect = 2e-32
 Identities = 76/233 (32%), Positives = 115/233 (49%), Gaps = 29/233 (12%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           +G N VD++AA K GI V N P   T + AEL     +   R I E +     G   GW 
Sbjct: 84  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRG---GWN 140

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
            +      ++G+T+G++G G IG+  + ++ E   M + +YD+    +L       G   
Sbjct: 141 KSAAGSFEVRGKTLGIVGYGHIGTQLS-VLAESLGMRVYFYDI--EDKL-----PLG--- 189

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
             N  Q        S++E+L ++DV+SLH     +T ++I  E LA MK  AIL+N SRG
Sbjct: 190 --NARQ------VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRG 241

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHI 229
            V+D  AL + LK   +    +DVF        +P+  P L  + N I+ PHI
Sbjct: 242 TVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESP-LRGLDNVILTPHI 293

Length = 409

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  121 bits (305), Expect = 2e-32
 Identities = 83/268 (30%), Positives = 124/268 (46%), Gaps = 40/268 (14%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 61
           A G NNVD+ AA + GI V N  G  T + A+   +L LA A R+ +  + + AG    W
Sbjct: 74  ATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAG---RW 130

Query: 62  -------LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 114
                  L + F    L+G+T+G++G G +G A AR+  E F M ++             
Sbjct: 131 QQSSQFCLLD-FPIVELEGKTLGLLGHGELGGAVARL-AEAFGMRVLI------------ 176

Query: 115 VTAYGQFLKANGEQPVTWKRASSM--DEVLREADVISLHPVLDKTTYHLINKERLATMKK 172
                      G+ P    R   +  DE+L + D ++LH  L + T HLI    LA MK 
Sbjct: 177 -----------GQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP 225

Query: 173 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSE-MKNAIVVPHI 229
            A+L+N +RG ++DE AL + L+   +     DV   EP +   P L+  +   IV PH 
Sbjct: 226 GALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHS 285

Query: 230 ASASKWTREGMATLAALNVLGKIKGYPI 257
           A  S+  R+ +    A N      G P+
Sbjct: 286 AWGSREARQRIVGQLAENARAFFAGKPL 313

Length = 317

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  120 bits (302), Expect = 6e-32
 Identities = 75/246 (30%), Positives = 113/246 (45%), Gaps = 41/246 (16%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 61
           A G NNVD+ AA + GIAV N  G  + T  E    +  A    ++    + R  L D W
Sbjct: 73  ATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMG---WYRDQLSDRW 129

Query: 62  LPNLFVGNL---------LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 112
                             ++G T+GV G G +G+   R+  +   M ++Y +   A+   
Sbjct: 130 ATC---KQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRL-AQALGMKVLYAEHKGASVCR 185

Query: 113 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 172
           +  T +                    +EVL++AD+++LH  L +TT +LIN E LA MK 
Sbjct: 186 EGYTPF--------------------EEVLKQADIVTLHCPLTETTQNLINAETLALMKP 225

Query: 173 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP-----GLSEMKNAIVVP 227
            A L+N  RGP++DE AL++ L+   +    LDV   EP  K          + N ++ P
Sbjct: 226 TAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITP 285

Query: 228 HIASAS 233
           HIA AS
Sbjct: 286 HIAWAS 291

Length = 314

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  117 bits (294), Expect = 8e-31
 Identities = 76/245 (31%), Positives = 115/245 (46%), Gaps = 36/245 (14%)

Query: 4   GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 63
           G  N+D+  A + GI + N P    +   E A  + LA   ++  AD+ +R G+   W  
Sbjct: 72  GLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVRNGI---WDR 128

Query: 64  NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
               G  L G+TVG+IG G +G A+A+ +  GF   +I YD Y+             F  
Sbjct: 129 EGNRGVELMGKTVGIIGYGNMGKAFAKRL-SGFGCKVIAYDKYK------------NFGD 175

Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
           A  EQ        S++ + +EAD++SLH  L   T  ++NKE +++ KK    +N +RG 
Sbjct: 176 AYAEQ-------VSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGK 228

Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPG----LSEMKNAIVVPHIASAS 233
           V+    LV+ LK   +    LDV E E       + +P     L +    I+ PHIA   
Sbjct: 229 VVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAG-- 286

Query: 234 KWTRE 238
            WT E
Sbjct: 287 -WTFE 290

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  115 bits (291), Expect = 2e-30
 Identities = 71/258 (27%), Positives = 104/258 (40%), Gaps = 39/258 (15%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
            + G + +      +  + + N  G+     AE      LA AR++              
Sbjct: 66  TSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARNQAERR--- 122

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-- 118
           W     V   L G+TV ++G G IG   AR   + F M                V     
Sbjct: 123 WQRRGPVR-ELAGKTVLIVGLGDIGREIARRA-KAFGMR---------------VIGVRR 165

Query: 119 -GQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAIL 176
            G+      ++  T      +DE+L EAD V++  P L   T  L N ER A MK  A+L
Sbjct: 166 SGRPAPPVVDEVYT---PDELDELLPEADYVVNALP-LTPETRGLFNAERFAAMKPGAVL 221

Query: 177 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIA 230
           +N  RG V+DE AL+E L+   +    LDVFE+EP     L        + N I+ PHI+
Sbjct: 222 INVGRGSVVDEDALIEALESGRIAGAALDVFEEEP-----LPADSPLWDLPNVIITPHIS 276

Query: 231 SASKWTREGMATLAALNV 248
             S    E +  +   N+
Sbjct: 277 GDSPSYPERVVEIFLENL 294

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score =  110 bits (277), Expect = 3e-28
 Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 35/242 (14%)

Query: 4   GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-GWL 62
           G++  D+  A KY + + N P    E+ AE   + ++   R   +    +R   +D  W 
Sbjct: 79  GFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVR--EHDFRWE 136

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
           P + +   +K   V VIG GRIG A A++  +G+  +++ YD +   +   +V       
Sbjct: 137 PPI-LSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVD------ 189

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                         +++E +  AD+++LH    K  ++L N +     KK A+ VNC+RG
Sbjct: 190 -----------YKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARG 238

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--------------LSEMKNAIVVPH 228
            ++D  AL++ L    +    LD +E E  + P               L   ++ I+ PH
Sbjct: 239 SLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPH 298

Query: 229 IA 230
           IA
Sbjct: 299 IA 300

Length = 332

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  107 bits (270), Expect = 2e-27
 Identities = 74/230 (32%), Positives = 105/230 (45%), Gaps = 26/230 (11%)

Query: 22  NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 81
           N  G   ET AE A +L LA  R++       RA  +D       +  LL+G TV ++GA
Sbjct: 78  NAAGAYAETVAEHALALLLAGLRQLPA---RARATTWDPAEE-DDLVTLLRGSTVAIVGA 133

Query: 82  GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 141
           G IG A   ++   F   +I             V   G+     G        A  +DEV
Sbjct: 134 GGIGRALIPLLA-PFGAKVIA------------VNRSGR--PVEGADETV--PADRLDEV 176

Query: 142 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 201
             +AD + L   L   T HL++   LA MK  A LVN +RGP++D  ALV+ L+   +  
Sbjct: 177 WPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAG 236

Query: 202 VGLDVFEDEPYMKPG---LSEMKNAIVVPHIASASKWTREGMATLAALNV 248
             LDV + EP   P    L  + NA++ PH+A+  +  R  +A   A NV
Sbjct: 237 AALDVTDPEPL--PDGHPLWSLPNALITPHVANTPEVIRPLLAERVAENV 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score =  105 bits (264), Expect = 2e-26
 Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 35/241 (14%)

Query: 4   GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 63
           G++  D++ A K+ I + N P    ET AE + S++L   RR  + +  ++A  +     
Sbjct: 79  GFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE 138

Query: 64  NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
              +   +K  TV +IG GRIG+A A++   GF   +  YD Y    L+        FL 
Sbjct: 139 --IMSKPVKNMTVAIIGTGRIGAATAKIYA-GFGATITAYDAYPNKDLD--------FL- 186

Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
                  T+K   S+ E +++AD+ISLH   +K +YHL +K     +KK AILVN +RG 
Sbjct: 187 -------TYK--DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237

Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDE-PYM----------KPGLSEM---KNAIVVPHI 229
           VI+   L+  +    +    +D +E+E  Y              L E+   +  +V PHI
Sbjct: 238 VINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHI 297

Query: 230 A 230
           A
Sbjct: 298 A 298

Length = 330

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  104 bits (263), Expect = 2e-26
 Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 46/242 (19%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
            + G + + +    K GI + N  G+ +   AE      L   + + +A +  +      
Sbjct: 67  YSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYKNQKEKK--- 123

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI----------YYDLYQATR 110
           W  +  +  L  G+T+  +G G IG   A+ + + F M +I          Y+D      
Sbjct: 124 WKMDSSLLEL-YGKTILFLGTGSIGQEIAKRL-KAFGMKVIGVNTSGRDVEYFD------ 175

Query: 111 LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLAT 169
            + +            E          +DEVL+EAD V+++ P L + T+HL ++     
Sbjct: 176 -KCY---------PLEE----------LDEVLKEADIVVNVLP-LTEETHHLFDEAFFEQ 214

Query: 170 MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVP 227
           MKK A+ +N  RGP +DE AL+E LK   +    LDVFE+EP  K  P L ++ N ++ P
Sbjct: 215 MKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSP-LWDLDNVLITP 273

Query: 228 HI 229
           HI
Sbjct: 274 HI 275

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score =  105 bits (265), Expect = 3e-26
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 25/167 (14%)

Query: 71  LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 130
           L  +T GV+GAG +G    R++  G    ++  D  +           G F+        
Sbjct: 114 LAERTYGVVGAGHVGGRLVRVL-RGLGWKVLVCDPPRQEAEGD-----GDFV-------- 159

Query: 131 TWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGPVID 186
                 S++ +L E DVISLH  L K     T HL+++  LA+++  A L+N SRG V+D
Sbjct: 160 ------SLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVD 213

Query: 187 EVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 233
             AL E L         LDV+E EP +   L++    I  PHIA  S
Sbjct: 214 NQALREALLSGEDLDAVLDVWEGEPQIDLELAD-LCTIATPHIAGYS 259

Length = 381

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  103 bits (258), Expect = 2e-25
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 21/236 (8%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLT---ETTAELAASLSLAAARRIVEADEFMRAGLYD 59
           VG   VDV+AA K+GI V   P   T    + AE+A  L L   R+  E    ++A    
Sbjct: 91  VGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLG 150

Query: 60  GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR---LEKFVT 116
              P   +G+ L G+TV ++G G IG   A+ +   F + L+      ATR     +   
Sbjct: 151 E--P---IGDTLFGKTVFILGYGAIGIELAKRL-RPFGVKLL------ATRRSWTSEPED 198

Query: 117 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 176
                     +          + E   EAD++ L   L K T  ++N E L++MKK A+L
Sbjct: 199 GLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALL 258

Query: 177 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIA 230
           VN +RG ++D  A++  L+   +  + +DV   EP+  P   + +  N I+ PH+A
Sbjct: 259 VNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPF-DPDDPILKHPNVIITPHVA 313

Length = 347

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  100 bits (251), Expect = 2e-24
 Identities = 72/235 (30%), Positives = 112/235 (47%), Gaps = 23/235 (9%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           +G ++VD+ AAN  GI V    G    + AE    + L   R  V   E    G   GW 
Sbjct: 93  IGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRNYVPGHEQAIEG---GWN 149

Query: 63  PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
               V     L+G+TVG +GAGRIG    R + + F ++L+YYD ++             
Sbjct: 150 VADVVKRAYDLEGKTVGTVGAGRIGLRVLRRL-KPFDVHLLYYDRHR------------- 195

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
            L    E+ +   R + +++++ + DV++++  L   T  L NKE L+ MKK A LVN +
Sbjct: 196 -LPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVNTA 254

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 233
           RG + D  A+ E L+   +     DV+  +P  K  P    M N  + PHI+  +
Sbjct: 255 RGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHP-WRTMPNNAMTPHISGTT 308

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 99.0 bits (247), Expect = 1e-23
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 35/241 (14%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           +G ++VD+ AA+++GI V    G  + + AE    + LA  R    +      G   GW 
Sbjct: 123 IGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEG---GW- 178

Query: 63  PNLF-VGNL---LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 118
            N+    +    L+G TVG++GAGRIG A  R + + F + L Y D ++           
Sbjct: 179 -NIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPFDVKLHYTDRHR----------- 225

Query: 119 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 178
              L    EQ +      S D ++   DV+++H  L   T HL + + L+ MK+ + LVN
Sbjct: 226 ---LPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVN 282

Query: 179 CSRGPVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHIASA 232
            +RG ++D  A+V  L+   +     DV+       D P+       M    + PHI+  
Sbjct: 283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRT-----MPRNGMTPHISGT 337

Query: 233 S 233
           +
Sbjct: 338 T 338

Length = 385

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 93.4 bits (233), Expect = 4e-22
 Identities = 70/235 (29%), Positives = 99/235 (42%), Gaps = 37/235 (15%)

Query: 17  GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQT 75
           G+ + N  GV   +TAELA +L LA+ R +         G ++    P+L        + 
Sbjct: 81  GVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQARGRWEPRRTPSL------ADRR 134

Query: 76  VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTW 132
           V ++G G IG A  R                   RL  F   VT   +  +  GEQ    
Sbjct: 135 VLIVGYGSIGRAIER-------------------RLAPFEVRVTRVARTARP-GEQVHGI 174

Query: 133 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 192
                +  +L EADV+ L   L   T  L++ E LA M   A+LVN +RGPV+D  ALV 
Sbjct: 175 ---DELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALVA 231

Query: 193 HLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLAA 245
            L    + R  LDV + EP + PG  L      ++ PH+  A+         L  
Sbjct: 232 ELASGRL-RAALDVTDPEP-LPPGHPLWSAPGVLITPHVGGATPAFLPRAYALVR 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 81.9 bits (202), Expect = 5e-18
 Identities = 58/257 (22%), Positives = 119/257 (46%), Gaps = 29/257 (11%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           ++ G +++DV+   +  + + +  G  + + AE A +L LA A+ I E +  M+ G +  
Sbjct: 56  LSAGVDHIDVSGIPE-NVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQ 114

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
             P      LL  +++G++G G IG   A ++ + F MN+  Y     TR     +    
Sbjct: 115 -SPT----KLLYNKSLGILGYGGIGRRVA-LLAKAFGMNIYAY-----TR-----SYVND 158

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
            + +   +P         +++++++D + +   L   T  +IN + L+  +K   ++N +
Sbjct: 159 GISSIYMEP---------EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVA 209

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASA-SKWTREG 239
           R  V+D+  ++  L+ +       DV+ +EP +    +   N I+ PH+A   S    + 
Sbjct: 210 RADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITE--TNPDNVILSPHVAGGMSGEIMQP 267

Query: 240 MATLAALNVLGKIKGYP 256
              LA  N+    +G P
Sbjct: 268 AVALAFENIKNFFEGKP 284

Length = 303

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 79.9 bits (197), Expect = 6e-17
 Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 41/241 (17%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI------VEADEFMRAG 56
           +G +++D+ AA   G+ V    G    + AE      L   R        V + E+  AG
Sbjct: 130 IGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAG 189

Query: 57  L----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRL 111
           +    YD           L+G+TVG +GAGRIG    + + + F  NL+Y+D L     L
Sbjct: 190 IAYRAYD-----------LEGKTVGTVGAGRIGRLLLQRL-KPFNCNLLYHDRLKMDPEL 237

Query: 112 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 171
           EK   A               K    +D +L + DV+ ++  L + T  + NKER+A MK
Sbjct: 238 EKETGA---------------KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMK 282

Query: 172 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHI 229
           K  ++VN +RG ++D  A+ +      +   G DV+  +P  K  P    M N  + PHI
Sbjct: 283 KGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRY-MPNHAMTPHI 341

Query: 230 A 230
           +
Sbjct: 342 S 342

Length = 386

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 74.1 bits (183), Expect = 3e-15
 Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 37/215 (17%)

Query: 27  LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 86
           L +  AE   +  L   R +       R G+   W P          + VGV+G G +G+
Sbjct: 91  LAQGMAEYVLAAVLRLHRDMDRYAAQQRRGV---WKPLPQR--PAAERRVGVLGLGELGA 145

Query: 87  AYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 145
           A AR +   GF                  V+ + +  K + E    +     +D  L + 
Sbjct: 146 AVARRLAALGFP-----------------VSGWSRSPK-DIEGVTCFHGEEGLDAFLAQT 187

Query: 146 DV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 204
           D+ + L P+  +T   ++N E LA + + A L+N  RGP + E  L+  L    +    L
Sbjct: 188 DILVCLLPLTPETR-GILNAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVL 246

Query: 205 DVFEDEPYMKPGLSE------MKNAIVVPHIASAS 233
           DVFE EP     L             V PHIA+ +
Sbjct: 247 DVFEQEP-----LPADHPLWRHPRVTVTPHIAAIT 276

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 74.6 bits (183), Expect = 4e-15
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 28/178 (15%)

Query: 68  GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 127
           G  L  +TVG++G G +G      + E   +  +  D  +A R ++     G F      
Sbjct: 111 GFSLHDRTVGIVGVGNVGRRLQARL-EALGIKTLLCDPPRADRGDE-----GDF------ 158

Query: 128 QPVTWKRASSMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGP 183
                    S+DE+++EAD+++ H  L K     T HL +++ + ++K  AIL+N  RG 
Sbjct: 159 --------RSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGA 210

Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 241
           V+D  AL+  L +     V LDV+E EP +   L + K  I  PHIA    +T EG A
Sbjct: 211 VVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLK-KVDIGTPHIAG---YTLEGKA 264

Length = 378

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 70.1 bits (172), Expect = 7e-14
 Identities = 66/213 (30%), Positives = 89/213 (41%), Gaps = 35/213 (16%)

Query: 30  TTAELAASLSLAAARRIVEADEFMRAGLYDGWL-------PNLFVGNLLKGQTVGVIGAG 82
           T AE   +L LAA RR+ E  E  R   + G L       P   +  LL G  V + G G
Sbjct: 94  TVAEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLL-GARVLIWGFG 152

Query: 83  RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ---PVTWKRASSMD 139
            IG   A ++                T L   VT   +   + GE+   PV       + 
Sbjct: 153 SIGQRLAPLL----------------TALGARVTGVAR---SAGERAGFPVV--AEDELP 191

Query: 140 EVLREADV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 198
           E+L E DV + + P    T  H ++ E LA + K A +VN  RG  +DE ALV  L+   
Sbjct: 192 ELLPETDVLVMILPATPSTA-HALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGR 250

Query: 199 MFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIA 230
           +    LDV   EP      L +  N I+ PH A
Sbjct: 251 LGGAALDVTATEPLPASSPLWDAPNLILTPHAA 283

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 23/232 (9%)

Query: 18  IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 77
           + +    G+     AE      L  +   ++  E  +   +        V + + G+ VG
Sbjct: 79  VPLCTASGIHGPQIAEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSV-GKRVG 137

Query: 78  VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK------FVTAYGQFLKANGEQPVT 131
           ++G G IG   AR+      M +  Y        E        V   G     +G  P  
Sbjct: 138 ILGYGSIGRQTARLAQ-ALGMEVYAYTRSPRPTPESRKDDGYIVPGTGD---PDGSIPSA 193

Query: 132 W---KRASSMDEVLREA-D--VISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPV 184
           W      +S+ E LR+  D  V+SL P+   T  HL+  E    + K++  + N +RG +
Sbjct: 194 WFSGTDKASLHEFLRQDLDLLVVSL-PLTPATK-HLLGAEEFEILAKRKTFVSNIARGSL 251

Query: 185 IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASK 234
           +D  ALV  L+   +    LDV + EP +     L    N I+ PH++  ++
Sbjct: 252 VDTDALVAALESGQIRGAALDVTDPEP-LPADHPLWSAPNVIITPHVSWQTQ 302

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 65/246 (26%), Positives = 99/246 (40%), Gaps = 45/246 (18%)

Query: 25  GVLTETTAELAASLSLAAARRI----VEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 80
           GV  E  AE   +  LAAA+R+    V+  E         W         L G T+G++G
Sbjct: 93  GVAAEAIAEFVLAAILAAAKRLPEIWVKGAEQ--------WRRE--PLGSLAGSTLGIVG 142

Query: 81  AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 140
            G IG A AR  +    M ++      A R        G+     G +      A+ + E
Sbjct: 143 FGAIGQALARRAL-ALGMRVL------ALRRS------GRPSDVPGVE-----AAADLAE 184

Query: 141 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 200
           +   +D + L   L   T HLIN + LA  K    L+N +RG ++D+ AL+E L    + 
Sbjct: 185 LFARSDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRIS 244

Query: 201 RVGLDVFEDEP-------YMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIK 253
              LDV + EP       Y  P +       + PH ++ +   R  +A     N+     
Sbjct: 245 LASLDVTDPEPLPEGHPLYTHPRVR------LSPHTSAIAPDGRRNLADRFLENLARYRA 298

Query: 254 GYPIWG 259
           G P+  
Sbjct: 299 GQPLHD 304

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 29/189 (15%)

Query: 10  VNAANKYGIAVGNTPGVLTETT---AELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF 66
             A  + G+      GV        +  A  LS+    R +E  +  R G          
Sbjct: 104 TEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFIARFLEVQQPGRLGGAPD------ 157

Query: 67  VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG 126
               + G+TV V+GAG +G   A+M+  G    ++  D+      +              
Sbjct: 158 ----VAGKTVVVVGAGVVGKEAAQMLR-GLGAQVLITDINVEALEQ-------------- 198

Query: 127 EQPVTWKRASSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 185
            + +  K    ++E L EADVI     +  K    L+ +E +  MK  +++VN + G V 
Sbjct: 199 LEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILVPEELVEQMKPGSVIVNVAVGAVG 258

Query: 186 DEVALVEHL 194
              AL   L
Sbjct: 259 CVQALHTQL 267

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 61/257 (23%), Positives = 84/257 (32%), Gaps = 56/257 (21%)

Query: 7   NVDVNAANKYGIAVGNT-----PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 61
           NVD+ AA + GI V         GV+    +EL         R +              W
Sbjct: 85  NVDIAAARENGITVTGIRDYGDEGVVEYVISELI--------RLLHGFGGKQ-------W 129

Query: 62  LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
                    L G  VG+IG G  G   A  +   F  ++ YY   +    E     Y   
Sbjct: 130 KE---EPRELTGLKVGIIGLGTTGQMIADAL-SFFGADVYYYSRTRKPDAEAKGIRY--- 182

Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
                  P        ++E+L+  DVI     L K    L+ +E    +    IL N S 
Sbjct: 183 ------LP--------LNELLKTVDVICTC--LPKNVI-LLGEEEFELLGDGKILFNTSL 225

Query: 182 GPVIDEVALVEHL---KQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 238
           GP  +  AL + L     N           DE      L    N I     A    WTR+
Sbjct: 226 GPSFEVEALKKWLKASGYNIFDCDTAGALGDEE-----LLRYPNVICTNKSAG---WTRQ 277

Query: 239 GMATLAALNVLGKIKGY 255
               L+   VL  ++ Y
Sbjct: 278 AFERLSQ-KVLANLEEY 293

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 21/112 (18%), Positives = 49/112 (43%), Gaps = 15/112 (13%)

Query: 72  KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT 131
               V +IGAG +G   A++       N++ YD+ +            + ++  G   + 
Sbjct: 161 PPAKVLIIGAGVVGLGAAKIAK-KLGANVLVYDIKEEKL---------KGVETLGGSRLR 210

Query: 132 WKRASSMDEVLREADVI---SLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           + +   +++ L++ D++    L          LI +E +  MK+ A++V+ +
Sbjct: 211 YSQKEELEKELKQTDILINAILVD--GPRAPILIMEELVGPMKRGAVIVDLA 260

Alanine dehydrogenase/Transhydrogenase, such as the hexameric L-alanine dehydrogenase of Phormidium lapideum, contain 2 Rossmann fold-like domains linked by an alpha helical region. Related proteins include Saccharopine Dehydrogenase (SDH), bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme, N(5)-(carboxyethyl)ornithine synthase, and Rubrum transdehydrogenase. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyrucate to L-alanine via reductive amination. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matirx side. DI contains 2 domains with Rossmann folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with one dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than classical Rossmann domains. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
PLN02306	386	hydroxypyruvate reductase	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.97
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.87
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.78
PLN02494	477	adenosylhomocysteinase	99.67
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.57
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.51
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.51
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.42
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.4
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.38
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.37
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.3
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.3
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.28
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.25
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.25
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.16
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.12
PLN02712	667	arogenate dehydrogenase	99.11
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.11
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.09
PLN02256	304	arogenate dehydrogenase	99.06
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.04
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.04
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	98.99
PLN02858	1378	fructose-bisphosphate aldolase	98.99
PRK08655	437	prephenate dehydrogenase; Provisional	98.97
PLN02858	1378	fructose-bisphosphate aldolase	98.97
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.93
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.92
KOG0409	327	consensus Predicted dehydrogenase [General functio	98.91
PRK07417	279	arogenate dehydrogenase; Reviewed	98.91
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.9
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.87
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.87
PRK08818	370	prephenate dehydrogenase; Provisional	98.87
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.86
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.86
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.85
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.85
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.85
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.85
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.85
PRK06545	359	prephenate dehydrogenase; Validated	98.83
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.81
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.79
PLN02712	667	arogenate dehydrogenase	98.79
PRK05225	487	ketol-acid reductoisomerase; Validated	98.76
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.75
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.73
PLN02688	266	pyrroline-5-carboxylate reductase	98.73
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.72
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.7
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.69
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.67
PRK08507	275	prephenate dehydrogenase; Validated	98.66
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.65
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.64
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.64
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.62
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.61
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.6
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.6
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.59
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.59
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.58
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.57
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.57
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.57
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.57
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.56
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.54
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.53
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.51
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.5
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.5
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.5
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.49
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.49
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.49
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.48
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.46
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.45
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.39
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.38
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.34
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.33
PRK07680	273	late competence protein ComER; Validated	98.32
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.31
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.3
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.27
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.25
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.22
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.22
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.2
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.19
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.17
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.17
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.16
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.15
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.15
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.14
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.13
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.12
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.12
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.1
PLN00203	519	glutamyl-tRNA reductase	98.1
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.09
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.09
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.08
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.07
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.07
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.07
PTZ00431	260	pyrroline carboxylate reductase; Provisional	98.06
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	98.05
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.05
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.03
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.03
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	98.0
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.0
PRK06141	314	ornithine cyclodeaminase; Validated	97.99
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.99
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.98
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.97
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.93
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.9
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.88
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.88
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.87
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.86
PRK07340	304	ornithine cyclodeaminase; Validated	97.84
PRK14982	340	acyl-ACP reductase; Provisional	97.83
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.83
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.83
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.81
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.81
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.8
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.78
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.78
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.76
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.76
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.75
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.74
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	97.74
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.74
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	97.74
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.74
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.74
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.72
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.71
PRK08618	325	ornithine cyclodeaminase; Validated	97.7
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.7
PRK06823	315	ornithine cyclodeaminase; Validated	97.67
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.67
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.66
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.66
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.65
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.64
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.64
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.64
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.63
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.62
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.62
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.6
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.59
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.59
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.58
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.58
PRK06407	301	ornithine cyclodeaminase; Provisional	97.57
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.56
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.56
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.54
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.54
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.53
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.53
PRK08291	330	ectoine utilization protein EutC; Validated	97.52
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.52
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.52
PRK07589	346	ornithine cyclodeaminase; Validated	97.52
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.5
PRK06199	379	ornithine cyclodeaminase; Validated	97.5
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.49
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.47
PRK06046	326	alanine dehydrogenase; Validated	97.47
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.45
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.44
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.43
PTZ00117	319	malate dehydrogenase; Provisional	97.42
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.42
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.41
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.38
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.35
PLN02477	410	glutamate dehydrogenase	97.34
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.33
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.33
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.33
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.31
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.29
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.26
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.26
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.25
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.23
PRK09414	445	glutamate dehydrogenase; Provisional	97.21
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.18
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.16
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.15
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.14
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	97.07
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.05
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.03
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.99
COG5322	351	Predicted dehydrogenase [General function predicti	96.99
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.97
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.96
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.91
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.85
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.83
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.82
PRK14031	444	glutamate dehydrogenase; Provisional	96.81
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.81
PRK06223	307	malate dehydrogenase; Reviewed	96.8
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.8
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.8
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	96.79
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.79
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.79
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.77
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	96.76
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.73
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.69
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.69
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.68
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.65
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.64
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.61
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.6
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.59
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.58
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.57
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.55
PRK14030	445	glutamate dehydrogenase; Provisional	96.54
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.53
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.52
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.5
PRK02102	331	ornithine carbamoyltransferase; Validated	96.49
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.46
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.46
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.45
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.4
PRK11579	346	putative oxidoreductase; Provisional	96.38
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.38
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.38
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.32
PRK02255	338	putrescine carbamoyltransferase; Provisional	96.31
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	96.28
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	96.24
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.22
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.21
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.21
PRK12862	763	malic enzyme; Reviewed	96.19
PRK10637	457	cysG siroheme synthase; Provisional	96.18
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.18
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	96.17
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.15
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.15
PRK06444	197	prephenate dehydrogenase; Provisional	96.13
COG0281	432	SfcA Malic enzyme [Energy production and conversio	96.11
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.1
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.09
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.08
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.08
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.06
PRK04284	332	ornithine carbamoyltransferase; Provisional	96.02
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.01
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.99
PRK09496	453	trkA potassium transporter peripheral membrane com	95.98
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.97
PLN02527	306	aspartate carbamoyltransferase	95.96
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.95
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.95
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.94
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.93
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	95.91
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.87
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.86
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.85
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.82
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	95.75
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	95.74
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.7
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.7
PRK06270	341	homoserine dehydrogenase; Provisional	95.7
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.69
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.68
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.68
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.68
PRK12861	764	malic enzyme; Reviewed	95.67
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.65
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.65
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.64
PRK08328	231	hypothetical protein; Provisional	95.6
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.6
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	95.59
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	95.55
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.54
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.53
PRK06392	326	homoserine dehydrogenase; Provisional	95.53
PLN02342	348	ornithine carbamoyltransferase	95.52
PRK06153	393	hypothetical protein; Provisional	95.52
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.52
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.47
COG2344	211	AT-rich DNA-binding protein [General function pred	95.45
PRK08192	338	aspartate carbamoyltransferase; Provisional	95.43
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.43
PRK07806	248	short chain dehydrogenase; Provisional	95.42
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	95.4
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	95.39
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.39
PRK09496	453	trkA potassium transporter peripheral membrane com	95.34
PLN02602	350	lactate dehydrogenase	95.34
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.34
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	95.32
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	95.29
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	95.25
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.24
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.24
PRK05086	312	malate dehydrogenase; Provisional	95.21
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.17
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.15
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.14
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.02
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.0
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	94.96
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	94.94
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	94.9
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	94.86
PLN02948	577	phosphoribosylaminoimidazole carboxylase	94.86
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	94.81
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.76
PRK08223	287	hypothetical protein; Validated	94.75
PRK07411	390	hypothetical protein; Validated	94.7
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	94.7
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.68
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	94.59
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	94.58
PRK12937	245	short chain dehydrogenase; Provisional	94.57
PRK04148	134	hypothetical protein; Provisional	94.54
PRK10669	558	putative cation:proton antiport protein; Provision	94.53
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	94.53
PRK13529	563	malate dehydrogenase; Provisional	94.52
PRK06349	426	homoserine dehydrogenase; Provisional	94.45
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	94.4
COG0673	342	MviM Predicted dehydrogenases and related proteins	94.4
PRK15076	431	alpha-galactosidase; Provisional	94.39
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	94.37
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	94.35
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.34
PRK06128	300	oxidoreductase; Provisional	94.24
PRK06701	290	short chain dehydrogenase; Provisional	94.12
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	94.11
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.06
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.04
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	93.99
PLN02586	360	probable cinnamyl alcohol dehydrogenase	93.96
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	93.92
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.88
PTZ00325	321	malate dehydrogenase; Provisional	93.87
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.86
PRK14804	311	ornithine carbamoyltransferase; Provisional	93.85
PRK10206	344	putative oxidoreductase; Provisional	93.84
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	93.84
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	93.84
PLN00106	323	malate dehydrogenase	93.83
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	93.82
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	93.8
PRK07877	722	hypothetical protein; Provisional	93.76
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	93.71
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.71
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.64
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.58
PLN02178	375	cinnamyl-alcohol dehydrogenase	93.56
PLN00112	444	malate dehydrogenase (NADP); Provisional	93.53
PLN02214	342	cinnamoyl-CoA reductase	93.5
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.5
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	93.5
PRK06114	254	short chain dehydrogenase; Provisional	93.48
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.48
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.46
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	93.44
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	93.39
PRK12742	237	oxidoreductase; Provisional	93.36
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	93.3
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	93.26
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	93.26
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	93.24
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	93.03
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	93.01
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	92.99
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	92.95
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	92.94
PRK05442	326	malate dehydrogenase; Provisional	92.9
PRK06172	253	short chain dehydrogenase; Provisional	92.89
PLN03209	576	translocon at the inner envelope of chloroplast su	92.87
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	92.83
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	92.8
PLN02383	344	aspartate semialdehyde dehydrogenase	92.78
PLN02514	357	cinnamyl-alcohol dehydrogenase	92.76
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	92.73
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	92.69
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	92.69
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	92.68
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	92.64
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	92.63
PRK05866	293	short chain dehydrogenase; Provisional	92.62
PRK12747	252	short chain dehydrogenase; Provisional	92.58
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.53
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	92.51
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.49
PRK08324	681	short chain dehydrogenase; Validated	92.45
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	92.43
PLN02427	386	UDP-apiose/xylose synthase	92.42
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	92.4
PRK14851	679	hypothetical protein; Provisional	92.32
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	92.31
CHL00194	317	ycf39 Ycf39; Provisional	92.21
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.19
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	92.11
PRK07576	264	short chain dehydrogenase; Provisional	92.09
PLN02740	381	Alcohol dehydrogenase-like	92.08
PRK14805	302	ornithine carbamoyltransferase; Provisional	91.96
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	91.95
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	91.94
PRK08374	336	homoserine dehydrogenase; Provisional	91.94
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.9
PRK07523	255	gluconate 5-dehydrogenase; Provisional	91.88
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	91.87
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	91.87
PLN03129	581	NADP-dependent malic enzyme; Provisional	91.82
PRK05867	253	short chain dehydrogenase; Provisional	91.78
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	91.76
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	91.75
PRK07326	237	short chain dehydrogenase; Provisional	91.73
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	91.72
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	91.68
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	91.67
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	91.64
PRK08589	272	short chain dehydrogenase; Validated	91.62
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.54
PRK07985	294	oxidoreductase; Provisional	91.54
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	91.54
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	91.52
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	91.51
COG2910	211	Putative NADH-flavin reductase [General function p	91.46
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	91.43
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	91.37
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	91.36
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	91.36
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	91.31
PRK08628	258	short chain dehydrogenase; Provisional	91.3
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	91.23
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	91.17
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	91.16
PRK09186	256	flagellin modification protein A; Provisional	91.15
PRK06125	259	short chain dehydrogenase; Provisional	91.14
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	91.13
PRK12935	247	acetoacetyl-CoA reductase; Provisional	91.1
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	91.06
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	91.02
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.02
PTZ00317	559	NADP-dependent malic enzyme; Provisional	90.96
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	90.95
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	90.9
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	90.9
PLN02206	442	UDP-glucuronate decarboxylase	90.87
PRK07890	258	short chain dehydrogenase; Provisional	90.86
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	90.84

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=4.7e-73  Score=534.58  Aligned_cols=294  Identities=94%  Similarity=1.408  Sum_probs=260.6

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|.+|.+....|.+|+||||||||
T Consensus        93 ~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG  172 (386)
T PLN02306         93 MAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIG  172 (386)
T ss_pred             CCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEEC
Confidence            58999999999999999999999999999999999999999999999999999999998886544457899999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+.+|++++++|||+|++||++.....+.+...++..+...+..+..+....+|+|++++||+|++|+|+|++|++
T Consensus       173 ~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~  252 (386)
T PLN02306        173 AGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYH  252 (386)
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhh
Confidence            99999999999634999999999998643222111111111111111111122235899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM  240 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~~~~~  240 (294)
                      |||++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||++++|||++|||++|||+||+|.++.+++
T Consensus       253 lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e~~~~~  332 (386)
T PLN02306        253 LINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTREGM  332 (386)
T ss_pred             hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCCccCCCCCCCCCCchhhhHHHhccccccC
Q 022672          241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL  294 (294)
Q Consensus       241 ~~~~~~nl~~~~~g~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (294)
                      .+.+++|+.+|++|+++.|.+|.+++++++...||.++|||.|.+.||.+|+.+
T Consensus       333 ~~~~~~ni~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (386)
T PLN02306        333 ATLAALNVLGKLKGYPVWGDPNRVEPFLNENAPPPAASPSIVNAKALGLPVSKL  386 (386)
T ss_pred             HHHHHHHHHHHHcCCCCcccccchhhcccccCCCCcCCcceechhhhCCcccCC
Confidence            999999999999999999999988899999999999999999999999999875

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-68  Score=490.71  Aligned_cols=240  Identities=41%  Similarity=0.580  Sum_probs=221.8

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++++++||.|+|+|+.|+.+||||+++++|++.|+++.+++.+++|.|++   ..+.|.+|+|||+||||
T Consensus        73 ~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~~~~g~el~gkTvGIiG  149 (324)
T COG0111          73 AGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR---KAFRGTELAGKTVGIIG  149 (324)
T ss_pred             ccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc---cccccccccCCEEEEEC
Confidence            489999999999999999999999999999999999999999999999999999999763   33567799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+.+|+++ ++|||+|++||++.......               ..+.....+|+++|++||+|++|+|+|++|++
T Consensus       150 ~G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~---------------~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g  213 (324)
T COG0111         150 LGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG---------------VDGVVGVDSLDELLAEADILTLHLPLTPETRG  213 (324)
T ss_pred             CCHHHHHHHHHH-HhCCCeEEEECCCCchhhhc---------------cccceecccHHHHHhhCCEEEEcCCCCcchhc
Confidence            999999999996 89999999999965442111               11233457899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCcHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG  239 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t~~~~~~  239 (294)
                      |||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||++|||+|++|.+++++
T Consensus       214 ~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~  293 (324)
T COG0111         214 LINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQER  293 (324)
T ss_pred             ccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999987 7999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCC
Q 022672          240 MATLAALNVLGKIKGYPIWG  259 (294)
Q Consensus       240 ~~~~~~~nl~~~~~g~~~~~  259 (294)
                      +..++++|+.+|++|+++.+
T Consensus       294 ~~~~~~~~i~~~l~g~~~~~  313 (324)
T COG0111         294 VAEIVAENIVRYLAGGPVVN  313 (324)
T ss_pred             HHHHHHHHHHHHHcCCCCCC
Confidence            99999999999999999766

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=1.1e-66  Score=482.31  Aligned_cols=245  Identities=37%  Similarity=0.555  Sum_probs=222.3

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|..+......|.+|+|||+||||
T Consensus        73 ~g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG  152 (323)
T PRK15409         73 ISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVG  152 (323)
T ss_pred             CceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEc
Confidence            58999999999999999999999999999999999999999999999999999999986442222347899999999999


Q ss_pred             CChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcccc
Q 022672           81 AGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  159 (294)
Q Consensus        81 lG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~  159 (294)
                      +|+||+.+|+++ + +|||+|++||++.......               ..+. ...++++++++||+|++|+|+|++|+
T Consensus       153 ~G~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~---------------~~~~-~~~~l~ell~~sDvv~lh~plt~~T~  215 (323)
T PRK15409        153 MGRIGMALAQRA-HFGFNMPILYNARRHHKEAEE---------------RFNA-RYCDLDTLLQESDFVCIILPLTDETH  215 (323)
T ss_pred             ccHHHHHHHHHH-HhcCCCEEEEECCCCchhhHH---------------hcCc-EecCHHHHHHhCCEEEEeCCCChHHh
Confidence            999999999996 6 9999999999875332110               0111 23589999999999999999999999


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC-CCCccCCCCeEEccCCCCCcHHHHH
Q 022672          160 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTRE  238 (294)
Q Consensus       160 ~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~L~~~~nviiTPHia~~t~~~~~  238 (294)
                      ++|+++.|+.||||++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+||.|.+++.
T Consensus       216 ~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~  295 (323)
T PRK15409        216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRY  295 (323)
T ss_pred             hccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHH
Confidence            999999999999999999999999999999999999999999999999999986 4799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCCC
Q 022672          239 GMATLAALNVLGKIKGYPIWGNPN  262 (294)
Q Consensus       239 ~~~~~~~~nl~~~~~g~~~~~~~n  262 (294)
                      ++...+++|+.+|++|+++.+.+|
T Consensus       296 ~~~~~~~~ni~~~~~g~~~~~~vn  319 (323)
T PRK15409        296 NMAACAVDNLIDALQGKVEKNCVN  319 (323)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccC
Confidence            999999999999999998887766

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=2e-66  Score=478.81  Aligned_cols=245  Identities=44%  Similarity=0.625  Sum_probs=222.8

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCC-CCcccCcccCCCEEEEE
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL-PNLFVGNLLKGQTVGVI   79 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~-~~~~~g~~l~gktvGII   79 (294)
                      +|+||||||+++|+++||.|+|+|++++++||||+++++|++.|++.++++++|+|.|..|. .....|.+++|||+|||
T Consensus        73 ~~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIi  152 (324)
T COG1052          73 RSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGII  152 (324)
T ss_pred             eccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEE
Confidence            48999999999999999999999999999999999999999999999999999999998652 33356789999999999


Q ss_pred             cCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcccc
Q 022672           80 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  159 (294)
Q Consensus        80 GlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~  159 (294)
                      |+|+||+++|+++ ++|||+|++||+++....+.               ..+..+ .+++|++++||+|++|||+|++|+
T Consensus       153 G~GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~---------------~~~~~y-~~l~ell~~sDii~l~~Plt~~T~  215 (324)
T COG1052         153 GLGRIGQAVARRL-KGFGMKVLYYDRSPNPEAEK---------------ELGARY-VDLDELLAESDIISLHCPLTPETR  215 (324)
T ss_pred             CCCHHHHHHHHHH-hcCCCEEEEECCCCChHHHh---------------hcCcee-ccHHHHHHhCCEEEEeCCCChHHh
Confidence            9999999999997 69999999999987522111               111223 359999999999999999999999


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC-CCCccCCCC---eEEccCCCCCcHH
Q 022672          160 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKN---AIVVPHIASASKW  235 (294)
Q Consensus       160 ~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~L~~~~n---viiTPHia~~t~~  235 (294)
                      |+||++.|++||+|++|||+|||++||++||++||++|+|+||+||||+.||.+ ++||+.++|   |++|||+|+.|.+
T Consensus       216 hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~e  295 (324)
T COG1052         216 HLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEE  295 (324)
T ss_pred             hhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHH
Confidence            999999999999999999999999999999999999999999999999999995 678887777   9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 022672          236 TREGMATLAALNVLGKIKGYPIWGNPN  262 (294)
Q Consensus       236 ~~~~~~~~~~~nl~~~~~g~~~~~~~n  262 (294)
                      ++.+|...+++|+.+|++|++..+.+|
T Consensus       296 a~~~m~~~~~~nl~~~~~g~~~~~~v~  322 (324)
T COG1052         296 ARKAMAELALENLEAFFDGGVPPNEVN  322 (324)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            999999999999999999998877765

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=4.4e-65  Score=471.16  Aligned_cols=235  Identities=33%  Similarity=0.430  Sum_probs=215.9

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCC---cccCcccCCCEEE
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVG   77 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~---~~~g~~l~gktvG   77 (294)
                      +|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|..|...   .+.+.+|+|||+|
T Consensus        73 ~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvg  152 (317)
T PRK06487         73 AATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLG  152 (317)
T ss_pred             cCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEE
Confidence            4899999999999999999999999999999999999999999999999999999998765321   1234689999999


Q ss_pred             EEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc
Q 022672           78 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  157 (294)
Q Consensus        78 IIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~  157 (294)
                      |||+|.||+.+|+++ ++|||+|++||++....                  .   ....+|++++++||+|++|+|+|++
T Consensus       153 IiG~G~IG~~vA~~l-~~fgm~V~~~~~~~~~~------------------~---~~~~~l~ell~~sDiv~l~lPlt~~  210 (317)
T PRK06487        153 LLGHGELGGAVARLA-EAFGMRVLIGQLPGRPA------------------R---PDRLPLDELLPQVDALTLHCPLTEH  210 (317)
T ss_pred             EECCCHHHHHHHHHH-hhCCCEEEEECCCCCcc------------------c---ccccCHHHHHHhCCEEEECCCCChH
Confidence            999999999999997 79999999999863210                  0   1125899999999999999999999


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccC--CCCeEEccCCCCCcH
Q 022672          158 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSE--MKNAIVVPHIASASK  234 (294)
Q Consensus       158 t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~--~~nviiTPHia~~t~  234 (294)
                      |+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||.  +|||++|||+||+|.
T Consensus       211 T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~  290 (317)
T PRK06487        211 TRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSR  290 (317)
T ss_pred             HhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCH
Confidence            999999999999999999999999999999999999999999999999999999975 79995  899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCC
Q 022672          235 WTREGMATLAALNVLGKIKGYPI  257 (294)
Q Consensus       235 ~~~~~~~~~~~~nl~~~~~g~~~  257 (294)
                      ++.+++...+++|+.+|++|+|+
T Consensus       291 e~~~~~~~~~~~ni~~~~~g~~~  313 (317)
T PRK06487        291 EARQRIVGQLAENARAFFAGKPL  313 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999876

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=9.8e-65  Score=467.67  Aligned_cols=234  Identities=32%  Similarity=0.491  Sum_probs=212.7

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCc---ccCcccCCCEEE
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVG   77 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~---~~g~~l~gktvG   77 (294)
                      .|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|..+....   ..+.+|+|||+|
T Consensus        70 ~~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvG  149 (311)
T PRK08410         70 TATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWG  149 (311)
T ss_pred             cccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEE
Confidence            48999999999999999999999999999999999999999999999999999999986432111   124689999999


Q ss_pred             EEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc
Q 022672           78 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  157 (294)
Q Consensus        78 IIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~  157 (294)
                      |||+|+||+.+|+++ ++|||+|++||++.....                  .++ ...++++++++||+|++|+|+|++
T Consensus       150 IiG~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~~------------------~~~-~~~~l~ell~~sDvv~lh~Plt~~  209 (311)
T PRK08410        150 IIGLGTIGKRVAKIA-QAFGAKVVYYSTSGKNKN------------------EEY-ERVSLEELLKTSDIISIHAPLNEK  209 (311)
T ss_pred             EECCCHHHHHHHHHH-hhcCCEEEEECCCccccc------------------cCc-eeecHHHHhhcCCEEEEeCCCCch
Confidence            999999999999996 799999999998643210                  011 235899999999999999999999


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCC---CCeEEccCCCCCc
Q 022672          158 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEM---KNAIVVPHIASAS  233 (294)
Q Consensus       158 t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~---~nviiTPHia~~t  233 (294)
                      |+++||++.|++||||++|||+|||++||++||++||++|+|+ |+||||++||++. +|||++   |||++|||+|++|
T Consensus       210 T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t  288 (311)
T PRK08410        210 TKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWAS  288 (311)
T ss_pred             hhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCC
Confidence            9999999999999999999999999999999999999999999 9999999999975 799986   8999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Q 022672          234 KWTREGMATLAALNVLGKIKGY  255 (294)
Q Consensus       234 ~~~~~~~~~~~~~nl~~~~~g~  255 (294)
                      .++.+++...+++|+.+|++|+
T Consensus       289 ~e~~~~~~~~~~~nl~~~~~g~  310 (311)
T PRK08410        289 KEARKTLIEKVKENIKDFLEGG  310 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999986

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=2.2e-64  Score=494.63  Aligned_cols=272  Identities=38%  Similarity=0.542  Sum_probs=246.5

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|.++   .+.|.+|+||||||||
T Consensus        69 ~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG  145 (525)
T TIGR01327        69 AGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK---AFMGTELYGKTLGVIG  145 (525)
T ss_pred             CCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc---ccCccccCCCEEEEEC
Confidence            4899999999999999999999999999999999999999999999999999999987542   2357899999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|++| ++|||+|++||++.......               ..+.....+++|++++||+|++|+|+|++|++
T Consensus       146 ~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~  209 (525)
T TIGR01327       146 LGRIGSIVAKRA-KAFGMKVLAYDPYISPERAE---------------QLGVELVDDLDELLARADFITVHTPLTPETRG  209 (525)
T ss_pred             CCHHHHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEEcCCHHHHHhhCCEEEEccCCChhhcc
Confidence            999999999997 79999999999864321110               01122335899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM  240 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~~~~~  240 (294)
                      +|+++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||++++|||++|||++|||+|++|.++++++
T Consensus       210 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~  289 (525)
T TIGR01327       210 LIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENV  289 (525)
T ss_pred             CcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCCccCCCCCCCCCCchhhhHHHhccccccC
Q 022672          241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL  294 (294)
Q Consensus       241 ~~~~~~nl~~~~~g~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (294)
                      ...+++|+.+|++|+++.+.+|.  |.+ .+...+...||+.++++||.+..||
T Consensus       290 ~~~~~~ni~~~~~g~~~~~~vn~--~~~-~~~~~~~~~~~~~la~riG~~a~ql  340 (525)
T TIGR01327       290 ATQVAEQVLDALKGLPVPNAVNA--PGI-DADVMEKLKPYLDLAEKLGKLAGQL  340 (525)
T ss_pred             HHHHHHHHHHHHcCCCCCceeeC--CCC-CchhhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999888  444 5667778999999999999988764

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=7.8e-64  Score=465.69  Aligned_cols=246  Identities=48%  Similarity=0.730  Sum_probs=223.5

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCC----CCCCcccCcccCCCEE
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG----WLPNLFVGNLLKGQTV   76 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~----w~~~~~~g~~l~gktv   76 (294)
                      +|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|..    |......|.+|+||||
T Consensus        74 ~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktv  153 (333)
T PRK13243         74 YAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTI  153 (333)
T ss_pred             cCccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEE
Confidence            589999999999999999999999999999999999999999999999999999999864    2222235679999999


Q ss_pred             EEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCc
Q 022672           77 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  156 (294)
Q Consensus        77 GIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~  156 (294)
                      ||||+|.||+.+|++| ++|||+|++||++.......          .     .+. ...++++++++||+|++|+|+|+
T Consensus       154 gIiG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~----------~-----~~~-~~~~l~ell~~aDiV~l~lP~t~  216 (333)
T PRK13243        154 GIIGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK----------E-----LGA-EYRPLEELLRESDFVSLHVPLTK  216 (333)
T ss_pred             EEECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH----------H-----cCC-EecCHHHHHhhCCEEEEeCCCCh
Confidence            9999999999999997 79999999999876432110          0     011 23589999999999999999999


Q ss_pred             cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHH
Q 022672          157 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT  236 (294)
Q Consensus       157 ~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~  236 (294)
                      +|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||++++|||++|||++|||+||+|.++
T Consensus       217 ~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~  296 (333)
T PRK13243        217 ETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEA  296 (333)
T ss_pred             HHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          237 REGMATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       237 ~~~~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      ..++.+.+++|+.+|++|+++.+.+|.
T Consensus       297 ~~~~~~~~~~ni~~~~~g~~~~~~v~~  323 (333)
T PRK13243        297 REGMAELVAENLIAFKRGEVPPTLVNR  323 (333)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccCH
Confidence            999999999999999999998877764

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-63  Score=461.19  Aligned_cols=234  Identities=31%  Similarity=0.423  Sum_probs=212.7

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCC---cccCcccCCCEEE
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVG   77 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~---~~~g~~l~gktvG   77 (294)
                      .|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.++++.|..+...   ...+.+|+|||+|
T Consensus        72 ~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvg  151 (314)
T PRK06932         72 TATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLG  151 (314)
T ss_pred             ecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEE
Confidence            4799999999999999999999999999999999999999999999999999999998654211   1234689999999


Q ss_pred             EEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc
Q 022672           78 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  157 (294)
Q Consensus        78 IIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~  157 (294)
                      |||+|.||+.+|+++ ++|||+|++||+.....                   .. ....+|+|++++||+|++|+|+|++
T Consensus       152 IiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~-------------------~~-~~~~~l~ell~~sDiv~l~~Plt~~  210 (314)
T PRK06932        152 VFGKGCLGTEVGRLA-QALGMKVLYAEHKGASV-------------------CR-EGYTPFEEVLKQADIVTLHCPLTET  210 (314)
T ss_pred             EECCCHHHHHHHHHH-hcCCCEEEEECCCcccc-------------------cc-cccCCHHHHHHhCCEEEEcCCCChH
Confidence            999999999999997 89999999999753210                   00 1135899999999999999999999


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCcc----CCCCeEEccCCCCC
Q 022672          158 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLS----EMKNAIVVPHIASA  232 (294)
Q Consensus       158 t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~----~~~nviiTPHia~~  232 (294)
                      |+++||++.|++||||++|||+|||++||++||+++|++|+|+||+||||++||++. +|||    ++|||++|||+|++
T Consensus       211 T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~  290 (314)
T PRK06932        211 TQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWA  290 (314)
T ss_pred             HhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccC
Confidence            999999999999999999999999999999999999999999999999999999874 7898    59999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCC
Q 022672          233 SKWTREGMATLAALNVLGKIKGY  255 (294)
Q Consensus       233 t~~~~~~~~~~~~~nl~~~~~g~  255 (294)
                      |.++.+++...+++|+.+|++|+
T Consensus       291 t~e~~~~~~~~~~~ni~~~~~~g  313 (314)
T PRK06932        291 SDSAVTTLVNKVAQNIEEFVQQG  313 (314)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999876

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-63  Score=473.79  Aligned_cols=242  Identities=31%  Similarity=0.415  Sum_probs=222.8

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|..+.   ..+.+|.|||+||||
T Consensus        82 ~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~---~~~~~L~gktvGIiG  158 (409)
T PRK11790         82 FCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA---AGSFEVRGKTLGIVG  158 (409)
T ss_pred             CceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc---cCcccCCCCEEEEEC
Confidence            58999999999999999999999999999999999999999999999999999999976432   346799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|+||+.+|+++ ++|||+|++||++.....                  .......+++|++++||+|++|+|+|++|++
T Consensus       159 ~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~~------------------~~~~~~~~l~ell~~sDiVslh~Plt~~T~~  219 (409)
T PRK11790        159 YGHIGTQLSVLA-ESLGMRVYFYDIEDKLPL------------------GNARQVGSLEELLAQSDVVSLHVPETPSTKN  219 (409)
T ss_pred             CCHHHHHHHHHH-HHCCCEEEEECCCccccc------------------CCceecCCHHHHHhhCCEEEEcCCCChHHhh
Confidence            999999999997 799999999998642110                  0112345899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-----CCccCCCCeEEccCCCCCcHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIASASKW  235 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-----~~L~~~~nviiTPHia~~t~~  235 (294)
                      +|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||++.     +|||++|||++|||+||+|.+
T Consensus       220 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~e  299 (409)
T PRK11790        220 MIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQE  299 (409)
T ss_pred             ccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHH
Confidence            999999999999999999999999999999999999999999999999999864     589999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 022672          236 TREGMATLAALNVLGKIKGYPIWGNPNQV  264 (294)
Q Consensus       236 ~~~~~~~~~~~nl~~~~~g~~~~~~~n~~  264 (294)
                      +.+++.+.+++|+.+|++|+++.+.+|..
T Consensus       300 a~~~~~~~~~~nl~~~~~~~~~~~~vn~~  328 (409)
T PRK11790        300 AQENIGLEVAGKLVKYSDNGSTLSAVNFP  328 (409)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCcceecc
Confidence            99999999999999999999999999874

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-63  Score=488.34  Aligned_cols=271  Identities=37%  Similarity=0.524  Sum_probs=247.1

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.++   .+.|.+|.||||||||
T Consensus        71 ~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG  147 (526)
T PRK13581         71 AGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK---KFMGVELYGKTLGIIG  147 (526)
T ss_pred             CCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc---CccccccCCCEEEEEC
Confidence            4899999999999999999999999999999999999999999999999999999997643   2357799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+.+|++| ++|||+|++||++.......               ..+... .+++|++++||+|++|+|+|++|++
T Consensus       148 ~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~  210 (526)
T PRK13581        148 LGRIGSEVAKRA-KAFGMKVIAYDPYISPERAA---------------QLGVEL-VSLDELLARADFITLHTPLTPETRG  210 (526)
T ss_pred             CCHHHHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEE-EcHHHHHhhCCEEEEccCCChHhhc
Confidence            999999999997 79999999999865321100               011222 3899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM  240 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~~~~~  240 (294)
                      +++++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||++++|||++|||++|||+|++|.++++++
T Consensus       211 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~  290 (526)
T PRK13581        211 LIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENV  290 (526)
T ss_pred             CcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCCccCCCCCCCCCCchhhhHHHhccccccC
Q 022672          241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL  294 (294)
Q Consensus       241 ~~~~~~nl~~~~~g~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (294)
                      .+.+++|+.+|++|+++.+.+|.  |.+ .+...|..+||+.++..+|.+..||
T Consensus       291 ~~~~~~ni~~~~~g~~~~~~vn~--~~~-~~~~~~~~~~~~~la~riG~~a~ql  341 (526)
T PRK13581        291 AIQVAEQVIDALRGGPVPNAVNL--PSI-TAEEAEKLKPYLDLAEKLGSLAAQL  341 (526)
T ss_pred             HHHHHHHHHHHHcCCCcCceeeC--CCC-chhhhHHhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988  555 5888899999999999999987764

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=7.6e-63  Score=464.31  Aligned_cols=249  Identities=27%  Similarity=0.323  Sum_probs=224.2

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|++++++.+||||++++||++.|++..+++.+++|.|..+.. ...+.+|+||||||||
T Consensus       121 ~g~G~D~id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~-~~~~~~L~gktVGIvG  199 (385)
T PRK07574        121 AGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADC-VSRSYDLEGMTVGIVG  199 (385)
T ss_pred             CCcccccccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc-cccceecCCCEEEEEC
Confidence            489999999999999999999999999999999999999999999999999999999864321 1245789999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+.+|++| ++|||+|++||++.......              ...+.....+++|++++||+|++|+|+|++|++
T Consensus       200 ~G~IG~~vA~~l-~~fG~~V~~~dr~~~~~~~~--------------~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~  264 (385)
T PRK07574        200 AGRIGLAVLRRL-KPFDVKLHYTDRHRLPEEVE--------------QELGLTYHVSFDSLVSVCDVVTIHCPLHPETEH  264 (385)
T ss_pred             CCHHHHHHHHHH-HhCCCEEEEECCCCCchhhH--------------hhcCceecCCHHHHhhcCCEEEEcCCCCHHHHH
Confidence            999999999997 79999999999876321100              001123346899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCcHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG  239 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t~~~~~~  239 (294)
                      +|+++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+||+|.+++++
T Consensus       265 li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~  344 (385)
T PRK07574        265 LFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQAR  344 (385)
T ss_pred             HhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999975 7999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCC
Q 022672          240 MATLAALNVLGKIKGYPIWGNPNQVE  265 (294)
Q Consensus       240 ~~~~~~~nl~~~~~g~~~~~~~n~~~  265 (294)
                      +.+.+++|+++|++|+++.|....|+
T Consensus       345 ~~~~~~~ni~~~~~G~~~~~~~~~~~  370 (385)
T PRK07574        345 YAAGTREILECFFEGRPIRDEYLIVD  370 (385)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCceEec
Confidence            99999999999999999988876653

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=3.9e-62  Score=459.21  Aligned_cols=243  Identities=26%  Similarity=0.319  Sum_probs=218.5

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|++|+++.+||||++++||++.|++..+++.+++|.|... .....+.+|.||||||||
T Consensus       128 ~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~-~~~~~~~~L~gktVGIVG  206 (386)
T PLN03139        128 AGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVA-GIAYRAYDLEGKTVGTVG  206 (386)
T ss_pred             CCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccc-cccCCCcCCCCCEEEEEe
Confidence            5899999999999999999999999999999999999999999999999999999997531 112346789999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|+||+.+|++| ++|||+|++||++.......              ...+.....++++++++||+|++|+|+|++|++
T Consensus       207 ~G~IG~~vA~~L-~afG~~V~~~d~~~~~~~~~--------------~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~  271 (386)
T PLN03139        207 AGRIGRLLLQRL-KPFNCNLLYHDRLKMDPELE--------------KETGAKFEEDLDAMLPKCDVVVINTPLTEKTRG  271 (386)
T ss_pred             ecHHHHHHHHHH-HHCCCEEEEECCCCcchhhH--------------hhcCceecCCHHHHHhhCCEEEEeCCCCHHHHH
Confidence            999999999997 79999999999875321100              011122346899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCcHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG  239 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t~~~~~~  239 (294)
                      +|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||+|. +|||++|||++|||+||.|.+++++
T Consensus       272 li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r  351 (386)
T PLN03139        272 MFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLR  351 (386)
T ss_pred             HhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999975 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCC
Q 022672          240 MATLAALNVLGKIKGYPIWG  259 (294)
Q Consensus       240 ~~~~~~~nl~~~~~g~~~~~  259 (294)
                      +.+.+++|+.+|++|+++..
T Consensus       352 ~~~~~~~nl~~~~~G~~~~~  371 (386)
T PLN03139        352 YAAGVKDMLDRYFKGEDFPA  371 (386)
T ss_pred             HHHHHHHHHHHHHcCCCCCC
Confidence            99999999999999997543

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=2.5e-61  Score=450.83  Aligned_cols=250  Identities=28%  Similarity=0.350  Sum_probs=216.4

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCC---CcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEE
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG   77 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvG   77 (294)
                      .|+|+|+||+++|.++||.|+|+|++   ++.+||||+++++|++.|+++.+++.++++.|..     ..+.+|.|||+|
T Consensus        89 ~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~gktvG  163 (347)
T PLN02928         89 FGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE-----PIGDTLFGKTVF  163 (347)
T ss_pred             CCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc-----ccccCCCCCEEE
Confidence            47999999999999999999999986   7899999999999999999999999999997642     245789999999


Q ss_pred             EEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhh-hhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCc
Q 022672           78 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  156 (294)
Q Consensus        78 IIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~  156 (294)
                      |||+|.||+.+|++| ++|||+|++||++......... .+. .......  . ......++++++++||+|++|+|+|+
T Consensus       164 IiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~~-~~~~~~~~~~~--~-~~~~~~~L~ell~~aDiVvl~lPlt~  238 (347)
T PLN02928        164 ILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDGL-LIPNGDVDDLV--D-EKGGHEDIYEFAGEADIVVLCCTLTK  238 (347)
T ss_pred             EECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhhh-ccccccccccc--c-ccCcccCHHHHHhhCCEEEECCCCCh
Confidence            999999999999997 7999999999987432111000 000 0000000  0 00134689999999999999999999


Q ss_pred             cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCcHH
Q 022672          157 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKW  235 (294)
Q Consensus       157 ~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t~~  235 (294)
                      +|+++|+++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+|++|.+
T Consensus       239 ~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~  318 (347)
T PLN02928        239 ETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEY  318 (347)
T ss_pred             HhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHH
Confidence            9999999999999999999999999999999999999999999999999999999864 799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCC
Q 022672          236 TREGMATLAALNVLGKIKGYPIWGN  260 (294)
Q Consensus       236 ~~~~~~~~~~~nl~~~~~g~~~~~~  260 (294)
                      +.+++.+.+++|+.+|++|+|+.+.
T Consensus       319 ~~~~~~~~~~~nl~~~~~g~~~~~~  343 (347)
T PLN02928        319 SYRSMGKIVGDAALQLHAGRPLTGI  343 (347)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCce
Confidence            9999999999999999999987654

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-62  Score=439.03  Aligned_cols=269  Identities=35%  Similarity=0.487  Sum_probs=243.6

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      .|+|+||+|+++|.++||.|.|+|.+|+.++||+++++++++.|+++++...+++|+|.   +..+.|.+|+|||+||+|
T Consensus        77 ag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wn---r~~~~G~el~GKTLgvlG  153 (406)
T KOG0068|consen   77 AGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWN---RVKYLGWELRGKTLGVLG  153 (406)
T ss_pred             cccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCcee---ecceeeeEEeccEEEEee
Confidence            47999999999999999999999999999999999999999999999999999999865   455688999999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|+||+.+|+++ +++||+|++||+.......+          .     .+. ...+++|+++.||||++|+|+||+|++
T Consensus       154 ~GrIGseVA~r~-k~~gm~vI~~dpi~~~~~~~----------a-----~gv-q~vsl~Eil~~ADFitlH~PLtP~T~~  216 (406)
T KOG0068|consen  154 LGRIGSEVAVRA-KAMGMHVIGYDPITPMALAE----------A-----FGV-QLVSLEEILPKADFITLHVPLTPSTEK  216 (406)
T ss_pred             cccchHHHHHHH-HhcCceEEeecCCCchHHHH----------h-----ccc-eeeeHHHHHhhcCEEEEccCCCcchhh
Confidence            999999999996 89999999999886543211          0     112 246999999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC---CCCccCCCCeEEccCCCCCcHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIVVPHIASASKWTR  237 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~---~~~L~~~~nviiTPHia~~t~~~~  237 (294)
                      |+|++.|+.||+|..+||++||++||++||++||++|+++||++|||+.||..   .+.|.++|||+.|||+|++|.|++
T Consensus       217 lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq  296 (406)
T KOG0068|consen  217 LLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQ  296 (406)
T ss_pred             ccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHH
Confidence            99999999999999999999999999999999999999999999999999986   467999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCCCCCCCCchhhhHHHhcccccc
Q 022672          238 EGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSR  293 (294)
Q Consensus       238 ~~~~~~~~~nl~~~~~g~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (294)
                      .+.+..+++++.+|.+| .....+|.  |.| ...+-+...||+.++++||..|-+
T Consensus       297 ~~iaievaea~~~~~~~-~~~g~Vna--~~v-~~~~l~~~~~~~~~a~~l~r~~~~  348 (406)
T KOG0068|consen  297 SRIAIEVAEAVSDYING-NSAGSVNA--PEV-ALESLTELKPNIVLAEKLGRLVPG  348 (406)
T ss_pred             HHHHHHHHHHHHHHhcc-Cccceech--hhh-hhhhhhccCchhHHHHHHhhhhHH
Confidence            99999999999999999 66667777  444 567788899999999999987643

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=4.4e-60  Score=432.79  Aligned_cols=245  Identities=42%  Similarity=0.619  Sum_probs=224.9

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|++|||+|+|+|+.++.+|||++++++|.+.|++.++++++++|.| .|......|..+.||||||+|
T Consensus        91 ~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG  169 (336)
T KOG0069|consen   91 MSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILG  169 (336)
T ss_pred             eecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEec
Confidence            5899999999999999999999999999999999999999999999999999999999 677767778899999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|+||+.+|++| ++||+.+.++.++.....+. .. +       .      ....++++++.+||+|++|||+|++|+|
T Consensus       170 ~G~IG~~ia~rL-~~Fg~~i~y~~r~~~~~~~~-~~-~-------~------~~~~d~~~~~~~sD~ivv~~pLt~~T~~  233 (336)
T KOG0069|consen  170 LGRIGKAIAKRL-KPFGCVILYHSRTQLPPEEA-YE-Y-------Y------AEFVDIEELLANSDVIVVNCPLTKETRH  233 (336)
T ss_pred             CcHHHHHHHHhh-hhccceeeeecccCCchhhH-HH-h-------c------ccccCHHHHHhhCCEEEEecCCCHHHHH
Confidence            999999999998 78998888888765432211 11 0       1      1146899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM  240 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~~~~~  240 (294)
                      +||++.|.+||+|++|||++||.++|++++++||++|+|.+|+||||++||.+++||+.++|+++|||+|+.|.+++++|
T Consensus       234 liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~~~m  313 (336)
T KOG0069|consen  234 LINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLETREKM  313 (336)
T ss_pred             HhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999966789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCC
Q 022672          241 ATLAALNVLGKIKGYPIWGNPN  262 (294)
Q Consensus       241 ~~~~~~nl~~~~~g~~~~~~~n  262 (294)
                      +..++.|+.++++|+|+...++
T Consensus       314 ~~~v~~n~~~~~~g~~~~~~~~  335 (336)
T KOG0069|consen  314 AEIVLNNLLAFFSGKPLLTPVL  335 (336)
T ss_pred             HHHHHHHHHHHHccCCCCCcCC
Confidence            9999999999999999877653

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-59  Score=436.69  Aligned_cols=241  Identities=31%  Similarity=0.488  Sum_probs=219.3

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+|+||+++|+++||.|+|+||+++++||||+++++|++.|+++.+++.+++|.|. |... ..+.+|+|++|||||
T Consensus        76 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG  153 (330)
T PRK12480         76 RTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIG  153 (330)
T ss_pred             cccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEEC
Confidence            48999999999999999999999999999999999999999999999999999999874 6432 346799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|++| ++||++|++||++...... +                 .....++++++++||+|++|+|++++|++
T Consensus       154 ~G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~~-~-----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~  214 (330)
T PRK12480        154 TGRIGAATAKIY-AGFGATITAYDAYPNKDLD-F-----------------LTYKDSVKEAIKDADIISLHVPANKESYH  214 (330)
T ss_pred             CCHHHHHHHHHH-HhCCCEEEEEeCChhHhhh-h-----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHH
Confidence            999999999997 7999999999987643211 0                 01235899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC----------C----CCccCCCCeEEc
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVV  226 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~----------~----~~L~~~~nviiT  226 (294)
                      +++++.|+.||+|++|||+|||.+||++||+++|++|+|+||+||||++||++          +    +|||++|||++|
T Consensus       215 li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilT  294 (330)
T PRK12480        215 LFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVT  294 (330)
T ss_pred             HHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEEC
Confidence            99999999999999999999999999999999999999999999999999962          1    269999999999


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 022672          227 PHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  262 (294)
Q Consensus       227 PHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~~n  262 (294)
                      ||+|++|.++.+++.+.+++|+.+|++|+...+.+|
T Consensus       295 PHia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~  330 (330)
T PRK12480        295 PHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN  330 (330)
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence            999999999999999999999999999999877765

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=3.3e-58  Score=427.95  Aligned_cols=243  Identities=25%  Similarity=0.427  Sum_probs=219.5

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      .|+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|++...++.++++.|. |... ..+.+|+|++|||||
T Consensus        76 ~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~-~~~~-~~~~~l~g~~VgIIG  153 (332)
T PRK08605         76 RSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR-WEPP-ILSRSIKDLKVAVIG  153 (332)
T ss_pred             cccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc-cccc-cccceeCCCEEEEEC
Confidence            48999999999999999999999999999999999999999999999999999999884 7542 346799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|++|+++||++|++||++.......                 ......++++++++||+|++|+|++++|++
T Consensus       154 ~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~-----------------~~~~~~~l~ell~~aDvIvl~lP~t~~t~~  216 (332)
T PRK08605        154 TGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT-----------------YVDYKDTIEEAVEGADIVTLHMPATKYNHY  216 (332)
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEECCCccHhHHh-----------------hccccCCHHHHHHhCCEEEEeCCCCcchhh
Confidence            999999999997458999999999876432111                 012235899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC--CCC-C-----------CccCCCCeEEc
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMK-P-----------GLSEMKNAIVV  226 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP--~~~-~-----------~L~~~~nviiT  226 (294)
                      +++++.++.||+|++|||+|||.++|+++|+++|++|+|+||+||||+.||  +|. +           +||++|||++|
T Consensus       217 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilT  296 (332)
T PRK08605        217 LFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILT  296 (332)
T ss_pred             hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEEC
Confidence            999999999999999999999999999999999999999999999999998  232 2           49999999999


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 022672          227 PHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  262 (294)
Q Consensus       227 PHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~~n  262 (294)
                      ||+|++|.++.+++...+++|+.+|++|++..+.+|
T Consensus       297 PHia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~~~  332 (332)
T PRK08605        297 PHIAFYTDAAVKNLIVDALDATLEVLQTGTTRLRVN  332 (332)
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            999999999999999999999999999999887765

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=4.7e-58  Score=422.86  Aligned_cols=239  Identities=19%  Similarity=0.237  Sum_probs=209.9

Q ss_pred             CccccCcccHHH-----HHhCCcEEEeCCC-CCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCC
Q 022672            1 MAVGYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ   74 (294)
Q Consensus         1 ~g~G~d~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gk   74 (294)
                      +|+|+|++|.+.     +..+||.|+|+++ .++.+||||+++++|++.|+++.+.+.++++.|..+     .+.+++||
T Consensus        63 ~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~-----~~~~l~g~  137 (312)
T PRK15469         63 LGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL-----PEYHREDF  137 (312)
T ss_pred             cccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC-----CCCCcCCC
Confidence            489999998332     3458999999874 689999999999999999999999999999987532     23579999


Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  154 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl  154 (294)
                      ||||||+|.||+.+|++| ++|||+|++||++.+...              +.  ..+....++++++++||+|++|+|+
T Consensus       138 tvgIvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~--------------~~--~~~~~~~~l~e~l~~aDvvv~~lPl  200 (312)
T PRK15469        138 TIGILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP--------------GV--QSFAGREELSAFLSQTRVLINLLPN  200 (312)
T ss_pred             EEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC--------------Cc--eeecccccHHHHHhcCCEEEECCCC
Confidence            999999999999999997 799999999998653210              00  0011235899999999999999999


Q ss_pred             CccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCc
Q 022672          155 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASAS  233 (294)
Q Consensus       155 t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t  233 (294)
                      |++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||+|. +|||++|||++|||+|+.|
T Consensus       201 t~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t  280 (312)
T PRK15469        201 TPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVT  280 (312)
T ss_pred             CHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999975 7999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          234 KWTREGMATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       234 ~~~~~~~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      .+.  ++...+.+|+++|++|+++.|.+|.
T Consensus       281 ~~~--~~~~~~~~n~~~~~~g~~~~~~V~~  308 (312)
T PRK15469        281 RPA--EAVEYISRTIAQLEKGERVCGQVDR  308 (312)
T ss_pred             CHH--HHHHHHHHHHHHHHcCCCCcccCCc
Confidence            863  5889999999999999998887764

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-57  Score=417.27  Aligned_cols=234  Identities=24%  Similarity=0.354  Sum_probs=208.5

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      .|+|+|+||+++|+++||.++|. |.++.+||||+++++|++.|+++.+++.+++|.|..+     .+.+|+||||||||
T Consensus        56 ~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~-----~~~~L~gktvgIiG  129 (303)
T PRK06436         56 LSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS-----PTKLLYNKSLGILG  129 (303)
T ss_pred             CCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC-----CCCCCCCCEEEEEC
Confidence            48999999999999998887774 8899999999999999999999999999999987642     34689999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|+++ ++|||+|++||++....               +   .. ....++++++++||+|++|+|+|++|++
T Consensus       130 ~G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~---~~-~~~~~l~ell~~aDiv~~~lp~t~~T~~  189 (303)
T PRK06436        130 YGGIGRRVALLA-KAFGMNIYAYTRSYVND---------------G---IS-SIYMEPEDIMKKSDFVLISLPLTDETRG  189 (303)
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCCccc---------------C---cc-cccCCHHHHHhhCCEEEECCCCCchhhc
Confidence            999999999986 79999999999874320               0   00 1135899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCC-CCcHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA-SASKWTREG  239 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia-~~t~~~~~~  239 (294)
                      +|+++.|+.||+|++|||+|||+++|++||+++|++|++.||+||||++||++++.  .+|||++|||++ +.|.++.++
T Consensus       190 li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g~~t~e~~~~  267 (303)
T PRK06436        190 MINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAGGMSGEIMQP  267 (303)
T ss_pred             CcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccccccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987542  689999999986 488999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          240 MATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       240 ~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      +...+++|+.+|++|++ .|.+|.
T Consensus       268 ~~~~~~~ni~~~~~g~~-~~~V~~  290 (303)
T PRK06436        268 AVALAFENIKNFFEGKP-KNIVRK  290 (303)
T ss_pred             HHHHHHHHHHHHHcCCC-CceEch
Confidence            99999999999999987 455543

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=3.3e-55  Score=410.91  Aligned_cols=214  Identities=30%  Similarity=0.404  Sum_probs=194.5

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +++|+||||+++++++||.|+|+||+++.+||||+++++|++.|+.                     |.+|.||||||||
T Consensus        65 ~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG  123 (378)
T PRK15438         65 ATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVG  123 (378)
T ss_pred             CcccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEEC
Confidence            4799999999999999999999999999999999999999999851                     2379999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc---
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT---  157 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~---  157 (294)
                      +|+||+.+|++| ++|||+|++|||.....               .   . .....++++++++||+|++|+|+|++   
T Consensus       124 ~G~IG~~vA~~l-~a~G~~V~~~dp~~~~~---------------~---~-~~~~~~L~ell~~sDiI~lh~PLt~~g~~  183 (378)
T PRK15438        124 VGNVGRRLQARL-EALGIKTLLCDPPRADR---------------G---D-EGDFRSLDELVQEADILTFHTPLFKDGPY  183 (378)
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCccccc---------------c---c-ccccCCHHHHHhhCCEEEEeCCCCCCccc
Confidence            999999999997 79999999999753211               0   0 01236899999999999999999996   


Q ss_pred             -ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHH
Q 022672          158 -TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT  236 (294)
Q Consensus       158 -t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~  236 (294)
                       |+++++++.|+.||+|++|||+|||++||++||+++|++|++.+|+||||++||.++++||..++ ++||||||+|.+.
T Consensus       184 ~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~  262 (378)
T PRK15438        184 KTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEG  262 (378)
T ss_pred             ccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHH
Confidence             99999999999999999999999999999999999999999999999999999988888987765 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCC
Q 022672          237 REGMATLAALNVLGKIKGYPI  257 (294)
Q Consensus       237 ~~~~~~~~~~nl~~~~~g~~~  257 (294)
                      ..++..++.+|+.+|+ |.+.
T Consensus       263 ~~~~~~~~~~~l~~~~-~~~~  282 (378)
T PRK15438        263 KARGTTQVFEAYSKFI-GHEQ  282 (378)
T ss_pred             HHHHHHHHHHHHHHHH-cCcc
Confidence            9999999999999998 5554

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=7e-55  Score=409.81  Aligned_cols=221  Identities=29%  Similarity=0.384  Sum_probs=200.2

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      .++|+||||+++++++||.|+|+||+++.+||||+++++|++.|+.                     |.++.||||||||
T Consensus        65 ~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~---------------------g~~l~gktvGIIG  123 (381)
T PRK00257         65 CTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAERE---------------------GVDLAERTYGVVG  123 (381)
T ss_pred             CCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhccc---------------------CCCcCcCEEEEEC
Confidence            4799999999999999999999999999999999999999998841                     3479999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCc----
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK----  156 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~----  156 (294)
                      +|+||+.+|+++ ++|||+|++||+..... +             +     .....++++++++||+|++|+|+|+    
T Consensus       124 ~G~IG~~va~~l-~a~G~~V~~~Dp~~~~~-~-------------~-----~~~~~~l~ell~~aDiV~lh~Plt~~g~~  183 (381)
T PRK00257        124 AGHVGGRLVRVL-RGLGWKVLVCDPPRQEA-E-------------G-----DGDFVSLERILEECDVISLHTPLTKEGEH  183 (381)
T ss_pred             CCHHHHHHHHHH-HHCCCEEEEECCccccc-c-------------c-----CccccCHHHHHhhCCEEEEeCcCCCCccc
Confidence            999999999997 79999999999854321 0             0     0123589999999999999999999    


Q ss_pred             cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHH
Q 022672          157 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT  236 (294)
Q Consensus       157 ~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~  236 (294)
                      .|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.+|+||||++||.++++||+. |+++|||+||+|.+.
T Consensus       184 ~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~  262 (381)
T PRK00257        184 PTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDG  262 (381)
T ss_pred             cccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHH
Confidence            5999999999999999999999999999999999999999999999999999999888889985 999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          237 REGMATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       237 ~~~~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      ..++..++.+|+.+|+.+.+.....+.
T Consensus       263 ~~r~~~~~~~nl~~~~~~~~~~~~~~~  289 (381)
T PRK00257        263 KARGTAQIYQALCRFFGIPARVSLTDL  289 (381)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccchhcc
Confidence            999999999999999999876555443

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=4e-50  Score=342.89  Aligned_cols=177  Identities=42%  Similarity=0.564  Sum_probs=151.5

Q ss_pred             HHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHH
Q 022672           36 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV  115 (294)
Q Consensus        36 l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~  115 (294)
                      ++++|++.|+++.+++.++++.|  |......+.+++|+||||||+|.||+.+|+++ ++|||+|++||++....... .
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~-~   76 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGA-D   76 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHH-H
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhc-c
Confidence            68999999999999999999997  22233457899999999999999999999997 79999999999998754211 0


Q ss_pred             hhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672          116 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  195 (294)
                      .             ..+ ...+++|++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|+
T Consensus        77 ~-------------~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen   77 E-------------FGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             H-------------TTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             c-------------ccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence            0             111 34699999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCC
Q 022672          196 QNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIA  230 (294)
Q Consensus       196 ~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia  230 (294)
                      +|++.||+||||++||++. +|||++|||++|||+|
T Consensus       143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred             hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence            9999999999999999986 5999999999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.97  E-value=3.9e-31  Score=240.31  Aligned_cols=240  Identities=30%  Similarity=0.415  Sum_probs=209.0

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCC-CCCCc---ccCcccCCCEE
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-WLPNL---FVGNLLKGQTV   76 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~-w~~~~---~~g~~l~gktv   76 (294)
                      +|.|+|++|+.+|.+.||.|||.|+...+.+|+-++.++|.++|+.....+.+++|.|.. |....   .....++|.++
T Consensus       102 ig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~  181 (435)
T KOG0067|consen  102 IGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTL  181 (435)
T ss_pred             eccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccce
Confidence            478999999999999999999999999999999999999999999999999999998742 22111   11246899999


Q ss_pred             EEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCc
Q 022672           77 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  156 (294)
Q Consensus        77 GIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~  156 (294)
                      |++|+|..|++++.+ +++||..|+.||++.....+++               .+...+.++.+++-++|.+++||-+++
T Consensus       182 g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~~---------------lg~~rVytlqd~~~~sd~~S~hc~~~~  245 (435)
T KOG0067|consen  182 GLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDKS---------------LGLQRVYTLQDLLYQSDCVSLHCNLNE  245 (435)
T ss_pred             eeeccccccceehhh-hhcccceeeeecchhhhhhhhh---------------cccceecccchhhhhccceeeecccCc
Confidence            999999999999999 6999999999999876654432               334455679999999999999999999


Q ss_pred             cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC--CCCccCCCCeEEccCCCCCcH
Q 022672          157 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIASASK  234 (294)
Q Consensus       157 ~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~--~~~L~~~~nviiTPHia~~t~  234 (294)
                      .++++++.-.+++|++|++++|++||.++|+.+|.++|+.|++.+++       |..  ..||.+.||.++|||.+++++
T Consensus       246 ~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e  318 (435)
T KOG0067|consen  246 HNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSE  318 (435)
T ss_pred             ccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCCCcccchhhH
Confidence            99999999999999999999999999999999999999999999998       322  258999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCC---CCCCCCC
Q 022672          235 WTREGMATLAALNVLGKIKGYP---IWGNPNQ  263 (294)
Q Consensus       235 ~~~~~~~~~~~~nl~~~~~g~~---~~~~~n~  263 (294)
                      .+..++.+.++..+++-+.|+-   +++.+|+
T Consensus       319 ~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnk  350 (435)
T KOG0067|consen  319 AASVELREVAALEIRRAITGRIPDSLRNCVNK  350 (435)
T ss_pred             HHHHHHHHHHhhhhhhccCCCCchhHHHHHhh
Confidence            9999999999999998888763   4555555

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.87  E-value=3.5e-21  Score=184.37  Aligned_cols=159  Identities=21%  Similarity=0.326  Sum_probs=129.8

Q ss_pred             HHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHH
Q 022672           12 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM   91 (294)
Q Consensus        12 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~   91 (294)
                      ...+.+|+|+|+|++++.+++|+++++++++.      +..+|.+           +..+.||+++|+|+|.||+.+|++
T Consensus       210 ~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~-----------~~~LaGKtVgVIG~G~IGr~vA~r  272 (476)
T PTZ00075        210 KKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT-----------DVMIAGKTVVVCGYGDVGKGCAQA  272 (476)
T ss_pred             HCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc-----------CCCcCCCEEEEECCCHHHHHHHHH
Confidence            33457899999999999999999999999988      3445443           247999999999999999999999


Q ss_pred             HhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCC
Q 022672           92 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  171 (294)
Q Consensus        92 L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk  171 (294)
                      + ++||++|+++++.+........              .++ ...++++++++||+|++|+    .+.++|+++.|+.||
T Consensus       273 L-~a~Ga~ViV~e~dp~~a~~A~~--------------~G~-~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MK  332 (476)
T PTZ00075        273 L-RGFGARVVVTEIDPICALQAAM--------------EGY-QVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMK  332 (476)
T ss_pred             H-HHCCCEEEEEeCCchhHHHHHh--------------cCc-eeccHHHHHhcCCEEEECC----CcccccCHHHHhccC
Confidence            7 7999999999776543211100              111 2357999999999999985    378999999999999


Q ss_pred             CCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC
Q 022672          172 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK  214 (294)
Q Consensus       172 ~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~  214 (294)
                      +|++|||+||+   |++.++++|+++.    ++|+++.||...
T Consensus       333 pGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        333 NNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             CCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence            99999999999   7888888988754    789999999754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.78  E-value=8.7e-19  Score=160.17  Aligned_cols=140  Identities=19%  Similarity=0.219  Sum_probs=113.5

Q ss_pred             ccccCcccHH-HHHhCCcEEE------eCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCC
Q 022672            2 AVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ   74 (294)
Q Consensus         2 g~G~d~id~~-~~~~~gI~v~------n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gk   74 (294)
                      .+|+++.|++ +|+++||+|+      |.+.+++.++||.++.+++...                        +.+++|+
T Consensus        97 ~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~------------------------~~~l~gk  152 (287)
T TIGR02853        97 YVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT------------------------DFTIHGS  152 (287)
T ss_pred             EEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc------------------------CCCCCCC
Confidence            5799999999 9999999999      9999999999999998777431                        1368999


Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  154 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl  154 (294)
                      +++|+|+|.||+.+|+.| +++|++|++++++..... ..        ...+..   .....+++++++++|+|++|+|.
T Consensus       153 ~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~~-~~--------~~~g~~---~~~~~~l~~~l~~aDiVint~P~  219 (287)
T TIGR02853       153 NVMVLGFGRTGMTIARTF-SALGARVFVGARSSADLA-RI--------TEMGLI---PFPLNKLEEKVAEIDIVINTIPA  219 (287)
T ss_pred             EEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HH--------HHCCCe---eecHHHHHHHhccCCEEEECCCh
Confidence            999999999999999997 799999999999865321 11        011111   11234678899999999999995


Q ss_pred             CccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          155 DKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       155 t~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +     +++++.++.|++++++||++...
T Consensus       220 ~-----ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       220 L-----VLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             H-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence            3     77899999999999999998743

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02494 adenosylhomocysteinase

Probab=99.67  E-value=2.8e-16  Score=150.43  Aligned_cols=122  Identities=19%  Similarity=0.292  Sum_probs=101.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ..+.||+++|+|+|.||+.+|+++ ++||++|+++++.+.........              ++. ..+++++++.+|+|
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~~~--------------G~~-vv~leEal~~ADVV  313 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQALME--------------GYQ-VLTLEDVVSEADIF  313 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHHhc--------------CCe-eccHHHHHhhCCEE
Confidence            457999999999999999999996 79999999998876432221111              111 23689999999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHcCCcceEEeeCCCCCC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEH--LKQNPMFRVGLDVFEDEP  211 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR-G~~vd~~aL~~a--L~~g~i~ga~lDV~~~EP  211 (294)
                      +.+    ..++++++.+.|+.||+|++|+|+|| +..||+++|.++  ++.+.++ +.+|+|+.|-
T Consensus       314 I~t----TGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        314 VTT----TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             EEC----CCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            974    45789999999999999999999999 679999999998  8998887 9999999864

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.57  E-value=1.5e-14  Score=137.41  Aligned_cols=120  Identities=27%  Similarity=0.288  Sum_probs=99.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+.|++|+|+|+|.||+.+|+++ +++|++|+++|+.+.......         .     .++ ...+++++++.+|+|+
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A~---------~-----~G~-~v~~leeal~~aDVVI  255 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEAA---------M-----DGF-RVMTMEEAAKIGDIFI  255 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHHH---------h-----cCC-EeCCHHHHHhcCCEEE
Confidence            58999999999999999999996 799999999987664322211         1     111 2246788999999998


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCcceEEeeCCCC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFED  209 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~~aL~~g~i~ga~lDV~~~  209 (294)
                      .+..    +.++++.+.+..||+|++|+|++|+++ ||.++|.+++.+.+..+..+|+|.-
T Consensus       256 taTG----~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       256 TATG----NKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             ECCC----CHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            7654    688899999999999999999999998 9999999999888888999999874

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.51  E-value=3.4e-14  Score=130.23  Aligned_cols=93  Identities=25%  Similarity=0.285  Sum_probs=75.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ..|+||||||||+|.||+++|++| +.||++|++|++..... +..        ..     .++. ..+++|++++||+|
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s~-~~A--------~~-----~G~~-v~sl~Eaak~ADVV   75 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKSF-EVA--------KA-----DGFE-VMSVSEAVRTAQVV   75 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchhh-HHH--------HH-----cCCE-ECCHHHHHhcCCEE
Confidence            479999999999999999999998 79999999997653221 110        00     1122 24899999999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEE
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVN  178 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN  178 (294)
                      ++|+|+ ++++++++++.+..||+|++|+-
T Consensus        76 ~llLPd-~~t~~V~~~eil~~MK~GaiL~f  104 (335)
T PRK13403         76 QMLLPD-EQQAHVYKAEVEENLREGQMLLF  104 (335)
T ss_pred             EEeCCC-hHHHHHHHHHHHhcCCCCCEEEE
Confidence            999996 77899999999999999998874

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.51  E-value=1.5e-13  Score=126.24  Aligned_cols=137  Identities=20%  Similarity=0.194  Sum_probs=105.7

Q ss_pred             ccccCcccHHHHHhCCcEEEeCCCC------CcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCE
Q 022672            2 AVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT   75 (294)
Q Consensus         2 g~G~d~id~~~~~~~gI~v~n~~~~------~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gkt   75 (294)
                      |.+.+++| +.|+++||++.+....      ++.++||.++..++...                        +.++.|++
T Consensus       100 G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~------------------------~~~l~g~k  154 (296)
T PRK08306        100 GIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEHT------------------------PITIHGSN  154 (296)
T ss_pred             ecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHhC------------------------CCCCCCCE
Confidence            56778888 8899999999988865      88899999776533110                        13578999


Q ss_pred             EEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCC
Q 022672           76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  155 (294)
Q Consensus        76 vGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt  155 (294)
                      ++|||+|.+|+.+++.| +.+|++|+++|++.... +. .       ...+.   ......++.+.++++|+|+.++|. 
T Consensus       155 vlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~-~~-~-------~~~G~---~~~~~~~l~~~l~~aDiVI~t~p~-  220 (296)
T PRK08306        155 VLVLGFGRTGMTLARTL-KALGANVTVGARKSAHL-AR-I-------TEMGL---SPFHLSELAEEVGKIDIIFNTIPA-  220 (296)
T ss_pred             EEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHH-HH-H-------HHcCC---eeecHHHHHHHhCCCCEEEECCCh-
Confidence            99999999999999997 79999999999986542 11 1       11111   111234678889999999999983 


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCC
Q 022672          156 KTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       156 ~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                          .+++++.++.|++++++||++.
T Consensus       221 ----~~i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        221 ----LVLTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             ----hhhhHHHHHcCCCCcEEEEEcc
Confidence                5688999999999999999975

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.42  E-value=3.9e-13  Score=112.99  Aligned_cols=116  Identities=24%  Similarity=0.263  Sum_probs=86.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||+.+|++| ...|.+|++||+++... +.+.+        .     +.....++.|++++||+|++|+|
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~~--------~-----g~~~~~s~~e~~~~~dvvi~~v~   66 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKA-EALAE--------A-----GAEVADSPAEAAEQADVVILCVP   66 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHH-HHHHH--------T-----TEEEESSHHHHHHHBSEEEE-SS
T ss_pred             CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhh-hhhHH--------h-----hhhhhhhhhhHhhcccceEeecc
Confidence            5899999999999999998 57899999999886543 22221        1     13456899999999999999999


Q ss_pred             CCcccccccc-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeC
Q 022672          154 LDKTTYHLIN-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  206 (294)
Q Consensus       154 lt~~t~~li~-~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV  206 (294)
                      ..++++.++. .+.++.+++|.++||++..+.-....+.+.+.+..+.  .+|.
T Consensus        67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (163)
T PF03446_consen   67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA  118 (163)
T ss_dssp             SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred             cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence            8777777662 2278889999999999999999999999999876543  4453

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.40  E-value=1.3e-12  Score=118.52  Aligned_cols=124  Identities=22%  Similarity=0.171  Sum_probs=99.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      .+|||||+|.||..+|++| ..-|.+|++||+++.+..+..        ...+     .....+..|+.+++|+|++|+|
T Consensus         1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka~~~~--------~~~G-----a~~a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKAAELL--------AAAG-----ATVAASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhhhHHH--------HHcC-----CcccCCHHHHHHhCCEEEEecC
Confidence            4799999999999999998 688999999999987643321        1112     2345688899999999999999


Q ss_pred             CCcccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC
Q 022672          154 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  211 (294)
Q Consensus       154 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  211 (294)
                      ..++.+.++.  ...++.||||+++||+++.+......+.+.++++.+...--=|.-..+
T Consensus        67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~  126 (286)
T COG2084          67 DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP  126 (286)
T ss_pred             CHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence            9999888875  578999999999999999999999999999999876533222444443

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.38  E-value=3.8e-12  Score=106.00  Aligned_cols=104  Identities=29%  Similarity=0.426  Sum_probs=75.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ..+.||++.|+|||.+|+.+|+.| +++|++|++++..+-...+...++|               ...+++++++++|++
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf---------------~v~~~~~a~~~adi~   82 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGF---------------EVMTLEEALRDADIF   82 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT----------------EEE-HHHHTTT-SEE
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCc---------------EecCHHHHHhhCCEE
Confidence            469999999999999999999997 7999999999998876655544432               235799999999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  192 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~~  192 (294)
                      +.+..    .+.++..+.|..||+|+++.|++.-.. +|.+.|.+
T Consensus        83 vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   83 VTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             EE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             EECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            88865    367889999999999999999986554 56555533

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.37  E-value=5.3e-12  Score=120.70  Aligned_cols=144  Identities=22%  Similarity=0.259  Sum_probs=104.4

Q ss_pred             HHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHH
Q 022672           12 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM   91 (294)
Q Consensus        12 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~   91 (294)
                      ...+.+++|.|++..+..+.-|...+.-.+....+      .+.           .+..+.|++++|+|+|.||+.+|++
T Consensus       168 ~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai------~ra-----------t~~~l~Gk~VlViG~G~IG~~vA~~  230 (425)
T PRK05476        168 KDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGI------KRA-----------TNVLIAGKVVVVAGYGDVGKGCAQR  230 (425)
T ss_pred             HcCCCCCCEEecCCcccCccccccHHHHhhhHHHH------HHh-----------ccCCCCCCEEEEECCCHHHHHHHHH
Confidence            33467899999999988876554333222221111      110           1235899999999999999999999


Q ss_pred             HhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCC
Q 022672           92 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  171 (294)
Q Consensus        92 L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk  171 (294)
                      + +++|++|+++|+.+........              .++. ..+++++++.+|+|+.+..    +.++|+.+.+..||
T Consensus       231 l-r~~Ga~ViV~d~dp~ra~~A~~--------------~G~~-v~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK  290 (425)
T PRK05476        231 L-RGLGARVIVTEVDPICALQAAM--------------DGFR-VMTMEEAAELGDIFVTATG----NKDVITAEHMEAMK  290 (425)
T ss_pred             H-HhCCCEEEEEcCCchhhHHHHh--------------cCCE-ecCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCC
Confidence            7 7999999999987654322110              0111 2468899999999988763    57789999999999


Q ss_pred             CCcEEEEcCCCcc-cCHHHHHH
Q 022672          172 KEAILVNCSRGPV-IDEVALVE  192 (294)
Q Consensus       172 ~gailIN~aRG~~-vd~~aL~~  192 (294)
                      +|++++|+++... +|.++|.+
T Consensus       291 ~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        291 DGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             CCCEEEEcCCCCCccChHHHhh
Confidence            9999999999886 77777754

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.30  E-value=1e-11  Score=113.73  Aligned_cols=111  Identities=20%  Similarity=0.191  Sum_probs=87.7

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  154 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl  154 (294)
                      +|||||+|.||+.+|+.| ...|++|++||+++... +.+.        ..+     .....+.++++++||+|++|+|.
T Consensus         1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~~-~~~~--------~~g-----~~~~~~~~~~~~~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEVA-DELL--------AAG-----AVTAETARQVTEQADVIFTMVPD   65 (291)
T ss_pred             CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HCC-----CcccCCHHHHHhcCCEEEEecCC
Confidence            489999999999999998 57899999999986442 2211        111     12345788999999999999998


Q ss_pred             Cccccccc-c-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          155 DKTTYHLI-N-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       155 t~~t~~li-~-~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ++.++.++ . ...+..+++|+++||+++....+..++.+.+++..+.
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            77777664 3 3467789999999999999998889999999876544

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.30  E-value=1.1e-11  Score=113.65  Aligned_cols=123  Identities=20%  Similarity=0.230  Sum_probs=93.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||+.+|+.| ...|.+|++||++.... +.+.        ..+     .....++++++++||+|++|+|
T Consensus         3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~-~~~~--------~~g-----~~~~~~~~e~~~~~d~vi~~vp   67 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAV-AEVI--------AAG-----AETASTAKAVAEQCDVIITMLP   67 (296)
T ss_pred             ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HCC-----CeecCCHHHHHhcCCEEEEeCC
Confidence            4799999999999999998 57899999999986542 1111        111     1234678999999999999999


Q ss_pred             CCcccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC
Q 022672          154 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  211 (294)
Q Consensus       154 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  211 (294)
                      .+.+++.++.  .+.+..+++|.++||+++.......++.+.+.+..+...---|+..+|
T Consensus        68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            8777777663  346788999999999999999888899999887655443333554443

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.28  E-value=1e-11  Score=100.77  Aligned_cols=35  Identities=43%  Similarity=0.622  Sum_probs=32.1

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHH
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELA   35 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~   35 (294)
                      .|+|+|+||+++|+++||.|+|+||+++.+||||+
T Consensus        67 ~~~G~d~id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   67 AGAGVDNIDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             SSSSCTTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             cccccCcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            48999999999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.25  E-value=4.1e-11  Score=110.29  Aligned_cols=113  Identities=19%  Similarity=0.259  Sum_probs=89.9

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEEc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  151 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~  151 (294)
                      +|||||+|.||+.+|++| ...|.+|++||++.+.. +.+.        ..     +.....+.++++++   +|+|++|
T Consensus         2 ~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~~--------~~-----g~~~~~s~~~~~~~~~~advVi~~   66 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAV-DVAG--------KL-----GITARHSLEELVSKLEAPRTIWVM   66 (299)
T ss_pred             EEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHH--------HC-----CCeecCCHHHHHHhCCCCCEEEEE
Confidence            699999999999999998 57899999999986542 2211        11     12334688898876   6999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  205 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD  205 (294)
                      +|..+.++.++ .+.+..+++|.++||+++....+..++.+.+++..+.  .+|
T Consensus        67 vp~~~~~~~v~-~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         67 VPAGEVTESVI-KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             ecCchHHHHHH-HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            99766777777 4677889999999999999999999999999876653  366

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.25  E-value=3e-11  Score=111.07  Aligned_cols=112  Identities=14%  Similarity=0.195  Sum_probs=89.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||.++|+.| ...|.+|++||+++... +.+.        ..+     .....+..+++++||+|++|+|
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l-~~~G~~V~v~d~~~~~~-~~~~--------~~g-----~~~~~s~~~~~~~aDvVi~~vp   66 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNL-LKQGHQLQVFDVNPQAV-DALV--------DKG-----ATPAASPAQAAAGAEFVITMLP   66 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HcC-----CcccCCHHHHHhcCCEEEEecC
Confidence            4799999999999999998 47799999999986542 2211        111     1234688899999999999999


Q ss_pred             CCcccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          154 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       154 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      .....+.++.  ...+..+++|.++||++++.+.....+.+.+.+..+.
T Consensus        67 ~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~  115 (296)
T PRK15461         67 NGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS  115 (296)
T ss_pred             CHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            7666666653  3467789999999999999999999999999887655

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.16  E-value=2.1e-10  Score=105.75  Aligned_cols=114  Identities=21%  Similarity=0.263  Sum_probs=89.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l  150 (294)
                      ++|||||+|.||+.+|+.| ...|.+|.+||+++... +.+.        ..     +.....+++++++.   +|+|++
T Consensus         1 m~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~~--------~~-----g~~~~~~~~e~~~~~~~~dvvi~   65 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAV-EALA--------EE-----GATGADSLEELVAKLPAPRVVWL   65 (301)
T ss_pred             CEEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHH--------HC-----CCeecCCHHHHHhhcCCCCEEEE
Confidence            3799999999999999998 57899999999987543 2211        11     12234688888876   699999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  205 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD  205 (294)
                      ++|..+.+..++ ...+..+++|.++||++++.......+.+.+++..+.  .+|
T Consensus        66 ~v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~d  117 (301)
T PRK09599         66 MVPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVD  117 (301)
T ss_pred             EecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEe
Confidence            999766777776 4677889999999999999999999999999887655  346

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.12  E-value=1.9e-10  Score=106.68  Aligned_cols=119  Identities=22%  Similarity=0.186  Sum_probs=82.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ..|.|++|||||+|+||+++|+.| +.+|++|+++++......+...        .     .++. ..+.++++++||+|
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~A~--------~-----~G~~-~~s~~eaa~~ADVV   77 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKKAE--------A-----DGFE-VLTVAEAAKWADVI   77 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHHHH--------H-----CCCe-eCCHHHHHhcCCEE
Confidence            468999999999999999999998 6899999988765433221110        0     1122 24889999999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  212 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  212 (294)
                      ++++|.+.. ..+++++.+..|++|++| -.+-|--+..  +      ...-+..+||+-..|-
T Consensus        78 vLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~--~------~~~p~~~~~Vi~vaPn  131 (330)
T PRK05479         78 MILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGFNIHF--G------QIVPPADVDVIMVAPK  131 (330)
T ss_pred             EEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCCChhh--c------eeccCCCCcEEEeCCC
Confidence            999996544 677777888899999988 4555521111  1      0112345677777764

>PLN02712 arogenate dehydrogenase

Probab=99.11  E-value=3e-10  Score=114.82  Aligned_cols=114  Identities=17%  Similarity=0.193  Sum_probs=85.0

Q ss_pred             ccCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-c
Q 022672           66 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-E  144 (294)
Q Consensus        66 ~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~  144 (294)
                      ..+.++.+++|||||+|.||+++|+.| +.+|++|++||+....  +..        ...+     .....++++++. .
T Consensus       362 ~~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~--~~a--------~~~G-----v~~~~~~~el~~~~  425 (667)
T PLN02712        362 GCVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYS--DEA--------QKLG-----VSYFSDADDLCEEH  425 (667)
T ss_pred             hccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHH--HHH--------HHcC-----CeEeCCHHHHHhcC
Confidence            456788999999999999999999998 6889999999987432  110        0111     123467888876 5


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      +|+|++|+| ...+..++.+-....||+|++++|++.++-...+.+.+.+..
T Consensus       426 aDvVILavP-~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~  476 (667)
T PLN02712        426 PEVILLCTS-ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ  476 (667)
T ss_pred             CCEEEECCC-hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence            999999999 467777776555557999999999999885555555555544

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.11  E-value=4e-10  Score=109.91  Aligned_cols=128  Identities=11%  Similarity=0.124  Sum_probs=99.6

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEEc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  151 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~  151 (294)
                      +|||||+|.||+.+|++| ...|.+|.+||++.... +.+.+..    ...+..  ......+++|+++.   +|+|++|
T Consensus         8 ~IG~IGLG~MG~~mA~nL-~~~G~~V~V~NRt~~k~-~~l~~~~----~~~Ga~--~~~~a~s~~e~v~~l~~~dvIi~~   79 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNI-AEKGFPISVYNRTTSKV-DETVERA----KKEGNL--PLYGFKDPEDFVLSIQKPRSVIIL   79 (493)
T ss_pred             CEEEEeeHHHHHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHhh----hhcCCc--ccccCCCHHHHHhcCCCCCEEEEE
Confidence            699999999999999998 47899999999987653 2222210    000111  11234688898876   9999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  211 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  211 (294)
                      +|..+.+..++ ...+..|++|.++||+++...-+...+.+.+++..+.....=|.-.++
T Consensus        80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         80 VKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             CCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            99888888888 578889999999999999999999999999998887766666676554

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.09  E-value=6.4e-10  Score=106.20  Aligned_cols=105  Identities=24%  Similarity=0.348  Sum_probs=82.0

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      +..+.|++|+|+|+|.||+.+|+.+ +++|++|+++|+.+......         ..     .++ ...++++.++.+|+
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A---------~~-----~G~-~~~~~~e~v~~aDV  260 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQA---------AM-----EGY-EVMTMEEAVKEGDI  260 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHHH---------Hh-----cCC-EEccHHHHHcCCCE
Confidence            3457999999999999999999986 89999999998876442211         01     111 12356788899999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  192 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~~  192 (294)
                      |+.+..    +.++++.+.+..||+|++++|+|++.+ +|..+|..
T Consensus       261 VI~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         261 FVTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             EEECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            998764    466788888999999999999999876 88777764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02256 arogenate dehydrogenase

Probab=99.06  E-value=3.5e-09  Score=97.76  Aligned_cols=109  Identities=15%  Similarity=0.194  Sum_probs=78.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~  149 (294)
                      -.+++|||||+|.||+++|+.| +..|.+|++||++....  . ..       ..+     +....++++++ .++|+|+
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~--~-a~-------~~g-----v~~~~~~~e~~~~~aDvVi   97 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSD--I-AA-------ELG-----VSFFRDPDDFCEEHPDVVL   97 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHH--H-HH-------HcC-----CeeeCCHHHHhhCCCCEEE
Confidence            3567999999999999999998 57899999999875321  1 10       111     12345788876 4799999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      +|+|. ..+..++.+-....+++++++++++.++-+..+++.+.+..
T Consensus        98 lavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~  143 (304)
T PLN02256         98 LCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE  143 (304)
T ss_pred             EecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence            99994 45666664432566899999999999765556666665543

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.04  E-value=1.2e-09  Score=100.43  Aligned_cols=113  Identities=15%  Similarity=0.131  Sum_probs=87.0

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  154 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl  154 (294)
                      +|||||+|.||..+|+.| ...|.+|++||+.+..  +.+.        ..+     .....+..+++++||+|++|+|.
T Consensus         2 ~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~~--------~~g-----~~~~~s~~~~~~~advVi~~v~~   65 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DELL--------SLG-----AVSVETARQVTEASDIIFIMVPD   65 (292)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHHH--------HcC-----CeecCCHHHHHhcCCEEEEeCCC
Confidence            699999999999999998 5778999999987531  2211        111     22346788999999999999997


Q ss_pred             Ccccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 022672          155 DKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  205 (294)
Q Consensus       155 t~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD  205 (294)
                      .++.+.++.  ...+..+++|.++|+++....-....+.+.+++..+.  .+|
T Consensus        66 ~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd  116 (292)
T PRK15059         66 TPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD  116 (292)
T ss_pred             hHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence            766666653  2356778999999999999998888999988876543  455

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.04  E-value=1.1e-09  Score=106.61  Aligned_cols=128  Identities=16%  Similarity=0.243  Sum_probs=98.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---cCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~l  150 (294)
                      .+|||||+|.||+.+|++| ...|.+|.+||++.+.. +.+.+.       ............+++|+++   ++|+|++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~-~~l~~~-------~~~~g~~i~~~~s~~e~v~~l~~~d~Iil   72 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKT-EEFVKK-------AKEGNTRVKGYHTLEELVNSLKKPRKVIL   72 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHHh-------hhhcCCcceecCCHHHHHhcCCCCCEEEE
Confidence            4799999999999999998 57899999999987653 222110       0000111224568999886   5899999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  211 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  211 (294)
                      ++|....+..++ .+.+..+++|.++|+++.+..-|...+.+.+.+..+.....=|...++
T Consensus        73 ~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         73 LIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             EeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            999888888888 567888999999999999999999999999998877755555565543

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=98.99  E-value=3.4e-09  Score=97.58  Aligned_cols=110  Identities=18%  Similarity=0.266  Sum_probs=84.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---hhcCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l  150 (294)
                      ++|||||+|.||..+|+.| ...|.+|.+||+++... +.+.        ..+.     ....+++++   ++++|+|++
T Consensus         1 M~Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~~-~~l~--------~~g~-----~~~~s~~~~~~~~~~~dvIi~   65 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDAV-KAMK--------EDRT-----TGVANLRELSQRLSAPRVVWV   65 (298)
T ss_pred             CEEEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHH--------HcCC-----cccCCHHHHHhhcCCCCEEEE
Confidence            3799999999999999998 47899999999987542 2211        1111     112455554   456899999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ++|.. .+..++ ++....+++|.++||++.+...+...+.+.+++..+.
T Consensus        66 ~vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~  113 (298)
T TIGR00872        66 MVPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH  113 (298)
T ss_pred             EcCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence            99965 667776 5677889999999999999989999999988876654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02858 fructose-bisphosphate aldolase

Probab=98.99  E-value=1.8e-09  Score=116.61  Aligned_cols=120  Identities=15%  Similarity=0.154  Sum_probs=94.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ..++|||||+|.||..||++| ...|.+|.+||+++... +.+.        ..+     .....+..|+.++||+|++|
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L-~~~G~~v~v~dr~~~~~-~~l~--------~~G-----a~~~~s~~e~a~~advVi~~   67 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSL-LRSGFKVQAFEISTPLM-EKFC--------ELG-----GHRCDSPAEAAKDAAALVVV   67 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HcC-----CeecCCHHHHHhcCCEEEEE
Confidence            456899999999999999998 47899999999986542 2221        112     23457899999999999999


Q ss_pred             cCCCccccccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeC
Q 022672          152 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  206 (294)
Q Consensus       152 ~Plt~~t~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV  206 (294)
                      +|..+..+.++  ....++.+++|.++|++|+.+.-....+.+.+++..-....+|.
T Consensus        68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa  124 (1378)
T PLN02858         68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA  124 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence            99888888776  35678889999999999999999999999999876511234553

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.97  E-value=6.5e-09  Score=100.60  Aligned_cols=134  Identities=16%  Similarity=0.245  Sum_probs=91.9

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+||| +|.||+++|+.| +..|.+|++||++..... ....       ..+     .....+.++.+.+||+|++|+
T Consensus         1 MkI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~~-~~a~-------~~g-----v~~~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKGK-EVAK-------ELG-----VEYANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHHH-HHHH-------HcC-----CeeccCHHHHhccCCEEEEec
Confidence            4799997 999999999997 678999999998764321 1111       111     123357788899999999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCC--CCCCccCCCCeEEccCC
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHI  229 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~~~L~~~~nviiTPHi  229 (294)
                      |. +.+..++ ++....+++++++++++..+....+++.+.+..+      ..+...-|.  |..+++.-..+++||+-
T Consensus        67 p~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~------~~~V~~HPmaGp~~~~~~g~~~il~p~~  137 (437)
T PRK08655         67 PI-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEG------VEILPTHPMFGPRTPSLKGQVVILTPTE  137 (437)
T ss_pred             CH-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCC------CEEEEcCCCCCCCCcccCCCEEEEecCC
Confidence            94 4455555 5666778999999999976655555555554332      122223354  33457777889999975

>PLN02858 fructose-bisphosphate aldolase

Probab=98.97  E-value=2.4e-09  Score=115.67  Aligned_cols=110  Identities=20%  Similarity=0.258  Sum_probs=89.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ..++|||||+|.||..+|++| ...|++|++||+++... +.+.        ..+     .....+..+++++||+|++|
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l~--------~~G-----a~~~~s~~e~~~~aDvVi~~  387 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTL-VRFE--------NAG-----GLAGNSPAEVAKDVDVLVIM  387 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHH--------HcC-----CeecCCHHHHHhcCCEEEEe
Confidence            347899999999999999998 58899999999986542 2211        111     12346889999999999999


Q ss_pred             cCCCccccccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          152 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       152 ~Plt~~t~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      +|..++++.++  +...+..+++|.++|+++..+.-....+.+.+++
T Consensus       388 V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~  434 (1378)
T PLN02858        388 VANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN  434 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence            99888888877  3567888999999999999998888899888877

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.93  E-value=3.5e-09  Score=96.99  Aligned_cols=111  Identities=22%  Similarity=0.234  Sum_probs=84.2

Q ss_pred             EEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc
Q 022672           78 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  157 (294)
Q Consensus        78 IIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~  157 (294)
                      |||+|.||.++|+.| ...|.+|++||++.... +.+.        ..+     .....++.+++++||+|++|+|...+
T Consensus         1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l~--------~~g-----~~~~~s~~~~~~~advVil~vp~~~~   65 (288)
T TIGR01692         1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDAV-EEAV--------AAG-----AQAAASPAEAAEGADRVITMLPAGQH   65 (288)
T ss_pred             CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHHH-HHHH--------HcC-----CeecCCHHHHHhcCCEEEEeCCChHH
Confidence            689999999999998 57899999999986542 2211        111     22346889999999999999997666


Q ss_pred             cccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 022672          158 TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  205 (294)
Q Consensus       158 t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD  205 (294)
                      .+.++.  ...+..+++|.++||++..+.-....+.+.+++..+.  .+|
T Consensus        66 ~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd  113 (288)
T TIGR01692        66 VISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD  113 (288)
T ss_pred             HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            666662  4567789999999999988877777888888765544  456

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.92  E-value=5.5e-09  Score=101.66  Aligned_cols=124  Identities=21%  Similarity=0.262  Sum_probs=91.9

Q ss_pred             EEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hcCCEEEEcc
Q 022672           76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISLHP  152 (294)
Q Consensus        76 vGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l~~  152 (294)
                      |||||+|.||+.+|++| ...|.+|++||++.... +.+.+        ............++++++   +++|+|++++
T Consensus         2 IG~IGLG~MG~~mA~nL-~~~G~~V~v~drt~~~~-~~l~~--------~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v   71 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNM-ADHGFTVSVYNRTPEKT-DEFLA--------EHAKGKKIVGAYSIEEFVQSLERPRKIMLMV   71 (467)
T ss_pred             EEEEeeHHHHHHHHHHH-HhcCCeEEEEeCCHHHH-HHHHh--------hccCCCCceecCCHHHHHhhcCCCCEEEEEC
Confidence            89999999999999998 57799999999987653 22221        100000112345677766   4689999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCC
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE  210 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~E  210 (294)
                      |..+.+..++ .+.+..+++|.++||++....-+...+.+.+.+..+.....=|...+
T Consensus        72 ~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~  128 (467)
T TIGR00873        72 KAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE  128 (467)
T ss_pred             CCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence            9767777777 56778899999999999999999999999998877664444455544

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=98.91  E-value=3.6e-09  Score=95.39  Aligned_cols=114  Identities=18%  Similarity=0.195  Sum_probs=91.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      -+.++||+||+|.||..++..| -..|.+|++||++.+.. ..|.+        ++     .....+..|+.+.||+|+.
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nL-ik~G~kVtV~dr~~~k~-~~f~~--------~G-----a~v~~sPaeVae~sDvvit   97 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNL-IKAGYKVTVYDRTKDKC-KEFQE--------AG-----ARVANSPAEVAEDSDVVIT   97 (327)
T ss_pred             cccceeeEEeeccchHHHHHHH-HHcCCEEEEEeCcHHHH-HHHHH--------hc-----hhhhCCHHHHHhhcCEEEE
Confidence            3578999999999999999998 58999999999987653 22222        22     2345789999999999999


Q ss_pred             ccCCCcccccccc--HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCc
Q 022672          151 HPVLDKTTYHLIN--KERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       151 ~~Plt~~t~~li~--~~~l~~mk~gail-IN~aRG~~vd~~aL~~aL~~g~i  199 (294)
                      ++|...+.+.++.  ...++.+++|... |+.++-+.--...|.++++....
T Consensus        98 mv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~  149 (327)
T KOG0409|consen   98 MVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGG  149 (327)
T ss_pred             EcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCC
Confidence            9998888888773  4577888888777 89999888888888888877643

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.91  E-value=1.4e-08  Score=92.58  Aligned_cols=94  Identities=15%  Similarity=0.253  Sum_probs=65.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||+++|+.| +..|.+|++||++.... +..        ...+...   ....+. +.+++||+|++|+|
T Consensus         1 m~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~-~~a--------~~~g~~~---~~~~~~-~~~~~aDlVilavp   66 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTC-ERA--------IERGLVD---EASTDL-SLLKDCDLVILALP   66 (279)
T ss_pred             CeEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHH--------HHCCCcc---cccCCH-hHhcCCCEEEEcCC
Confidence            3799999999999999998 56799999999876542 111        1111111   111234 46789999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      . .....++ ++....+++++++++++.-+
T Consensus        67 ~-~~~~~~~-~~l~~~l~~~~ii~d~~Svk   94 (279)
T PRK07417         67 I-GLLLPPS-EQLIPALPPEAIVTDVGSVK   94 (279)
T ss_pred             H-HHHHHHH-HHHHHhCCCCcEEEeCcchH
Confidence            4 3334433 56667789999999997654

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.90  E-value=5.7e-09  Score=96.65  Aligned_cols=98  Identities=24%  Similarity=0.258  Sum_probs=68.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      |+||+|||||+|+||+++|+.| +.+|++|+++++......+...        ..     ++. ..+.++++++||+|++
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~a~--------~~-----Gv~-~~s~~ea~~~ADiVvL   65 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKKAT--------ED-----GFK-VGTVEEAIPQADLIMN   65 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHHHH--------HC-----CCE-ECCHHHHHhcCCEEEE
Confidence            5789999999999999999998 6889988766544332222211        11     122 2468889999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  185 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v  185 (294)
                      ++|... ....+.++....|+++. +|.++-|=-+
T Consensus        66 aVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        66 LLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             eCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccH
Confidence            999332 34455566778888886 7777776433

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.87  E-value=2.6e-08  Score=92.45  Aligned_cols=120  Identities=16%  Similarity=0.219  Sum_probs=83.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHH--HHHhhhhhhhhhcCCC----CccccccCCHHHHhhcCCE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADV  147 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~l~ell~~aDi  147 (294)
                      ++|||||.|.||..+|..++ ..|++|+.||+++.....  ......-..+...+..    ........++++.+++||+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl   86 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF   86 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence            68999999999999999974 789999999998653211  1111111111111100    0112345689999999999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      |+-++|...+.+..+-++..+.++++++| .++.. -+...++.+.++.
T Consensus        87 ViEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS-~l~~s~la~~~~~  133 (321)
T PRK07066         87 IQESAPEREALKLELHERISRAAKPDAII-ASSTS-GLLPTDFYARATH  133 (321)
T ss_pred             EEECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCC-ccCHHHHHHhcCC
Confidence            99999999988888888888999999854 44444 3466777777743

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.87  E-value=2e-08  Score=92.81  Aligned_cols=141  Identities=21%  Similarity=0.199  Sum_probs=84.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .++|+|||+|.||+.+|+.| +..|  .+|++||++.... +..        ...+.   ......++++.+++||+|++
T Consensus         6 ~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~-~~a--------~~~g~---~~~~~~~~~~~~~~aDvVii   72 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETR-ARA--------RELGL---GDRVTTSAAEAVKGADLVIL   72 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHH-HHH--------HhCCC---CceecCCHHHHhcCCCEEEE
Confidence            46899999999999999997 4556  4899999976532 111        11111   11123567888999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC---CCCC-C--C-CCccCCCCe
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE---DEPY-M--K-PGLSEMKNA  223 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~---~EP~-~--~-~~L~~~~nv  223 (294)
                      |+|. ..+..++ ++....++++.++++++..+.--.+++.+.+.. .+.  .+....   .|-. +  . ..|+.-.++
T Consensus        73 avp~-~~~~~v~-~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~  147 (307)
T PRK07502         73 CVPV-GASGAVA-AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWC  147 (307)
T ss_pred             CCCH-HHHHHHH-HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeE
Confidence            9994 3333333 455667899999999866542222222222221 111  233221   1110 1  1 246666788


Q ss_pred             EEccCCCC
Q 022672          224 IVVPHIAS  231 (294)
Q Consensus       224 iiTPHia~  231 (294)
                      ++||+-++
T Consensus       148 ~l~~~~~~  155 (307)
T PRK07502        148 ILTPPEGT  155 (307)
T ss_pred             EEeCCCCC
Confidence            99997554

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.87  E-value=1.9e-08  Score=94.99  Aligned_cols=122  Identities=18%  Similarity=0.243  Sum_probs=82.8

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      +...||+|||+ |.||+++|+.|.+.++.+|++||+...                         ...++++.+++||+|+
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVi   56 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-------------------------GSLDPATLLQRADVLI   56 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEE
Confidence            34679999999 999999999984346999999997421                         1246788899999999


Q ss_pred             EccCCCccccccccHHHH---hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC---CCccCCCCe
Q 022672          150 LHPVLDKTTYHLINKERL---ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK---PGLSEMKNA  223 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l---~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~---~~L~~~~nv  223 (294)
                      +|+|. ..+..++ ++..   ..+++++++++++.-+.    ...+++.....     ++...=|...   +.+++-.++
T Consensus        57 lavPv-~~~~~~l-~~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~  125 (370)
T PRK08818         57 FSAPI-RHTAALI-EEYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVM  125 (370)
T ss_pred             EeCCH-HHHHHHH-HHHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeE
Confidence            99993 4455555 3332   24899999999977552    12222222111     2333446532   356777789


Q ss_pred             EEccC
Q 022672          224 IVVPH  228 (294)
Q Consensus       224 iiTPH  228 (294)
                      ++||.
T Consensus       126 iltp~  130 (370)
T PRK08818        126 VVCEA  130 (370)
T ss_pred             EEeCC
Confidence            99986

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.86  E-value=8.9e-08  Score=87.64  Aligned_cols=128  Identities=16%  Similarity=0.169  Sum_probs=82.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhh---hhcCCCC--------ccccccCCHHHHh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KANGEQP--------VTWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~~l~ell  142 (294)
                      ++|+|||+|.||..+|..| ...|.+|++||+++... +..........   ...+...        .......++++.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   79 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVF-AVSGFQTTLVDIKQEQL-ESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV   79 (288)
T ss_pred             cEEEEECccHHHHHHHHHH-HhCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence            5799999999999999998 46799999999986542 22111100000   0000000        0112346788999


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeCC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  207 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gail-IN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~  207 (294)
                      ++||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-.+   ..+.+.++. .-+..++..+
T Consensus        80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence            9999999999976665555545666778999877 78877444   456555532 2334566655

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.86  E-value=1.3e-08  Score=93.79  Aligned_cols=103  Identities=30%  Similarity=0.420  Sum_probs=85.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+.||++.|.|||.+|+.+|+++ ++.|++|+++.-.+-...+...++|               .+..++|....+|+++
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~MdGf---------------~V~~m~~Aa~~gDifi  269 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMDGF---------------RVMTMEEAAKTGDIFV  269 (420)
T ss_pred             eecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhcCc---------------EEEEhHHhhhcCCEEE
Confidence            58999999999999999999997 8999999998776655555444432               3467999999999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  192 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~~  192 (294)
                      .+.-    ++++|..+.|..||+|+++.|.+.=.+ ||...|.+
T Consensus       270 T~TG----nkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~  309 (420)
T COG0499         270 TATG----NKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEE  309 (420)
T ss_pred             EccC----CcCccCHHHHHhccCCeEEecccccceeccHHHHHH
Confidence            9875    688999999999999999999987666 67666653

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.85  E-value=3.5e-08  Score=95.11  Aligned_cols=144  Identities=13%  Similarity=0.084  Sum_probs=91.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhh-------hhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-------QFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      .+|||||+|.||..+|..|+ . |.+|++||++.... +.+..+..       +.+...     +.....+..+.+++||
T Consensus         7 mkI~vIGlGyvGlpmA~~la-~-~~~V~g~D~~~~~v-e~l~~G~~~~~e~~~~~l~~~-----g~l~~t~~~~~~~~ad   78 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFG-K-SRQVVGFDVNKKRI-LELKNGVDVNLETTEEELREA-----RYLKFTSEIEKIKECN   78 (425)
T ss_pred             CeEEEECcCcchHHHHHHHh-c-CCEEEEEeCCHHHH-HHHHCcCCCCCCCCHHHHHhh-----CCeeEEeCHHHHcCCC
Confidence            68999999999999999975 3 69999999987543 32221100       000000     0011223335689999


Q ss_pred             EEEEccCCCc------cccccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc--CCcce-EEeeCCCCCCCCC
Q 022672          147 VISLHPVLDK------TTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL-KQ--NPMFR-VGLDVFEDEPYMK  214 (294)
Q Consensus       147 iV~l~~Plt~------~t~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL-~~--g~i~g-a~lDV~~~EP~~~  214 (294)
                      ++++|+|...      +...++  .+...+.+++|.++|+.|+-.+-..+.+++.+ ++  |...+ ...=+|.+||+..
T Consensus        79 vvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~  158 (425)
T PRK15182         79 FYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINP  158 (425)
T ss_pred             EEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCC
Confidence            9999999542      223444  24567889999999999999998888765544 33  22111 1112477899853


Q ss_pred             ----CCccCCCCeEE
Q 022672          215 ----PGLSEMKNAIV  225 (294)
Q Consensus       215 ----~~L~~~~nvii  225 (294)
                          ..+.+.|.++.
T Consensus       159 G~a~~~~~~~~riv~  173 (425)
T PRK15182        159 GDKKHRLTNIKKITS  173 (425)
T ss_pred             CcccccccCCCeEEE
Confidence                34667777764

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.85  E-value=5e-08  Score=89.58  Aligned_cols=117  Identities=25%  Similarity=0.245  Sum_probs=77.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH--HHhhhhhhhhhcCCCC-------cc-ccccCCHHHHhh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP-------VT-WKRASSMDEVLR  143 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~-~~~~~~l~ell~  143 (294)
                      ++|||||+|.||..+|+.| ...|++|++||++.......  .....-+.+...+...       .+ .....+. +.++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l-~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~   82 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLA-AAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR   82 (295)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence            5899999999999999998 47799999999987543210  0000000011111000       00 1122344 5679


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHH
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~  195 (294)
                      +||+|+.|+|..++.+..+-++....++++++|+ |+|.-.   ...+.+.+.
T Consensus        83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~  132 (295)
T PLN02545         83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ  132 (295)
T ss_pred             CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence            9999999999888888887777778899999887 776654   445655554

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.85  E-value=3.4e-08  Score=95.05  Aligned_cols=109  Identities=23%  Similarity=0.227  Sum_probs=75.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH------------
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV------------  141 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el------------  141 (294)
                      ++|+|||+|.||..+|..| ...|.+|++||+++.... ...         .+..+.   ....++++            
T Consensus         4 ~kI~VIGlG~~G~~~A~~L-a~~G~~V~~~D~~~~~v~-~l~---------~g~~~~---~e~~l~~~l~~~~~~g~l~~   69 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAF-ASRQKQVIGVDINQHAVD-TIN---------RGEIHI---VEPDLDMVVKTAVEGGYLRA   69 (415)
T ss_pred             cEEEEECcchhhHHHHHHH-HhCCCEEEEEeCCHHHHH-HHH---------CCCCCc---CCCCHHHHHHHHhhcCceee
Confidence            6899999999999999998 467999999998765432 211         111111   11233333            


Q ss_pred             ---hhcCCEEEEccCCC------ccccccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          142 ---LREADVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       142 ---l~~aDiV~l~~Plt------~~t~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                         +++||+|++|+|..      ++...+.  -+.....+++|+++|+.|.-.+-..+.+...+.+
T Consensus        70 ~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~  135 (415)
T PRK11064         70 TTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE  135 (415)
T ss_pred             ecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence               24799999999943      1222222  2456778999999999999888778888777765

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.85  E-value=7.5e-09  Score=95.68  Aligned_cols=83  Identities=24%  Similarity=0.332  Sum_probs=66.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+++|||||+|.||+++|++| ...|.+|.+|+++..                           .+++++++++|+|+++
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~   54 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSG---------------------------LSLAAVLADADVIVSA   54 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence            457899999999999999998 578999999997532                           3678889999999999


Q ss_pred             cCCCccccccccHHHHh-cCCCCcEEEEcCCCcc
Q 022672          152 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV  184 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~-~mk~gailIN~aRG~~  184 (294)
                      +|. +..+.++ ++... .+++++++|++++|-.
T Consensus        55 vp~-~~~~~v~-~~l~~~~~~~~~ivi~~s~gi~   86 (308)
T PRK14619         55 VSM-KGVRPVA-EQVQALNLPPETIIVTATKGLD   86 (308)
T ss_pred             CCh-HHHHHHH-HHHHHhcCCCCcEEEEeCCccc
Confidence            996 4666666 33323 4788999999988543

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.85  E-value=1.2e-08  Score=77.76  Aligned_cols=92  Identities=26%  Similarity=0.361  Sum_probs=62.0

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCC---CEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ||||||+|+||+++++.| ...|   .+|+ +++++++.. .++.+.++          ... ...+..|++++||+|++
T Consensus         1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~-~~~~~~~~----------~~~-~~~~~~~~~~~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEKA-AELAKEYG----------VQA-TADDNEEAAQEADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHH-HHHHHHCT----------TEE-ESEEHHHHHHHTSEEEE
T ss_pred             CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHHH-HHHHHhhc----------ccc-ccCChHHhhccCCEEEE
Confidence            699999999999999998 5778   8998 458877543 22222111          111 12278899999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      |+|  |+...-+.++. ....++.++|++.-|
T Consensus        68 av~--p~~~~~v~~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   68 AVK--PQQLPEVLSEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             -S---GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred             EEC--HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence            999  44333333444 666789999988643

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.83  E-value=2.6e-08  Score=94.03  Aligned_cols=139  Identities=18%  Similarity=0.126  Sum_probs=85.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|+|||+|.||+++|+.| +..|.+|.+|++...........         + .........++++++++||+|++|+|
T Consensus         1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~a~---------~-~~~~~~~~~~~~~~~~~aDlVilavP   69 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLARAL---------G-FGVIDELAADLQRAAAEADLIVLAVP   69 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHHHh---------c-CCCCcccccCHHHHhcCCCEEEEeCC
Confidence            4799999999999999998 57787777776654432111000         1 01111123578889999999999999


Q ss_pred             CCccccccccHHHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC----------CCccCCCC
Q 022672          154 LDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSEMKN  222 (294)
Q Consensus       154 lt~~t~~li~~~~l~-~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~----------~~L~~~~n  222 (294)
                      . ..+..++ ++... .+++++++++++.-+.-..+++.+.+.. ...  .++..   |.+.          ..|+.-..
T Consensus        70 ~-~~~~~vl-~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~  141 (359)
T PRK06545         70 V-DATAALL-AELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LIR--FVGGH---PMAGSHKSGVAAARADLFENAP  141 (359)
T ss_pred             H-HHHHHHH-HHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CCe--EEeeC---CcCcCchhhHHHhcHHHHCCCc
Confidence            5 4555555 34444 4889999999987664333333332211 111  22322   4432          13666677


Q ss_pred             eEEccCCCC
Q 022672          223 AIVVPHIAS  231 (294)
Q Consensus       223 viiTPHia~  231 (294)
                      .++||+-..
T Consensus       142 ~il~~~~~~  150 (359)
T PRK06545        142 WVLTPDDHT  150 (359)
T ss_pred             EEEecCCCC
Confidence            899997543

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.81  E-value=1.3e-08  Score=84.66  Aligned_cols=95  Identities=29%  Similarity=0.302  Sum_probs=63.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      |+||+|+|||||..|++-|..| +..|++|++-.+..+...+...        .     .++ ...+++|.+++||+|++
T Consensus         2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~A~--------~-----~Gf-~v~~~~eAv~~aDvV~~   66 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWEKAK--------A-----DGF-EVMSVAEAVKKADVVML   66 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHHHH--------H-----TT--ECCEHHHHHHC-SEEEE
T ss_pred             cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHHHHH--------H-----CCC-eeccHHHHHhhCCEEEE
Confidence            6899999999999999999998 7899999877665543322211        1     122 34689999999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      .+|. .....++.++....||+|+.|+ .+.|
T Consensus        67 L~PD-~~q~~vy~~~I~p~l~~G~~L~-fahG   96 (165)
T PF07991_consen   67 LLPD-EVQPEVYEEEIAPNLKPGATLV-FAHG   96 (165)
T ss_dssp             -S-H-HHHHHHHHHHHHHHS-TT-EEE-ESSS
T ss_pred             eCCh-HHHHHHHHHHHHhhCCCCCEEE-eCCc
Confidence            9993 2334445677888999999877 3444

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.79  E-value=7.5e-08  Score=87.72  Aligned_cols=137  Identities=23%  Similarity=0.231  Sum_probs=87.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEE--EEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHhhcCCEEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVIS  149 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aDiV~  149 (294)
                      -++|+|+|+|.||+++|+.| +.-|..+  +++|++.......            ...........+. .+.+.++|+|+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a------------~~lgv~d~~~~~~~~~~~~~aD~Vi   69 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAA------------LELGVIDELTVAGLAEAAAEADLVI   69 (279)
T ss_pred             CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHH------------hhcCcccccccchhhhhcccCCEEE
Confidence            36899999999999999997 5666655  6666655432211            1111212222233 67778899999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC----CCccCCCCeEE
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----PGLSEMKNAIV  225 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~----~~L~~~~nvii  225 (294)
                      +++|- ..|..++ ++....+|+|+++++++.-+---.+++.+.+.++.      .+...=|+..    .+++....+++
T Consensus        70 vavPi-~~~~~~l-~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vl  141 (279)
T COG0287          70 VAVPI-EATEEVL-KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVL  141 (279)
T ss_pred             EeccH-HHHHHHH-HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEE
Confidence            99993 5556555 55555899999999998766444444444442211      2334456532    36888888999


Q ss_pred             ccCCC
Q 022672          226 VPHIA  230 (294)
Q Consensus       226 TPHia  230 (294)
                      ||.-.
T Consensus       142 tp~~~  146 (279)
T COG0287         142 TPSEG  146 (279)
T ss_pred             cCCCC
Confidence            99644

>PLN02712 arogenate dehydrogenase

Probab=98.79  E-value=1.7e-08  Score=102.25  Aligned_cols=97  Identities=14%  Similarity=0.168  Sum_probs=71.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV  148 (294)
                      .-+-++|||||+|.||+.+|+.| +.+|++|++||++....  . ..       .     .+.....++++++ .++|+|
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~--~-A~-------~-----~Gv~~~~d~~e~~~~~aDvV  112 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSL--A-AR-------S-----LGVSFFLDPHDLCERHPDVI  112 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHH--H-HH-------H-----cCCEEeCCHHHHhhcCCCEE
Confidence            34557899999999999999998 67899999999874321  1 10       1     1122345788866 569999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      ++|+|. ..+..++..-.+..|+++++|+|++.-+
T Consensus       113 iLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK  146 (667)
T PLN02712        113 LLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVK  146 (667)
T ss_pred             EEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCc
Confidence            999994 5677777554446789999999997544

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.76  E-value=1.5e-08  Score=96.71  Aligned_cols=91  Identities=19%  Similarity=0.230  Sum_probs=66.6

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCC------chhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY------QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  142 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  142 (294)
                      ..|.||||+|||+|.+|++-|..| +-.|++|++--|.      ..+. +.        +..     .++ ...+++|++
T Consensus        32 ~~LkgKtIaIIGyGSqG~AqAlNL-rdSGvnVvvglr~~~id~~~~s~-~k--------A~~-----dGF-~v~~~~Ea~   95 (487)
T PRK05225         32 SYLKGKKIVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASW-RK--------ATE-----NGF-KVGTYEELI   95 (487)
T ss_pred             HHhCCCEEEEEccCHHHHHHhCCC-ccccceeEEeccccccccccchH-HH--------HHh-----cCC-ccCCHHHHH
Confidence            469999999999999999777765 5677777632211      1111 10        000     122 236899999


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEE
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILV  177 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI  177 (294)
                      ++||+|++++|++ . ++.+.++.+..||+|+.|.
T Consensus        96 ~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~  128 (487)
T PRK05225         96 PQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG  128 (487)
T ss_pred             HhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE
Confidence            9999999999987 3 7777899999999999886

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.75  E-value=3.7e-07  Score=83.58  Aligned_cols=152  Identities=16%  Similarity=0.120  Sum_probs=92.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhh---hhhhhhhcCCCC---------ccccccCCHHHH
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA---YGQFLKANGEQP---------VTWKRASSMDEV  141 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~l~el  141 (294)
                      ++|+|||.|.||..+|..++ ..|.+|+.||++.... +...+.   ........+...         .......++++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTA-FHGFDVTIYDISDEAL-EKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            58999999999999999974 6799999999876532 111110   000000000000         112235688899


Q ss_pred             hhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCC
Q 022672          142 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  221 (294)
Q Consensus       142 l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~  221 (294)
                      ++.||+|+.|+|...+.+.-+-++..+.++++++|+..+.+  .....+.+.+.... +..++--       ..|.+..+
T Consensus        82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~  151 (287)
T PRK08293         82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHF-------ANEIWKNN  151 (287)
T ss_pred             hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcC-------CCCCCcCC
Confidence            99999999999955445555446666778999988543322  34456666654322 2333322       23455678


Q ss_pred             CeEEccCCCCCcHHHHH
Q 022672          222 NAIVVPHIASASKWTRE  238 (294)
Q Consensus       222 nviiTPHia~~t~~~~~  238 (294)
                      .+.+.|+-.. +.++.+
T Consensus       152 lvevv~~~~t-~~~~~~  167 (287)
T PRK08293        152 TAEIMGHPGT-DPEVFD  167 (287)
T ss_pred             eEEEeCCCCC-CHHHHH
Confidence            8888887543 334333

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.73  E-value=7.1e-08  Score=91.61  Aligned_cols=90  Identities=16%  Similarity=0.248  Sum_probs=67.5

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ..++|+||| +|.||+++|+.| +..|.+|.+||+...                           .+.++++++||+|++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~~~~---------------------------~~~~~~~~~aDlVil  148 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQDDW---------------------------DRAEDILADAGMVIV  148 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCCCcc---------------------------hhHHHHHhcCCEEEE
Confidence            458999999 999999999998 678999999997421                           246678899999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE  192 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~  192 (294)
                      |+|.. .+..++ ++... +++|+++++++..+..-..++.+
T Consensus       149 avP~~-~~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~  187 (374)
T PRK11199        149 SVPIH-LTEEVI-ARLPP-LPEDCILVDLTSVKNAPLQAMLA  187 (374)
T ss_pred             eCcHH-HHHHHH-HHHhC-CCCCcEEEECCCccHHHHHHHHH
Confidence            99954 445555 44444 89999999997654333334433

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.73  E-value=1.7e-07  Score=84.60  Aligned_cols=103  Identities=30%  Similarity=0.359  Sum_probs=72.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC----EEEEE-cCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ++|||||+|.||+++++.|. ..|.    +|++| |++.... +.+.        ..     +.....+..+++++||+|
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~-~~g~~~~~~i~v~~~r~~~~~-~~~~--------~~-----g~~~~~~~~e~~~~aDvV   65 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLV-ASGVVPPSRISTADDSNPARR-DVFQ--------SL-----GVKTAASNTEVVKSSDVI   65 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHH-HCCCCCcceEEEEeCCCHHHH-HHHH--------Hc-----CCEEeCChHHHHhcCCEE
Confidence            47999999999999999984 5566    88888 7765432 2211        11     122346788889999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  195 (294)
                      ++|+| ......++ .+....++++.++|++.-|  +..+.+.+.+.
T Consensus        66 il~v~-~~~~~~vl-~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~  108 (266)
T PLN02688         66 ILAVK-PQVVKDVL-TELRPLLSKDKLLVSVAAG--ITLADLQEWAG  108 (266)
T ss_pred             EEEEC-cHHHHHHH-HHHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence            99997 45555555 4555667889999988655  46666665553

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.72  E-value=5.3e-08  Score=92.32  Aligned_cols=103  Identities=18%  Similarity=0.358  Sum_probs=74.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+.++++.|+|+|.+|+.+++.+ +.+|++|.++|++.... +.....++..+      ........++.+.++++|+|+
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~~-~~l~~~~g~~v------~~~~~~~~~l~~~l~~aDvVI  235 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMA-NGLGATVTILDINIDRL-RQLDAEFGGRI------HTRYSNAYEIEDAVKRADLLI  235 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHHhcCcee------EeccCCHHHHHHHHccCCEEE
Confidence            36788999999999999999996 79999999999876432 22111111000      000111235778889999999


Q ss_pred             EccCCC-ccccccccHHHHhcCCCCcEEEEcC
Q 022672          150 LHPVLD-KTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       150 l~~Plt-~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .+++.+ ..+..+++++.++.||+++++||++
T Consensus       236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             EccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            998642 3356688999999999999999986

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.70  E-value=6.5e-08  Score=88.56  Aligned_cols=80  Identities=18%  Similarity=0.248  Sum_probs=66.5

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||+|+|||.| .||+.+|.+| ...|++|+.|+++.                            .++.++.++||
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L-~~~gatVtv~~~~t----------------------------~~l~e~~~~AD  204 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALL-LQAHCSVTVVHSRS----------------------------TDAKALCRQAD  204 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHH-HHCCCEEEEECCCC----------------------------CCHHHHHhcCC
Confidence            568999999999996 9999999998 57899999997542                            26889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+++++..    +++....   +|+|+++||+|.-.
T Consensus       205 IVIsavg~~----~~v~~~~---ik~GaiVIDvgin~  234 (301)
T PRK14194        205 IVVAAVGRP----RLIDADW---LKPGAVVIDVGINR  234 (301)
T ss_pred             EEEEecCCh----hcccHhh---ccCCcEEEEecccc
Confidence            999999843    4555554   79999999998544

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.69  E-value=6.5e-07  Score=82.08  Aligned_cols=128  Identities=22%  Similarity=0.258  Sum_probs=79.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhh---hhhcCCCC--------ccccccCCHHHHh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKANGEQP--------VTWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~l~ell  142 (294)
                      ++|+|||.|.||..+|..|+ ..|.+|++||++.+... ...+.....   ....+...        .......+++ .+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~-~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   81 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCA-LAGYDVLLNDVSADRLE-AGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DL   81 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hh
Confidence            57999999999999999984 67999999999865432 111100000   00111100        0112345665 47


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  208 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~  208 (294)
                      ++||+|+.|+|...+.+..+-++....++++++|+ |+|.-.   ..++.+.+.. .-+..++-.+.
T Consensus        82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~-~~r~~g~h~~~  144 (292)
T PRK07530         82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDR-PERFIGIHFMN  144 (292)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEeeccC
Confidence            89999999999765655555466777889999998 665543   3467666532 12233444444

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.67  E-value=4.1e-07  Score=79.07  Aligned_cols=110  Identities=20%  Similarity=0.321  Sum_probs=79.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADV  147 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDi  147 (294)
                      .++.||+++|+|+|+||+.+|+.| ..+|++|+++|++.... ..+.+.+       +     .... +.++++. +||+
T Consensus        24 ~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~~-~~~~~~~-------g-----~~~v-~~~~l~~~~~Dv   88 (200)
T cd01075          24 DSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEAV-ARAAELF-------G-----ATVV-APEEIYSVDADV   88 (200)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HHHHHHc-------C-----CEEE-cchhhccccCCE
Confidence            479999999999999999999998 68999999999876432 2221111       1     1111 3355554 7999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ++.|..     .++++++.++.|+. .+++.-+-+.+-| ..-.+.|++..+.
T Consensus        89 ~vp~A~-----~~~I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          89 FAPCAL-----GGVINDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             EEeccc-----ccccCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            987765     46889999999974 4788888887766 4556667776654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.66  E-value=4.5e-07  Score=82.41  Aligned_cols=101  Identities=18%  Similarity=0.280  Sum_probs=66.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ++|+|||+|.||+++|+.|. ..|  .+|++||++..... ..        ...+..    ....+.+++. +||+|++|
T Consensus         1 m~I~iIG~G~mG~sla~~l~-~~g~~~~v~~~d~~~~~~~-~~--------~~~g~~----~~~~~~~~~~-~aD~Vila   65 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALK-EKGLISKVYGYDHNELHLK-KA--------LELGLV----DEIVSFEELK-KCDVIFLA   65 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHH-hcCCCCEEEEEcCCHHHHH-HH--------HHCCCC----cccCCHHHHh-cCCEEEEe
Confidence            37999999999999999984 445  58999998765421 11        111111    1124667765 59999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      +|. ..+..++ .+... +++++++++++.-    ...+.+.+.+
T Consensus        66 vp~-~~~~~~~-~~l~~-l~~~~iv~d~gs~----k~~i~~~~~~  103 (275)
T PRK08507         66 IPV-DAIIEIL-PKLLD-IKENTTIIDLGST----KAKIIESVPK  103 (275)
T ss_pred             CcH-HHHHHHH-HHHhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence            994 3444444 45556 8899999997542    3445555543

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.65  E-value=4.2e-07  Score=87.33  Aligned_cols=117  Identities=18%  Similarity=0.220  Sum_probs=75.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhh--------hhhhhcCCCCcc-ccccCCHHHHhhc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVT-WKRASSMDEVLRE  144 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~l~ell~~  144 (294)
                      ++|||||+|.||..+|..|+ ..|.+|++||++.... +.+..+..        +.+....  ..+ .....++++++++
T Consensus         1 mkI~vIGlG~~G~~lA~~La-~~G~~V~~~d~~~~~v-~~l~~g~~~~~e~~l~~~~~~~~--~~g~l~~~~~~~~~~~~   76 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLA-DLGHEVTGVDIDQEKV-DKLNKGKSPIYEPGLDELLAKAL--AAGRLRATTDYEDAIRD   76 (411)
T ss_pred             CEEEEECCCchhHHHHHHHH-hcCCeEEEEECCHHHH-HHhhcCCCCCCCCCHHHHHHHhh--hcCCeEEECCHHHHHhh
Confidence            37999999999999999984 6899999999876543 21111000        0000000  001 2234578888999


Q ss_pred             CCEEEEccCCCccc------cccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022672          145 ADVISLHPVLDKTT------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL  194 (294)
Q Consensus       145 aDiV~l~~Plt~~t------~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL  194 (294)
                      ||+|++|+|.....      ..+.  -......+++|.++|+.|.-.+-..+.+.+.+
T Consensus        77 advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~  134 (411)
T TIGR03026        77 ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI  134 (411)
T ss_pred             CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence            99999999953321      1122  24556778999999999876666666676444

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.64  E-value=1.5e-07  Score=85.72  Aligned_cols=106  Identities=17%  Similarity=0.241  Sum_probs=73.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .++|||||+|.||+++++.|. ..|    .+|++||++.....+.+...+            +.....+..+++++||+|
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~-~~g~~~~~~v~v~~r~~~~~~~~l~~~~------------g~~~~~~~~e~~~~aDvV   69 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLL-HANVVKGEQITVSNRSNETRLQELHQKY------------GVKGTHNKKELLTDANIL   69 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCCHHHHHHHHHhc------------CceEeCCHHHHHhcCCEE
Confidence            468999999999999999984 444    678999987543333322111            122345778889999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  195 (294)
                      ++++| ..+....+ .+....++++.++|++.-|  +..+.+.+.+.
T Consensus        70 ilav~-p~~~~~vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~  112 (279)
T PRK07679         70 FLAMK-PKDVAEAL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQ  112 (279)
T ss_pred             EEEeC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            99999 34444444 4555667889999998654  35566666554

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.64  E-value=3.2e-07  Score=85.47  Aligned_cols=115  Identities=18%  Similarity=0.194  Sum_probs=75.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh-hhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-GQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||+|.||..+|.+|+ ..|.+|.+|+++.... +.+.... ..................++++.++.+|+|++++
T Consensus         5 m~I~iIG~G~mG~~ia~~L~-~~G~~V~~~~r~~~~~-~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v   82 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAA-SKGVPVRLWARRPEFA-AALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAV   82 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEEC
Confidence            57999999999999999984 6799999999975432 2211100 0000000000001224468888899999999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHc
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRG-PVID--EVALVEHLKQ  196 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG-~~vd--~~aL~~aL~~  196 (294)
                      |.. .+     ++.++.++++.++|+++.| ..-+  ...+.+.+.+
T Consensus        83 ~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         83 PSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             chH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            954 22     6677889999999999997 4332  4455565544

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.62  E-value=7e-07  Score=73.67  Aligned_cols=115  Identities=17%  Similarity=0.228  Sum_probs=76.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.+++++|+|.|.||+.+++.|+ ..| .+|.++|++.... +.+.+.++.       ... .....+.+++++++|+|
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~-~~g~~~v~v~~r~~~~~-~~~~~~~~~-------~~~-~~~~~~~~~~~~~~Dvv   85 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALA-ELGAAKIVIVNRTLEKA-KALAERFGE-------LGI-AIAYLDLEELLAEADLI   85 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHHHhh-------ccc-ceeecchhhccccCCEE
Confidence            466889999999999999999984 564 7899999876543 222221110       000 01235677888999999


Q ss_pred             EEccCCCcc-cc-ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 022672          149 SLHPVLDKT-TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       149 ~l~~Plt~~-t~-~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i  199 (294)
                      ++++|.... .. ..+..   ..++++.+++|++..+...  .|.+.+++..+
T Consensus        86 i~~~~~~~~~~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~  133 (155)
T cd01065          86 INTTPVGMKPGDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGA  133 (155)
T ss_pred             EeCcCCCCCCCCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence            999996543 11 22332   2368999999998765443  77777776543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.61  E-value=2.3e-07  Score=84.39  Aligned_cols=111  Identities=17%  Similarity=0.174  Sum_probs=77.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhc-CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ..+|||||+|.||+.+++.|.+. .++++. +||+.+... +.+.+.+       +.    .....+++++++++|+|++
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~a~~~-------g~----~~~~~~~eell~~~D~Vvi   73 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADFIWGL-------RR----PPPVVPLDQLATHADIVVE   73 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHHHHhc-------CC----CcccCCHHHHhcCCCEEEE
Confidence            47899999999999999998543 588876 678765432 2221111       10    1234689999999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      |+|..  ++.-+.   .+.++.|.-++..+.|.+.+.++|.++.+++...
T Consensus        74 ~tp~~--~h~e~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         74 AAPAS--VLRAIV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             CCCcH--HHHHHH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence            99942  332222   3345667667778899888889999988876543

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.60  E-value=1.9e-07  Score=78.01  Aligned_cols=105  Identities=19%  Similarity=0.286  Sum_probs=65.4

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHh-hhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT-AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      +|+|+|.|++|.++|..| ...|.+|..|.+..+.. +...+ ..+......-..+.......++++.++++|+|++++|
T Consensus         1 KI~ViGaG~~G~AlA~~l-a~~g~~V~l~~~~~~~~-~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP   78 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALL-ADNGHEVTLWGRDEEQI-EEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP   78 (157)
T ss_dssp             EEEEESSSHHHHHHHHHH-HHCTEEEEEETSCHHHH-HHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred             CEEEECcCHHHHHHHHHH-HHcCCEEEEEeccHHHH-HHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence            689999999999999997 57889999999976432 22111 1000000000001122345789999999999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      . ...+. +-++....++++..+|++..|=
T Consensus        79 s-~~~~~-~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   79 S-QAHRE-VLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             G-GGHHH-HHHHHTTTSHTT-EEEETS-SE
T ss_pred             H-HHHHH-HHHHHhhccCCCCEEEEecCCc
Confidence            3 22233 3366667778899999998763

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.60  E-value=1.9e-07  Score=84.92  Aligned_cols=80  Identities=18%  Similarity=0.238  Sum_probs=67.5

Q ss_pred             CcccCCCEEEEEcCChH-HHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~I-G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||.|.+ |+.+|.+| ...|++|+.+..+                            ..++.+.+++||
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL-~~~~atVt~~hs~----------------------------t~~l~~~~~~AD  203 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLL-LQAGATVTICHSK----------------------------TRDLAAHTRQAD  203 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHH-HHCCCEEEEecCC----------------------------CCCHHHHhhhCC
Confidence            45799999999999998 99999998 6899999987532                            136889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+++++    +.++++.   ..+|+|+++||+|.-.
T Consensus       204 IVV~avG----~~~~i~~---~~ik~gavVIDVGin~  233 (285)
T PRK14189        204 IVVAAVG----KRNVLTA---DMVKPGATVIDVGMNR  233 (285)
T ss_pred             EEEEcCC----CcCccCH---HHcCCCCEEEEccccc
Confidence            9999998    4668887   4579999999998654

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.59  E-value=6.6e-07  Score=81.60  Aligned_cols=119  Identities=22%  Similarity=0.271  Sum_probs=75.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHH--HhhhhhhhhhcCCCCc--------cccccCCHHHHhh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VTAYGQFLKANGEQPV--------TWKRASSMDEVLR  143 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~  143 (294)
                      ++|+|||.|.||..+|..+ ...|.+|++||+++.......  ....-+.+...+....        ......++++ ++
T Consensus         4 ~kI~VIG~G~mG~~ia~~l-a~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~   81 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVC-AVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK   81 (282)
T ss_pred             cEEEEEccCHHHHHHHHHH-HHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence            5799999999999999998 467999999998875432100  0000000111111000        1122345654 78


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      +||+|+.|+|...+.+.-+-++..+.++++++++...-|  +....|.+.+..
T Consensus        82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~  132 (282)
T PRK05808         82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR  132 (282)
T ss_pred             cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence            999999999966665555556666778999988544333  566678787743

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.59  E-value=3e-07  Score=77.73  Aligned_cols=82  Identities=20%  Similarity=0.262  Sum_probs=67.9

Q ss_pred             cccCCCEEEEEcCChH-HHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           69 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        69 ~~l~gktvGIIGlG~I-G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .++.|+++.|||.|.+ |..+|+.| ...|++|+..+++.                            .++.+.++++|+
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDi   90 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADI   90 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCE
Confidence            3699999999999996 88899998 67898998887642                            257788999999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  186 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  186 (294)
                      |+.+++. +  + ++.++.   ++++.++||+|...-+|
T Consensus        91 VIsat~~-~--~-ii~~~~---~~~~~viIDla~prdvd  122 (168)
T cd01080          91 VIVAVGK-P--G-LVKGDM---VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             EEEcCCC-C--c-eecHHH---ccCCeEEEEccCCCccc
Confidence            9999983 2  2 788875   57899999999888777

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.58  E-value=7.3e-08  Score=77.63  Aligned_cols=94  Identities=20%  Similarity=0.293  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ...+|||||.|++|..+++.| +..|.+|.++-.+.....++....            .+.....+++|+++++|+++++
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~sa~~a~~~------------~~~~~~~~~~~~~~~aDlv~ia   75 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPASAERAAAF------------IGAGAILDLEEILRDADLVFIA   75 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-HHHHHHC--------------TT-----TTGGGCC-SEEEE-
T ss_pred             CccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCcccccccccc------------cccccccccccccccCCEEEEE
Confidence            346899999999999999998 688999987643332222221110            1112335778899999999999


Q ss_pred             cCCCccccccccHHHHhc--CCCCcEEEEcC
Q 022672          152 PVLDKTTYHLINKERLAT--MKKEAILVNCS  180 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~--mk~gailIN~a  180 (294)
                      +|  ++...-+.+++-..  .++|.+++.+|
T Consensus        76 vp--DdaI~~va~~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   76 VP--DDAIAEVAEQLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             S---CCHHHHHHHHHHCC--S-TT-EEEES-
T ss_pred             ec--hHHHHHHHHHHHHhccCCCCcEEEECC
Confidence            99  34444444555554  78999999995

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.57  E-value=2.5e-07  Score=83.63  Aligned_cols=95  Identities=22%  Similarity=0.395  Sum_probs=76.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+.||.+.|.|||.+|+..|+.| ++||.+|++....+-..+....++               ..+.+++|..++.|+++
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMeG---------------~~V~tm~ea~~e~difV  274 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAMEG---------------YEVTTLEEAIREVDIFV  274 (434)
T ss_pred             eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhhc---------------cEeeeHHHhhhcCCEEE
Confidence            57899999999999999999998 899999999765543333332222               13568999999999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                      .+.-    .+.+|..+.|.+||+++++.|++.-.+
T Consensus       275 TtTG----c~dii~~~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  275 TTTG----CKDIITGEHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             EccC----CcchhhHHHHHhCcCCcEEeccccccc
Confidence            8764    578899999999999999999976554

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.57  E-value=1.5e-06  Score=79.61  Aligned_cols=130  Identities=17%  Similarity=0.259  Sum_probs=83.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHH---HHHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE---KFVTAYGQFLKANGEQP--------VTWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell  142 (294)
                      ++|||||.|.||..+|..++ ..|.+|+.||+.++....   ........ ....+...        .......++ +.+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~-~~~~g~~~~~~~~~~~~~l~~~~~~-~~~   82 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIEKSLER-AVSRGKLTERERDAALARLRFTTDL-GDF   82 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHH-HHhcccCChhhHHHHHhCeEeeCCH-HHh
Confidence            48999999999999999874 679999999998765321   11111111 11112110        011234677 457


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  209 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~m-k~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~  209 (294)
                      ++||+|+-|+|.+.+.+..+-.+.-+.+ +++++|++.+.+-.  ..++..+++. .-+..++..|.+
T Consensus        83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~--~~~la~~~~~-~~r~~g~hf~~P  147 (286)
T PRK07819         83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIP--IMKLAAATKR-PGRVLGLHFFNP  147 (286)
T ss_pred             CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCC--HHHHHhhcCC-CccEEEEecCCC
Confidence            9999999999988888877766555555 89999988765544  4444455432 223445555553

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.57  E-value=7.1e-07  Score=85.17  Aligned_cols=138  Identities=16%  Similarity=0.258  Sum_probs=87.1

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhh--------hhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +|+|||+|.||..+|..++  .|.+|++||++.... +...++..        +.+...   ........+..+.+++||
T Consensus         2 kI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~kv-~~l~~g~~~~~e~~l~~~l~~~---~~~l~~t~~~~~~~~~ad   75 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA--QNHEVVALDILPSRV-AMLNDRISPIVDKEIQQFLQSD---KIHFNATLDKNEAYRDAD   75 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHHH-HHHHcCCCCCCCcCHHHHHHhC---CCcEEEecchhhhhcCCC
Confidence            6999999999999997763  489999999987543 22211100        000000   111222234677889999


Q ss_pred             EEEEccCCCcccc-cccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC---
Q 022672          147 VISLHPVLDKTTY-HLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK---  214 (294)
Q Consensus       147 iV~l~~Plt~~t~-~li~--------~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~---  214 (294)
                      +|++|+|..-+-+ +.++        ++... +++|.++|+.|+-.+=-.+.+.+.+.+..+      +|.+|.+..   
T Consensus        76 ~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a  148 (388)
T PRK15057         76 YVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKA  148 (388)
T ss_pred             EEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcc
Confidence            9999999541211 1111        23344 799999999999998888888887765332      246776532   


Q ss_pred             -CCccCCCCeEE
Q 022672          215 -PGLSEMKNAIV  225 (294)
Q Consensus       215 -~~L~~~~nvii  225 (294)
                       +.+...|.|++
T Consensus       149 ~~d~~~p~rvv~  160 (388)
T PRK15057        149 LYDNLHPSRIVI  160 (388)
T ss_pred             cccccCCCEEEE
Confidence             24555556653

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.57  E-value=2.5e-07  Score=75.32  Aligned_cols=105  Identities=23%  Similarity=0.300  Sum_probs=72.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ++.|+++.|||.|.+|+.++..| ...|++ |+.++|+.+.. +.+...+       +..........++.+.+.++|+|
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~ra-~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div   79 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPERA-EALAEEF-------GGVNIEAIPLEDLEEALQEADIV   79 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHHH-HHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHHH-HHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence            68999999999999999999998 577886 99999986542 2322221       11222233456777889999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCc-EEEEcCCCcccC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGPVID  186 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~ga-ilIN~aRG~~vd  186 (294)
                      +.+.|..   ...+.++.++..++.. ++++.|...-|+
T Consensus        80 I~aT~~~---~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~  115 (135)
T PF01488_consen   80 INATPSG---MPIITEEMLKKASKKLRLVIDLAVPRDID  115 (135)
T ss_dssp             EE-SSTT---STSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred             EEecCCC---CcccCHHHHHHHHhhhhceeccccCCCCC
Confidence            9999853   3377888887665543 888887654333

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.56  E-value=2.7e-07  Score=83.91  Aligned_cols=104  Identities=21%  Similarity=0.301  Sum_probs=72.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ++|||||+|+||+++++.|. ..|    .+|++||++.... +.+.+.+       +     .....+..+++++||+|+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~-~~g~~~~~~I~v~~r~~~~~-~~l~~~~-------g-----~~~~~~~~e~~~~aDiIi   68 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMI-NKNIVSPDQIICSDLNVSNL-KNASDKY-------G-----ITITTNNNEVANSADILI   68 (272)
T ss_pred             CeEEEECccHHHHHHHHHHH-HCCCCCCceEEEECCCHHHH-HHHHHhc-------C-----cEEeCCcHHHHhhCCEEE
Confidence            47999999999999999874 444    3799999876542 2221111       1     123457788899999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  195 (294)
                      +|+| ......++ ++....++++.++|++.=|  ++.+.|.+.+.
T Consensus        69 Lavk-P~~~~~vl-~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         69 LSIK-PDLYSSVI-NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             EEeC-hHHHHHHH-HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence            9999 34455544 4455557888999999777  55666666653

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.54  E-value=3.6e-07  Score=84.56  Aligned_cols=108  Identities=16%  Similarity=0.198  Sum_probs=70.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh-hhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-GQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||+|.||..+|..| ...|.+|.+|+++.... +.+.... ............+.....++++.++++|+|++|+
T Consensus         2 mkI~iiG~G~mG~~~a~~L-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v   79 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVL-ARNGHDVTLWARDPEQA-AEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAV   79 (325)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeC
Confidence            4799999999999999998 46799999999875432 2211100 0000000000011233467888899999999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI  185 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v  185 (294)
                      |. ..+..++ .+....+++++++|+++.|--.
T Consensus        80 ~~-~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         80 PS-QALREVL-KQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             CH-HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence            94 4555555 4555667889999999765433

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.53  E-value=1.5e-06  Score=85.64  Aligned_cols=131  Identities=22%  Similarity=0.328  Sum_probs=87.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell  142 (294)
                      ++|||||+|.||+.+|..++ ..|++|+.||++.......   ....+.. ....+...        .......++++ +
T Consensus         8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~-~   84 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDARAGAAAAARDGIAARLAK-LVEKGKLTAEQADAALARLRPVEALAD-L   84 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence            57999999999999999974 6799999999987643221   1111111 11112100        01233467766 5


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  211 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gail-IN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  211 (294)
                      .+||+|+.++|...+.+..+-.+.-+.++++++| +|+|.-++   .+|.+++.. .-+..++..|.+-|
T Consensus        85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~Pa~  150 (507)
T PRK08268         85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNPVP  150 (507)
T ss_pred             CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCCcc
Confidence            6999999999988888877766666667899999 59977665   366666643 22346667776444

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.51  E-value=3.4e-06  Score=77.94  Aligned_cols=117  Identities=15%  Similarity=0.192  Sum_probs=70.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhh----hhhhhhhcCCC---CccccccCCHHHHhhcCC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANGEQ---PVTWKRASSMDEVLREAD  146 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~l~ell~~aD  146 (294)
                      ++|+|||+|.||..+|..| ...|.+|++||++.... +.....    .+. .......   ........++++.+++||
T Consensus         5 ~~I~vIGaG~mG~~iA~~l-~~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~aD   81 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALF-ARKGLQVVLIDVMEGAL-ERARGVIERALGV-YAPLGIASAGMGRIRMEAGLAAAVSGAD   81 (311)
T ss_pred             cEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHHHHHHHH-hhhcccHHHHhhceEEeCCHHHHhccCC
Confidence            5799999999999999998 46799999999876542 221110    000 0000000   000123457888899999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  195 (294)
                      +|++|+|...+...-+-.+.-..++++++++...-|  +....+.+.+.
T Consensus        82 lVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~  128 (311)
T PRK06130         82 LVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVT  128 (311)
T ss_pred             EEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence            999999954433333324444456777777543333  34557777664

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.50  E-value=8.8e-07  Score=80.74  Aligned_cols=106  Identities=17%  Similarity=0.273  Sum_probs=71.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+|+|||+|.||+++++.|. ..|    .+|++|+++.......+...+         .  ......+..++++++|+|+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~-~~g~~~~~~V~~~~r~~~~~~~~l~~~~---------~--~~~~~~~~~e~~~~aDvVi   69 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLL-ETEVATPEEIILYSSSKNEHFNQLYDKY---------P--TVELADNEAEIFTKCDHSF   69 (277)
T ss_pred             CEEEEECccHHHHHHHHHHH-HCCCCCcccEEEEeCCcHHHHHHHHHHc---------C--CeEEeCCHHHHHhhCCEEE
Confidence            47999999999999999974 445    689999886543222211110         0  0112357788899999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  195 (294)
                      +|+| ......++ ++....++++..+|.+.-|  +..+.|.+.+.
T Consensus        70 lavp-p~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~  111 (277)
T PRK06928         70 ICVP-PLAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP  111 (277)
T ss_pred             EecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            9999 23333333 3444456788899998877  66677777663

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.50  E-value=1.1e-06  Score=77.21  Aligned_cols=116  Identities=22%  Similarity=0.297  Sum_probs=90.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hcCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l  150 (294)
                      +++|.||+|+||..++++| ..-|.+|++||.++....+.         ...+     .....+++|++   ....+|.+
T Consensus         1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~av~~~---------~~~g-----a~~a~sl~el~~~L~~pr~vWl   65 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTAVEEL---------KDEG-----ATGAASLDELVAKLSAPRIVWL   65 (300)
T ss_pred             CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHHHHHH---------HhcC-----CccccCHHHHHHhcCCCcEEEE
Confidence            4799999999999999998 68899999999987654321         1112     23346777664   56789999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  207 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~  207 (294)
                      .+|..+-|..+| +++-..|.+|-++|+-+...--|.....+.|++..|.  .+||=
T Consensus        66 MvPag~it~~vi-~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G  119 (300)
T COG1023          66 MVPAGDITDAVI-DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG  119 (300)
T ss_pred             EccCCCchHHHH-HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence            999876666666 6677889999999999998888888888999887765  46663

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.50  E-value=2.7e-06  Score=83.76  Aligned_cols=119  Identities=16%  Similarity=0.117  Sum_probs=75.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhh---hhhhhh---hcCCCCcc-ccccCCHHHHhhcCC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA---YGQFLK---ANGEQPVT-WKRASSMDEVLREAD  146 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~---~~~~~~---~~~~~~~~-~~~~~~l~ell~~aD  146 (294)
                      ++|||||+|.||..+|..|+ ..|.+|++||+++.... .+.+.   ......   .......+ .....++++++++||
T Consensus         5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD   82 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPHPEAER-IIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGAD   82 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCC
Confidence            58999999999999999984 67999999999875432 11100   000000   00000001 234578989999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      +|+.++|...+.+..+-++.-+.++++++| .++..++ ....|.+.+..
T Consensus        83 ~Vieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~  130 (495)
T PRK07531         83 WIQESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH  130 (495)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence            999999976655654444555667888755 4444443 35577776643

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.49  E-value=6.7e-06  Score=75.34  Aligned_cols=129  Identities=18%  Similarity=0.248  Sum_probs=79.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHH---HHHh---hhhhhhhhcCCCC--------ccccccCCHH
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE---KFVT---AYGQFLKANGEQP--------VTWKRASSMD  139 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---~~~~---~~~~~~~~~~~~~--------~~~~~~~~l~  139 (294)
                      ++|+|||.|.||..+|..+ ...|++|+.||++......   ....   .... ....+...        .......++ 
T Consensus         4 ~~I~ViGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~-~~~~g~~~~~~~~~~~~~i~~~~~~-   80 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVF-ARTGYDVTIVDVSEEILKNAMELIESGPYGLRN-LVEKGKMSEDEAKAIMARIRTSTSY-   80 (291)
T ss_pred             cEEEEECccHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHH-HHHcCCCCHHHHHHHHhCcEeeCCH-
Confidence            5899999999999999997 4779999999998754321   0000   0000 00011100        001122455 


Q ss_pred             HHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672          140 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  208 (294)
Q Consensus       140 ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~  208 (294)
                      +.+++||+|+.++|...+.+.-+-++.-+.++++++|++...|  +....+.+.+.. .-+..++.-+.
T Consensus        81 ~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~  146 (291)
T PRK06035         81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFN  146 (291)
T ss_pred             HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCC
Confidence            5679999999999965544444445555678899999877666  455667777643 22334444443

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.49  E-value=6.9e-07  Score=91.92  Aligned_cols=138  Identities=17%  Similarity=0.167  Sum_probs=88.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ++|+|||+|.||+++|+.| +..|  .+|++||++..... ..        ...+..   .....+++++++++|+|++|
T Consensus         4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~~-~a--------~~~g~~---~~~~~~~~~~~~~aDvVila   70 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSLE-LA--------VSLGVI---DRGEEDLAEAVSGADVIVLA   70 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHHH-HH--------HHCCCC---CcccCCHHHHhcCCCEEEEC
Confidence            6899999999999999997 5666  58999998765421 11        111111   01235688889999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC----------CCCccCCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMK  221 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~----------~~~L~~~~  221 (294)
                      +|. .....++ ++....++++.++++++..+..-.+.+.+.+....     ..+..+=|..          .+.|+.-.
T Consensus        71 vp~-~~~~~vl-~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~-----~r~~~~hPm~G~~~~g~~~a~~~l~~~~  143 (735)
T PRK14806         71 VPV-LAMEKVL-ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP-----AGFVPGHPIAGSEKSGVHAANADLFRNH  143 (735)
T ss_pred             CCH-HHHHHHH-HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC-----CeEEecCCcCcCCcchhhhhhhHHhCCC
Confidence            994 2333333 34445678899999998755333445555543311     2223333421          12477778


Q ss_pred             CeEEccCCCC
Q 022672          222 NAIVVPHIAS  231 (294)
Q Consensus       222 nviiTPHia~  231 (294)
                      +++++|+...
T Consensus       144 ~~~~~~~~~~  153 (735)
T PRK14806        144 KVILTPLAET  153 (735)
T ss_pred             eEEEECCCCC
Confidence            8999997554

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.49  E-value=5.7e-07  Score=82.43  Aligned_cols=80  Identities=16%  Similarity=0.231  Sum_probs=64.7

Q ss_pred             CcccCCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||+|+||| .|.+|+.+|++| ..-|+.|++|+.+.                            .++++++++||
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L-~~~g~tVtv~~~rT----------------------------~~l~e~~~~AD  203 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLL-LAANATVTIAHSRT----------------------------RDLPAVCRRAD  203 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHH-HhCCCEEEEECCCC----------------------------CCHHHHHhcCC
Confidence            4579999999999 999999999998 57799999995321                            25788999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+++++...    ++....   +|+|+++||+|--.
T Consensus       204 IVIsavg~~~----~v~~~~---lk~GavVIDvGin~  233 (296)
T PRK14188        204 ILVAAVGRPE----MVKGDW---IKPGATVIDVGINR  233 (296)
T ss_pred             EEEEecCChh----hcchhe---ecCCCEEEEcCCcc
Confidence            9999998432    454443   89999999997544

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.48  E-value=4.3e-06  Score=77.33  Aligned_cols=119  Identities=21%  Similarity=0.199  Sum_probs=71.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHH---HhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP--------VTWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~~l~ell  142 (294)
                      ++|+|||+|.||.++|..| ...|.+|++||++........   ...... +...+..+        .......++++.+
T Consensus         3 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~v~d~~~~~~~~~~~~~~~~l~~-l~~~g~~~~~~~~~~~~~i~~~~~~~~a~   80 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVF-ARAGHEVRLWDADPAAAAAAPAYIAGRLED-LAAFDLLDGEAPDAVLARIRVTDSLADAV   80 (308)
T ss_pred             cEEEEECccHHHHHHHHHH-HHCCCeeEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence            4799999999999999998 467999999999864321100   000000 11111100        0012446888999


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ++||+|+.++|...+.+..+-.+.-+..+++.++...+.  ......+.+.+..
T Consensus        81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts--~~~~~~la~~~~~  132 (308)
T PRK06129         81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTS--ALLASAFTEHLAG  132 (308)
T ss_pred             CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC--CCCHHHHHHhcCC
Confidence            999999999996544444333333334455555543333  3346667777644

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.46  E-value=1.2e-06  Score=86.29  Aligned_cols=133  Identities=20%  Similarity=0.265  Sum_probs=87.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCCC--------ccccccCCHHHH
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEV  141 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~l~el  141 (294)
                      =++|||||+|.||+.+|..++ ..|++|+.||++.......   ....+.. ....+...        .......++++ 
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~-   81 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIRAEALARAIAGIEARLNS-LVTKGKLTAEECERTLKRLIPVTDLHA-   81 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHhccEEeCCHHH-
Confidence            357999999999999999984 7799999999987643211   0011111 11112110        01223467766 


Q ss_pred             hhcCCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCC
Q 022672          142 LREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  212 (294)
Q Consensus       142 l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  212 (294)
                      +++||+|+.++|...+.+..+-.+.-+.++++++|. |+|.-++   ..+.+.+.. ..+..++.-|.+-|.
T Consensus        82 l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv  149 (503)
T TIGR02279        82 LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV  149 (503)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence            469999999999887877776666667788888876 7765443   467777643 445677777775553

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.45  E-value=8.2e-07  Score=80.81  Aligned_cols=80  Identities=21%  Similarity=0.310  Sum_probs=65.3

Q ss_pred             CcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||+++|||. |.+|+.+|.+| ...|++|+.|...                            ..++++.+++||
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL-~~~gatVtv~~s~----------------------------t~~l~~~~~~AD  203 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLL-LDKNATVTLTHSR----------------------------TRNLAEVARKAD  203 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCC
Confidence            56899999999999 99999999998 5789999998321                            136889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+++++.    .+++....   +|+|+++||+|--.
T Consensus       204 IVI~avg~----~~~v~~~~---ik~GavVIDvgin~  233 (284)
T PRK14179        204 ILVVAIGR----GHFVTKEF---VKEGAVVIDVGMNR  233 (284)
T ss_pred             EEEEecCc----cccCCHHH---ccCCcEEEEeccee
Confidence            99999984    33455544   89999999997544

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.39  E-value=2.5e-07  Score=81.15  Aligned_cols=136  Identities=13%  Similarity=0.183  Sum_probs=89.6

Q ss_pred             CcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHh-hcCCCEEEE-Ec
Q 022672           27 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YD  104 (294)
Q Consensus        27 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~-~~~g~~V~~-~d  104 (294)
                      ...+.++|.+..++...|++..            |.         ..++++|||+|.+|+.+++.+. ...|+++++ +|
T Consensus        59 ~G~~~~gy~v~~l~~~~~~~l~------------~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D  117 (213)
T PRK05472         59 FGKRGVGYNVEELLEFIEKILG------------LD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFD  117 (213)
T ss_pred             cCCCCCCeeHHHHHHHHHHHhC------------CC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEE
Confidence            3455567888888777776531            11         2357999999999999998531 357898876 57


Q ss_pred             CCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEEEccCCCcc---ccccccHHHHhcCCCCcEEEEc
Q 022672          105 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKT---TYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~~Plt~~---t~~li~~~~l~~mk~gailIN~  179 (294)
                      ..+... ..            ......+....++++++++  .|.+++|+|....   ...+.......-|....+.+|+
T Consensus       118 ~d~~~~-~~------------~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v  184 (213)
T PRK05472        118 VDPEKI-GT------------KIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSV  184 (213)
T ss_pred             CChhhc-CC------------EeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecC
Confidence            654321 00            0001112233568888865  9999999996554   1222223334556667888999


Q ss_pred             CCCcccCHHHHHHHHHc
Q 022672          180 SRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       180 aRG~~vd~~aL~~aL~~  196 (294)
                      .+|.+|+..+|..+|..
T Consensus       185 ~~~~~v~~~~l~~~l~~  201 (213)
T PRK05472        185 PEDVIVRNVDLTVELQT  201 (213)
T ss_pred             CCCCEEEEechHHHHHH
Confidence            99999999999998864

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.38  E-value=1.7e-06  Score=78.90  Aligned_cols=80  Identities=21%  Similarity=0.324  Sum_probs=66.5

Q ss_pred             CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +..+.||++.|||.|. +|+.+|..| ...|++|+.++++.                            .++.+.+++||
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL-~~~gatVtv~~s~t----------------------------~~l~~~~~~AD  203 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLL-LQKNASVTILHSRS----------------------------KDMASYLKDAD  203 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHH-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCC
Confidence            3579999999999988 999999998 68899999886531                            25788999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.+++-    .+++.++.   +|+|+++||+|--.
T Consensus       204 IVIsAvg~----p~~i~~~~---vk~gavVIDvGi~~  233 (286)
T PRK14175        204 VIVSAVGK----PGLVTKDV---VKEGAVIIDVGNTP  233 (286)
T ss_pred             EEEECCCC----CcccCHHH---cCCCcEEEEcCCCc
Confidence            99999983    44677764   68999999998643

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.34  E-value=3.7e-06  Score=71.84  Aligned_cols=144  Identities=20%  Similarity=0.250  Sum_probs=83.0

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHH--HHHhh-hhhhhhhcCCCC--------ccccccCCHHHHhh
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA-YGQFLKANGEQP--------VTWKRASSMDEVLR  143 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--~~~~~-~~~~~~~~~~~~--------~~~~~~~~l~ell~  143 (294)
                      +|+|||.|.||+.+|..++ ..|++|..||++......  ..... ... ....+...        .......+++++. 
T Consensus         1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-   77 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDR-LVRKGRLSQEEADAALARISFTTDLEEAV-   77 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHH-HHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred             CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhh-hhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence            6999999999999999874 679999999998764321  11111 111 11111111        1123457898888 


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCe
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA  223 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nv  223 (294)
                      +||+|+=++|..-+.+.-+-++.-+.++++++|...+  +-+....|.+.+.. .-+..++=.|.  |....||.+   |
T Consensus        78 ~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnT--Ssl~i~~la~~~~~-p~R~ig~Hf~~--P~~~~~lVE---v  149 (180)
T PF02737_consen   78 DADLVIEAIPEDLELKQELFAELDEICPPDTILASNT--SSLSISELAAALSR-PERFIGMHFFN--PPHLMPLVE---V  149 (180)
T ss_dssp             TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE----SSS-HHHHHTTSST-GGGEEEEEE-S--STTT--EEE---E
T ss_pred             hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecC--CCCCHHHHHhccCc-CceEEEEeccc--ccccCceEE---E
Confidence            9999999999877777666677777889999887653  34556667666642 33445554443  332234444   4


Q ss_pred             EEccCC
Q 022672          224 IVVPHI  229 (294)
Q Consensus       224 iiTPHi  229 (294)
                      +-.|+.
T Consensus       150 v~~~~T  155 (180)
T PF02737_consen  150 VPGPKT  155 (180)
T ss_dssp             EE-TTS
T ss_pred             eCCCCC
Confidence            555543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.33  E-value=7.9e-06  Score=75.12  Aligned_cols=99  Identities=15%  Similarity=0.193  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcccccccc
Q 022672           84 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  163 (294)
Q Consensus        84 IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~  163 (294)
                      -|+.+|++| ...|.+|++||++.....+...+    .+...+     .....+..+++++||+|++|+|..+.++.++ 
T Consensus        31 gGspMArnL-lkAGheV~V~Drnrsa~e~e~~e----~LaeaG-----A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-   99 (341)
T TIGR01724        31 GGSRMAIEF-AMAGHDVVLAEPNREFMSDDLWK----KVEDAG-----VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-   99 (341)
T ss_pred             CHHHHHHHH-HHCCCEEEEEeCChhhhhhhhhH----HHHHCC-----CeecCCHHHHHhCCCEEEEecCCHHHHHHHH-
Confidence            378999998 47899999999876432111000    011122     2345688999999999999999877777777 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          164 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       164 ~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ...+..+++|+++||+++   ++.+.+++.|+.
T Consensus       100 ~GLaa~L~~GaIVID~ST---IsP~t~~~~~e~  129 (341)
T TIGR01724       100 RTIIEHVPENAVICNTCT---VSPVVLYYSLEK  129 (341)
T ss_pred             HHHHhcCCCCCEEEECCC---CCHHHHHHHHHH
Confidence            568899999999999966   556666666654

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK07680 late competence protein ComER; Validated

Probab=98.32  E-value=2.7e-06  Score=77.27  Aligned_cols=104  Identities=19%  Similarity=0.277  Sum_probs=71.3

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      +|||||+|.||+.+++.|. ..|    .+|.+|+++.... +.+.+.+         .  +.....+..+++.++|+|++
T Consensus         2 ~I~iIG~G~mG~ala~~L~-~~g~~~~~~v~v~~r~~~~~-~~~~~~~---------~--g~~~~~~~~~~~~~aDiVil   68 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFL-ESGAVKPSQLTITNRTPAKA-YHIKERY---------P--GIHVAKTIEEVISQSDLIFI   68 (273)
T ss_pred             EEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCHHHH-HHHHHHc---------C--CeEEECCHHHHHHhCCEEEE
Confidence            6999999999999999874 455    3789999976442 2211110         0  12234578888999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  195 (294)
                      ++| ......++ ++....++++.++|+++-|  +..+.|.+.+.
T Consensus        69 av~-p~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         69 CVK-PLDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             ecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            998 33344444 4455567888999999854  36666766554

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.31  E-value=3.4e-06  Score=75.94  Aligned_cols=104  Identities=16%  Similarity=0.267  Sum_probs=70.1

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCC---EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      +|||||+|+||+++++.|. ..|.   .+.+|+++.... +.+...+       +    +.....+.+++++++|+|+++
T Consensus         2 ~IgiIG~G~mG~aia~~L~-~~g~~~~~i~v~~r~~~~~-~~l~~~~-------~----~~~~~~~~~~~~~~aDvVila   68 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLL-TSPADVSEIIVSPRNAQIA-ARLAERF-------P----KVRIAKDNQAVVDRSDVVFLA   68 (258)
T ss_pred             eEEEECcCHHHHHHHHHHH-hCCCChheEEEECCCHHHH-HHHHHHc-------C----CceEeCCHHHHHHhCCEEEEE
Confidence            7999999999999999974 4453   357888865432 2221111       0    122346788899999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      +| ......++. + + .++++.++|.++  .-+..+.|.+.+..+
T Consensus        69 v~-p~~~~~vl~-~-l-~~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         69 VR-PQIAEEVLR-A-L-RFRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             eC-HHHHHHHHH-H-h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence            99 344444442 2 2 257889999986  447788888777553

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.30  E-value=3.4e-06  Score=73.08  Aligned_cols=94  Identities=20%  Similarity=0.248  Sum_probs=66.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++++|+|.|+||..+|+++ ...|.+|++-+++.++..+...+...        ..   ....+.++..+.+|+|++++|
T Consensus         2 ~~~~i~GtGniG~alA~~~-a~ag~eV~igs~r~~~~~~a~a~~l~--------~~---i~~~~~~dA~~~aDVVvLAVP   69 (211)
T COG2085           2 MIIAIIGTGNIGSALALRL-AKAGHEVIIGSSRGPKALAAAAAALG--------PL---ITGGSNEDAAALADVVVLAVP   69 (211)
T ss_pred             cEEEEeccChHHHHHHHHH-HhCCCeEEEecCCChhHHHHHHHhhc--------cc---cccCChHHHHhcCCEEEEecc
Confidence            5899999999999999998 47899998886666554433222111        00   123578899999999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      .. .....+ ++....+. |.++|++.-.
T Consensus        70 ~~-a~~~v~-~~l~~~~~-~KIvID~tnp   95 (211)
T COG2085          70 FE-AIPDVL-AELRDALG-GKIVIDATNP   95 (211)
T ss_pred             HH-HHHhHH-HHHHHHhC-CeEEEecCCC
Confidence            53 333332 55555565 8899998654

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.27  E-value=7.3e-06  Score=72.92  Aligned_cols=108  Identities=19%  Similarity=0.278  Sum_probs=66.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcC--CCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGF--KMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~--g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ..++|||||.|.||+++++.+++..  ..+ ++.++++.....+.+...+            +.....+++++++++|+|
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~DiV   70 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------------NVSTTTDWKQHVTSVDTI   70 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------------CcEEeCChHHHHhcCCEE
Confidence            3568999999999999999874332  244 7778765333233222111            112345788999999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ++++|. ...+.++ ++.-..++ +.++|+++-|  ++.+.|.+.+..
T Consensus        71 iiavp~-~~~~~v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~  113 (245)
T PRK07634         71 VLAMPP-SAHEELL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPK  113 (245)
T ss_pred             EEecCH-HHHHHHH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCC
Confidence            999993 2222222 33222334 5689998766  455566666644

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.25  E-value=4.2e-06  Score=81.39  Aligned_cols=117  Identities=15%  Similarity=0.236  Sum_probs=90.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEEccCCCccccc
Q 022672           84 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLHPVLDKTTYH  160 (294)
Q Consensus        84 IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~~Plt~~t~~  160 (294)
                      ||+.+|++| ...|.+|.+||+++... +.+...       .+. ..+.....+++++++.   +|+|++++|..+.+..
T Consensus         1 MG~~mA~nL-~~~G~~V~v~nrt~~~~-~~l~~~-------~g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~   70 (459)
T PRK09287          1 MGKNLALNI-ASHGYTVAVYNRTPEKT-DEFLAE-------EGK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA   70 (459)
T ss_pred             CcHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHh-------hCC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence            699999998 47899999999987653 222210       010 1123456789998875   8999999998888888


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  211 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  211 (294)
                      ++ .+.+..|.+|.++||++....-|...+.+.+++..+.....=|...++
T Consensus        71 Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         71 VI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             HH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            88 568899999999999999999999999999998887766555666554

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.22  E-value=5.4e-06  Score=75.16  Aligned_cols=107  Identities=20%  Similarity=0.346  Sum_probs=69.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhc-CCCEE-EEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEG-FKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~-~g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+|||||+|.||+.+++.+.+. .++++ .++|++.... +.+.+.            .+.....++++++.++|+|+.|
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a-~~~a~~------------~~~~~~~~~~ell~~~DvVvi~   68 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKA-ENLASK------------TGAKACLSIDELVEDVDLVVEC   68 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHH-HHHHHh------------cCCeeECCHHHHhcCCCEEEEc
Confidence            4799999999999999987433 36774 4688876432 222111            1122346899999999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  198 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~---~aL~~aL~~g~  198 (294)
                      .|  ++...   +-....++.|.-++..+.|.+.|.   +.|.++.+++.
T Consensus        69 a~--~~~~~---~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g  113 (265)
T PRK13304         69 AS--VNAVE---EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN  113 (265)
T ss_pred             CC--hHHHH---HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence            87  33222   222233455666666777887764   35666666654

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.22  E-value=3.9e-05  Score=74.99  Aligned_cols=147  Identities=15%  Similarity=0.175  Sum_probs=92.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhh--------hhhhhhhcCCCCccccccCCHHHHhhc
Q 022672           74 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLRE  144 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~ell~~  144 (294)
                      ++|+|||+|.+|..+|-.|++ +.|.+|+++|...... +....+        ..+.+.. .. .-......++++.+++
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v-~~l~~g~~~~~e~gl~ell~~-~~-~~~l~~t~~~~~~i~~   78 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRI-DAWNSDQLPIYEPGLDEVVKQ-CR-GKNLFFSTDVEKHVAE   78 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHcCCCccCCCCHHHHHHH-hh-cCCEEEEcCHHHHHhc
Confidence            579999999999999998863 4579999999876542 221111        0000010 00 0012234567788999


Q ss_pred             CCEEEEccCCCcccc------------ccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee-CCCC
Q 022672          145 ADVISLHPVLDKTTY------------HLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFED  209 (294)
Q Consensus       145 aDiV~l~~Plt~~t~------------~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD-V~~~  209 (294)
                      ||++++|+| ||...            .+.  -++.-+.++++.++|.-|.-.+=-.+.+...|.+.. .|.-.. ++.+
T Consensus        79 advi~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~P  156 (473)
T PLN02353         79 ADIVFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNP  156 (473)
T ss_pred             CCEEEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECC
Confidence            999999997 44321            111  234557789999999999887777778887776521 121111 3667


Q ss_pred             CCCCC----CCccCCCCeEE
Q 022672          210 EPYMK----PGLSEMKNAIV  225 (294)
Q Consensus       210 EP~~~----~~L~~~~nvii  225 (294)
                      |=+..    +.+...|+|++
T Consensus       157 Erl~~G~a~~d~~~p~riVi  176 (473)
T PLN02353        157 EFLAEGTAIEDLFKPDRVLI  176 (473)
T ss_pred             CccCCCCcccccCCCCEEEE
Confidence            76532    35777788874

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.20  E-value=4.4e-05  Score=67.63  Aligned_cols=161  Identities=19%  Similarity=0.198  Sum_probs=101.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC---EEEEEcCCc----hhH--HHHHHhhhhhhhhhcCCCCccccccCCHH
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ----ATR--LEKFVTAYGQFLKANGEQPVTWKRASSMD  139 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~---~V~~~d~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  139 (294)
                      ..+.++++.|+|.|.+|+.+|+.| ...|+   +++.+|++.    ...  .......+.+   .....+  .  ..++.
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~---~~~~~~--~--~~~l~   92 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK---ETNPEK--T--GGTLK   92 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHHH---HhccCc--c--cCCHH
Confidence            358899999999999999999987 46787   499999983    211  1111111111   111011  1  13687


Q ss_pred             HHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-cceEEeeCCCCCCCCCCCcc
Q 022672          140 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLS  218 (294)
Q Consensus       140 ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~L~  218 (294)
                      +.++++|+|+.+.|     .++++.+.++.|+++.++...+.-  ..|.-+.++.+.|- +..-+.     +.    -..
T Consensus        93 ~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~----~~~  156 (226)
T cd05311          93 EALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SD----FPN  156 (226)
T ss_pred             HHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CC----Ccc
Confidence            88899999999986     577889999999999999888833  34444444444433 222221     11    235


Q ss_pred             CCCCeEEccCCCCC-----cHHHHHHHHHHHHHHHHHHHc
Q 022672          219 EMKNAIVVPHIASA-----SKWTREGMATLAALNVLGKIK  253 (294)
Q Consensus       219 ~~~nviiTPHia~~-----t~~~~~~~~~~~~~nl~~~~~  253 (294)
                      +..|+++-|=++-.     .....+.|...+++-+..+..
T Consensus       157 Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~  196 (226)
T cd05311         157 QVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAE  196 (226)
T ss_pred             ccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence            78999999987631     112235566666666666543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.19  E-value=8.4e-06  Score=68.77  Aligned_cols=110  Identities=21%  Similarity=0.275  Sum_probs=69.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC-c------------ccccc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-V------------TWKRA  135 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~  135 (294)
                      ..+...+|.|+|.|..|+..++.+ +++|++|..+|.+..... .........+....... .            .....
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPERLR-QLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYE   93 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHHHH-HHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHHHH-hhhcccCceEEEcccccccccccchhhhhHHHHHhH
Confidence            357789999999999999999986 799999999998764321 11111111110000000 0            01122


Q ss_pred             CCHHHHhhcCCEEEEccC-CCccccccccHHHHhcCCCCcEEEEcC
Q 022672          136 SSMDEVLREADVISLHPV-LDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       136 ~~l~ell~~aDiV~l~~P-lt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ..|.+.++.+|+|+.++- -....-.++.++.++.||++++++++|
T Consensus        94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            357888999999986443 355677899999999999999999995

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.17  E-value=4.7e-06  Score=71.54  Aligned_cols=149  Identities=15%  Similarity=0.176  Sum_probs=79.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh--------hhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      ++|+|+|+|.+|..+|..|+ ..|.+|++||...... +...++.        .+.+.... ..-......+.++.+++|
T Consensus         1 M~I~ViGlGyvGl~~A~~lA-~~G~~V~g~D~~~~~v-~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t~~~~~ai~~a   77 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALA-EKGHQVIGVDIDEEKV-EALNNGELPIYEPGLDELLKENV-SAGRLRATTDIEEAIKDA   77 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHH-HTTSEEEEE-S-HHHH-HHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEESEHHHHHHH-
T ss_pred             CEEEEECCCcchHHHHHHHH-hCCCEEEEEeCChHHH-HHHhhccccccccchhhhhcccc-ccccchhhhhhhhhhhcc
Confidence            58999999999999999984 7899999999886532 2221110        00000000 001123346788889999


Q ss_pred             CEEEEccCCCcccccccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHcCCcceEEee-CCCCCCCCC-
Q 022672          146 DVISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALV-EHLKQNPMFRVGLD-VFEDEPYMK-  214 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~--------~~~l~~mk~gailIN~aRG~~vd~~aL~-~aL~~g~i~ga~lD-V~~~EP~~~-  214 (294)
                      |++++|+|...+..+..|        +...+.++++.++|.-|+-.+=-.+.+. ..|++....+.-++ +|.+|=+.. 
T Consensus        78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G  157 (185)
T PF03721_consen   78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG  157 (185)
T ss_dssp             SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred             ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence            999999993332222222        3556778999999999998887777544 44443222111111 366675532 


Q ss_pred             ---CCccCCCCeEE
Q 022672          215 ---PGLSEMKNAIV  225 (294)
Q Consensus       215 ---~~L~~~~nvii  225 (294)
                         ..+.+.|+|++
T Consensus       158 ~a~~d~~~~~rvV~  171 (185)
T PF03721_consen  158 RAIEDFRNPPRVVG  171 (185)
T ss_dssp             SHHHHHHSSSEEEE
T ss_pred             CcchhccCCCEEEE
Confidence               24677788873

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.17  E-value=8.5e-06  Score=75.26  Aligned_cols=113  Identities=19%  Similarity=0.224  Sum_probs=73.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|+|||.|..|.++|+.|+ .-|.+|..|.+++....+-.....+.........+.......+++++++.||+|++.+|
T Consensus         2 ~kI~ViGaGswGTALA~~la-~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP   80 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLA-RNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP   80 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHH-hcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence            57999999999999999984 66788888887764332211111111111111222334456789999999999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA  189 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~a  189 (294)
                       +...+.++ ++.-..+++++.+|+++.|=-.+.-.
T Consensus        81 -s~~~r~v~-~~l~~~l~~~~~iv~~sKGie~~t~~  114 (329)
T COG0240          81 -SQALREVL-RQLKPLLLKDAIIVSATKGLEPETGR  114 (329)
T ss_pred             -hHHHHHHH-HHHhhhccCCCeEEEEeccccCCCcc
Confidence             23333333 33335678999999999875554433

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.16  E-value=8.6e-06  Score=73.49  Aligned_cols=102  Identities=22%  Similarity=0.287  Sum_probs=65.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCC---CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ++|+|||+|.||+.+++.| ...|   .+|.+|+++.... +.+.+.+            +.....+.++++.++|+|++
T Consensus         3 m~I~iIG~G~mG~~la~~l-~~~g~~~~~v~v~~r~~~~~-~~~~~~~------------g~~~~~~~~~~~~~advVil   68 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGL-LASGVPAKDIIVSDPSPEKR-AALAEEY------------GVRAATDNQEAAQEADVVVL   68 (267)
T ss_pred             CEEEEEechHHHHHHHHHH-HhCCCCcceEEEEcCCHHHH-HHHHHhc------------CCeecCChHHHHhcCCEEEE
Confidence            5799999999999999987 4556   6899999976442 2221111            11223577888899999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  195 (294)
                      |+|. .....++ ++....+  +.++|++.-|-  ..+.+.+.+.
T Consensus        69 ~v~~-~~~~~v~-~~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         69 AVKP-QVMEEVL-SELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             EcCH-HHHHHHH-HHHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            9982 2333333 2232223  46788776653  5566666554

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.15  E-value=2.4e-05  Score=70.72  Aligned_cols=100  Identities=24%  Similarity=0.355  Sum_probs=72.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ++|||||+|+||++++.-| ..-|    -+|++.+|+..... .+.+.|+            .....+.+++..++|+|+
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl-~~~g~~~~~~I~v~~~~~e~~~-~l~~~~g------------~~~~~~~~~~~~~advv~   67 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGL-LKSGALPPEEIIVTNRSEEKRA-ALAAEYG------------VVTTTDNQEAVEEADVVF   67 (266)
T ss_pred             ceEEEEccCHHHHHHHHHH-HhcCCCCcceEEEeCCCHHHHH-HHHHHcC------------CcccCcHHHHHhhCCEEE
Confidence            5799999999999999987 4555    58999999876543 2222221            112467788999999999


Q ss_pred             EccCCCccccccccHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 022672          150 LHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk---~gailIN~aRG~~vd~~aL~~aL~  195 (294)
                      +++.  |+..    .+.++.++   ++.++|.++=|  |..+.|.+.+.
T Consensus        68 LavK--Pq~~----~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~  108 (266)
T COG0345          68 LAVK--PQDL----EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG  108 (266)
T ss_pred             EEeC--hHhH----HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence            9997  5433    56666666   68999999776  56667777765

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.15  E-value=1.2e-05  Score=67.36  Aligned_cols=80  Identities=20%  Similarity=0.278  Sum_probs=56.5

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           69 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        69 ~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .++.||++.|||-+. +|+.++.+| ...|+.|..++.+.                            .++++.+++||+
T Consensus        32 ~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~T----------------------------~~l~~~~~~ADI   82 (160)
T PF02882_consen   32 IDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSKT----------------------------KNLQEITRRADI   82 (160)
T ss_dssp             -STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TTS----------------------------SSHHHHHTTSSE
T ss_pred             CCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCCC----------------------------CcccceeeeccE
Confidence            479999999999985 999999998 67899998875431                            468899999999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                      |+.++.    ..++|..+   .+|+|+++||++.-..
T Consensus        83 VVsa~G----~~~~i~~~---~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   83 VVSAVG----KPNLIKAD---WIKPGAVVIDVGINYV  112 (160)
T ss_dssp             EEE-SS----STT-B-GG---GS-TTEEEEE--CEEE
T ss_pred             Eeeeec----cccccccc---cccCCcEEEecCCccc
Confidence            999997    35566655   4689999999976543

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.14  E-value=1e-05  Score=78.04  Aligned_cols=102  Identities=19%  Similarity=0.271  Sum_probs=70.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.|++++|+|.|.||+.+++.| ...| .+|++++++.... ..+...+       +..   .....++.+.+.++|+|
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~~~-------g~~---~i~~~~l~~~l~~aDvV  244 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAKEL-------GGE---AVKFEDLEEYLAEADIV  244 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCe---EeeHHHHHHHHhhCCEE
Confidence            47899999999999999999998 5788 6899999976532 2222111       111   11224677888999999


Q ss_pred             EEccCCCccccccccHHHHhcCC----CCcEEEEcCCCcccC
Q 022672          149 SLHPVLDKTTYHLINKERLATMK----KEAILVNCSRGPVID  186 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk----~gailIN~aRG~~vd  186 (294)
                      +.|++   .+..+++++.++.+.    ...++||.+...=||
T Consensus       245 i~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       245 ISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             EECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            99975   456678888876652    235788887543333

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.13  E-value=1.9e-05  Score=72.00  Aligned_cols=79  Identities=16%  Similarity=0.180  Sum_probs=64.5

Q ss_pred             CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-|. +|+.+|.+| ...|+.|+.++.+.                            .++++.+++||
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~AD  204 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLEL-LLAGCTVTVCHRFT----------------------------KNLRHHVRNAD  204 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHH-HHCCCeEEEEECCC----------------------------CCHHHHHhhCC
Confidence            4579999999999999 999999998 67899999886421                            36889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      +|+.+++-    .+++..   ..+|+|+++||+|--
T Consensus       205 Ivi~avG~----p~~v~~---~~vk~gavVIDvGin  233 (285)
T PRK10792        205 LLVVAVGK----PGFIPG---EWIKPGAIVIDVGIN  233 (285)
T ss_pred             EEEEcCCC----cccccH---HHcCCCcEEEEcccc
Confidence            99999962    235666   446899999999843

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.12  E-value=1.3e-05  Score=73.01  Aligned_cols=80  Identities=21%  Similarity=0.272  Sum_probs=66.0

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-| .+|+.+|.+| ...|+.|+.++.+.                            .++.+.+++||
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL-~~~gAtVtv~hs~t----------------------------~~l~~~~~~AD  202 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLM-LNAGASVSVCHILT----------------------------KDLSFYTQNAD  202 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHH-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCC
Confidence            458999999999999 9999999997 57899998875321                            25778899999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.+++    ..+++..+++   |+|+++||++--.
T Consensus       203 IvV~AvG----~p~~i~~~~v---k~GavVIDvGi~~  232 (285)
T PRK14191        203 IVCVGVG----KPDLIKASMV---KKGAVVVDIGINR  232 (285)
T ss_pred             EEEEecC----CCCcCCHHHc---CCCcEEEEeeccc
Confidence            9999997    3557777765   8999999998644

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.12  E-value=2.6e-05  Score=58.33  Aligned_cols=66  Identities=24%  Similarity=0.392  Sum_probs=52.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.+++++|+|.|.+|+.+++.| ... +.+|..||+                                        |++
T Consensus        20 ~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r----------------------------------------di~   58 (86)
T cd05191          20 SLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR----------------------------------------DIL   58 (86)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC----------------------------------------CEE
Confidence            58899999999999999999998 455 567776641                                        999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +.+.+-    .+.+.++..+.+++++++++++
T Consensus        59 i~~~~~----~~~~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          59 VTATPA----GVPVLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             EEcCCC----CCCchHHHHHhcCCCCEEEecC
Confidence            999873    4455566678899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.10  E-value=1.2e-05  Score=72.97  Aligned_cols=80  Identities=15%  Similarity=0.224  Sum_probs=66.7

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.|+++.|+|.+ ..|+.+|.+| ...|++|..+..+.                            .++.+.+++||
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL-~~~~atVtv~hs~t----------------------------~~L~~~~~~AD  197 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALL-LNADATVTICHSKT----------------------------ENLKAELRQAD  197 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHH-HhCCCeeEEEecCh----------------------------hHHHHHHhhCC
Confidence            458999999999999 9999999987 68999998876421                            36889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.+++-    .+++.++++   |||+++||+|-..
T Consensus       198 IvI~Avgk----~~lv~~~~v---k~GavVIDVgi~~  227 (279)
T PRK14178        198 ILVSAAGK----AGFITPDMV---KPGATVIDVGINQ  227 (279)
T ss_pred             EEEECCCc----ccccCHHHc---CCCcEEEEeeccc
Confidence            99999972    277888874   9999999998543

>PLN00203 glutamyl-tRNA reductase

Probab=98.10  E-value=1.5e-05  Score=78.66  Aligned_cols=101  Identities=18%  Similarity=0.231  Sum_probs=70.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ++.+++|+|||.|.||+.+++.| ...|+ +|++++++.... ..+...+       +.....+....++.+.+.++|+|
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~era-~~La~~~-------~g~~i~~~~~~dl~~al~~aDVV  333 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEERV-AALREEF-------PDVEIIYKPLDEMLACAAEADVV  333 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHh-------CCCceEeecHhhHHHHHhcCCEE
Confidence            48899999999999999999997 57887 699999886542 2222211       11111122335677889999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCC-------cEEEEcCCC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKE-------AILVNCSRG  182 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~g-------ailIN~aRG  182 (294)
                      +.+.|   ....++.++.++.++++       -+|||.|-.
T Consensus       334 IsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP  371 (519)
T PLN00203        334 FTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVP  371 (519)
T ss_pred             EEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence            99875   45667888888877432       377877644

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.09  E-value=1.8e-05  Score=73.30  Aligned_cols=97  Identities=22%  Similarity=0.269  Sum_probs=62.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      +.|++|+|||.|.||+.+++.| +..| .+|++++++.... ..+...+       +.   ......++.+.+.++|+|+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra-~~la~~~-------g~---~~~~~~~~~~~l~~aDvVi  243 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERA-EELAKEL-------GG---NAVPLDELLELLNEADVVI  243 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHc-------CC---eEEeHHHHHHHHhcCCEEE
Confidence            6899999999999999999997 4555 5788999876532 2222211       11   1111235678889999999


Q ss_pred             EccCCCccccccccHHHHhcC-CCCcEEEEcCC
Q 022672          150 LHPVLDKTTYHLINKERLATM-KKEAILVNCSR  181 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~m-k~gailIN~aR  181 (294)
                      .++|. ++...++ +..++.. +++.++||.+.
T Consensus       244 ~at~~-~~~~~~~-~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         244 SATGA-PHYAKIV-ERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             ECCCC-CchHHHH-HHHHhhCCCCCeEEEEeCC
Confidence            99984 3332222 3333322 35677777764

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.09  E-value=1.9e-05  Score=72.14  Aligned_cols=80  Identities=23%  Similarity=0.330  Sum_probs=64.6

Q ss_pred             CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||.|. +|+++|..| ...|++|+.+++..                            .++.+.++++|
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aD  204 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQAD  204 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCC
Confidence            4579999999999998 999999987 57888999887521                            25777889999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.+++ .+.   +++.+.   +|+|++++|++-..
T Consensus       205 IvI~AtG-~~~---~v~~~~---lk~gavViDvg~n~  234 (283)
T PRK14192        205 IIVGAVG-KPE---LIKKDW---IKQGAVVVDAGFHP  234 (283)
T ss_pred             EEEEccC-CCC---cCCHHH---cCCCCEEEEEEEee
Confidence            9999996 232   676654   68999999997543

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.08  E-value=1.5e-05  Score=78.23  Aligned_cols=108  Identities=22%  Similarity=0.270  Sum_probs=71.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhh-----hhcCCCCccccccCC-------
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-----KANGEQPVTWKRASS-------  137 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------  137 (294)
                      .+.+.++.|+|+|.+|...++.+ +.+|++|+++|++.... +.. ..++...     ...+....++....+       
T Consensus       161 ~vp~akVlViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~rl-e~a-~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~  237 (511)
T TIGR00561       161 KVPPAKVLVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVK-EQV-QSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE  237 (511)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH-HHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence            45678999999999999999985 79999999999887532 221 1111110     000000011111111       


Q ss_pred             ---HHHHhhcCCEEEEcc--CCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          138 ---MDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       138 ---l~ell~~aDiV~l~~--Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                         +.+.++++|+|+.++  |. ...-.++.++.++.||+|+++||+|-
T Consensus       238 ~~~~~e~~~~~DIVI~TalipG-~~aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       238 MELFAAQAKEVDIIITTALIPG-KPAPKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             HHHHHHHhCCCCEEEECcccCC-CCCCeeehHHHHhhCCCCCEEEEeee
Confidence               456678999998877  32 22346889999999999999999964

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.07  E-value=2.1e-05  Score=72.20  Aligned_cols=120  Identities=13%  Similarity=0.221  Sum_probs=72.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhc-CCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.||..+|..|+ ..|.+|+.|++ .. ..+...+ .+-.+... +..........+.++....+|+|++++
T Consensus         1 mkI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r-~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav   76 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR-PK-RAKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV   76 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHH-HCCCceEEEec-HH-HHHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence            36999999999999999985 56899999998 32 2222211 01000000 000001112345667778999999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      |. .++...+ ++....++++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus        77 k~-~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         77 KA-YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             cc-cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence            93 3444433 4444556778888877665 44466677776554443

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.07  E-value=5.3e-05  Score=62.09  Aligned_cols=80  Identities=23%  Similarity=0.349  Sum_probs=64.8

Q ss_pred             CcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|+|- ..+|+.+|.+| ...|++|..++.+.                            .++++.+++||
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD   73 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD   73 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence            35799999999999 56899999997 57899998876421                            36888999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.+++..    ++|+.+.   +|||+++|+++...
T Consensus        74 IVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          74 VVVVGSPKP----EKVPTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             EEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence            999999742    6677765   68999999997654

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.07  E-value=2.1e-05  Score=74.42  Aligned_cols=113  Identities=19%  Similarity=0.236  Sum_probs=67.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhc------CCCEEEEEcCCchh----HHHHHHh-hhhhhhhhcCCCCccccccCCHHHH
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQAT----RLEKFVT-AYGQFLKANGEQPVTWKRASSMDEV  141 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~------~g~~V~~~d~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~el  141 (294)
                      -++|+|||.|..|.++|..|+..      |+.+|..|.++...    ..+...+ ..+......-..+.......+++++
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea   90 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA   90 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence            35899999999999999998643      35788888766531    1111100 0000000001112223345788999


Q ss_pred             hhcCCEEEEccCCCccccccccHHHHh--cCCCCcEEEEcCCCcccCH
Q 022672          142 LREADVISLHPVLDKTTYHLINKERLA--TMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       142 l~~aDiV~l~~Plt~~t~~li~~~~l~--~mk~gailIN~aRG~~vd~  187 (294)
                      ++.+|+|++++| ....+.++ ++.-.  .+++++++|+++-|=-.+.
T Consensus        91 v~~aDiIvlAVP-sq~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~t  136 (365)
T PTZ00345         91 VEDADLLIFVIP-HQFLESVL-SQIKENNNLKKHARAISLTKGIIVEN  136 (365)
T ss_pred             HhcCCEEEEEcC-hHHHHHHH-HHhccccccCCCCEEEEEeCCcccCC
Confidence            999999999999 22233332 33333  4666789999988754443

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=98.06  E-value=1.4e-05  Score=72.21  Aligned_cols=96  Identities=22%  Similarity=0.296  Sum_probs=61.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ..+|||||+|.||+++++.|. ..+    -++++++++....                    +.....+..+++.+||+|
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~-~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~D~V   61 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIE-NSNIIGKENIYYHTPSKKNT--------------------PFVYLQSNEELAKTCDII   61 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHH-hCCCCCcceEEEECCChhcC--------------------CeEEeCChHHHHHhCCEE
Confidence            468999999999999999974 333    2588888764321                    012235677888999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  194 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL  194 (294)
                      ++|+| ...+..++ .+....++++ .+|.+.-|  +..+.+.+.+
T Consensus        62 ilavk-p~~~~~vl-~~i~~~l~~~-~iIS~~aG--i~~~~l~~~~  102 (260)
T PTZ00431         62 VLAVK-PDLAGKVL-LEIKPYLGSK-LLISICGG--LNLKTLEEMV  102 (260)
T ss_pred             EEEeC-HHHHHHHH-HHHHhhccCC-EEEEEeCC--ccHHHHHHHc
Confidence            99998 34444444 3343445554 45555444  3455555554

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=98.05  E-value=2.3e-05  Score=73.01  Aligned_cols=101  Identities=17%  Similarity=0.135  Sum_probs=64.7

Q ss_pred             EEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHh--hhhhhhhhcC----CCCccccccCCHHHHhhcCCEEE
Q 022672           76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT--AYGQFLKANG----EQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        76 vGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      |||+|||.||+.+++.+.+.-++++++...........+..  +|........    ....+.....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            69999999999999986445688988754322221111111  1110000000    00011222457999999999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      .|.|   .+.+..+++.+..|+++++|+-.
T Consensus        81 e~Tp---~~~~~~na~~~~~~GakaVl~~~  107 (333)
T TIGR01546        81 DATP---GGIGAKNKPLYEKAGVKAIFQGG  107 (333)
T ss_pred             ECCC---CCCChhhHHHHHhCCcCEEEECC
Confidence            9865   67889999999999999999865

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.05  E-value=2.8e-05  Score=72.63  Aligned_cols=118  Identities=15%  Similarity=0.150  Sum_probs=72.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC-----ccccccCCHHHHhhcCCEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-----VTWKRASSMDEVLREADVI  148 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~ell~~aDiV  148 (294)
                      ++|+|||.|.||..+|..| ...|.+|.+||+...  .+.+.. .+..........     .......+. +.++.+|+|
T Consensus         3 mkI~IiG~G~mG~~~A~~L-~~~G~~V~~~~r~~~--~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   77 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRL-AAAGADVTLIGRARI--GDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV   77 (341)
T ss_pred             ceEEEECCCHHHHHHHHHH-HhcCCcEEEEecHHH--HHHHHh-cCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence            4799999999999999998 467999999998542  122111 010000000000     001112344 567899999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i  199 (294)
                      ++++|. ++....+ ++....++++.++|.+.-| +...+.+.+.+...++
T Consensus        78 il~vk~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~  125 (341)
T PRK08229         78 LVTVKS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV  125 (341)
T ss_pred             EEEecC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence            999984 4445444 4566677889999988654 4445667776655444

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=2.2e-05  Score=71.48  Aligned_cols=78  Identities=17%  Similarity=0.366  Sum_probs=64.3

Q ss_pred             CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-|. +|+.+|..| ...|+.|+.++...                            .++.+..++||
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~AD  209 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAML-LNRNATVSVCHVFT----------------------------DDLKKYTLDAD  209 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHH-HHCCCEEEEEeccC----------------------------CCHHHHHhhCC
Confidence            4579999999999999 999999998 67899998876321                            36888999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +|+.++.-    .+++..+   .+|+|+++||+|-
T Consensus       210 Ivv~AvG~----p~~i~~~---~vk~gavVIDvGi  237 (287)
T PRK14176        210 ILVVATGV----KHLIKAD---MVKEGAVIFDVGI  237 (287)
T ss_pred             EEEEccCC----ccccCHH---HcCCCcEEEEecc
Confidence            99998862    3467666   4689999999975

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.03  E-value=3.1e-05  Score=72.29  Aligned_cols=95  Identities=18%  Similarity=0.228  Sum_probs=66.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      -+++||||.|.+|+..++.+...+. -+|.+||++.... +.+.+..    ..   ....+....+.++++++||+|+.|
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~-~~~~~~~----~~---~g~~v~~~~~~~eav~~aDiVita  199 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR-EKFALRA----SD---YEVPVRAATDPREAVEGCDILVTT  199 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHH----Hh---hCCcEEEeCCHHHHhccCCEEEEe
Confidence            4789999999999997776643343 5789999987653 3332221    11   111233457899999999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +|.   ..-++..+   .+|||+.+..++-
T Consensus       200 T~s---~~P~~~~~---~l~~g~~v~~vGs  223 (325)
T TIGR02371       200 TPS---RKPVVKAD---WVSEGTHINAIGA  223 (325)
T ss_pred             cCC---CCcEecHH---HcCCCCEEEecCC
Confidence            873   35666554   4599999999974

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.03  E-value=2e-05  Score=73.94  Aligned_cols=110  Identities=17%  Similarity=0.285  Sum_probs=67.4

Q ss_pred             EEEEEcCChHHHHHHHHHhh-c------CCCEEEEEcCCc---hhHHHHHHhhh--hhhhhhcCCCCccccccCCHHHHh
Q 022672           75 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAY--GQFLKANGEQPVTWKRASSMDEVL  142 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~-~------~g~~V~~~d~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~ell  142 (294)
                      +|+|||.|..|.++|..|+. +      |+.+|..|.+..   ...........  +......-..+.......++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            48999999999999998853 2      448999998732   11111111100  000000000111223446899999


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  186 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  186 (294)
                      ++||+|++++| +...+.+ -++.-..++++..+|+++.|=-.+
T Consensus        81 ~~ADiIIlAVP-s~~i~~v-l~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        81 KGADILVFVIP-HQFLEGI-CKQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             hcCCEEEEECC-hHHHHHH-HHHHHhhcCCCCEEEEEeCCcccC
Confidence            99999999999 2333333 355556678899999999884433

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.00  E-value=0.0001  Score=69.40  Aligned_cols=152  Identities=20%  Similarity=0.214  Sum_probs=95.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh--------hh---hhhhcCCCCccccccCCHHHHh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQ---FLKANGEQPVTWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~l~ell  142 (294)
                      .+|||||+|-||-.+|-.++ ..|.+|+++|.+..... ..-.+-        ..   .....+    ..+...+.++ +
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA-~~G~~ViG~DIn~~~Vd-~ln~G~~~i~e~~~~~~v~~~v~~g----~lraTtd~~~-l   82 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFA-SAGFKVIGVDINQKKVD-KLNRGESYIEEPDLDEVVKEAVESG----KLRATTDPEE-L   82 (436)
T ss_pred             eEEEEEccccccHHHHHHHH-HcCCceEeEeCCHHHHH-HHhCCcceeecCcHHHHHHHHHhcC----CceEecChhh-c
Confidence            78999999999999999874 78999999998865422 111000        00   000001    0122334444 4


Q ss_pred             hcCCEEEEccCCCccccc-c------cc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC-CcceEEeeC---CCC
Q 022672          143 READVISLHPVLDKTTYH-L------IN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDV---FED  209 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~-l------i~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g-~i~ga~lDV---~~~  209 (294)
                      +.||++++|+| ||-+.. -      .+  +.....||+|.++|==|+-..=.++.++..|.+. .-....-|.   |.+
T Consensus        83 ~~~dv~iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP  161 (436)
T COG0677          83 KECDVFIICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP  161 (436)
T ss_pred             ccCCEEEEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence            59999999999 665442 1      11  3455789999999988888888888888777553 111122343   566


Q ss_pred             CCC-CCC---CccCCCCeEEccCCCCCcHHHHH
Q 022672          210 EPY-MKP---GLSEMKNAIVVPHIASASKWTRE  238 (294)
Q Consensus       210 EP~-~~~---~L~~~~nviiTPHia~~t~~~~~  238 (294)
                      |-. |.+   .+.+.|+||     ||.|..+.+
T Consensus       162 ERv~PG~~~~el~~~~kVI-----gG~tp~~~e  189 (436)
T COG0677         162 ERVLPGNVLKELVNNPKVI-----GGVTPKCAE  189 (436)
T ss_pred             cccCCCchhhhhhcCCcee-----ecCCHHHHH
Confidence            643 333   466677776     777765443

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.00  E-value=1.4e-05  Score=72.82  Aligned_cols=102  Identities=20%  Similarity=0.342  Sum_probs=74.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+...+|.|||.|-+|..-||. +.++|.+|...|.+.+. +....+.|+..+      .........+++.+.++|+|+
T Consensus       165 GV~~~kv~iiGGGvvgtnaAki-A~glgA~Vtild~n~~r-l~~ldd~f~~rv------~~~~st~~~iee~v~~aDlvI  236 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKI-AIGLGADVTILDLNIDR-LRQLDDLFGGRV------HTLYSTPSNIEEAVKKADLVI  236 (371)
T ss_pred             CCCCccEEEECCccccchHHHH-HhccCCeeEEEecCHHH-HhhhhHhhCcee------EEEEcCHHHHHHHhhhccEEE
Confidence            4566789999999999999998 57999999999987643 222222222111      111223356889999999996


Q ss_pred             Ec--cCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          150 LH--PVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       150 l~--~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      -+  +| ....-.++.++++++||||+++|+++
T Consensus       237 gaVLIp-gakaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         237 GAVLIP-GAKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             EEEEec-CCCCceehhHHHHHhcCCCcEEEEEE
Confidence            44  45 35567788899999999999999994

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.99  E-value=4.9e-05  Score=70.59  Aligned_cols=105  Identities=18%  Similarity=0.184  Sum_probs=67.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ..++++|||.|.+|+.+++.+...++ .+|.+|++++.. .+.+.+.+    ...+   .......++++.+++||+|+.
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~-a~~~a~~~----~~~g---~~~~~~~~~~~av~~aDIVi~  195 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK-AEALAAEL----RAQG---FDAEVVTDLEAAVRQADIISC  195 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHH----HhcC---CceEEeCCHHHHHhcCCEEEE
Confidence            46899999999999999986543345 579999998654 33333322    1111   112335788999999999988


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV  191 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~  191 (294)
                      +.|.+   ..++..+   .++||+ +||+.-........+-
T Consensus       196 aT~s~---~pvl~~~---~l~~g~-~i~~ig~~~~~~~El~  229 (314)
T PRK06141        196 ATLST---EPLVRGE---WLKPGT-HLDLVGNFTPDMRECD  229 (314)
T ss_pred             eeCCC---CCEecHH---HcCCCC-EEEeeCCCCcccccCC
Confidence            77732   5566553   468998 4554333333333333

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.99  E-value=4.3e-05  Score=67.16  Aligned_cols=105  Identities=13%  Similarity=0.113  Sum_probs=63.2

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+||| .|.||+.+|+.| ...|.+|++++++.+.. +.+...+...+...+ ..... ...+..+.++++|+|++++
T Consensus         1 MkI~IIGG~G~mG~ala~~L-~~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g-~~~~~-~~~~~~ea~~~aDvVilav   76 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRL-AKAGNKIIIGSRDLEKA-EEAAAKALEELGHGG-SDIKV-TGADNAEAAKRADVVILAV   76 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHH-HhCCCEEEEEEcCHHHH-HHHHHHHHhhccccC-CCceE-EEeChHHHHhcCCEEEEEC
Confidence            4799997 999999999998 46789999998876542 222111100000000 00001 1235678899999999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI  185 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v  185 (294)
                      |. .....++ ++.-..++ +.++|++.-|--.
T Consensus        77 p~-~~~~~~l-~~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        77 PW-DHVLKTL-ESLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             CH-HHHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence            93 3333333 23223344 5899999777433

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.98  E-value=3.3e-05  Score=74.62  Aligned_cols=97  Identities=22%  Similarity=0.281  Sum_probs=66.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.|++|+|+|.|.||+.+++.| ...|+ +|++++++.... ..+...+       +.   ......++.+.+.++|+|
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~---~~~~~~~~~~~l~~aDvV  246 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEEF-------GG---EAIPLDELPEALAEADIV  246 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHc-------CC---cEeeHHHHHHHhccCCEE
Confidence            37899999999999999999997 57897 799999876442 2222211       11   111224566778999999


Q ss_pred             EEccCCCccccccccHHHHhcC-----CCCcEEEEcCC
Q 022672          149 SLHPVLDKTTYHLINKERLATM-----KKEAILVNCSR  181 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~m-----k~gailIN~aR  181 (294)
                      +.|+|.   ...++..+.++.+     +.+.++||.+-
T Consensus       247 I~aT~s---~~~~i~~~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        247 ISSTGA---PHPIIGKGMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             EECCCC---CCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence            999863   3455677766543     24567777764

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.97  E-value=7.2e-05  Score=68.45  Aligned_cols=120  Identities=16%  Similarity=0.177  Sum_probs=72.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|+|||.|.||..+|..|+ ..|.+|..++++.+. .+..... +..+ ..+..........+.+++ +.+|+|++++|
T Consensus         1 m~I~IiG~G~~G~~~a~~L~-~~g~~V~~~~r~~~~-~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~-~~~d~vila~k   75 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALA-QAGHDVTLVARRGAH-LDALNEN-GLRL-EDGEITVPVLAADDPAEL-GPQDLVILAVK   75 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEECChHH-HHHHHHc-CCcc-cCCceeecccCCCChhHc-CCCCEEEEecc
Confidence            36999999999999999984 678999999986433 2221110 1001 011100001123456665 89999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  201 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g  201 (294)
                      . .++..++ +.....+.+++.+|....| +-.++.+.+.+....+.+
T Consensus        76 ~-~~~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~  120 (304)
T PRK06522         76 A-YQLPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG  120 (304)
T ss_pred             c-ccHHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence            3 3444433 4444556777888888776 333555666665545443

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.93  E-value=7.2e-05  Score=68.17  Aligned_cols=80  Identities=16%  Similarity=0.302  Sum_probs=65.9

Q ss_pred             CcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||- ..+|+.+|.+| ..-++.|+.++.+.                            .++++.+++||
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL-~~~~atVt~chs~t----------------------------~~l~~~~~~AD  203 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLL-LNENATVTYCHSKT----------------------------KNLAELTKQAD  203 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHH-HHCCCEEEEEeCCc----------------------------hhHHHHHHhCC
Confidence            46799999999999 46899999998 57789998875321                            36889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.++.    ..++++.+++   |+|+++||++.-.
T Consensus       204 IvI~AvG----~p~~i~~~~i---k~gavVIDvGi~~  233 (284)
T PRK14190        204 ILIVAVG----KPKLITADMV---KEGAVVIDVGVNR  233 (284)
T ss_pred             EEEEecC----CCCcCCHHHc---CCCCEEEEeeccc
Confidence            9999997    3457888776   8999999998655

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.90  E-value=3.2e-05  Score=70.30  Aligned_cols=91  Identities=25%  Similarity=0.288  Sum_probs=65.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      -|.||||+|||||.-|++=|..| +-.|.+|++=-+......+...             ..++ .+.+.+|+.+++|+|.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~kA~-------------~dGf-~V~~v~ea~k~ADvim   79 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKKAK-------------EDGF-KVYTVEEAAKRADVVM   79 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHHHH-------------hcCC-EeecHHHHhhcCCEEE
Confidence            59999999999999999999998 7899997754333322221111             1122 2468999999999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEE
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAIL  176 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gail  176 (294)
                      +.+|. .....++.++.-..||.|+.|
T Consensus        80 ~L~PD-e~q~~vy~~~I~p~Lk~G~aL  105 (338)
T COG0059          80 ILLPD-EQQKEVYEKEIAPNLKEGAAL  105 (338)
T ss_pred             EeCch-hhHHHHHHHHhhhhhcCCceE
Confidence            99994 334455556777788888755

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.88  E-value=4.4e-05  Score=71.63  Aligned_cols=105  Identities=14%  Similarity=0.115  Sum_probs=64.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhh-hhhhhhh-cCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKA-NGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ++|+|||.|.+|..+|..|+ ..| +++.|.+++.. .+...+. ....... ....+.......++++.++.+|+|+++
T Consensus         8 mkI~IiGaGa~G~alA~~La-~~g-~v~l~~~~~~~-~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila   84 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICA-RRG-PTLQWVRSAET-ADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG   84 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHH-HCC-CEEEEeCCHHH-HHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence            57999999999999999985 556 57777765433 2211110 0000000 000011122346788889999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +| ...++..+ ++....+++++.+|++..|=
T Consensus        85 vp-s~~~~~vl-~~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         85 VP-SHGFRGVL-TELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             eC-HHHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence            99 33444443 44445678888899998864

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.88  E-value=0.00012  Score=63.01  Aligned_cols=93  Identities=20%  Similarity=0.303  Sum_probs=65.0

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc------cCCHHH
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR------ASSMDE  140 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~e  140 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..-|+.|+.+|.+.--..            ..+.. .....      ..++.+
T Consensus        57 ~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~~------------~~~~~-~~hs~t~~~~~~~~l~~  122 (197)
T cd01079          57 GNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQVF------------TRGES-IRHEKHHVTDEEAMTLD  122 (197)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCccccc------------ccccc-cccccccccchhhHHHH
Confidence            568999999999996 5799999988 578999999874321100            00000 00000      112789


Q ss_pred             HhhcCCEEEEccCCCcccccc-ccHHHHhcCCCCcEEEEcCC
Q 022672          141 VLREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSR  181 (294)
Q Consensus       141 ll~~aDiV~l~~Plt~~t~~l-i~~~~l~~mk~gailIN~aR  181 (294)
                      .+++||+|+.+++-    .++ +..+.   .|+|+++||+|-
T Consensus       123 ~~~~ADIVIsAvG~----~~~~i~~d~---ik~GavVIDVGi  157 (197)
T cd01079         123 CLSQSDVVITGVPS----PNYKVPTEL---LKDGAICINFAS  157 (197)
T ss_pred             HhhhCCEEEEccCC----CCCccCHHH---cCCCcEEEEcCC
Confidence            99999999999982    445 67665   479999999973

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.87  E-value=0.00016  Score=66.72  Aligned_cols=134  Identities=13%  Similarity=0.203  Sum_probs=90.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~~  152 (294)
                      ++|||||+|++|+-+|+.| ...|..++.+||..-....   ..|            +....+.+.+++ +.+|+|++|+
T Consensus        53 l~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssaa---~~y------------g~~~ft~lhdlcerhpDvvLlct  116 (480)
T KOG2380|consen   53 LVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSAA---EKY------------GSAKFTLLHDLCERHPDVVLLCT  116 (480)
T ss_pred             eEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHHH---HHh------------cccccccHHHHHhcCCCEEEEEe
Confidence            4799999999999999998 6889999999987533211   111            122346677776 6799999998


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCC--C---CCCccCCCCeEEcc
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--M---KPGLSEMKNAIVVP  227 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~---~~~L~~~~nviiTP  227 (294)
                      .- ..+..++..--++++|.|++|+++-.-....-.++.+-|-+.      .|....-|.  |   ++....+|=|++--
T Consensus       117 si-lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGPksvnh~wqglpfVydkv  189 (480)
T KOG2380|consen  117 SI-LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGPKSVNHEWQGLPFVYDKV  189 (480)
T ss_pred             hh-hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCCCcCCCccccCceEEEEe
Confidence            62 334444433345678999999999888777777777777442      244444454  2   23455577666655


Q ss_pred             CCC
Q 022672          228 HIA  230 (294)
Q Consensus       228 Hia  230 (294)
                      .++
T Consensus       190 Rig  192 (480)
T KOG2380|consen  190 RIG  192 (480)
T ss_pred             ecc
Confidence            554

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.86  E-value=7.3e-05  Score=67.98  Aligned_cols=80  Identities=19%  Similarity=0.312  Sum_probs=64.8

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..-|+.|+.+..+                            ..++.+..++||
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL-~~~~AtVti~hs~----------------------------T~~l~~~~~~AD  202 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALL-LNANATVDICHIF----------------------------TKDLKAHTKKAD  202 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCC----------------------------CcCHHHHHhhCC
Confidence            468999999999998 8999999998 5678999876432                            136889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.++.    ..+++..++   .|+|+++||++--.
T Consensus       203 IvV~AvG----kp~~i~~~~---vk~gavvIDvGin~  232 (281)
T PRK14183        203 IVIVGVG----KPNLITEDM---VKEGAIVIDIGINR  232 (281)
T ss_pred             EEEEecC----cccccCHHH---cCCCcEEEEeeccc
Confidence            9999997    355677766   47999999998433

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.84  E-value=0.0001  Score=68.11  Aligned_cols=96  Identities=11%  Similarity=0.082  Sum_probs=68.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ...++++|||.|.+|+..++.+...++. +|.+|+++..+ .+.+.+.+    ...   ..... ..+++++++++|+|+
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~-a~~~a~~~----~~~---~~~~~-~~~~~~av~~aDiVi  193 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS-AAAFCAHA----RAL---GPTAE-PLDGEAIPEAVDLVV  193 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHH----Hhc---CCeeE-ECCHHHHhhcCCEEE
Confidence            4568999999999999999987444664 69999998654 33343322    111   11111 468999999999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      .|.|.   ...++..    .+|||+.++.++.-
T Consensus       194 taT~s---~~Pl~~~----~~~~g~hi~~iGs~  219 (304)
T PRK07340        194 TATTS---RTPVYPE----AARAGRLVVAVGAF  219 (304)
T ss_pred             EccCC---CCceeCc----cCCCCCEEEecCCC
Confidence            99984   3466653    36999999999743

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.83  E-value=0.00013  Score=68.28  Aligned_cols=101  Identities=29%  Similarity=0.358  Sum_probs=70.8

Q ss_pred             CcccCCCEEEEEcC-ChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           68 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        68 g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      +..+.||+|.|+|. |.||+.+++.|+...| .+++.++++... ...+...+       .     .....++++.+.++
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~el-------~-----~~~i~~l~~~l~~a  216 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAEL-------G-----GGKILSLEEALPEA  216 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHHh-------c-----cccHHhHHHHHccC
Confidence            45799999999999 8999999999853456 488888886543 22211111       0     01124688999999


Q ss_pred             CEEEEccCCCccccc-cccHHHHhcCCCCcEEEEcCCCcccCH
Q 022672          146 DVISLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       146 DiV~l~~Plt~~t~~-li~~~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      |+|+.+..   .... +++.+.+   +++.++||.|+..=||.
T Consensus       217 DiVv~~ts---~~~~~~I~~~~l---~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        217 DIVVWVAS---MPKGVEIDPETL---KKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CEEEECCc---CCcCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence            99987764   2234 4777654   79999999999876764

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.83  E-value=0.00015  Score=65.98  Aligned_cols=80  Identities=19%  Similarity=0.332  Sum_probs=65.0

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..-++.|+.+...                            ..++.+..++||
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL-~~~~atVtichs~----------------------------T~~l~~~~~~AD  202 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLL-LNENATVTIAHSR----------------------------TKDLPQVAKEAD  202 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence            568999999999996 5799999998 5778999887532                            136889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.+++    -.+++..+.   .|+|+++||++--.
T Consensus       203 IvI~AvG----~~~~i~~~~---vk~GavVIDvGin~  232 (284)
T PRK14170        203 ILVVATG----LAKFVKKDY---IKPGAIVIDVGMDR  232 (284)
T ss_pred             EEEEecC----CcCccCHHH---cCCCCEEEEccCcc
Confidence            9999998    245677766   47999999998654

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.83  E-value=0.00013  Score=62.74  Aligned_cols=107  Identities=17%  Similarity=0.135  Sum_probs=65.1

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcc---ccccCCHHHHhhc
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT---WKRASSMDEVLRE  144 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ell~~  144 (294)
                      ..+.++++.|+|. |.+|+.+++.|+ ..|.+|+.++|+... .+.+.+.+..    .......   .....++.+.+++
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~-~~g~~V~l~~R~~~~-~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~   97 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLA-REGARVVLVGRDLER-AQKAADSLRA----RFGEGVGAVETSDDAARAAAIKG   97 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCHHH-HHHHHHHHHh----hcCCcEEEeeCCCHHHHHHHHhc
Confidence            3578999999995 999999999984 678899999887543 2222221110    0000010   1112344578899


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  185 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v  185 (294)
                      +|+|+.+.|....+  .+  ..-...+++.+++|+.+...+
T Consensus        98 ~diVi~at~~g~~~--~~--~~~~~~~~~~vv~D~~~~~~~  134 (194)
T cd01078          98 ADVVFAAGAAGVEL--LE--KLAWAPKPLAVAADVNAVPPV  134 (194)
T ss_pred             CCEEEECCCCCcee--ch--hhhcccCceeEEEEccCCCCC
Confidence            99999998854321  11  111124557778887776544

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.81  E-value=9.8e-05  Score=68.69  Aligned_cols=105  Identities=23%  Similarity=0.307  Sum_probs=63.3

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhh-hhhhhhhcCCCCccccccCCHHHHh-hcCCEEEEcc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  152 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~~  152 (294)
                      +|+|||.|.||..+|..| ...|.+|..|+++... .+..... .+.........+.......++++.+ ..+|+|++++
T Consensus         2 kI~IiGaGa~G~ala~~L-~~~g~~V~l~~r~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiav   79 (326)
T PRK14620          2 KISILGAGSFGTAIAIAL-SSKKISVNLWGRNHTT-FESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAV   79 (326)
T ss_pred             EEEEECcCHHHHHHHHHH-HHCCCeEEEEecCHHH-HHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEe
Confidence            699999999999999998 4678999999986532 2211110 0000000000111122345677766 5899999999


Q ss_pred             CCCccccccccHHHHh-cCCCCcEEEEcCCCc
Q 022672          153 VLDKTTYHLINKERLA-TMKKEAILVNCSRGP  183 (294)
Q Consensus       153 Plt~~t~~li~~~~l~-~mk~gailIN~aRG~  183 (294)
                      |. .++...+ ++... .+++++.+|.+..|=
T Consensus        80 ks-~~~~~~l-~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         80 PT-QQLRTIC-QQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             CH-HHHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence            93 3444443 33333 567777777776664

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.81  E-value=0.00016  Score=65.99  Aligned_cols=78  Identities=21%  Similarity=0.256  Sum_probs=53.6

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +..+.++++.|+|.|.+|+++++.| ...| .+|++++|+.... +.+.+.+.    ...  ...+  ..++.+.+.++|
T Consensus       118 ~~~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~a-~~l~~~~~----~~~--~~~~--~~~~~~~~~~~D  187 (278)
T PRK00258        118 GVDLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVERA-EELAKLFG----ALG--KAEL--DLELQEELADFD  187 (278)
T ss_pred             CCCCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhh----hcc--ceee--cccchhccccCC
Confidence            3468899999999999999999998 5888 6899999986542 22222211    000  0111  113456778999


Q ss_pred             EEEEccCCC
Q 022672          147 VISLHPVLD  155 (294)
Q Consensus       147 iV~l~~Plt  155 (294)
                      +|+.++|..
T Consensus       188 ivInaTp~g  196 (278)
T PRK00258        188 LIINATSAG  196 (278)
T ss_pred             EEEECCcCC
Confidence            999999954

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.80  E-value=0.00013  Score=67.69  Aligned_cols=99  Identities=20%  Similarity=0.203  Sum_probs=60.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      +++||||.|..|+.-++.+..-++. +|.+|++++.. .+.+.+..    ..   ....+....+.++.+++||+|+.|.
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~-~~~~~~~~----~~---~~~~v~~~~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPER-AEAFAARL----RD---LGVPVVAVDSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHH-HHHHHHHH----HC---CCTCEEEESSHHHHHTTSSEEEE--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhH-HHHHHHhh----cc---ccccceeccchhhhcccCCEEEEcc
Confidence            4899999999999999887656766 68999998653 34444322    22   1334456689999999999999998


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                      |.+..+ -+++.+   .++||+.++.++....
T Consensus       201 ~s~~~~-P~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  201 PSTTPA-PVFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             --SSEE-ESB-GG---GS-TT-EEEE-S-SST
T ss_pred             CCCCCC-ccccHH---HcCCCcEEEEecCCCC
Confidence            854332 667655   5789999999986543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.78  E-value=0.00014  Score=66.34  Aligned_cols=78  Identities=17%  Similarity=0.300  Sum_probs=64.4

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..-++.|+.++.+.                            .++++..++||
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL-~~~~atVt~chs~T----------------------------~~l~~~~~~AD  204 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLL-TEMNATVTLCHSKT----------------------------QNLPSIVRQAD  204 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCC
Confidence            468999999999995 6899999998 57889999876421                            36889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +|+.++.    ..+++..++   .|+|+++||++-
T Consensus       205 IvIsAvG----k~~~i~~~~---ik~gavVIDvGi  232 (284)
T PRK14177        205 IIVGAVG----KPEFIKADW---ISEGAVLLDAGY  232 (284)
T ss_pred             EEEEeCC----CcCccCHHH---cCCCCEEEEecC
Confidence            9999997    355677766   579999999975

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.78  E-value=0.00036  Score=71.56  Aligned_cols=130  Identities=13%  Similarity=0.171  Sum_probs=83.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCC-C-------ccccccCCHHHHh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQ-P-------VTWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~-~-------~~~~~~~~l~ell  142 (294)
                      ++|+|||.|.||+.+|..++...|++|+.||++.......   ......... ..+.. +       .......+++ .+
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-~~  382 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGV-KRRHMTPAERDNQMALITGTTDYR-GF  382 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHcCeEEeCChH-Hh
Confidence            5899999999999999986434799999999986532111   111111111 11110 0       1122345664 57


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  208 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~  208 (294)
                      ++||+|+=++|..-+.+.-+-++.-+.++++++|....  +-+....|.+.++. .-+..++--|.
T Consensus       383 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnT--S~l~i~~la~~~~~-p~r~~g~Hffn  445 (699)
T TIGR02440       383 KDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNT--SSLPIGQIAAAASR-PENVIGLHYFS  445 (699)
T ss_pred             ccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCC--CCCCHHHHHHhcCC-cccEEEEecCC
Confidence            89999999999888888777777778889998886433  33556667777643 33455655553

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.76  E-value=0.00021  Score=65.18  Aligned_cols=79  Identities=14%  Similarity=0.220  Sum_probs=64.1

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..-++.|+.+..+                            ..++.+..++||
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL-~~~~ATVtichs~----------------------------T~~L~~~~~~AD  204 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALL-LKENCSVTICHSK----------------------------THNLSSITSKAD  204 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence            457999999999995 5799999988 5778999877532                            136889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      +|+.++.    -.+++..++   .|+|+++||+|--
T Consensus       205 IvV~AvG----kp~~i~~~~---vk~GavVIDvGin  233 (288)
T PRK14171        205 IVVAAIG----SPLKLTAEY---FNPESIVIDVGIN  233 (288)
T ss_pred             EEEEccC----CCCccCHHH---cCCCCEEEEeecc
Confidence            9999997    246787776   4799999999743

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.76  E-value=0.00023  Score=64.69  Aligned_cols=80  Identities=20%  Similarity=0.314  Sum_probs=65.0

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..-|+.|+.++.+.                            .++.+..++||
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL-~~~~AtVt~chs~T----------------------------~~l~~~~~~AD  203 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLL-LNENATVTICHSKT----------------------------KNLKEVCKKAD  203 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCC
Confidence            457999999999995 5899999987 57789998876421                            36889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.+++    -.+++..++   .|+|+++||++--.
T Consensus       204 IvIsAvG----kp~~i~~~~---ik~gavVIDvGin~  233 (278)
T PRK14172        204 ILVVAIG----RPKFIDEEY---VKEGAIVIDVGTSS  233 (278)
T ss_pred             EEEEcCC----CcCccCHHH---cCCCcEEEEeeccc
Confidence            9999998    245687776   58999999997433

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.75  E-value=0.00016  Score=65.96  Aligned_cols=81  Identities=25%  Similarity=0.319  Sum_probs=65.8

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..-++.|+.+..+                            ..++++..++||
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL-~~~~aTVtichs~----------------------------T~~l~~~~~~AD  200 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALL-LREDATVTLAHSK----------------------------TQDLPAVTRRAD  200 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence            468999999999985 6899999998 5778999877532                            136889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                      +|++++.    ..++++.+++   |+|+++||++.-.+
T Consensus       201 IvIsAvG----kp~~i~~~~v---k~GavVIDVGin~~  231 (287)
T PRK14173        201 VLVVAVG----RPHLITPEMV---RPGAVVVDVGINRV  231 (287)
T ss_pred             EEEEecC----CcCccCHHHc---CCCCEEEEccCccc
Confidence            9999997    2467777764   89999999986553

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.74  E-value=0.00018  Score=65.49  Aligned_cols=80  Identities=16%  Similarity=0.293  Sum_probs=64.9

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..-|+.|+.+..+                            ..++++..++||
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL-~~~~atVtichs~----------------------------T~~l~~~~~~AD  201 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLM-VNHDATVTIAHSK----------------------------TRNLKQLTKEAD  201 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCC
Confidence            457999999999995 5799999998 5779999877532                            136889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+++++    -.++++.++   +|+|+++||++--.
T Consensus       202 IvI~AvG----~p~~i~~~~---vk~GavVIDvGin~  231 (282)
T PRK14169        202 ILVVAVG----VPHFIGADA---VKPGAVVIDVGISR  231 (282)
T ss_pred             EEEEccC----CcCccCHHH---cCCCcEEEEeeccc
Confidence            9999998    355687775   57999999997543

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=97.74  E-value=0.00011  Score=69.14  Aligned_cols=100  Identities=17%  Similarity=0.191  Sum_probs=68.7

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccH
Q 022672           85 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  164 (294)
Q Consensus        85 G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~  164 (294)
                      |..+|+.| ...|.+|++||++.....+...+.    +...+     .....+..+++++||+|++++|....++.++ .
T Consensus        32 G~~MA~~L-a~aG~~V~v~Dr~~~~l~~~~~~~----l~~~G-----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~  100 (342)
T PRK12557         32 GSRMAIEF-AEAGHDVVLAEPNRSILSEELWKK----VEDAG-----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-K  100 (342)
T ss_pred             HHHHHHHH-HhCCCeEEEEECCHHHhhHHHHHH----HHHCC-----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-H
Confidence            67889887 467899999998765321101110    11111     2334578888999999999999544366666 4


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCH-HHHHHHHH
Q 022672          165 ERLATMKKEAILVNCSRGPVIDE-VALVEHLK  195 (294)
Q Consensus       165 ~~l~~mk~gailIN~aRG~~vd~-~aL~~aL~  195 (294)
                      +....+++++++||++.++.... +.+.+.+.
T Consensus       101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        101 NILPHLPENAVICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence            67788999999999999876655 55556663

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.74  E-value=0.00016  Score=66.23  Aligned_cols=80  Identities=20%  Similarity=0.241  Sum_probs=65.0

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..-|+.|+.+...                            ..++++..++||
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~AD  203 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALML-LAANATVTIAHSR----------------------------TQDLASITREAD  203 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence            468999999999995 5799999998 5779999887532                            136889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+++++-    .+++..++   +|+|+++||+|--.
T Consensus       204 IvIsAvGk----p~~i~~~~---ik~gavVIDvGin~  233 (297)
T PRK14186        204 ILVAAAGR----PNLIGAEM---VKPGAVVVDVGIHR  233 (297)
T ss_pred             EEEEccCC----cCccCHHH---cCCCCEEEEecccc
Confidence            99999982    35777766   57999999998654

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.74  E-value=0.00038  Score=65.48  Aligned_cols=163  Identities=18%  Similarity=0.254  Sum_probs=112.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hcCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l  150 (294)
                      ..||+||+|-||+.+|..+ ...|.+|.+|+|+..+. +.|...       +... -....+.+++|++   +.-.-|++
T Consensus         4 ~~iGviGLaVMG~NLaLNi-~~~G~~VavyNRt~~kt-d~f~~~-------~~~~-k~i~~~~sieefV~~Le~PRkI~l   73 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNI-ADHGYTVAVYNRTTEKT-DEFLAE-------RAKG-KNIVPAYSIEEFVASLEKPRKILL   73 (473)
T ss_pred             cceeeEehhhhhHHHHHHH-HhcCceEEEEeCCHHHH-HHHHHh-------CccC-CCccccCcHHHHHHHhcCCceEEE
Confidence            4699999999999999997 58899999999987653 344322       1211 1233456777764   56677877


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  230 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia  230 (294)
                      ++-.......+| ++.+..|.+|-++|+-+...--|+..-.++|.+..|.+.+.-|...|--.-+    =|.+     +-
T Consensus        74 MVkAG~~VD~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~----GPSi-----Mp  143 (473)
T COG0362          74 MVKAGTPVDAVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARH----GPSI-----MP  143 (473)
T ss_pred             EEecCCcHHHHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccccc----CCCc-----CC
Confidence            775432112333 6788889999999999999999999999999999999999999988853211    0111     12


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 022672          231 SASKWTREGMATLAALNVLGKIKGYPI  257 (294)
Q Consensus       231 ~~t~~~~~~~~~~~~~nl~~~~~g~~~  257 (294)
                      |-+.++++...-. .+.|.+-..|+|+
T Consensus       144 GG~~eay~~v~pi-l~~IaAk~~g~pC  169 (473)
T COG0362         144 GGQKEAYELVAPI-LTKIAAKVDGEPC  169 (473)
T ss_pred             CCCHHHHHHHHHH-HHHHHhhcCCCCc
Confidence            4455565554443 3445555566665

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.74  E-value=0.00017  Score=65.65  Aligned_cols=79  Identities=20%  Similarity=0.281  Sum_probs=64.6

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..-++.|+.+..+.                            .++++..++||
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL-~~~~atVt~chs~T----------------------------~nl~~~~~~AD  202 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATML-LNAGATVSVCHIKT----------------------------KDLSLYTRQAD  202 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCC
Confidence            457999999999995 5799999998 57799998875421                            36889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      +|+.++.    -.+++..++   .|+|+++||++--
T Consensus       203 IvIsAvG----kp~~i~~~~---vk~GavVIDvGin  231 (282)
T PRK14166        203 LIIVAAG----CVNLLRSDM---VKEGVIVVDVGIN  231 (282)
T ss_pred             EEEEcCC----CcCccCHHH---cCCCCEEEEeccc
Confidence            9999998    356687775   5799999999743

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.74  E-value=0.00047  Score=70.83  Aligned_cols=130  Identities=14%  Similarity=0.124  Sum_probs=85.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell  142 (294)
                      ++|+|||.|.||..+|..++...|++|+.||++.......   ....+.... ..+...        .......++ +.+
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~  387 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKV-KRRHLKPSERDKQMALISGTTDY-RGF  387 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhcEEEeCCh-HHh
Confidence            6899999999999999987436799999999976532111   111111111 111100        012234566 457


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  208 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~  208 (294)
                      ++||+|+=++|.+.+.+.-+-++.-+.++|+++|...  -+-+....|.+.+.. .-+..++--|.
T Consensus       388 ~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasn--TS~l~i~~la~~~~~-p~r~ig~Hff~  450 (708)
T PRK11154        388 KHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASN--TSSLPIGQIAAAAAR-PEQVIGLHYFS  450 (708)
T ss_pred             ccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHHhcCc-ccceEEEecCC
Confidence            9999999999988888877777777889999998654  344666777777643 33456666664

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.72  E-value=0.00053  Score=70.54  Aligned_cols=129  Identities=18%  Similarity=0.212  Sum_probs=84.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHH---HHHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE---KFVTAYGQFLKANGEQP--------VTWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell  142 (294)
                      ++|+|||.|.||..+|..++ ..|++|+.||.+......   .....+.... ..+...        .......++++ +
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~-~  390 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAAKLLNKQV-ERGKIDGAKMAGVLSSIRPTLDYAG-F  390 (715)
T ss_pred             ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCChhhHHHHHhCeEEeCCHHH-h
Confidence            68999999999999999875 679999999998754221   1111111111 111110        01223456644 6


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  208 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~  208 (294)
                      ++||+|+=++|..-+.+.-+-++.-+.++++++|...  -+.+....|.+.+.. .-+..++--|.
T Consensus       391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~-p~r~~g~Hff~  453 (715)
T PRK11730        391 ERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASN--TSTISISLLAKALKR-PENFCGMHFFN  453 (715)
T ss_pred             cCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCC-CccEEEEecCC
Confidence            9999999999988888877777777889999888544  334556677777743 33455555553

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.71  E-value=0.0002  Score=65.24  Aligned_cols=78  Identities=15%  Similarity=0.283  Sum_probs=63.8

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..-++.|+.+..+.                            .++.+..++||
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL-~~~~ATVt~chs~T----------------------------~dl~~~~k~AD  203 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLL-LNAKATVTTCHRFT----------------------------TDLKSHTTKAD  203 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEEcCCC----------------------------CCHHHHhhhcC
Confidence            458999999999995 5899999998 57789998875321                            36888899999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +|+.+++    -.+++..++   .|+|+++||++-
T Consensus       204 IvIsAvG----kp~~i~~~~---vk~gavVIDvGi  231 (282)
T PRK14180        204 ILIVAVG----KPNFITADM---VKEGAVVIDVGI  231 (282)
T ss_pred             EEEEccC----CcCcCCHHH---cCCCcEEEEecc
Confidence            9999998    345677765   579999999974

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.70  E-value=0.00032  Score=65.39  Aligned_cols=96  Identities=16%  Similarity=0.162  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ..++++|||.|.+|+..++.++...++ +|.+|++++... +++.+.+    ....  +.......+++++++++|+|+.
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a-~~~~~~~----~~~~--~~~~~~~~~~~~~~~~aDiVi~  198 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKA-YAFAQEI----QSKF--NTEIYVVNSADEAIEEADIIVT  198 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHhc--CCcEEEeCCHHHHHhcCCEEEE
Confidence            467899999999999988776444565 688899987543 3333221    1111  1222345789999999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |.|..   .-++.    +.+|+|+.++.++.
T Consensus       199 aT~s~---~p~i~----~~l~~G~hV~~iGs  222 (325)
T PRK08618        199 VTNAK---TPVFS----EKLKKGVHINAVGS  222 (325)
T ss_pred             ccCCC---CcchH----HhcCCCcEEEecCC
Confidence            99843   44554    45699999988864

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.70  E-value=0.00021  Score=65.45  Aligned_cols=80  Identities=18%  Similarity=0.231  Sum_probs=65.2

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..-++.|+.+..+.                            .++.+..++||
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL-~~~~aTVt~chs~T----------------------------~~l~~~~~~AD  205 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLL-LGENCTVTTVHSAT----------------------------RDLADYCSKAD  205 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHH-hhCCCEEEEeCCCC----------------------------CCHHHHHhhCC
Confidence            468999999999995 5899999987 57899998876421                            36889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.++.    -.+++..+++   |+|+++||++--.
T Consensus       206 IvVsAvG----kp~~i~~~~i---k~gaiVIDVGin~  235 (294)
T PRK14187        206 ILVAAVG----IPNFVKYSWI---KKGAIVIDVGINS  235 (294)
T ss_pred             EEEEccC----CcCccCHHHc---CCCCEEEEecccc
Confidence            9999998    3456777764   7999999997543

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.67  E-value=0.00029  Score=65.50  Aligned_cols=95  Identities=13%  Similarity=0.145  Sum_probs=68.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      -++++|+|.|..++.-++.+...+.. +|.+|++++... +.+.+.    +...   ........+.++.+++||+|+.+
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~~~~~----~~~~---~~~v~~~~~~~~av~~ADIV~ta  199 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL-EEYRQY----AQAL---GFAVNTTLDAAEVAHAANLIVTT  199 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhc---CCcEEEECCHHHHhcCCCEEEEe
Confidence            46899999999999999887555555 799999987653 333321    1111   12333457899999999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|   .+.-+++.+.   +|||+.++.++.
T Consensus       200 T~---s~~P~~~~~~---l~~G~hi~~iGs  223 (315)
T PRK06823        200 TP---SREPLLQAED---IQPGTHITAVGA  223 (315)
T ss_pred             cC---CCCceeCHHH---cCCCcEEEecCC
Confidence            76   4457776654   689999998873

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.67  E-value=0.00045  Score=62.66  Aligned_cols=112  Identities=21%  Similarity=0.234  Sum_probs=69.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV  148 (294)
                      ...+++++|+|.|.+|++++..| ...|.+|++++++..+. +.+.+.+    ...+  ..   ...++++. +.++|+|
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L-~~~g~~v~v~~R~~~~~-~~la~~~----~~~~--~~---~~~~~~~~~~~~~Div  182 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPL-LKADCNVIIANRTVSKA-EELAERF----QRYG--EI---QAFSMDELPLHRVDLI  182 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHH----hhcC--ce---EEechhhhcccCccEE
Confidence            35689999999999999999998 46788999999876432 2222211    1101  00   11233332 3589999


Q ss_pred             EEccCCC--ccccc-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          149 SLHPVLD--KTTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       149 ~l~~Plt--~~t~~-li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      +.++|..  ++... .++   ...++++.+++++...... + .|.+..++.
T Consensus       183 Inatp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~~-T-~ll~~A~~~  229 (270)
T TIGR00507       183 INATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPGE-T-PFLAEAKSL  229 (270)
T ss_pred             EECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCCC-C-HHHHHHHHC
Confidence            9999964  11111 122   3456788889988776543 3 466655554

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.66  E-value=0.00024  Score=65.16  Aligned_cols=80  Identities=16%  Similarity=0.260  Sum_probs=65.1

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..-|+.|+.+..+                            ..++++..++||
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL-~~~~ATVtvchs~----------------------------T~nl~~~~~~AD  212 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLL-LKADATVTVVHSR----------------------------TPDPESIVREAD  212 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence            468999999999996 5799999988 5779999987532                            136889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.++.-    .+++..++   .|+|+++||+|--.
T Consensus       213 Ivv~AvGk----~~~i~~~~---vk~gavVIDvGin~  242 (299)
T PLN02516        213 IVIAAAGQ----AMMIKGDW---IKPGAAVIDVGTNA  242 (299)
T ss_pred             EEEEcCCC----cCccCHHH---cCCCCEEEEeeccc
Confidence            99999972    36787776   57999999998543

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.66  E-value=0.0003  Score=64.13  Aligned_cols=112  Identities=20%  Similarity=0.261  Sum_probs=79.7

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhc--CCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  144 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~--~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  144 (294)
                      +.++.||++.|||-+ .+|+.+|.+|. .  .++.|+.+...                            ..++++.+++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~-~~~~~atVtvchs~----------------------------T~~l~~~~k~  203 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLT-RRSENATVTLCHTG----------------------------TRDLAAHTRR  203 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHh-hccCCCEEEEeCCC----------------------------CCCHHHHHHh
Confidence            457999999999984 68999999884 4  68999877532                            1368899999


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeE
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI  224 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvi  224 (294)
                      ||+|+.++.-    .+++..++   +|+|+++||++.-.+          .+|++.   =||- .+      ..... -.
T Consensus       204 ADIvV~AvGk----p~~i~~~~---ik~GavVIDvGin~~----------~~gkl~---GDvd-~~------v~~~a-~~  255 (284)
T PRK14193        204 ADIIVAAAGV----AHLVTADM---VKPGAAVLDVGVSRA----------GDGKLV---GDVH-PD------VWEVA-GA  255 (284)
T ss_pred             CCEEEEecCC----cCccCHHH---cCCCCEEEEcccccc----------CCCcEE---eecC-Hh------HHhhC-CE
Confidence            9999999982    35787776   579999999986543          234433   3554 21      12222 26


Q ss_pred             EccCCCCCcHHH
Q 022672          225 VVPHIASASKWT  236 (294)
Q Consensus       225 iTPHia~~t~~~  236 (294)
                      +||--+|.-.-+
T Consensus       256 iTPVPGGVGp~T  267 (284)
T PRK14193        256 VSPNPGGVGPMT  267 (284)
T ss_pred             EeCCCCChhHHH
Confidence            899988865433

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.65  E-value=0.00023  Score=66.62  Aligned_cols=80  Identities=20%  Similarity=0.277  Sum_probs=65.0

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||=+ .+|+.+|.+| ..-++.|+.+..+                            ..++++..++||
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL-~~~~ATVTicHs~----------------------------T~nl~~~~r~AD  276 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLL-QREDATVSIVHSR----------------------------TKNPEEITREAD  276 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHH-HHCCCeEEEeCCC----------------------------CCCHHHHHhhCC
Confidence            468999999999995 5899999988 5788999887532                            136889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.++.    ..+++..++   .|+|+++||++--.
T Consensus       277 IVIsAvG----kp~~i~~d~---vK~GAvVIDVGIn~  306 (364)
T PLN02616        277 IIISAVG----QPNMVRGSW---IKPGAVVIDVGINP  306 (364)
T ss_pred             EEEEcCC----CcCcCCHHH---cCCCCEEEeccccc
Confidence            9999997    355677776   57999999997543

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.64  E-value=0.00027  Score=64.51  Aligned_cols=78  Identities=19%  Similarity=0.250  Sum_probs=63.6

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhc----CCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  142 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~----~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  142 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..    -+++|..+..+.                            .++.+.+
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL-~~~~~~~~AtVt~~hs~t----------------------------~~l~~~~  202 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALML-GAPGKFANATVTVCHSRT----------------------------PDLAEEC  202 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHH-hCCcccCCCEEEEEeCCc----------------------------hhHHHHH
Confidence            468999999999995 5799999988 45    678888765321                            3688999


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      ++||+|+.+++    ..+++..+++   |+|+++||++-
T Consensus       203 ~~ADIVI~AvG----~p~li~~~~v---k~GavVIDVGi  234 (286)
T PRK14184        203 READFLFVAIG----RPRFVTADMV---KPGAVVVDVGI  234 (286)
T ss_pred             HhCCEEEEecC----CCCcCCHHHc---CCCCEEEEeee
Confidence            99999999996    3567888776   89999999974

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.64  E-value=0.00034  Score=63.87  Aligned_cols=80  Identities=19%  Similarity=0.341  Sum_probs=63.9

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcC----CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  142 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  142 (294)
                      +.++.||++.|||-+ .+|+.+|.+|. .-    ++.|+.+..+                            ..++++.+
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~-~~~~~~~AtVtvchs~----------------------------T~~l~~~~  198 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLM-QKHPDTNATVTLLHSQ----------------------------SENLTEIL  198 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHH-hCcCCCCCEEEEeCCC----------------------------CCCHHHHH
Confidence            468999999999996 57999999884 44    7888876532                            13688999


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      ++||+|+.+++-    .+++..++   .|+|+++||++--.
T Consensus       199 ~~ADIvV~AvG~----p~~i~~~~---ik~GavVIDvGin~  232 (287)
T PRK14181        199 KTADIIIAAIGV----PLFIKEEM---IAEKAVIVDVGTSR  232 (287)
T ss_pred             hhCCEEEEccCC----cCccCHHH---cCCCCEEEEecccc
Confidence            999999999972    46787776   47999999998544

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.64  E-value=0.00028  Score=69.49  Aligned_cols=109  Identities=21%  Similarity=0.229  Sum_probs=68.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhh--hcCCCC---cccc--ccCC-----
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK--ANGEQP---VTWK--RASS-----  137 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~--~~~~-----  137 (294)
                      ...+.+|.|+|.|.+|...++.+ +.+|++|+++|.++.... . .+.++....  .....+   .++.  ...+     
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~A-k~lGA~V~a~D~~~~rle-~-aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~  238 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAA-GSLGAIVRAFDTRPEVAE-Q-VESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAE  238 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H-HHHcCCeEEEeccccccccccchhhhcchhHHHHH
Confidence            45799999999999999998874 899999999999875432 1 122222100  000000   0000  0001     


Q ss_pred             ---HHHHhhcCCEEEEccCCCcc-ccccccHHHHhcCCCCcEEEEcCC
Q 022672          138 ---MDEVLREADVISLHPVLDKT-TYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       138 ---l~ell~~aDiV~l~~Plt~~-t~~li~~~~l~~mk~gailIN~aR  181 (294)
                         +.+.++++|+|+.+..-... .-.++.++.++.||+|+++|+++=
T Consensus       239 ~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        239 MALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence               12223579999998863221 234557999999999999999963

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.63  E-value=0.00059  Score=70.35  Aligned_cols=129  Identities=16%  Similarity=0.188  Sum_probs=86.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell  142 (294)
                      ++|+|||.|.||..+|..++ ..|++|+.+|++.......   ....+.... ..+...        .......+++ .+
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~-~~g~~~~~~~~~~~~~i~~~~~~~-~~  412 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNKKV-KRKKITSLERDSILSNLTPTLDYS-GF  412 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence            58999999999999999874 6799999999987542211   111111111 111110        1122345665 46


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  208 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~  208 (294)
                      ++||+|+=++|.+-+.+.-+-++.-+.++++++|...  -+-++..+|.+.+.. .-+..++.-|.
T Consensus       413 ~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~-p~r~ig~Hff~  475 (737)
T TIGR02441       413 KNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASN--TSALPIKDIAAVSSR-PEKVIGMHYFS  475 (737)
T ss_pred             ccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCC-ccceEEEeccC
Confidence            8999999999988888877777777889999988632  344667777777754 33566666664

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.62  E-value=0.00032  Score=63.82  Aligned_cols=80  Identities=15%  Similarity=0.172  Sum_probs=64.8

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+ .+|+.+|.+| ..-++.|+.+..+                            ..++++..++||
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL-~~~~AtVtichs~----------------------------T~nl~~~~~~AD  202 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMML-LERHATVTIAHSR----------------------------TADLAGEVGRAD  202 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence            457999999999995 5899999998 5678999887532                            136889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.+++    -.+++..++   .|+|+++||++--.
T Consensus       203 IvI~AvG----k~~~i~~~~---ik~gaiVIDvGin~  232 (282)
T PRK14182        203 ILVAAIG----KAELVKGAW---VKEGAVVIDVGMNR  232 (282)
T ss_pred             EEEEecC----CcCccCHHH---cCCCCEEEEeecee
Confidence            9999997    256787776   47999999997544

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.62  E-value=0.00027  Score=65.85  Aligned_cols=80  Identities=16%  Similarity=0.330  Sum_probs=64.7

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||=+ .+|+.+|.+| ..-++.|..+..+                            ..++++..++||
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL-~~~~ATVTicHs~----------------------------T~nl~~~~~~AD  259 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLL-QRHDATVSTVHAF----------------------------TKDPEQITRKAD  259 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHH-HHCCCEEEEEcCC----------------------------CCCHHHHHhhCC
Confidence            468999999999996 5799999987 5778999877532                            136889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.++.    -.+++..++   +|+|+++||+|--.
T Consensus       260 IvIsAvG----kp~~v~~d~---vk~GavVIDVGin~  289 (345)
T PLN02897        260 IVIAAAG----IPNLVRGSW---LKPGAVVIDVGTTP  289 (345)
T ss_pred             EEEEccC----CcCccCHHH---cCCCCEEEEccccc
Confidence            9999998    355677766   57999999998543

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.60  E-value=0.00049  Score=62.07  Aligned_cols=127  Identities=19%  Similarity=0.114  Sum_probs=70.0

Q ss_pred             HHHHHh-hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHH
Q 022672           88 YARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  166 (294)
Q Consensus        88 vA~~L~-~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~  166 (294)
                      +|+.|. +++..+|++||+++.......         ..+..   .....+ .+.++++|+|++|+|. ..+..++ ++.
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~---------~~g~~---~~~~~~-~~~~~~~DlvvlavP~-~~~~~~l-~~~   65 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAAL---------ELGII---DEASTD-IEAVEDADLVVLAVPV-SAIEDVL-EEI   65 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHH---------HTTSS---SEEESH-HHHGGCCSEEEE-S-H-HHHHHHH-HHH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHH---------HCCCe---eeccCC-HhHhcCCCEEEEcCCH-HHHHHHH-HHh
Confidence            355552 245689999999876532221         11211   122233 5778999999999993 3444444 566


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe-eCCCCCCC-C---CCCccCCCCeEEccCCC
Q 022672          167 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL-DVFEDEPY-M---KPGLSEMKNAIVVPHIA  230 (294)
Q Consensus       167 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~l-DV~~~EP~-~---~~~L~~~~nviiTPHia  230 (294)
                      ...+++|+++++++.-+.--.+++.+.+.. .....+. =-|.+|-- +   ...|+.-.++++||+-.
T Consensus        66 ~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~-~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   66 APYLKPGAIVTDVGSVKAPIVEAMERLLPE-GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             HCGS-TTSEEEE--S-CHHHHHHHHHHHTS-SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             hhhcCCCcEEEEeCCCCHHHHHHHHHhcCc-ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            677999999999987665445555555552 2222221 12233211 1   23578888999999865

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.59  E-value=0.00033  Score=64.25  Aligned_cols=81  Identities=16%  Similarity=0.226  Sum_probs=63.7

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhc---CCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  143 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~---~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  143 (294)
                      +.++.||++.|||-+ .+|+.+|.+|.+.   .+++|..+....                            .++++.++
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t----------------------------~~l~~~~~  205 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT----------------------------KDIPSYTR  205 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc----------------------------hhHHHHHH
Confidence            468999999999995 5799999987432   477877664321                            36889999


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +||+|+.+++-    .++|..+++   |+|+++||+|-..
T Consensus       206 ~ADIvI~Avg~----~~li~~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        206 QADILIAAIGK----ARFITADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             hCCEEEEecCc----cCccCHHHc---CCCCEEEEeeccc
Confidence            99999999962    277888887   8999999997543

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.59  E-value=0.00051  Score=64.11  Aligned_cols=96  Identities=11%  Similarity=0.098  Sum_probs=66.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ..++++|||.|.+|+..++.|+...+. +|.+|+++..+. +.+...+    ...  ....+....++++.+++||+|+.
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a-~~~a~~~----~~~--~g~~v~~~~~~~~av~~aDiVvt  200 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKA-EALALQL----SSL--LGIDVTAATDPRAAMSGADIIVT  200 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHH-HHHHHHH----Hhh--cCceEEEeCCHHHHhccCCEEEE
Confidence            357899999999999999987435674 689999987542 3333222    111  01223345789999999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +.|.   ..-++..+.   +|+|+.+..++
T Consensus       201 aT~s---~~p~i~~~~---l~~g~~i~~vg  224 (326)
T TIGR02992       201 TTPS---ETPILHAEW---LEPGQHVTAMG  224 (326)
T ss_pred             ecCC---CCcEecHHH---cCCCcEEEeeC
Confidence            9874   345666554   68998887775

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.58  E-value=0.00026  Score=64.06  Aligned_cols=114  Identities=19%  Similarity=0.264  Sum_probs=81.9

Q ss_pred             CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.+|+||++.|||-++ +|+.++..| ...++.|.++..+.                            .++.+..++||
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL-~~~naTVtvcHs~T----------------------------~~l~~~~k~AD  201 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLL-LNANATVTVCHSRT----------------------------KDLASITKNAD  201 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHH-HhCCCEEEEEcCCC----------------------------CCHHHHhhhCC
Confidence            4579999999999986 599999998 57899999876432                            36888999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVV  226 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiT  226 (294)
                      +|+.++-    -.+++..++   .|+|+++|+++--.+-+          +++   .=||--.+       +....-.+|
T Consensus       202 Ivv~AvG----~p~~i~~d~---vk~gavVIDVGinrv~~----------~kl---~GDVdf~~-------v~~~a~~iT  254 (283)
T COG0190         202 IVVVAVG----KPHFIKADM---VKPGAVVIDVGINRVND----------GKL---VGDVDFDS-------VKEKASAIT  254 (283)
T ss_pred             EEEEecC----Ccccccccc---ccCCCEEEecCCccccC----------Cce---EeeccHHH-------HHHhhcccC
Confidence            9999986    256666544   58999999997544322          344   33553222       223344688


Q ss_pred             cCCCCCcHHHH
Q 022672          227 PHIASASKWTR  237 (294)
Q Consensus       227 PHia~~t~~~~  237 (294)
                      |=-||.-.-+.
T Consensus       255 PVPGGVGPmTv  265 (283)
T COG0190         255 PVPGGVGPMTV  265 (283)
T ss_pred             CCCCccCHHHH
Confidence            88888765443

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.58  E-value=0.00045  Score=63.95  Aligned_cols=121  Identities=16%  Similarity=0.154  Sum_probs=73.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhh-cCCCCc-cccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPV-TWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ++|+|||.|.||..+|.+| ...|.+|..+.+......   .. .+..+.. .+.... ......+.+ .+..+|+|++|
T Consensus         6 m~I~IiG~GaiG~~lA~~L-~~~g~~V~~~~r~~~~~~---~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila   79 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAML-ARAGFDVHFLLRSDYEAV---RE-NGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG   79 (313)
T ss_pred             cEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCHHHH---Hh-CCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence            5899999999999999998 567899998887643211   11 1111100 010000 011112333 46789999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEE
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  203 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~  203 (294)
                      ++. .++...+ +.....+++++.++...-| +-.++.|.+.+-..++.++.
T Consensus        80 vK~-~~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~  128 (313)
T PRK06249         80 LKT-TANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL  128 (313)
T ss_pred             ecC-CChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence            994 3344332 3444556788888887665 44566777777666665553

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.57  E-value=0.00056  Score=63.19  Aligned_cols=96  Identities=15%  Similarity=0.181  Sum_probs=67.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      -+++||||.|..|+.-++.+..-+.. +|.+|+++.... +.|.+..    ....  +.......+.++.+++||+|+.+
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~f~~~~----~~~~--~~~v~~~~~~~eav~~aDIV~ta  189 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHA-RAFAERF----SKEF--GVDIRPVDNAEAALRDADTITSI  189 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHH----HHhc--CCcEEEeCCHHHHHhcCCEEEEe
Confidence            47899999999999988877555665 689999987643 3333322    1111  22234457899999999999998


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|   .+.-++..+.   +|||+.+.-++.
T Consensus       190 T~---s~~P~~~~~~---l~pg~hV~aiGs  213 (301)
T PRK06407        190 TN---SDTPIFNRKY---LGDEYHVNLAGS  213 (301)
T ss_pred             cC---CCCcEecHHH---cCCCceEEecCC
Confidence            87   3457776664   578877776653

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.56  E-value=0.00046  Score=63.17  Aligned_cols=81  Identities=15%  Similarity=0.208  Sum_probs=63.3

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhc---CCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  143 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~---~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  143 (294)
                      +.++.||++.|||-+ .+|+.+|.+|...   +++.|+.+...                            ..++.+..+
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~----------------------------T~nl~~~~~  203 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR----------------------------SKNLKKECL  203 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC----------------------------CCCHHHHHh
Confidence            457999999999995 5899999988422   27888877432                            136889999


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +||+|+.+++    ..+++..++   .|+|+++||++--.
T Consensus       204 ~ADIvIsAvG----kp~~i~~~~---vk~gavVIDvGin~  236 (293)
T PRK14185        204 EADIIIAALG----QPEFVKADM---VKEGAVVIDVGTTR  236 (293)
T ss_pred             hCCEEEEccC----CcCccCHHH---cCCCCEEEEecCcc
Confidence            9999999998    245677665   58999999997543

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.56  E-value=0.001  Score=58.95  Aligned_cols=117  Identities=22%  Similarity=0.322  Sum_probs=70.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCC---------chhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM  138 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  138 (294)
                      .++.|++|.|.|+|.+|+.+|+.| ..+|++|++. |..         ......+.....+...    ..+ .... .+.
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~----~~~-~~~~-~~~   99 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVL----GFP-GAER-ITN   99 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcc----cCC-Ccee-cCC
Confidence            368999999999999999999998 6899999954 441         1111111111111000    000 0001 122


Q ss_pred             HHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          139 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       139 ~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ++++ .+||+++-|.+     .+.++.+....++ =.+++-.+-+.+-  ..-.+.|+++.+.
T Consensus       100 ~~i~~~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~  154 (227)
T cd01076         100 EELLELDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL  154 (227)
T ss_pred             ccceeecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence            2322 47899988875     5567788777776 3456666777763  5555777777654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.54  E-value=0.00056  Score=62.79  Aligned_cols=81  Identities=16%  Similarity=0.256  Sum_probs=63.3

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcC---CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  143 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~---g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  143 (294)
                      +.++.||++.|||-+ .+|+.+|.+|.+.+   ++.|..+...                            ..++++..+
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~----------------------------T~~l~~~~~  203 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR----------------------------TDDLAAKTR  203 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC----------------------------CCCHHHHHh
Confidence            457999999999995 57999999884333   7888876432                            136889999


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +||+|+.++.    -.+++..++   +|+|+++||++--.
T Consensus       204 ~ADIvIsAvG----kp~~i~~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        204 RADIVVAAAG----VPELIDGSM---LSEGATVIDVGINR  236 (297)
T ss_pred             hCCEEEEccC----CcCccCHHH---cCCCCEEEEccccc
Confidence            9999999986    245777765   57999999998544

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.54  E-value=0.0004  Score=60.38  Aligned_cols=107  Identities=16%  Similarity=0.246  Sum_probs=69.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCC---chhHHHH-H---------HhhhhhhhhhcCCCCcccc-
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEK-F---------VTAYGQFLKANGEQPVTWK-  133 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~---~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~-  133 (294)
                      ..|..++|+|+|+|.+|..+|+.|+ ..|+ +++.+|+.   .+..... +         .+...+.+.... ....+. 
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~in-p~~~i~~   94 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEIN-PYTEIEA   94 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHC-CCCEEEE
Confidence            3588899999999999999999985 6788 68889876   2110000 0         000011111111 111111 


Q ss_pred             -----ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEE
Q 022672          134 -----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN  178 (294)
Q Consensus       134 -----~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN  178 (294)
                           ...+++++++++|+|+-| ..+.+++.++.......+++..++..
T Consensus        95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~  143 (200)
T TIGR02354        95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA  143 (200)
T ss_pred             eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                 123466788999999999 56888999998888888887666664

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.53  E-value=0.00069  Score=63.16  Aligned_cols=96  Identities=18%  Similarity=0.245  Sum_probs=69.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      -++++|||.|..++.-.+.+..-++. +|.+|++++... +++..    .+...+..  ......+.+++++.||+|+.+
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a~----~l~~~~~~--~v~a~~s~~~av~~aDiIvt~  202 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFAA----RLRKRGGE--AVGAADSAEEAVEGADIVVTA  202 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHHH----HHHhhcCc--cceeccCHHHHhhcCCEEEEe
Confidence            35899999999999999987666776 688999987653 22222    12222221  234567999999999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|.++   -++..+.   +|||+.+..++-
T Consensus       203 T~s~~---Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         203 TPSTE---PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             cCCCC---CeecHhh---cCCCcEEEecCC
Confidence            98543   6676665   569999999873

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.53  E-value=0.00057  Score=61.60  Aligned_cols=104  Identities=13%  Similarity=0.145  Sum_probs=65.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhhc--CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEG--FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~--~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~  149 (294)
                      ++|||||+|.||+.+++.|..+  .++++. ++++.... .+.+..            .  .....+++++ ..+.|+|+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~-~~~~~~------------~--~~~~~~l~~ll~~~~DlVV   67 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL-PPALAG------------R--VALLDGLPGLLAWRPDLVV   67 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH-HHHhhc------------c--CcccCCHHHHhhcCCCEEE
Confidence            5899999999999999987433  236654 45655422 221110            0  2345789997 58899999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHcC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---EVALVEHLKQN  197 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd---~~aL~~aL~~g  197 (294)
                      =|.+  ++..   -+-..+-++.|.-++=.|-|.+-|   ++.|.++.+++
T Consensus        68 E~A~--~~av---~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~  113 (267)
T PRK13301         68 EAAG--QQAI---AEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAG  113 (267)
T ss_pred             ECCC--HHHH---HHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence            9987  2222   122334456677777788888887   44555555553

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.52  E-value=0.0008  Score=62.89  Aligned_cols=95  Identities=15%  Similarity=0.140  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ..++++|||.|.+|+..+..++...+ -+|.+|+++..+ .+.+.+.+    ...  ....+....++++++.+||+|+.
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~~~~----~~~--~g~~v~~~~d~~~al~~aDiVi~  203 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYAADL----RAE--LGIPVTVARDVHEAVAGADIIVT  203 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHH----hhc--cCceEEEeCCHHHHHccCCEEEE
Confidence            35789999999999998887643355 478999988654 33333221    111  01222345789999999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      +.|.   ...++..+.   +++|+.+..+
T Consensus       204 aT~s---~~p~i~~~~---l~~g~~v~~v  226 (330)
T PRK08291        204 TTPS---EEPILKAEW---LHPGLHVTAM  226 (330)
T ss_pred             eeCC---CCcEecHHH---cCCCceEEee
Confidence            9874   345665544   5788766654

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.52  E-value=0.00048  Score=63.18  Aligned_cols=80  Identities=19%  Similarity=0.260  Sum_probs=63.3

Q ss_pred             CcccCCCEEEEEcCC-hHHHHHHHHHhhcC----CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 022672           68 GNLLKGQTVGVIGAG-RIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  142 (294)
Q Consensus        68 g~~l~gktvGIIGlG-~IG~~vA~~L~~~~----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  142 (294)
                      +.++.||++.|||-+ .+|+.+|.+|. .-    ++.|+.+...                            ..++++..
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~-~~~~~~~atVtv~hs~----------------------------T~~l~~~~  206 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMT-QKGPGANATVTIVHTR----------------------------SKNLARHC  206 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHH-hcccCCCCEEEEecCC----------------------------CcCHHHHH
Confidence            568999999999995 68999999884 43    7888876432                            13688999


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      ++||+|+.++.    -.+++..++   +|+|+++||++.-.
T Consensus       207 ~~ADIvVsAvG----kp~~i~~~~---ik~gavVIDvGin~  240 (297)
T PRK14168        207 QRADILIVAAG----VPNLVKPEW---IKPGATVIDVGVNR  240 (297)
T ss_pred             hhCCEEEEecC----CcCccCHHH---cCCCCEEEecCCCc
Confidence            99999999986    245677766   57999999998644

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.52  E-value=0.00081  Score=69.15  Aligned_cols=128  Identities=18%  Similarity=0.188  Sum_probs=83.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell  142 (294)
                      ++|+|||.|.||..+|..++ ..|++|+.+|++.......   ....+...+. .+...        .......+++ .+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~~-~~  390 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVE-RGRITPAKMAGVLNGITPTLSYA-GF  390 (714)
T ss_pred             ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCChhhHHHHHhCeEEeCCHH-Hh
Confidence            57999999999999999875 6799999999987543211   1111111111 11100        0122334564 46


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  207 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~  207 (294)
                      ++||+|+=++|..-+.+.-+-++.-+.++|+++|...  -+-++..+|.+.++. .-+..++=-|
T Consensus       391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasn--TS~l~i~~ia~~~~~-p~r~ig~Hff  452 (714)
T TIGR02437       391 DNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASN--TSTISISLLAKALKR-PENFCGMHFF  452 (714)
T ss_pred             cCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHhhcCC-cccEEEEecC
Confidence            9999999999988887777777777889999988644  334566677777643 3334454444

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.52  E-value=0.00067  Score=63.82  Aligned_cols=96  Identities=17%  Similarity=0.223  Sum_probs=66.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      -++++|||.|..++.-++.+..-+.. +|.+|++++... +.+.+..    ..   ....+....++++.+++||+|+.+
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a-~~~~~~~----~~---~~~~v~~~~~~~~av~~ADIIvta  200 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAAT-AKLARNL----AG---PGLRIVACRSVAEAVEGADIITTV  200 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHH-HHHHHHH----Hh---cCCcEEEeCCHHHHHhcCCEEEEe
Confidence            46899999999999988876555665 689999987643 3333222    11   122334467899999999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .|. .+..-++..+   .+|||+.+.-++
T Consensus       201 T~S-~~~~Pvl~~~---~lkpG~hV~aIG  225 (346)
T PRK07589        201 TAD-KTNATILTDD---MVEPGMHINAVG  225 (346)
T ss_pred             cCC-CCCCceecHH---HcCCCcEEEecC
Confidence            873 2222456554   458999877765

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.50  E-value=0.00023  Score=56.62  Aligned_cols=96  Identities=17%  Similarity=0.283  Sum_probs=53.2

Q ss_pred             EEEEEc-CChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           75 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        75 tvGIIG-lG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      +|+||| .|.+|+.+.++|.+...+++.. ++++.... ..+...+.   ...+........ .+. +.+.++|+|++|+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g-~~~~~~~~---~~~~~~~~~~~~-~~~-~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAG-KPLSEVFP---HPKGFEDLSVED-ADP-EELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTT-SBHHHTTG---GGTTTEEEBEEE-TSG-HHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccC-Ceeehhcc---ccccccceeEee-cch-hHhhcCCEEEecC
Confidence            699999 9999999999997777888654 44433111 11111110   000001111111 233 4459999999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |.. .+..+ ....   ++.|..+|+.+.
T Consensus        75 ~~~-~~~~~-~~~~---~~~g~~ViD~s~   98 (121)
T PF01118_consen   75 PHG-ASKEL-APKL---LKAGIKVIDLSG   98 (121)
T ss_dssp             CHH-HHHHH-HHHH---HHTTSEEEESSS
T ss_pred             chh-HHHHH-HHHH---hhCCcEEEeCCH
Confidence            832 22222 1222   478889999864

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.50  E-value=0.00099  Score=63.48  Aligned_cols=101  Identities=20%  Similarity=0.287  Sum_probs=68.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCC-C-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFK-M-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g-~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      -++++|||.|..++.-++.++.-+. . +|.+|+++..+. +.|.+.+    .........+..+.+.++++++||+|+.
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a-~~f~~~~----~~~~~~~~~v~~~~s~~eav~~ADIVvt  229 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSL-DSFATWV----AETYPQITNVEVVDSIEEVVRGSDIVTY  229 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHhcCCCceEEEeCCHHHHHcCCCEEEE
Confidence            4789999999999999988754453 4 799999987543 3333322    1111000113346789999999999999


Q ss_pred             ccCCCc---cccccccHHHHhcCCCCcEEEEcCC
Q 022672          151 HPVLDK---TTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       151 ~~Plt~---~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |.+.+.   .+.-++..+.   +|||+.++.++.
T Consensus       230 aT~s~~~~~s~~Pv~~~~~---lkpG~hv~~ig~  260 (379)
T PRK06199        230 CNSGETGDPSTYPYVKREW---VKPGAFLLMPAA  260 (379)
T ss_pred             ccCCCCCCCCcCcEecHHH---cCCCcEEecCCc
Confidence            987433   3446776654   579998877655

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.49  E-value=0.0004  Score=60.77  Aligned_cols=98  Identities=21%  Similarity=0.300  Sum_probs=62.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhc-CCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~-~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+|||||+|.||+.+.+.+..+ .+++ +.+||+...+..+..             ...+.....+++|++++.|+++=|
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~-------------~~~~~~~~s~ide~~~~~DlvVEa   67 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELE-------------ASVGRRCVSDIDELIAEVDLVVEA   67 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHH-------------hhcCCCccccHHHHhhccceeeee
Confidence            3799999999999999986322 3455 677998876532210             011112237899999999999988


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA  189 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~a  189 (294)
                      ..  ++...   .-..+.|+.|.=+|=+|-|.+.|+.=
T Consensus        68 AS--~~Av~---e~~~~~L~~g~d~iV~SVGALad~~l  100 (255)
T COG1712          68 AS--PEAVR---EYVPKILKAGIDVIVMSVGALADEGL  100 (255)
T ss_pred             CC--HHHHH---HHhHHHHhcCCCEEEEechhccChHH
Confidence            76  33222   22334456665566677788886543

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.47  E-value=0.00051  Score=63.81  Aligned_cols=87  Identities=17%  Similarity=0.182  Sum_probs=58.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .+|||||+|+||+.+++.+.+.-++++.+ +|++.......               ..+.....+.++++.+.|+|++|.
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~---------------~~~v~~~~d~~e~l~~iDVViIct   68 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT---------------ETPVYAVADDEKHLDDVDVLILCM   68 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh---------------cCCccccCCHHHhccCCCEEEEcC
Confidence            58999999999999999874444899876 68774222110               112223356777889999999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      |..  ++   -......|+.|.-+|+..
T Consensus        69 Ps~--th---~~~~~~~L~aG~NVV~s~   91 (324)
T TIGR01921        69 GSA--TD---IPEQAPYFAQFANTVDSF   91 (324)
T ss_pred             CCc--cC---HHHHHHHHHcCCCEEECC
Confidence            843  23   144445567777788774

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK06046 alanine dehydrogenase; Validated

Probab=97.47  E-value=0.0011  Score=61.99  Aligned_cols=95  Identities=20%  Similarity=0.289  Sum_probs=64.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      -+++||||.|.+|+..++.++...+. +|.+||++.... +.+.+.+.    ..  .+.......+++++++ +|+|++|
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~-~~~~~~~~----~~--~~~~v~~~~~~~~~l~-aDiVv~a  200 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSA-EKFVERMS----SV--VGCDVTVAEDIEEACD-CDILVTT  200 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHH-HHHHHHHH----hh--cCceEEEeCCHHHHhh-CCEEEEe
Confidence            46899999999999999887544566 467799886542 33332221    10  1122233568999997 9999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|.   +.-++..+.   +|+|+.+..++-
T Consensus       201 Tps---~~P~~~~~~---l~~g~hV~~iGs  224 (326)
T PRK06046        201 TPS---RKPVVKAEW---IKEGTHINAIGA  224 (326)
T ss_pred             cCC---CCcEecHHH---cCCCCEEEecCC
Confidence            984   346666654   589999888873

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.45  E-value=0.00051  Score=59.93  Aligned_cols=93  Identities=19%  Similarity=0.261  Sum_probs=61.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV  148 (294)
                      ++.|++|.|||.|.+|..-++.| ..+|++|+++++........+.+        .+  .+.+.. ... .+.+..+|+|
T Consensus         6 ~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~--------~~--~i~~~~~~~~-~~dl~~~~lV   73 (205)
T TIGR01470         6 NLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLAE--------QG--GITWLARCFD-ADILEGAFLV   73 (205)
T ss_pred             EcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHH--------cC--CEEEEeCCCC-HHHhCCcEEE
Confidence            68999999999999999999987 58999999999876544333211        11  111111 112 3456788888


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      +.+... ++    +|.......+...++||+
T Consensus        74 i~at~d-~~----ln~~i~~~a~~~~ilvn~   99 (205)
T TIGR01470        74 IAATDD-EE----LNRRVAHAARARGVPVNV   99 (205)
T ss_pred             EECCCC-HH----HHHHHHHHHHHcCCEEEE
Confidence            877652 22    345555555555677775

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.44  E-value=0.003  Score=58.32  Aligned_cols=130  Identities=24%  Similarity=0.298  Sum_probs=82.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCCCc--------cccccCCHHHH
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQPV--------TWKRASSMDEV  141 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~l~el  141 (294)
                      -++|||||.|.||+.+|..++ ..|.+|..+|++.......   ........... +....        ......++. .
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A-~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~-g~l~~~~~~~~l~~i~~~~~~~-~   79 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFA-LAGYDVVLKDISPEALERALAYIEKNLEKLVEK-GKLTEEEADAALARITPTTDLA-A   79 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHh-hcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhc-CCCChhhHHHHHhhccccCchh-H
Confidence            378999999999999999875 4679999999985432111   11111111111 11110        011223343 6


Q ss_pred             hhcCCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeCCCC
Q 022672          142 LREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  209 (294)
Q Consensus       142 l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~  209 (294)
                      +++||+|+=++|-+-+.++-+-++.-+..+|+++|- |||+   +.-.+|.++++. .=+..++=-|.+
T Consensus        80 l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~r-per~iG~HFfNP  144 (307)
T COG1250          80 LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALKR-PERFIGLHFFNP  144 (307)
T ss_pred             hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhCC-chhEEEEeccCC
Confidence            789999999999888877777777778889999885 4433   556677777743 335566655543

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.43  E-value=0.0016  Score=59.72  Aligned_cols=78  Identities=18%  Similarity=0.152  Sum_probs=53.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.++++.|||.|.+|++++..| ...|+ +|+.+|++..+. +.+.+.+..    .. .........++.+.++++|+|
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~ka-~~la~~l~~----~~-~~~~~~~~~~~~~~~~~aDiV  196 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPARA-AALADELNA----RF-PAARATAGSDLAAALAAADGL  196 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHHHHh----hC-CCeEEEeccchHhhhCCCCEE
Confidence            57889999999999999999997 47887 799999986543 222222111    00 011112234566678899999


Q ss_pred             EEccCC
Q 022672          149 SLHPVL  154 (294)
Q Consensus       149 ~l~~Pl  154 (294)
                      +.+.|.
T Consensus       197 InaTp~  202 (284)
T PRK12549        197 VHATPT  202 (284)
T ss_pred             EECCcC
Confidence            999984

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.42  E-value=0.00095  Score=62.14  Aligned_cols=131  Identities=16%  Similarity=0.255  Sum_probs=72.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      +..++|+|||.|.+|..+|..++ ..| .++..+|...........+.. . ...............+++ .+++||+|+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl~-~-~~~~~~~~~~i~~~~d~~-~l~~ADiVV   78 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDLK-H-FSTLVGSNINILGTNNYE-DIKDSDVVV   78 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHHh-h-hccccCCCeEEEeCCCHH-HhCCCCEEE
Confidence            45679999999999999998764 445 689999987643211111110 0 000011111222235666 679999999


Q ss_pred             Ecc--CCCcc-cc--------cccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCcceEE--ee
Q 022672          150 LHP--VLDKT-TY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG--LD  205 (294)
Q Consensus       150 l~~--Plt~~-t~--------~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~--~g~i~ga~--lD  205 (294)
                      ++.  |..+. ++        .++-  .+.+....|.+++|+++-..-+-...+.+...  ..++.|.+  ||
T Consensus        79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence            998  43321 11        1110  12333446788899986544333333433321  34566555  55

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.42  E-value=0.0007  Score=63.28  Aligned_cols=92  Identities=16%  Similarity=0.109  Sum_probs=59.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.|+++.|||.|.||+.+|+.| ...|+ ++++.+|+....  .    +            +.. ....-++..++|+|
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~~~--~----~------------~~~-~~~~~~~~~~~DvV  230 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQLTL--P----Y------------RTV-VREELSFQDPYDVI  230 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCcccc--c----h------------hhh-hhhhhhcccCCCEE
Confidence            58999999999999999999998 56774 688888875320  0    0            000 00111445789999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      +.|..-|.....++..+.++..++ -+|||.+=.
T Consensus       231 Is~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvP  263 (338)
T PRK00676        231 FFGSSESAYAFPHLSWESLADIPD-RIVFDFNVP  263 (338)
T ss_pred             EEcCCcCCCCCceeeHHHHhhccC-cEEEEecCC
Confidence            997433444455666666654332 377777543

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.41  E-value=0.00087  Score=64.10  Aligned_cols=99  Identities=21%  Similarity=0.245  Sum_probs=67.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      +|.++++.|||+|.||.-+|+.| ...| .+|+..+|+..... .+...+       +   .......++.+.+.++|+|
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~erA~-~La~~~-------~---~~~~~l~el~~~l~~~DvV  242 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLERAE-ELAKKL-------G---AEAVALEELLEALAEADVV  242 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHHHH-HHHHHh-------C---CeeecHHHHHHhhhhCCEE
Confidence            48999999999999999999998 4777 47888888875432 222211       1   1223446777889999999


Q ss_pred             EEccCCCccccccccHHHHhcC---CCCcEEEEcCCCc
Q 022672          149 SLHPVLDKTTYHLINKERLATM---KKEAILVNCSRGP  183 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~m---k~gailIN~aRG~  183 (294)
                      +.+..   ....++..+.+...   ++.-++||.+=..
T Consensus       243 issTs---a~~~ii~~~~ve~a~~~r~~~livDiavPR  277 (414)
T COG0373         243 ISSTS---APHPIITREMVERALKIRKRLLIVDIAVPR  277 (414)
T ss_pred             EEecC---CCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence            99964   45666766655332   1124778776443

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.38  E-value=0.0012  Score=61.02  Aligned_cols=127  Identities=16%  Similarity=0.204  Sum_probs=72.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.+|..+|..++ ..|. +|+.+|...........+.+.....  ...........++++ +++||+|+++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~--~~~~~~i~~t~d~~~-~~~aDiVIita   77 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEASPV--GGFDTKVTGTNNYAD-TANSDIVVITA   77 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhhhc--cCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence            47999999999999999874 4443 8999998654322111111110000  000112223467777 78999999999


Q ss_pred             CCCcccccc-------ccH-------HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceEE--ee
Q 022672          153 VLDKTTYHL-------INK-------ERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD  205 (294)
Q Consensus       153 Plt~~t~~l-------i~~-------~~l~~mk~gailIN~aRG~~vd~~aL~~a--L~~g~i~ga~--lD  205 (294)
                      + ++...+.       .|.       +.+....|++++|+++-.-=+-...+.+.  +...++.|.+  ||
T Consensus        78 g-~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        78 G-LPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             C-CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            8 3332221       111       22333457889999876443334444444  4444566665  66

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.35  E-value=0.0025  Score=56.09  Aligned_cols=115  Identities=18%  Similarity=0.250  Sum_probs=68.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCch---------hHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQA---------TRLEKFVTAYGQFLKANGEQPVTWKRASSM  138 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  138 (294)
                      .++.|++|.|.|+|++|+.+|+.| ...|.++++ .|.+..         ...+...+.       .+..........+-
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~-------~~~~~~~~~~~~~~   90 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDGYIYDPGITTEELINYAVAL-------GGSARVKVQDYFPG   90 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhh-------CCccccCcccccCc
Confidence            368999999999999999999998 578886655 565430         111111110       00000000000111


Q ss_pred             HHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 022672          139 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       139 ~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i  199 (294)
                      ++++ .+||+++-|.+     .+.++.+....++ =.+++-.+.+++-+  .-.+.|++..+
T Consensus        91 ~~l~~~~~DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi  144 (217)
T cd05211          91 EAILGLDVDIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGI  144 (217)
T ss_pred             ccceeccccEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCc
Confidence            2222 48999999987     4478888887776 34666677777765  34556666544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PLN02477 glutamate dehydrogenase

Probab=97.34  E-value=0.0077  Score=57.88  Aligned_cols=117  Identities=27%  Similarity=0.362  Sum_probs=72.8

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCC----------chhHHHHHHhhhhhhhhhcCCCCccccccC
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRAS  136 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (294)
                      |.++.|+||.|.|+|++|+.+|+.| ...|++|++ .|.+          ... ..+.....+. +.  . .+ +.... 
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iy~~~GLD~~~-L~~~k~~~g~-l~--~-~~-~a~~i-  272 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDITGAVKNENGLDIPA-LRKHVAEGGG-LK--G-FP-GGDPI-  272 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECCCCeEECCCCCCHHH-HHHHHHhcCc-hh--c-cc-cceEe-
Confidence            4579999999999999999999997 689999984 4544          111 1011110000 00  0 00 01111 


Q ss_pred             CHHHH-hhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          137 SMDEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       137 ~l~el-l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +.+++ ..+||+++-|.     ..+.|+++....++ =.+++-.+.+.+ . .+-.+.|++..|.
T Consensus       273 ~~~e~l~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t-~ea~~~L~~rGI~  329 (410)
T PLN02477        273 DPDDILVEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-D-PEADEILRKKGVV  329 (410)
T ss_pred             cCccceeccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-C-HHHHHHHHHCCcE
Confidence            22232 35899988775     46678888888875 447888888888 3 3345777776653

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.33  E-value=0.0002  Score=55.48  Aligned_cols=88  Identities=23%  Similarity=0.217  Sum_probs=57.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .++|++|.|||.|.+|..-++.| ...|++|+++++.. ...+.               ...+. ...+++.+.++|+|+
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~-~~~~~---------------~i~~~-~~~~~~~l~~~~lV~   65 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEI-EFSEG---------------LIQLI-RREFEEDLDGADLVF   65 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSE-HHHHT---------------SCEEE-ESS-GGGCTTESEEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCch-hhhhh---------------HHHHH-hhhHHHHHhhheEEE
Confidence            58999999999999999999997 68999999999875 11111               01111 123456688899999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .+.+. ++    +++......+.-.++||++
T Consensus        66 ~at~d-~~----~n~~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   66 AATDD-PE----LNEAIYADARARGILVNVV   91 (103)
T ss_dssp             E-SS--HH----HHHHHHHHHHHTTSEEEET
T ss_pred             ecCCC-HH----HHHHHHHHHhhCCEEEEEC
Confidence            88762 22    4455555566566788874

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.0051  Score=57.32  Aligned_cols=162  Identities=17%  Similarity=0.227  Sum_probs=115.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hcCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l  150 (294)
                      ..+|+||++-||+.++-.+ ...|+.|.+|+|..++. +++...       . ..........|+++++   +.-..|++
T Consensus         7 ~digLiGLaVMGqnLiLN~-~d~Gf~v~~yNRT~skv-D~flan-------e-ak~~~i~ga~S~ed~v~klk~PR~iil   76 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNI-ADKGFTVCAYNRTTSKV-DEFLAN-------E-AKGTKIIGAYSLEDFVSKLKKPRVIIL   76 (487)
T ss_pred             cchhhhhHhhhhhhhhhcc-cccCceEEEeccchHhH-HHHHHH-------h-hcCCcccCCCCHHHHHHhcCCCcEEEE
Confidence            4699999999999999886 47899999999987654 333221       1 1122234557888875   56778888


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC--CCccCCCCeEEccC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPH  228 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~--~~L~~~~nviiTPH  228 (294)
                      .+-.......+| ++....|.+|-++|+-+...--|+..-.+.|.+..|...+.-|...|--..  +.|  +|       
T Consensus        77 lvkAG~pVD~~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl--Mp-------  146 (487)
T KOG2653|consen   77 LVKAGAPVDQFI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL--MP-------  146 (487)
T ss_pred             EeeCCCcHHHHH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc--CC-------
Confidence            776544444444 677788999999999999999999999999999999999999998886432  223  22       


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 022672          229 IASASKWTREGMATLAALNVLGKIKGYPI  257 (294)
Q Consensus       229 ia~~t~~~~~~~~~~~~~nl~~~~~g~~~  257 (294)
                        |.+.+++.++-..+..-....-.|+|.
T Consensus       147 --Gg~~~Awp~ik~ifq~iaakv~~~epC  173 (487)
T KOG2653|consen  147 --GGSKEAWPHIKDIFQKIAAKVSDGEPC  173 (487)
T ss_pred             --CCChHHHHHHHHHHHHHHHHhcCCCCC
Confidence              445567777666554433333466775

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.33  E-value=0.0012  Score=63.61  Aligned_cols=96  Identities=16%  Similarity=0.267  Sum_probs=63.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.|+++.|||.|.+|+.+++.| ...|+ ++++++|+.... ..+...++       .  .......++.+++.++|+|
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~ra-~~La~~~~-------~--~~~~~~~~l~~~l~~aDiV  246 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEKA-QKITSAFR-------N--ASAHYLSELPQLIKKADII  246 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHHhc-------C--CeEecHHHHHHHhccCCEE
Confidence            57899999999999999999998 46775 789999886432 33322221       0  0112235667889999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +.|.+.   ...+|..+...  .+..++|+.|=
T Consensus       247 I~aT~a---~~~vi~~~~~~--~~~~~~iDLav  274 (414)
T PRK13940        247 IAAVNV---LEYIVTCKYVG--DKPRVFIDISI  274 (414)
T ss_pred             EECcCC---CCeeECHHHhC--CCCeEEEEeCC
Confidence            999873   34556655543  22346666653

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.31  E-value=0.00059  Score=61.63  Aligned_cols=127  Identities=17%  Similarity=0.285  Sum_probs=73.4

Q ss_pred             EEEEcC-ChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           76 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        76 vGIIGl-G~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      |+|||. |.+|..+|..|+ ..|    .++..||...... +........ ..... .........++++.+++||+|++
T Consensus         1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~l-~~~~~dl~~-~~~~~-~~~~i~~~~d~~~~~~~aDiVv~   76 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEKL-KGVAMDLQD-AVEPL-ADIKVSITDDPYEAFKDADVVII   76 (263)
T ss_pred             CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCcccc-hHHHHHHHH-hhhhc-cCcEEEECCchHHHhCCCCEEEE
Confidence            589999 999999999874 445    6899999876432 211111111 11111 12233345677888999999999


Q ss_pred             ccCCCc---ccc--------cccc--HHHHhcCCCCcEEEEcCCCcccCHH--HHHHH--HHcCCcceEE-eeCCC
Q 022672          151 HPVLDK---TTY--------HLIN--KERLATMKKEAILVNCSRGPVIDEV--ALVEH--LKQNPMFRVG-LDVFE  208 (294)
Q Consensus       151 ~~Plt~---~t~--------~li~--~~~l~~mk~gailIN~aRG~~vd~~--aL~~a--L~~g~i~ga~-lDV~~  208 (294)
                      +.-...   .++        .++.  .+.+....|++++||++  ..+|.-  .+.+.  +...++.|.+ +|...
T Consensus        77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~~r  150 (263)
T cd00650          77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDPIR  150 (263)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchHHH
Confidence            652110   011        1110  12233445899999995  444433  34444  3566788888 77543

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.29  E-value=0.0022  Score=58.81  Aligned_cols=80  Identities=15%  Similarity=0.207  Sum_probs=50.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCch--hHHHHHHhhhhhhhhhcCCC-C---ccccccCCHHHHh
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA--TRLEKFVTAYGQFLKANGEQ-P---VTWKRASSMDEVL  142 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~l~ell  142 (294)
                      .+.+|++.|+|.|.+|++++..| ...|++ |+.++|+..  ...+...+.+    ...... .   ..+....++++.+
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~L-a~~G~~~V~I~~R~~~~~~~a~~l~~~l----~~~~~~~~~~~~d~~~~~~~~~~~  197 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQC-ALDGAKEITIFNIKDDFYERAEQTAEKI----KQEVPECIVNVYDLNDTEKLKAEI  197 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCchHHHHHHHHHHHH----hhcCCCceeEEechhhhhHHHhhh
Confidence            46789999999999999999987 478885 999998752  2222222211    111100 0   0111112345566


Q ss_pred             hcCCEEEEccCC
Q 022672          143 READVISLHPVL  154 (294)
Q Consensus       143 ~~aDiV~l~~Pl  154 (294)
                      ..+|+|+.+.|.
T Consensus       198 ~~~DilINaTp~  209 (289)
T PRK12548        198 ASSDILVNATLV  209 (289)
T ss_pred             ccCCEEEEeCCC
Confidence            788999999984

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.26  E-value=0.0015  Score=56.81  Aligned_cols=75  Identities=16%  Similarity=0.234  Sum_probs=50.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      -+|.||+|.|||.|.+|...++.| ...|++|+++++..........+        .+  .+.+....-.++.+..+|+|
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~--------~~--~i~~~~~~~~~~~l~~adlV   74 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVE--------EG--KIRWKQKEFEPSDIVDAFLV   74 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHh--------CC--CEEEEecCCChhhcCCceEE
Confidence            479999999999999999999987 57899999998765443322211        11  11111111123456789988


Q ss_pred             EEccCC
Q 022672          149 SLHPVL  154 (294)
Q Consensus       149 ~l~~Pl  154 (294)
                      +.+...
T Consensus        75 iaaT~d   80 (202)
T PRK06718         75 IAATND   80 (202)
T ss_pred             EEcCCC
Confidence            888763

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.26  E-value=0.0021  Score=63.17  Aligned_cols=75  Identities=21%  Similarity=0.224  Sum_probs=50.6

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      +..+.+++++|+|.|.+|++++..| ...|++|++++++.... +.+.+.+       +..   .....++.+ +.++|+
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~~-~~la~~~-------~~~---~~~~~~~~~-l~~~Di  393 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAHA-EALASRC-------QGK---AFPLESLPE-LHRIDI  393 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHh-------ccc---eechhHhcc-cCCCCE
Confidence            3467899999999999999999998 57899999999875432 2221111       000   011122222 578999


Q ss_pred             EEEccCCC
Q 022672          148 ISLHPVLD  155 (294)
Q Consensus       148 V~l~~Plt  155 (294)
                      |+.|+|..
T Consensus       394 VInatP~g  401 (477)
T PRK09310        394 IINCLPPS  401 (477)
T ss_pred             EEEcCCCC
Confidence            99999954

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.25  E-value=0.0013  Score=61.39  Aligned_cols=92  Identities=20%  Similarity=0.234  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  150 (294)
                      .|++|+|+|+|.+|....+. ++++|++|+++|++.++....  ...       +.... .....+.++++-+.+|+++.
T Consensus       166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K~e~a--~~l-------GAd~~i~~~~~~~~~~~~~~~d~ii~  235 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEKLELA--KKL-------GADHVINSSDSDALEAVKEIADAIID  235 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHHHHHH--HHh-------CCcEEEEcCCchhhHHhHhhCcEEEE
Confidence            48999999999999998887 589999999999987654211  111       11100 00011223333334888888


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      ++|  +.+-    ...++.++++..++-+
T Consensus       236 tv~--~~~~----~~~l~~l~~~G~~v~v  258 (339)
T COG1064         236 TVG--PATL----EPSLKALRRGGTLVLV  258 (339)
T ss_pred             CCC--hhhH----HHHHHHHhcCCEEEEE
Confidence            887  3333    5566777777666655

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.23  E-value=0.003  Score=49.45  Aligned_cols=107  Identities=24%  Similarity=0.329  Sum_probs=62.7

Q ss_pred             EEEEEcCChHHHHHHHHHhhc-CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672           75 TVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  150 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  150 (294)
                      ++||||+|.+|+...+.+... -+.++. ++|+++... +.+...+            +...+.+++++++  +.|+|++
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~-~~~~~~~------------~~~~~~~~~~ll~~~~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERA-EAFAEKY------------GIPVYTDLEELLADEDVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHT------------TSEEESSHHHHHHHTTESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHH-HHHHHHh------------cccchhHHHHHHHhhcCCEEEE
Confidence            699999999999998776433 467765 578876542 2222211            1225678999998  7899999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHcCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~-aRG~~vd~~aL~~aL~~g~  198 (294)
                      +.|.  ..+.-+-...++.=+  .+++.- ---.+-+...|.++.++.+
T Consensus        69 ~tp~--~~h~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~  113 (120)
T PF01408_consen   69 ATPP--SSHAEIAKKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKG  113 (120)
T ss_dssp             ESSG--GGHHHHHHHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred             ecCC--cchHHHHHHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence            9993  333223233333211  445442 1112334444555554433

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.21  E-value=0.0026  Score=61.60  Aligned_cols=122  Identities=11%  Similarity=0.097  Sum_probs=72.0

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCC----------chhHHHHHHhhhhhhhhhcCCCCccccccC
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRAS  136 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (294)
                      +.++.|+||.|.|+|++|+.+|+.| ..+|++|++. |.+          ... +.+..+.....+.... ...+.. ..
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsDs~G~iyn~~GLD~~~-L~~~k~~~~~~l~~~~-~~~~~~-~i  302 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSDSSGYVYDEEGIDLEK-LKEIKEVRRGRISEYA-EEFGAE-YL  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHH-HHHHHHhcCCchhhhh-hhcCCe-ec
Confidence            3579999999999999999999998 6899999987 621          111 1111100000000000 000001 11


Q ss_pred             CHHHHh-hcCCEEEEccCCCccccccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          137 SMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       137 ~l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk--~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +.++++ .+||+++-|..     .+.|+.+....++  .=.+++-.+.+.+  +.+-.+.|.++.|.
T Consensus       303 ~~~~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~  362 (445)
T PRK09414        303 EGGSPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL  362 (445)
T ss_pred             CCccccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE
Confidence            333444 37999998875     6667777666663  2346777888887  33345667666553

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.18  E-value=0.0013  Score=62.51  Aligned_cols=102  Identities=17%  Similarity=0.136  Sum_probs=65.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|.|||.|.||+.+|..|++.-..+|+.-|++..+.. +........+.   ...++......+.+++++.|+|+.++|
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~-~i~~~~~~~v~---~~~vD~~d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCA-RIAELIGGKVE---ALQVDAADVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHH-HHHhhccccce---eEEecccChHHHHHHHhcCCEEEEeCC
Confidence            57999999999999999986433389999999865432 21111100000   011222234568899999999999999


Q ss_pred             CCccccccccHHHH-hcCCCCcEEEEcCCCccc
Q 022672          154 LDKTTYHLINKERL-ATMKKEAILVNCSRGPVI  185 (294)
Q Consensus       154 lt~~t~~li~~~~l-~~mk~gailIN~aRG~~v  185 (294)
                      ..      ++...+ +.++-|.-.++++-...-
T Consensus        78 ~~------~~~~i~ka~i~~gv~yvDts~~~~~  104 (389)
T COG1748          78 PF------VDLTILKACIKTGVDYVDTSYYEEP  104 (389)
T ss_pred             ch------hhHHHHHHHHHhCCCEEEcccCCch
Confidence            42      122333 456778888888765544

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.16  E-value=0.022  Score=51.27  Aligned_cols=122  Identities=14%  Similarity=0.131  Sum_probs=72.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCCc-----hh----HHHHH---HhhhhhhhhhcCCCCc-cccc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQ-----AT----RLEKF---VTAYGQFLKANGEQPV-TWKR  134 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~~-----~~----~~~~~---~~~~~~~~~~~~~~~~-~~~~  134 (294)
                      .++.|+||.|-|+|++|+.+|+.| ...|++|++. |.+.     ..    ....+   .+..+..+... .... +...
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~-~~~~~~a~~  111 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEY-AKKYGTAKY  111 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHH-hhcCCCCEE
Confidence            478999999999999999999998 6899999854 4211     00    00000   00000000000 0000 0111


Q ss_pred             cCCHHHH-hhcCCEEEEccCCCccccccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          135 ASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       135 ~~~l~el-l~~aDiV~l~~Plt~~t~~li~~~~l~~mk--~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      . +-+++ -.+||+++-|.     +.+.|+.+....++  +=.+++-.+-+.+-+  +-.+.|.++.|.
T Consensus       112 ~-~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~  172 (254)
T cd05313         112 F-EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL  172 (254)
T ss_pred             e-CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            1 22333 35799998775     57889998888874  345777788888755  344677776653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.15  E-value=0.0021  Score=58.27  Aligned_cols=109  Identities=18%  Similarity=0.191  Sum_probs=61.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .+|||||+|.||+.+++.+.+.-++++.+ +++.....  .....    .   +   .+.....+++++-.+.|+|+.|.
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~--~~~~~----~---~---~~~~~~~d~~~l~~~~DvVve~t   69 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSID--AVRRA----L---G---EAVRVVSSVDALPQRPDLVVECA   69 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHH--HHhhh----h---c---cCCeeeCCHHHhccCCCEEEECC
Confidence            47999999999999999874333566543 33322211  00000    0   0   01234567888755699999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNPM  199 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~---~aL~~aL~~g~i  199 (294)
                      |..  ...   +-....++.|.-++-.+-|...|.   +.|.++.+++..
T Consensus        70 ~~~--~~~---e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~  114 (265)
T PRK13303         70 GHA--ALK---EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA  114 (265)
T ss_pred             CHH--HHH---HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence            832  221   223334455555555555555443   446666655543

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.14  E-value=0.001  Score=61.14  Aligned_cols=96  Identities=17%  Similarity=0.189  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcccc--ccCCHHHHhhcCCEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDEVLREADVIS  149 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~  149 (294)
                      .|+.+||+|+|.+|.--.+. +++||++|+++|+...++.+.+.        .-+....-..  ..+-.+++...-|.++
T Consensus       181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~kkeea~~--------~LGAd~fv~~~~d~d~~~~~~~~~dg~~  251 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKKKEEAIK--------SLGADVFVDSTEDPDIMKAIMKTTDGGI  251 (360)
T ss_pred             CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchhHHHHHH--------hcCcceeEEecCCHHHHHHHHHhhcCcc
Confidence            79999999999999776666 79999999999988654433221        1111111000  1112344555566666


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      -+++.-  +.+-+ ...+..||++..+|-+
T Consensus       252 ~~v~~~--a~~~~-~~~~~~lk~~Gt~V~v  278 (360)
T KOG0023|consen  252 DTVSNL--AEHAL-EPLLGLLKVNGTLVLV  278 (360)
T ss_pred             eeeeec--cccch-HHHHHHhhcCCEEEEE
Confidence            555522  22222 4556667776666654

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=97.07  E-value=0.0065  Score=50.75  Aligned_cols=105  Identities=17%  Similarity=0.239  Sum_probs=67.8

Q ss_pred             CCCEEEEEcC--ChHHHHHHHHHhhcCCCEEEEEcCCchh--HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           72 KGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        72 ~gktvGIIGl--G~IG~~vA~~L~~~~g~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .|+||++||=  +++.++++..+ ..||+++....|..-.  ....+.+.........+   ..+....++++.++++|+
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~e~l~~aDv   76 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG---GKITITDDIEEALKGADV   76 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT---TEEEEESSHHHHHTT-SE
T ss_pred             CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC---CCeEEEeCHHHhcCCCCE
Confidence            4889999993  89999999986 6899999998876521  11122211111111111   112344799999999999


Q ss_pred             EEEccCC----Ccc-------ccccccHHHHhcCCCCcEEEEcC
Q 022672          148 ISLHPVL----DKT-------TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       148 V~l~~Pl----t~~-------t~~li~~~~l~~mk~gailIN~a  180 (294)
                      |..-.--    .+.       ....++++.++.+|++++|..+.
T Consensus        77 vy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   77 VYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             EEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             EEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            9665442    100       11457899999999999999984

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.05  E-value=0.0018  Score=51.38  Aligned_cols=97  Identities=12%  Similarity=0.138  Sum_probs=53.0

Q ss_pred             EEEEEcC-ChHHHHHHHHHhhcCCCEEEEE-cCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           75 TVGVIGA-GRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        75 tvGIIGl-G~IG~~vA~~L~~~~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++||+|. |.+|+.+++.|...-++++.+. ++..... ......+.    .............+++  ..++|+|++|+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~DvV~~~~   73 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAG-KRVSEAGP----HLKGEVVLELEPEDFE--ELAVDIVFLAL   73 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcC-cCHHHHCc----ccccccccccccCChh--hcCCCEEEEcC
Confidence            4899995 9999999998743347777665 4322111 11000000    0000000000112232  25899999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      |.. .+...+. .....+++|.++|+++
T Consensus        74 ~~~-~~~~~~~-~~~~~~~~g~~viD~s   99 (122)
T smart00859       74 PHG-VSKEIAP-LLPKAAEAGVKVIDLS   99 (122)
T ss_pred             CcH-HHHHHHH-HHHhhhcCCCEEEECC
Confidence            943 3333322 3345679999999996

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.03  E-value=0.0037  Score=49.97  Aligned_cols=110  Identities=26%  Similarity=0.411  Sum_probs=60.3

Q ss_pred             EEEEEcC-ChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           75 TVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        75 tvGIIGl-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      +|+|+|+ |+||+.+++.+...-++++. ++|+..+....+   ..+.   -.+..+.+.....++++++.++|+++-..
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---d~g~---~~~~~~~~~~v~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---DVGE---LAGIGPLGVPVTDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---BCHH---HCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---hhhh---hhCcCCcccccchhHHHhcccCCEEEEcC
Confidence            7999999 99999999997545789865 467665221100   0000   01122344455689999999999987665


Q ss_pred             CCCcc-ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          153 VLDKT-TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       153 Plt~~-t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                        +++ +...+ +..   ++.|.-+|-...|---++.+.++.+.+
T Consensus        76 --~p~~~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~  114 (124)
T PF01113_consen   76 --NPDAVYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELAK  114 (124)
T ss_dssp             ---HHHHHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred             --ChHHhHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence              233 22221 222   344666666556654344344444433

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.99  E-value=0.0022  Score=55.78  Aligned_cols=105  Identities=22%  Similarity=0.242  Sum_probs=62.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HHH------------HHhhhhhhhhhcCCCCcccc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANGEQPVTWK  133 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~  133 (294)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|+ +++.+|+..-..  ..+            -.+...+.+.... ....+.
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~   94 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-SDIQVT   94 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC-CCCEEE
Confidence            4689999999999999999999984 6787 788888762100  000            0000001111111 111110


Q ss_pred             ------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          134 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       134 ------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                            ...+++++++++|+|+.|+. +.+++..+++...+..+   -+|..
T Consensus        95 ~~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~i---p~i~~  142 (202)
T TIGR02356        95 ALKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGT---PLISA  142 (202)
T ss_pred             EehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC---CEEEE
Confidence                  11245678899999998875 56677777766555433   35554

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.99  E-value=0.0042  Score=55.85  Aligned_cols=108  Identities=20%  Similarity=0.178  Sum_probs=63.3

Q ss_pred             cCcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           67 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        67 ~g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      .|.+|+..|++|+|+ |.||..+||.|+ +-+.+....-+.......+..    ..+..    +.+.....|++..+.+.
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la-~~~~~~~ll~r~aea~~rq~l----~~l~e----~~~~~~i~s~d~~~~~e  231 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLA-PKVGVKELLLRDAEARNRQRL----TLLQE----ELGRGKIMSLDYALPQE  231 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhc-cccCEEEEecccHHhhhhhhh----hhccc----ccCCCeeeecccccccc
Confidence            478999999999999 999999999985 555443333222111110000    00111    11112234666555566


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHH
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  188 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~  188 (294)
                      |+++....  -.+-..|+.+.   +|||+.+|+-++..=||+.
T Consensus       232 ~i~v~vAs--~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~  269 (351)
T COG5322         232 DILVWVAS--MPKGVEIFPQH---LKPGCLIVDGGYPKDVDTS  269 (351)
T ss_pred             ceEEEEee--cCCCceechhh---ccCCeEEEcCCcCcccccc
Confidence            66544432  23455566654   6899999999887766554

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.97  E-value=0.0047  Score=55.69  Aligned_cols=66  Identities=21%  Similarity=0.266  Sum_probs=45.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+|+|+|+ |.||+.+++.+...-++++.+ +|+...... .        .     ...+.....+++++++++|+|+.+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~-~--------~-----~~~~i~~~~dl~~ll~~~DvVid~   67 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV-G--------Q-----GALGVAITDDLEAVLADADVLIDF   67 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc-c--------c-----CCCCccccCCHHHhccCCCEEEEC
Confidence            47999998 999999999874345788765 776543211 0        0     111223457899999899999977


Q ss_pred             cC
Q 022672          152 PV  153 (294)
Q Consensus       152 ~P  153 (294)
                      +|
T Consensus        68 t~   69 (257)
T PRK00048         68 TT   69 (257)
T ss_pred             CC
Confidence            76

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.96  E-value=0.005  Score=57.89  Aligned_cols=79  Identities=20%  Similarity=0.200  Sum_probs=46.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCCchhHHHHHHhhhhhhhhhc----C--CCCccccccCCHHHHhhcCC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKAN----G--EQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~l~ell~~aD  146 (294)
                      .+|||+|+|.||+.+++.+...-++++.+. |+.+ .....+...++-.....    .  ....+.....++++++.++|
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~-~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD   80 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKP-DYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD   80 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCCh-HHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence            379999999999999998754568888764 5432 21111111010000000    0  00011223356888888999


Q ss_pred             EEEEccC
Q 022672          147 VISLHPV  153 (294)
Q Consensus       147 iV~l~~P  153 (294)
                      +|+.|.|
T Consensus        81 VVIdaT~   87 (341)
T PRK04207         81 IVVDATP   87 (341)
T ss_pred             EEEECCC
Confidence            9999987

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.91  E-value=0.0009  Score=58.67  Aligned_cols=136  Identities=19%  Similarity=0.220  Sum_probs=84.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhh---hhcCCCCc-------------cccc
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KANGEQPV-------------TWKR  134 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~-------------~~~~  134 (294)
                      ..=+.|+|||.|.||..+|+.. ...|.+|+.+|.+..... +........+   ........             ....
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~-a~sg~~V~l~d~~~~aL~-~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~   86 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVA-ATSGLNVWLVDANEDALS-RATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT   86 (298)
T ss_pred             ccccceEEEcccccchhHHHHH-HhcCCceEEecCCHHHHH-HHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence            4456799999999999999984 689999999998865432 2222221111   11111111             0122


Q ss_pred             cCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCC
Q 022672          135 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  212 (294)
Q Consensus       135 ~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  212 (294)
                      ..++.++++++|+|+-++-.+-+.+.-+-++.=...|+.++|. |+|   .+...++..+++.. -+.++|-.|.+-|.
T Consensus        87 ~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTS---Sl~lt~ia~~~~~~-srf~GlHFfNPvPv  161 (298)
T KOG2304|consen   87 STNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTS---SLSLTDIASATQRP-SRFAGLHFFNPVPV  161 (298)
T ss_pred             cCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeeccc---ceeHHHHHhhccCh-hhhceeeccCCchh
Confidence            4567777888888887775444444333344445568887765 443   35566777787764 46888988877664

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.85  E-value=0.0014  Score=53.62  Aligned_cols=121  Identities=17%  Similarity=0.153  Sum_probs=69.3

Q ss_pred             EEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcC-CCCcccc-ccCCHHHHhhcCCEEEEccC
Q 022672           76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWK-RASSMDEVLREADVISLHPV  153 (294)
Q Consensus        76 vGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~ell~~aDiV~l~~P  153 (294)
                      |+|+|.|.||.-+|-+|+ ..|.+|..+++.. . .+.... .+-.+.... ....... ...+..+-....|+|++|+.
T Consensus         1 I~I~G~GaiG~~~a~~L~-~~g~~V~l~~r~~-~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLA-QAGHDVTLVSRSP-R-LEAIKE-QGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEESTSHHHHHHHHHHH-HTTCEEEEEESHH-H-HHHHHH-HCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECcCHHHHHHHHHHH-HCCCceEEEEccc-c-HHhhhh-eeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            689999999999999984 6999999999876 2 222111 010111111 0000000 11112245788999999997


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEE
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  203 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~  203 (294)
                      . .++...+. .....+.+++.++-.--| +-.++.|.+.+...++.++.
T Consensus        77 a-~~~~~~l~-~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~  123 (151)
T PF02558_consen   77 A-YQLEQALQ-SLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV  123 (151)
T ss_dssp             G-GGHHHHHH-HHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred             c-cchHHHHH-HHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence            3 34454443 355666777777766555 44456666666444554443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.83  E-value=0.0068  Score=54.39  Aligned_cols=87  Identities=14%  Similarity=0.198  Sum_probs=58.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      .++-|+|.|.+++++|+. ++.+|++|+++|+++....                           +..+..++.+....|
T Consensus       101 ~~L~IfGaG~va~~la~l-a~~lGf~V~v~D~R~~~~~---------------------------~~~~~~~~~~~~~~~  152 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRA-LAPLPCRVTWVDSREAEFP---------------------------EDLPDGVATLVTDEP  152 (246)
T ss_pred             CEEEEECCcHHHHHHHHH-HhcCCCEEEEEeCCccccc---------------------------ccCCCCceEEecCCH
Confidence            589999999999999998 4899999999997653100                           000123333322222


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  198 (294)
                                .+.+..+.+...+|=+.++.-.|.+.|..+|++..
T Consensus       153 ----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~  187 (246)
T TIGR02964       153 ----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRGD  187 (246)
T ss_pred             ----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCCC
Confidence                      23333455677777788888888888888885433

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.82  E-value=0.003  Score=59.32  Aligned_cols=93  Identities=22%  Similarity=0.240  Sum_probs=59.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh--------------------HHHHHHhhhhhhhhhcCC
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------------RLEKFVTAYGQFLKANGE  127 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~--------------------~~~~~~~~~~~~~~~~~~  127 (294)
                      ..|.+++|.|||+|.+|..+|+.|+ ..|+ ++..+|+..-.                    ..+...    +.+.... 
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~----~~l~~in-   93 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAK----EHLRKIN-   93 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHH----HHHHHHC-
Confidence            4699999999999999999999985 6787 78888875310                    000000    1111111 


Q ss_pred             CCcccc------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHh
Q 022672          128 QPVTWK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLA  168 (294)
Q Consensus       128 ~~~~~~------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~  168 (294)
                      ..+...      ...+++++++++|+|+.+.- +.+++.+++.-..+
T Consensus        94 p~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D-~~~~r~~in~~~~~  139 (338)
T PRK12475         94 SEVEIVPVVTDVTVEELEELVKEVDLIIDATD-NFDTRLLINDLSQK  139 (338)
T ss_pred             CCcEEEEEeccCCHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence            111111      11357788999999999984 67788777665544

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.81  E-value=0.0058  Score=59.16  Aligned_cols=122  Identities=12%  Similarity=0.108  Sum_probs=69.9

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh------H-HHH--HHhhh----hhhhhhcCCCCccccc
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT------R-LEK--FVTAY----GQFLKANGEQPVTWKR  134 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~------~-~~~--~~~~~----~~~~~~~~~~~~~~~~  134 (294)
                      |.+|.|+||.|.|+|++|+..|+.| ..+|++|++.......      . .+.  +...+    ...+... ....+...
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~-~~~~ga~~  300 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREY-AEKYGCKY  300 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhh-HhhcCCEE
Confidence            4579999999999999999999998 6899999984331110      0 000  00000    0000000 00001111


Q ss_pred             cCCHHHHh-hcCCEEEEccCCCccccccccHHHHhcCCCC-c-EEEEcCCCcccCHHHHHHHHHcCCc
Q 022672          135 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKE-A-ILVNCSRGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       135 ~~~l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~g-a-ilIN~aRG~~vd~~aL~~aL~~g~i  199 (294)
                       .+-++++ ..||+++-|.     +.+.|+++....++.. . +++-.+.+ .+..++. +.|.+..|
T Consensus       301 -i~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI  360 (444)
T PRK14031        301 -VEGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKI  360 (444)
T ss_pred             -cCCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCc
Confidence             1233432 5799988665     5788988888888653 4 55556666 5555555 44444444

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.81  E-value=0.0058  Score=56.95  Aligned_cols=129  Identities=16%  Similarity=0.209  Sum_probs=69.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      +..++|+|||.|.+|..+|..++ ..| .+++.+|..++.......+.... . .............+.+ .+++||+|+
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~-~-~~~~~~~~I~~~~d~~-~l~~aDiVI   79 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHS-N-VIAGSNSKVIGTNNYE-DIAGSDVVI   79 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhh-h-hccCCCeEEEECCCHH-HhCCCCEEE
Confidence            45579999999999999998864 445 48999998776422111111100 0 0011112233335664 579999999


Q ss_pred             EccCCCcc----------------cccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCcceEE
Q 022672          150 LHPVLDKT----------------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG  203 (294)
Q Consensus       150 l~~Plt~~----------------t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~--~g~i~ga~  203 (294)
                      ++.-....                +..++.  .+.+....|.+++|+++-..-+-...+.+...  ..++.|.+
T Consensus        80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            97632110                111110  11233345777999997433233333433321  23566655

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.80  E-value=0.0096  Score=54.87  Aligned_cols=76  Identities=14%  Similarity=0.330  Sum_probs=45.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.+|..+|..++ ..|. +|+.+|...........+.. +...... .........+.+ .+++||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la-~~~~~ev~L~D~~~~~~~~~~~dl~-~~~~~~~-~~~~i~~~~d~~-~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLA-LKELGDVVLFDIVEGVPQGKALDIA-EAAPVEG-FDTKITGTNDYE-DIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEEECCCchhHHHHHHHH-hhhhhcC-CCcEEEeCCCHH-HHCCCCEEEECC
Confidence            58999999999999999875 3333 99999986543222111111 0001001 111222234564 479999999986


Q ss_pred             C
Q 022672          153 V  153 (294)
Q Consensus       153 P  153 (294)
                      .
T Consensus        79 ~   79 (307)
T PRK06223         79 G   79 (307)
T ss_pred             C
Confidence            3

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.80  E-value=0.014  Score=55.25  Aligned_cols=122  Identities=16%  Similarity=0.196  Sum_probs=83.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHh--------hhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT--------AYGQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      ++|.|+|.|-+|-..+-.| ..+|.+|+.+|....+.. ....        +..+.+.... ..-......+.++.++++
T Consensus         1 MkI~viGtGYVGLv~g~~l-A~~GHeVv~vDid~~KV~-~ln~g~~PI~EpgLe~ll~~~~-~~gRl~fTtd~~~a~~~a   77 (414)
T COG1004           1 MKITVIGTGYVGLVTGACL-AELGHEVVCVDIDESKVE-LLNKGISPIYEPGLEELLKENL-ASGRLRFTTDYEEAVKDA   77 (414)
T ss_pred             CceEEECCchHHHHHHHHH-HHcCCeEEEEeCCHHHHH-HHhCCCCCCcCccHHHHHHhcc-ccCcEEEEcCHHHHHhcC
Confidence            4799999999999999988 489999999998765421 1111        1111111111 111133456888899999


Q ss_pred             CEEEEccCCCcccccccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672          146 DVISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~--------~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  198 (294)
                      |++++|+|..+...+-+|        ++..+.++..+++|+=|+-.+=-.+.+.+.+.+..
T Consensus        78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~  138 (414)
T COG1004          78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN  138 (414)
T ss_pred             CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence            999999995554455443        34567777779999999988877777776665543

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.80  E-value=0.097  Score=47.73  Aligned_cols=188  Identities=21%  Similarity=0.203  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcC----CC-------E
Q 022672           31 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N   99 (294)
Q Consensus        31 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~----g~-------~   99 (294)
                      +|=-+++-+|+.+|-                     .|..|.+.+|.|+|.|.-|..+|+.|. ..    |+       +
T Consensus         4 Ta~V~lAgllnAlk~---------------------~g~~l~d~~iv~~GAGsAg~gia~ll~-~~~~~~G~~~eeA~~~   61 (279)
T cd05312           4 TAAVALAGLLAALRI---------------------TGKPLSDQRILFLGAGSAGIGIADLIV-SAMVREGLSEEEARKK   61 (279)
T ss_pred             HHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHHcCCChhhccCe
Confidence            455677777777762                     235688999999999999999999874 33    66       7


Q ss_pred             EEEEcCCch-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEccCCCccccccccHHHHhcCC-
Q 022672          100 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK-  171 (294)
Q Consensus       100 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~~Plt~~t~~li~~~~l~~mk-  171 (294)
                      ++.+|+..-     .....+...|.+    ....    ....+|.|+++  +.|+++=+-    ..-++|+++.++.|. 
T Consensus        62 i~~vD~~Gll~~~r~~l~~~~~~~a~----~~~~----~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~  129 (279)
T cd05312          62 IWLVDSKGLLTKDRKDLTPFKKPFAR----KDEE----KEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAK  129 (279)
T ss_pred             EEEEcCCCeEeCCCCcchHHHHHHHh----hcCc----ccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHh
Confidence            888887621     011122222211    1110    12358999999  889987653    134899999999998 


Q ss_pred             --CCcEEEEcCCCccc---CHHHHHHHHHcCC-cceEEeeCCCCCCCC-CCCccCCCCeEEccCCCCC-----cHHHHHH
Q 022672          172 --KEAILVNCSRGPVI---DEVALVEHLKQNP-MFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASA-----SKWTREG  239 (294)
Q Consensus       172 --~gailIN~aRG~~v---d~~aL~~aL~~g~-i~ga~lDV~~~EP~~-~~~L~~~~nviiTPHia~~-----t~~~~~~  239 (294)
                        +..++.=.|+...-   ..++.+++ .+|+ |.+.+.-.-+.|.-- ...--+..|+++-|=++-.     ...-.+.
T Consensus       130 ~~~~PIIFaLSNPt~~~E~~pe~a~~~-t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~  208 (279)
T cd05312         130 SNERPIIFALSNPTSKAECTAEDAYKW-TDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDE  208 (279)
T ss_pred             cCCCCEEEECCCcCCccccCHHHHHHh-hcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHH
Confidence              89999999987652   23333333 2354 544443111111100 0123467899999987632     1122355


Q ss_pred             HHHHHHHHHHHHHc
Q 022672          240 MATLAALNVLGKIK  253 (294)
Q Consensus       240 ~~~~~~~nl~~~~~  253 (294)
                      |...+++-|.++..
T Consensus       209 m~~aAA~aLA~~~~  222 (279)
T cd05312         209 MFLAAAEALASLVT  222 (279)
T ss_pred             HHHHHHHHHHHhCC
Confidence            66666666666543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=96.79  E-value=0.008  Score=58.15  Aligned_cols=78  Identities=15%  Similarity=0.111  Sum_probs=49.2

Q ss_pred             CEEEEEcCChHHHHHHH--HHh---hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           74 QTVGVIGAGRIGSAYAR--MMV---EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~--~L~---~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+|+|||.|.+|.+.+-  .++   ...|.+|+.||+..... +...... .................++++.++.||+|
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l-~~~~~~~-~~~~~~~~~~~~I~~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERL-ETVEILA-KKIVEELGAPLKIEATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHH-HHHHHHH-HHHHHhcCCCeEEEEeCCHHHHhcCCCEE
Confidence            37999999999998554  222   22367999999886532 2111111 11111112223344567889999999999


Q ss_pred             EEccC
Q 022672          149 SLHPV  153 (294)
Q Consensus       149 ~l~~P  153 (294)
                      +.++|
T Consensus        79 i~ai~   83 (423)
T cd05297          79 INTIQ   83 (423)
T ss_pred             EEeeE
Confidence            99998

linked to 3D####ucture

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.79  E-value=0.012  Score=54.66  Aligned_cols=109  Identities=13%  Similarity=0.014  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCCchh------HHHHHHhhhh---hhhhhcCCCC--------ccccccC--CHHHHhhc
Q 022672           84 IGSAYARMMVEGFKMNLIYYDLYQAT------RLEKFVTAYG---QFLKANGEQP--------VTWKRAS--SMDEVLRE  144 (294)
Q Consensus        84 IG~~vA~~L~~~~g~~V~~~d~~~~~------~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~--~l~ell~~  144 (294)
                      ||..+|..++ ..|++|+.||+++..      ..+.......   +.....+...        .......  ++.+.+++
T Consensus         1 MG~giA~~~a-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~   79 (314)
T PRK08269          1 MGQGIALAFA-FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD   79 (314)
T ss_pred             CcHHHHHHHH-hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc
Confidence            6888998874 679999999998732      1111111100   0011111110        0111222  26688899


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  195 (294)
                      ||+|+-++|...+.+..+-.+..+.++++++|  ++.-+.+....|.+.++
T Consensus        80 aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~  128 (314)
T PRK08269         80 ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA  128 (314)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence            99999999999888888878888899999999  44556667777777764

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.79  E-value=0.0059  Score=48.28  Aligned_cols=100  Identities=14%  Similarity=0.209  Sum_probs=64.0

Q ss_pred             CEEEEEc----CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           74 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        74 ktvGIIG----lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      |+|+|||    -+..|..+.+.| +..|.+|+..++.....                   .+...+.+++|.-...|+++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDlav   60 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLAV   60 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEEE
T ss_pred             CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEEE
Confidence            6899999    699999999998 57999999998875431                   12334578888448899999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +++| .+.+..++ ++. ..+..+.+++..+    ..++++.+.+++..+.
T Consensus        61 v~~~-~~~~~~~v-~~~-~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   61 VCVP-PDKVPEIV-DEA-AALGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             E-S--HHHHHHHH-HHH-HHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             EEcC-HHHHHHHH-HHH-HHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            9999 23444444 232 2235678888877    6677788888776664

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.77  E-value=0.0024  Score=59.82  Aligned_cols=68  Identities=19%  Similarity=0.330  Sum_probs=47.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ++||||||-|..|+.++.. +..+|.+|++.|+.+........+.        - ....+.....+.++++.||+|..
T Consensus         1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~va~~--------~-i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQVADR--------V-IVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhcccc--------e-eecCCCCHHHHHHHHhhCCEEEE
Confidence            4799999999999999988 5899999999998876533221110        0 00011112358899999999943

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=96.76  E-value=0.0078  Score=55.78  Aligned_cols=111  Identities=17%  Similarity=0.173  Sum_probs=69.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhh------cCCCEE--EEEcCCchhHHHHHHhhhhhh-----hhhcCCCCccccccCC
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVE------GFKMNL--IYYDLYQATRLEKFVTAYGQF-----LKANGEQPVTWKRASS  137 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~------~~g~~V--~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  137 (294)
                      -.-++|+|||.|+.|+++|+.++.      .|..+|  |.++-......+...+-++..     ....-..+.......+
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            344789999999999999998642      234344  444433222111111211110     0111112223445678


Q ss_pred             HHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          138 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       138 l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +.+.+.+||+++..+|  .+-..-+-++.....|+++..|....|=
T Consensus        99 l~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~  142 (372)
T KOG2711|consen   99 LVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGV  142 (372)
T ss_pred             HHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecce
Confidence            9999999999999999  3334435578888999999999988773

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.73  E-value=0.0083  Score=53.76  Aligned_cols=121  Identities=22%  Similarity=0.325  Sum_probs=71.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEE--------cCCchhHHHHHHh---hhhhhhhhcCC-CCccccccCC
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQATRLEKFVT---AYGQFLKANGE-QPVTWKRASS  137 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~--------d~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~  137 (294)
                      ++.|+++.|-|+|.+|+.+|+.| ...|++|++.        |+..-. .+....   ..+..+..-.. .+.+... .+
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~vsD~~G~i~~~~Gld-~~~l~~~~~~~~~~v~~~~~~~~~~~~~-~~  105 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAVSDSSGAIYDPDGLD-VEELLRIKEERGSRVDDYPLESPDGAEY-IP  105 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEEEESSEEEEETTEEH-HHHHHHHHHHHSSHSTTGTHTCSSTSEE-EC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCceEEEcCCCch-HHHHHHHHHHhCCcccccccccccceeE-ec
Confidence            59999999999999999999998 5789998876        544321 111111   11110000000 0000111 12


Q ss_pred             HH-HHh-hcCCEEEEccCCCccccccccHHHHh-cCCCCc-EEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          138 MD-EVL-READVISLHPVLDKTTYHLINKERLA-TMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       138 l~-ell-~~aDiV~l~~Plt~~t~~li~~~~l~-~mk~ga-ilIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      -+ +++ .+||+++.|.     ..+.|+.+... .+++++ +++-.+.+.+- .++.. .|++..|.
T Consensus       106 ~~~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  106 NDDEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL  165 (244)
T ss_dssp             HHCHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E
T ss_pred             cccccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE
Confidence            22 555 6899999884     36678888777 777664 55666677765 44443 77777653

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.69  E-value=0.011  Score=57.67  Aligned_cols=118  Identities=19%  Similarity=0.184  Sum_probs=68.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      -+.+++|+|+|+|..|+++|+.| +..|++|.++|............    .+...+   ..+..-....+.+.++|+|+
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~g---i~~~~~~~~~~~~~~~dlVV   82 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVSN----ELKELG---VKLVLGENYLDKLDGFDVIF   82 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCCccchHHHH----HHHhCC---CEEEeCCCChHHhccCCEEE
Confidence            36789999999999999999997 69999999999765322111000    011111   11111122235567899998


Q ss_pred             EccCCCcccccc-----------ccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          150 LHPVLDKTTYHL-----------INK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       150 l~~Plt~~t~~l-----------i~~-~~l-~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      .. |.-+.+.-.           +++ +.+ ...+...+-|--+.|+.--..-|...|+.
T Consensus        83 ~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~  141 (458)
T PRK01710         83 KT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE  141 (458)
T ss_pred             EC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            87 433322222           221 122 22233345565567887777767777764

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.69  E-value=0.0095  Score=46.22  Aligned_cols=84  Identities=17%  Similarity=0.166  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccc
Q 022672           83 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  162 (294)
Q Consensus        83 ~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li  162 (294)
                      .-+..+++.| +..|++|.+|||..........          +. ..+.....++++.++.+|+|+++.+ -++-+.+-
T Consensus        17 Sp~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~   83 (106)
T PF03720_consen   17 SPALELIEEL-KERGAEVSVYDPYVDEEEIKEL----------GK-LEGVEVCDDLEEALKGADAVVLATD-HDEFRELD   83 (106)
T ss_dssp             -HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHHH----------CH-HHCEEEESSHHHHHTTESEEEESS---GGGGCCG
T ss_pred             CHHHHHHHHH-HHCCCEEEEECCccChHHHHhh----------CC-ccceEEecCHHHHhcCCCEEEEEec-CHHHhccC
Confidence            3466888887 6889999999998765432110          00 0113345689999999999999998 34444433


Q ss_pred             cHHHHhcCCCCcEEEEc
Q 022672          163 NKERLATMKKEAILVNC  179 (294)
Q Consensus       163 ~~~~l~~mk~gailIN~  179 (294)
                      -.+....|+++.++|++
T Consensus        84 ~~~~~~~~~~~~~iiD~  100 (106)
T PF03720_consen   84 WEEIAKLMRKPPVIIDG  100 (106)
T ss_dssp             HHHHHHHSCSSEEEEES
T ss_pred             HHHHHHhcCCCCEEEEC
Confidence            35566778889999987

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.68  E-value=0.016  Score=53.78  Aligned_cols=123  Identities=16%  Similarity=0.184  Sum_probs=67.0

Q ss_pred             CEEEEEcCChHHHHHHHHHh-hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~-~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .+|+|||.|.+|..+|-.|+ ++..-++..+|.+.+.......+-. . ....... .......+.++ +++||+|+++.
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~-~-~~~~~~~-~~v~~~~dy~~-~~~adivvita   79 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQ-H-GSAFLKN-PKIEADKDYSV-TANSKVVIVTA   79 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHH-H-hhccCCC-CEEEECCCHHH-hCCCCEEEECC
Confidence            48999999999999998764 2444589999987643222222210 0 0000000 12222356665 79999999865


Q ss_pred             CCCc---ccccc-c--cH-------HHHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHcCCcceE
Q 022672          153 VLDK---TTYHL-I--NK-------ERLATMKKEAILVNCSRGPVIDEVA--LVEH--LKQNPMFRV  202 (294)
Q Consensus       153 Plt~---~t~~l-i--~~-------~~l~~mk~gailIN~aRG~~vd~~a--L~~a--L~~g~i~ga  202 (294)
                      -...   +++-- +  |.       +.+....|.+++|+++  ..+|.-+  +.+.  +...++.|.
T Consensus        80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~  144 (312)
T cd05293          80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGS  144 (312)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEec
Confidence            4211   22311 1  11       2334457889999997  3344322  2232  334455555

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.65  E-value=0.009  Score=49.85  Aligned_cols=39  Identities=18%  Similarity=0.111  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      -.|.|++|.|||.|.+|...++.| ...|++|.++++...
T Consensus         9 l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~   47 (157)
T PRK06719          9 FNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEIC   47 (157)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccC
Confidence            479999999999999999999987 589999999976543

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.64  E-value=0.006  Score=64.79  Aligned_cols=77  Identities=19%  Similarity=0.239  Sum_probs=48.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCE-------------EEEEcCCchhHHHHHHhhhhhhhhhcCCC--Ccccccc
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRA  135 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  135 (294)
                      -+.|+|+|||.|.||+..|+.|++.-+.+             |.+.|++.... +.+.+.+      .+..  ...+...
T Consensus       567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-~~la~~~------~~~~~v~lDv~D~  639 (1042)
T PLN02819        567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-KETVEGI------ENAEAVQLDVSDS  639 (1042)
T ss_pred             ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-HHHHHhc------CCCceEEeecCCH
Confidence            35789999999999999999986544544             78889876442 2222211      0100  1111112


Q ss_pred             CCHHHHhhcCCEEEEccCC
Q 022672          136 SSMDEVLREADVISLHPVL  154 (294)
Q Consensus       136 ~~l~ell~~aDiV~l~~Pl  154 (294)
                      .++.++++++|+|++|+|.
T Consensus       640 e~L~~~v~~~DaVIsalP~  658 (1042)
T PLN02819        640 ESLLKYVSQVDVVISLLPA  658 (1042)
T ss_pred             HHHHHhhcCCCEEEECCCc
Confidence            2344445789999999994

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.61  E-value=0.0032  Score=59.92  Aligned_cols=94  Identities=22%  Similarity=0.268  Sum_probs=53.1

Q ss_pred             EEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhh-hhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           76 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAY-GQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        76 vGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      |+|+|.|.+|+.+++.|++.... +|++.|++..... +..+.. ...+.   ..........+++++++++|+|+.|+|
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~-~~~~~~~~~~~~---~~~~d~~~~~~l~~~~~~~dvVin~~g   76 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAE-RLAEKLLGDRVE---AVQVDVNDPESLAELLRGCDVVINCAG   76 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHH-HHHT--TTTTEE---EEE--TTTHHHHHHHHTTSSEEEE-SS
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHH-HHHhhcccccee---EEEEecCCHHHHHHHHhcCCEEEECCc
Confidence            78999999999999998655566 8999999876532 211100 00000   000111122347889999999999998


Q ss_pred             CCccccccccHHHH-hcCCCCcEEEEc
Q 022672          154 LDKTTYHLINKERL-ATMKKEAILVNC  179 (294)
Q Consensus       154 lt~~t~~li~~~~l-~~mk~gailIN~  179 (294)
                      ..      .+...+ ..++.|.-.||+
T Consensus        77 p~------~~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   77 PF------FGEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             GG------GHHHHHHHHHHHT-EEEES
T ss_pred             cc------hhHHHHHHHHHhCCCeecc
Confidence            32      222222 334556677774

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.60  E-value=0.0063  Score=53.26  Aligned_cols=96  Identities=19%  Similarity=0.225  Sum_probs=65.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      -.|.||+|.|||-|.+|..=++.| ...|++|+++.+.....+..+.+.        +..... ...-..++ +..+++|
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~~~~~~--------~~i~~~-~~~~~~~~-~~~~~lv   76 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELKALIEE--------GKIKWI-EREFDAED-LDDAFLV   76 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHHHHHHh--------cCcchh-hcccChhh-hcCceEE
Confidence            479999999999999999999987 589999999998874433332221        111110 11123333 4459999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +.+++..     -+|+..++.+++-.++||+.
T Consensus        77 iaAt~d~-----~ln~~i~~~a~~~~i~vNv~  103 (210)
T COG1648          77 IAATDDE-----ELNERIAKAARERRILVNVV  103 (210)
T ss_pred             EEeCCCH-----HHHHHHHHHHHHhCCceecc
Confidence            9998732     26677777777777889873

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.59  E-value=0.0063  Score=55.65  Aligned_cols=79  Identities=19%  Similarity=0.122  Sum_probs=51.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.|+++.|||.|.+|++++..| ...|+ +|+.++|+..+. +.+.+.++.    ... ...+....++.+.+.++|+|
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~ka-~~La~~~~~----~~~-~~~~~~~~~~~~~~~~~DiV  194 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDKL-SRLVDLGVQ----VGV-ITRLEGDSGGLAIEKAAEVL  194 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHHH-HHHHHHhhh----cCc-ceeccchhhhhhcccCCCEE
Confidence            46799999999999999999987 57887 699999886542 222222110    000 00010012344566889999


Q ss_pred             EEccCCC
Q 022672          149 SLHPVLD  155 (294)
Q Consensus       149 ~l~~Plt  155 (294)
                      +.+.|..
T Consensus       195 InaTp~g  201 (282)
T TIGR01809       195 VSTVPAD  201 (282)
T ss_pred             EECCCCC
Confidence            9999853

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.58  E-value=0.0078  Score=55.41  Aligned_cols=74  Identities=15%  Similarity=0.285  Sum_probs=43.3

Q ss_pred             EEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           76 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        76 vGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      |+|||.|.+|..+|..++ ..|. +|+.+|...........+.. +.... ...........+.++ +++||+|+++..
T Consensus         1 I~IIGaG~vG~~ia~~la-~~~l~eV~L~Di~e~~~~g~~~dl~-~~~~~-~~~~~~I~~t~d~~~-l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLA-LKELGDVVLLDIVEGLPQGKALDIS-QAAPI-LGSDTKVTGTNDYED-IAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHH-hCCCcEEEEEeCCCcHHHHHHHHHH-Hhhhh-cCCCeEEEEcCCHHH-hCCCCEEEEecC
Confidence            689999999999998874 3333 99999987643211111110 10101 011112222345554 799999999774

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.57  E-value=0.0061  Score=58.72  Aligned_cols=108  Identities=20%  Similarity=0.239  Sum_probs=63.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .++|.|||+|.+|.++|+.| +..|.+|.++|++.......  . +   .        ........+.+..++|+++.+.
T Consensus         3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~~~~~~--~-~---~--------~~~~~~~~~~~~~~~dlvV~s~   67 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLEALQSC--P-Y---I--------HERYLENAEEFPEQVDLVVRSP   67 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCccccchh--H-H---H--------hhhhcCCcHHHhcCCCEEEECC
Confidence            36899999999999999997 68999999999765421100  0 0   0        0000123344557899988887


Q ss_pred             CCCccccc-----------cccHHHH--hc--CCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 022672          153 VLDKTTYH-----------LINKERL--AT--MKK-EAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       153 Plt~~t~~-----------li~~~~l--~~--mk~-gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      +..+. ..           ++....+  ..  +.+ -.+=|--+-|+.--..=|...|+.
T Consensus        68 gi~~~-~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~  126 (418)
T PRK00683         68 GIKKE-HPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR  126 (418)
T ss_pred             CCCCC-cHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence            65432 21           2222111  21  212 234455566777666666677754

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.55  E-value=0.0095  Score=55.39  Aligned_cols=103  Identities=18%  Similarity=0.267  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+++|+|||.|.+|..+|-.| ...|.  ++..+|.+.........+-. .-. ... ..... ...+. +.+++||+|+
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l-~~~~~~~el~L~D~~~~~~~g~~~Dl~-~~~-~~~-~~~~i-~~~~~-~~~~~adivI   78 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYAL-VNQGIADELVIIDINKEKAEGDAMDLS-HAV-PFT-SPTKI-YAGDY-SDCKDADLVV   78 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCCchhHHHHHHHH-hhc-ccc-CCeEE-EeCCH-HHhCCCCEEE
Confidence            467999999999999999987 45565  89999986543222211110 000 000 11111 22344 4479999998


Q ss_pred             EccCCCc---cccc-cc--c----HH---HHhcCCCCcEEEEcC
Q 022672          150 LHPVLDK---TTYH-LI--N----KE---RLATMKKEAILVNCS  180 (294)
Q Consensus       150 l~~Plt~---~t~~-li--~----~~---~l~~mk~gailIN~a  180 (294)
                      ++.-...   .++- ++  |    ++   .+....|.+++|+++
T Consensus        79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            8764311   1221 11  1    11   222234788999987

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.54  E-value=0.02  Score=55.51  Aligned_cols=123  Identities=14%  Similarity=0.124  Sum_probs=72.6

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEE--------EcCCchhH-----HHHHHhhhhhhhhhc-CCCCcccc
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQATR-----LEKFVTAYGQFLKAN-GEQPVTWK  133 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~--------~d~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~  133 (294)
                      |.++.|+||.|=|+|++|+..|+.| ..+|++|++        ||+.--..     +.+..+..+..+... ...+ +..
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~-ga~  300 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP-GST  300 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC-CCE
Confidence            4579999999999999999999998 689999999        77542211     111111100000000 0000 111


Q ss_pred             ccCCHHHHh-hcCCEEEEccCCCccccccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          134 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       134 ~~~~l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk--~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      .. +-++++ ..||+++-|.     +.+.|+.+....+.  .=.+++-.+-+ .+..+|- +.|++..|.
T Consensus       301 ~i-~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~  362 (445)
T PRK14030        301 FF-AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL  362 (445)
T ss_pred             Ec-CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE
Confidence            11 223333 4689887665     67888888777772  23467777788 4555443 666666553

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.53  E-value=0.12  Score=47.92  Aligned_cols=142  Identities=20%  Similarity=0.168  Sum_probs=84.1

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC-ChHHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA   89 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA   89 (294)
                      +.++..+|+|-|.-+....++--  |+=++.+.++                     .| .+.|.+|+++|- +++-++++
T Consensus       110 ~~a~~~~vPVINa~~~~~HPtQa--L~Dl~Ti~e~---------------------~g-~l~g~~v~~vGd~~~v~~Sl~  165 (304)
T TIGR00658       110 ELAKYASVPVINGLTDLFHPCQA--LADLLTIIEH---------------------FG-KLKGVKVVYVGDGNNVCNSLM  165 (304)
T ss_pred             HHHHhCCCCEEECCCCCCChHHH--HHHHHHHHHH---------------------hC-CCCCcEEEEEeCCCchHHHHH
Confidence            45666789999986655444322  2222222221                     12 378999999997 67888888


Q ss_pred             HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc-C-CCc----------c
Q 022672           90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP-V-LDK----------T  157 (294)
Q Consensus        90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~-P-lt~----------~  157 (294)
                      ..+ ..||++|....|..-...+.+.+..-......+   ..+....++++.++++|+|..-. . ...          .
T Consensus       166 ~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~  241 (304)
T TIGR00658       166 LAG-AKLGMDVVVATPEGYEPDADIVKKAQEIAKENG---GSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLF  241 (304)
T ss_pred             HHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHh
Confidence            876 589999998887542211111111000001111   12334578999999999997742 1 010          0


Q ss_pred             ccccccHHHHhcCCCCcEEEEcC
Q 022672          158 TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       158 t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ....++++.++.+|++++|..+.
T Consensus       242 ~~y~l~~~~l~~~~~~~ivmHpl  264 (304)
T TIGR00658       242 RPYQVNEELMELAKPEVIFMHCL  264 (304)
T ss_pred             cCCcCCHHHHhhcCCCCEEECCC
Confidence            12356778888888888887763

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.52  E-value=0.0066  Score=53.67  Aligned_cols=106  Identities=25%  Similarity=0.224  Sum_probs=63.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HHH-H-----------HhhhhhhhhhcCCCCcccc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK-F-----------VTAYGQFLKANGEQPVTWK  133 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~~-~-----------~~~~~~~~~~~~~~~~~~~  133 (294)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|+ +++.+|...-..  ..+ +           .+...+.+.... ....+.
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~~i~   94 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN-PDVEIE   94 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC-CCCEEE
Confidence            4689999999999999999999985 6777 677777543110  000 0           000001111111 111111


Q ss_pred             ------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          134 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       134 ------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                            ...+++++++++|+|+.|+. +.+++.++++...+   .+.-+|.++
T Consensus        95 ~~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g  143 (228)
T cd00757          95 AYNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA  143 (228)
T ss_pred             EecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence                  11345678899999999987 56777777765554   344566664

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.50  E-value=0.08  Score=47.59  Aligned_cols=189  Identities=14%  Similarity=0.102  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCC-----------E
Q 022672           31 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-----------N   99 (294)
Q Consensus        31 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-----------~   99 (294)
                      +|=-+++-+|+.+|-                     .|+.|.+.+|.|+|.|..|-.+|+.|. ..++           +
T Consensus         4 TaaV~lAgllnAlk~---------------------~g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~Gls~e~A~~~   61 (254)
T cd00762           4 TASVAVAGLLAALKV---------------------TKKKISEHKVLFNGAGAAALGIANLIV-XLXVKEGISKEEACKR   61 (254)
T ss_pred             hHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHhcCCCHHHHhcc
Confidence            455667777777762                     235688999999999999999999874 4433           6


Q ss_pred             EEEEcCCchh---H--HHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEccCCCccccccccHHHHhcCC-
Q 022672          100 LIYYDLYQAT---R--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK-  171 (294)
Q Consensus       100 V~~~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~~Plt~~t~~li~~~~l~~mk-  171 (294)
                      ++.+|+..--   +  ...+...+.+...  .     .....+|.|+++  +.|+++=..    ..-++|.++.++.|. 
T Consensus        62 i~~vD~~Gll~~~r~~l~~~~~~~~~~~~--~-----~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~  130 (254)
T cd00762          62 IWXVDRKGLLVKNRKETCPNEYHLARFAN--P-----ERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAE  130 (254)
T ss_pred             EEEECCCCeEeCCCCccCHHHHHHHHHcC--c-----ccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhh
Confidence            8888876210   0  1111111000000  0     012358999999  999987643    235899999999998 


Q ss_pred             --CCcEEEEcCCCccc---CHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCc-----HHHHHHH
Q 022672          172 --KEAILVNCSRGPVI---DEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASAS-----KWTREGM  240 (294)
Q Consensus       172 --~gailIN~aRG~~v---d~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t-----~~~~~~~  240 (294)
                        +..++.=.|+...-   ..++.+++=+-..|.+.+.-.+.++-.-. ...-+..|+++-|=++-..     ....+.|
T Consensus       131 ~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m  210 (254)
T cd00762         131 INERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDV  210 (254)
T ss_pred             cCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHH
Confidence              89999999987762   33333333222234444432222211000 1234678999999876321     1122455


Q ss_pred             HHHHHHHHHHHH
Q 022672          241 ATLAALNVLGKI  252 (294)
Q Consensus       241 ~~~~~~nl~~~~  252 (294)
                      ...+++-|.++.
T Consensus       211 ~~aAA~aLA~~v  222 (254)
T cd00762         211 FLSAAEAIASSV  222 (254)
T ss_pred             HHHHHHHHHhhC
Confidence            555666666554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=96.49  E-value=0.065  Score=50.18  Aligned_cols=142  Identities=18%  Similarity=0.186  Sum_probs=82.4

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY   88 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~v   88 (294)
                      +.++..+|+|.|.-+....++-  +|+=++.+.++               |      | .+.|+||++||-+  ++.+++
T Consensus       117 ~~a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~---------------~------g-~l~g~~va~vGd~~~~v~~Sl  172 (331)
T PRK02102        117 ELAKYSGVPVWNGLTDEWHPTQ--MLADFMTMKEH---------------F------G-PLKGLKLAYVGDGRNNMANSL  172 (331)
T ss_pred             HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH---------------h------C-CCCCCEEEEECCCcccHHHHH
Confidence            4556678999998665433322  22222222211               1      1 3789999999997  788888


Q ss_pred             HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC--Cc-----c----
Q 022672           89 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL--DK-----T----  157 (294)
Q Consensus        89 A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl--t~-----~----  157 (294)
                      +..+ ..||++|....|..-...+.+.+..-......+   ..+....++++.++++|+|..-+=.  ..     +    
T Consensus       173 ~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~~~  248 (331)
T PRK02102        173 MVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETG---AKITITEDPEEAVKGADVIYTDVWVSMGEEDEWEERIKL  248 (331)
T ss_pred             HHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEEcCcccCccccchHHHHHh
Confidence            8876 589999998877542211121111000011111   1233457899999999999774310  00     0    


Q ss_pred             -ccccccHHHHh-cCCCCcEEEEcC
Q 022672          158 -TYHLINKERLA-TMKKEAILVNCS  180 (294)
Q Consensus       158 -t~~li~~~~l~-~mk~gailIN~a  180 (294)
                       ...-++++.++ .+|++++|..+.
T Consensus       249 ~~~y~vt~ell~~~~~~d~ivmH~l  273 (331)
T PRK02102        249 LKPYQVNMDLMKATGNPDVIFMHCL  273 (331)
T ss_pred             ccCCcCCHHHHhhhcCCCCEEECCC
Confidence             12335677777 478888887763

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.46  E-value=0.03  Score=51.37  Aligned_cols=81  Identities=19%  Similarity=0.222  Sum_probs=49.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCch--hHHHHHHhhhhhhhhhcCCCCcccccc---CCHHHHh
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVL  142 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell  142 (294)
                      ..+.||++.|+|.|..+++++-.|+ ..|+ +|++++|+..  ...+.+.+.+..    ...........   ..+++.+
T Consensus       120 ~~~~~k~vlvlGaGGaarAi~~~l~-~~g~~~i~i~nRt~~~~~ka~~la~~~~~----~~~~~~~~~~~~~~~~l~~~~  194 (288)
T PRK12749        120 FDIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRVNE----NTDCVVTVTDLADQQAFAEAL  194 (288)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEeCCccHHHHHHHHHHHhhh----ccCceEEEechhhhhhhhhhc
Confidence            4578999999999999999998764 5676 7999999753  222333222111    00000111111   1133456


Q ss_pred             hcCCEEEEccCC
Q 022672          143 READVISLHPVL  154 (294)
Q Consensus       143 ~~aDiV~l~~Pl  154 (294)
                      .++|+|+.+.|.
T Consensus       195 ~~aDivINaTp~  206 (288)
T PRK12749        195 ASADILTNGTKV  206 (288)
T ss_pred             ccCCEEEECCCC
Confidence            689999999984

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.46  E-value=0.013  Score=54.02  Aligned_cols=125  Identities=14%  Similarity=0.103  Sum_probs=71.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|+|+|.|.||.-+|-+| ...|.+|..+++.... .+.+...-+-.+...+. ...+.....-.+.....|+|++++-
T Consensus         3 m~I~IiGaGaiG~~~a~~L-~~~G~~V~lv~r~~~~-~~~i~~~~Gl~i~~~g~-~~~~~~~~~~~~~~~~~D~viv~vK   79 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRL-ARAGLPVRLILRDRQR-LAAYQQAGGLTLVEQGQ-ASLYAIPAETADAAEPIHRLLLACK   79 (305)
T ss_pred             ceEEEECCCHHHHHHHHHH-HhCCCCeEEEEechHH-HHHHhhcCCeEEeeCCc-ceeeccCCCCcccccccCEEEEECC
Confidence            4799999999999999998 4678999999886422 22211100000111111 0111100111123467899999987


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  204 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~l  204 (294)
                      .. ++...+ +.....+.+++.+|-.--| +-.++.+.+.+...++.++..
T Consensus        80 ~~-~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~  127 (305)
T PRK05708         80 AY-DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS  127 (305)
T ss_pred             HH-hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence            33 333333 4455667788887766544 345566777776556655443

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.45  E-value=0.1  Score=48.90  Aligned_cols=144  Identities=13%  Similarity=0.103  Sum_probs=83.5

Q ss_pred             HHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHH
Q 022672           10 VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSA   87 (294)
Q Consensus        10 ~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~   87 (294)
                      .+.++..+|+|-|.-+....++-  +|+=++.+.++                     .|..+.|++|++||=+  ++.++
T Consensus       116 ~~~a~~~~vPVINa~~~~~HPtQ--aL~Dl~Ti~e~---------------------~g~~l~gl~ia~vGD~~~~v~~S  172 (334)
T PRK01713        116 NELAEYAGVPVFNGLTDEFHPTQ--MLADVLTMIEN---------------------CDKPLSEISYVYIGDARNNMGNS  172 (334)
T ss_pred             HHHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH---------------------cCCCcCCcEEEEECCCccCHHHH
Confidence            34566778999998665433321  12222222211                     1224789999999986  57888


Q ss_pred             HHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc----CCCcc------
Q 022672           88 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP----VLDKT------  157 (294)
Q Consensus        88 vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~----Plt~~------  157 (294)
                      ++..+ ..+|++|....|..-...+.+.+.........+   ..+....++++.++++|+|..-.    ....+      
T Consensus       173 l~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~  248 (334)
T PRK01713        173 LLLIG-AKLGMDVRICAPKALLPEASLVEMCEKFAKESG---ARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERI  248 (334)
T ss_pred             HHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHH
Confidence            88776 579999999887532111111100000001111   12344579999999999997632    10000      


Q ss_pred             ---ccccccHHHHhcC-CCCcEEEEcC
Q 022672          158 ---TYHLINKERLATM-KKEAILVNCS  180 (294)
Q Consensus       158 ---t~~li~~~~l~~m-k~gailIN~a  180 (294)
                         ....++++.++.. |++++|..+.
T Consensus       249 ~~~~~y~v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        249 KLLMPYQVTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             HhccCCcCCHHHHhccCCCCCEEECCC
Confidence               1233677888875 7889998874

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.40  E-value=0.0067  Score=49.66  Aligned_cols=76  Identities=21%  Similarity=0.351  Sum_probs=47.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+|+|||. |.+|+.+|-.|.. ++.-++..+|...........+- ...... .  ...........+.+++||+|+++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl-~~~~~~-~--~~~~~i~~~~~~~~~~aDivvit   76 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDL-SHASAP-L--PSPVRITSGDYEALKDADIVVIT   76 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHH-HHHHHG-S--TEEEEEEESSGGGGTTESEEEET
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhh-hhhhhh-c--ccccccccccccccccccEEEEe
Confidence            37999999 9999999987643 56678999999865332222111 000000 0  01111223556778999999998


Q ss_pred             cC
Q 022672          152 PV  153 (294)
Q Consensus       152 ~P  153 (294)
                      .-
T Consensus        77 ag   78 (141)
T PF00056_consen   77 AG   78 (141)
T ss_dssp             TS
T ss_pred             cc
Confidence            84

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK11579 putative oxidoreductase; Provisional

Probab=96.38  E-value=0.034  Score=52.15  Aligned_cols=66  Identities=17%  Similarity=0.147  Sum_probs=43.8

Q ss_pred             CEEEEEcCChHHHH-HHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 022672           74 QTVGVIGAGRIGSA-YARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~-vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  149 (294)
                      .+|||||+|.||+. .+..+.+.-++++.+ +|+......    ..+       .    +...+.+++++++  +.|+|+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~----~~~-------~----~~~~~~~~~ell~~~~vD~V~   69 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK----ADW-------P----TVTVVSEPQHLFNDPNIDLIV   69 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH----hhC-------C----CCceeCCHHHHhcCCCCCEEE
Confidence            37999999999984 556553334788764 677643211    100       0    1123579999996  579999


Q ss_pred             EccCC
Q 022672          150 LHPVL  154 (294)
Q Consensus       150 l~~Pl  154 (294)
                      +|+|.
T Consensus        70 I~tp~   74 (346)
T PRK11579         70 IPTPN   74 (346)
T ss_pred             EcCCc
Confidence            99994

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.38  E-value=0.042  Score=53.32  Aligned_cols=124  Identities=18%  Similarity=0.150  Sum_probs=68.6

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCc---------hhHHHHHHh---hhhhhhhhcCCCCccccc
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ---------ATRLEKFVT---AYGQFLKANGEQPVTWKR  134 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~---------~~~~~~~~~---~~~~~~~~~~~~~~~~~~  134 (294)
                      +.++.|+||.|=|+|++|+..|+.| ..+|++|+ +.|.+.         ...+....+   .....+..-.....+...
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~  310 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY  310 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE
Confidence            4579999999999999999999998 68999998 445440         111100000   000000000000001111


Q ss_pred             cCCHHHHh-hcCCEEEEccCCCccccccccHHHHhcC-CCCcE-EEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          135 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATM-KKEAI-LVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       135 ~~~l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~m-k~gai-lIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      . +-++++ -.||+.+-|.     +.+.|+.+..+.+ +.++. ++--+-+.+-. + -.+.|++..|.
T Consensus       311 ~-~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-e-A~~~L~~~GI~  371 (454)
T PTZ00079        311 V-PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI-E-ATHLFKKNGVI  371 (454)
T ss_pred             e-CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH-H-HHHHHHHCCcE
Confidence            1 112222 4789888775     6788888777655 44544 45556666544 3 34566665553

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.38  E-value=0.0092  Score=52.76  Aligned_cols=75  Identities=19%  Similarity=0.189  Sum_probs=47.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~l~~  152 (294)
                      +++.|+|+|.+|+.+|+.| ...|++|+..|.......+...+.+...    ..... ......|+++ +.++|+++.+.
T Consensus         1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~~~----~v~gd-~t~~~~L~~agi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELDTH----VVIGD-ATDEDVLEEAGIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcceE----EEEec-CCCHHHHHhcCCCcCCEEEEee
Confidence            5799999999999999998 6899999999987654322111101000    00000 0111235555 68899999998


Q ss_pred             CC
Q 022672          153 VL  154 (294)
Q Consensus       153 Pl  154 (294)
                      ..
T Consensus        75 ~~   76 (225)
T COG0569          75 GN   76 (225)
T ss_pred             CC
Confidence            73

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.32  E-value=0.041  Score=53.27  Aligned_cols=119  Identities=23%  Similarity=0.288  Sum_probs=70.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+.+|++.|+|.|.+|.++|+.| ...|++|+++|+..........+.    +...+   .........++....+|+|+
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~----l~~~~---~~~~~~~~~~~~~~~~d~vv   73 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEE----LGELG---IELVLGEYPEEFLEGVDLVV   73 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHH----HHhcC---CEEEeCCcchhHhhcCCEEE
Confidence            36789999999999999999998 589999999998753322221111    11111   11112223345677899998


Q ss_pred             EccCCCcccccc----------cc-HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          150 LHPVLDKTTYHL----------IN-KERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       150 l~~Plt~~t~~l----------i~-~~~l~~-mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      .+.-..+....+          +. .+.+.. .+...+-|--+.|+.--..-|...|+.
T Consensus        74 ~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         74 VSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            876543332211          11 112222 232344454567887777777777754

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=96.31  E-value=0.039  Score=51.78  Aligned_cols=106  Identities=13%  Similarity=0.165  Sum_probs=63.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.|++|++||= .++.++++..+ ..+|++|....|..-...+.+.+.........+   ..+....++++.++++|+|
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~eav~~aDvv  226 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSG---GSVLVTDDVDEAVKDADFV  226 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHHHHHHHHhcC---CeEEEEcCHHHHhCCCCEE
Confidence            588999999998 57888888776 579999999887532111111110000001111   1233457999999999999


Q ss_pred             EEcc-----CCCc---c------ccccccHHHHhcCCCCcEEEEc
Q 022672          149 SLHP-----VLDK---T------TYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       149 ~l~~-----Plt~---~------t~~li~~~~l~~mk~gailIN~  179 (294)
                      ..-.     ....   +      -...++++.++.+|++++|..+
T Consensus       227 y~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHp  271 (338)
T PRK02255        227 YTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHC  271 (338)
T ss_pred             EEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCC
Confidence            8732     1100   0      0134566666667777666665

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=96.28  E-value=0.044  Score=50.65  Aligned_cols=103  Identities=23%  Similarity=0.330  Sum_probs=66.4

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           70 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        70 ~l~gktvGIIGlG---~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      .+.|++|+++|-|   ++.++++..+ ..||++|....|..-...+.+.+.    +...+   ..+....++++.++++|
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~~----~~~~G---~~v~~~~d~~~a~~~aD  218 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILEE----LKAKG---IKVRETESLEEVIDEAD  218 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHH----HHHcC---CEEEEECCHHHHhCCCC
Confidence            4889999999995   9999999986 589999999887542111222111    11111   22334578999999999


Q ss_pred             EEEEccCCCc------c-----ccccccHHHHhcCCCCcEEEEcC
Q 022672          147 VISLHPVLDK------T-----TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       147 iV~l~~Plt~------~-----t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +|..----.+      +     ...-++++.++.++++++|..+.
T Consensus       219 vvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl  263 (301)
T TIGR00670       219 VLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL  263 (301)
T ss_pred             EEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence            9976321000      0     02235667777778888777663

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=96.24  E-value=0.017  Score=58.10  Aligned_cols=62  Identities=23%  Similarity=0.351  Sum_probs=44.7

Q ss_pred             CcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccC-cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEc
Q 022672           27 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYD  104 (294)
Q Consensus        27 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d  104 (294)
                      .....||-++-|=|-+.|                |.-....+ ..|.+.+|.|||.|.+|..+|+.| .+.|+ +++.+|
T Consensus       307 dP~~la~~avdlnlkLmk----------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~L-a~~GVg~ItlVD  369 (664)
T TIGR01381       307 DPKRLAERSVDLNLKLMK----------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCL-IGWGVRHITFVD  369 (664)
T ss_pred             CHHHHHHHHHHHHHHHHh----------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHH-HHcCCCeEEEEc
Confidence            456677877776665554                43221111 468999999999999999999998 47887 577777


Q ss_pred             C
Q 022672          105 L  105 (294)
Q Consensus       105 ~  105 (294)
                      .
T Consensus       370 ~  370 (664)
T TIGR01381       370 N  370 (664)
T ss_pred             C
Confidence            4

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.22  E-value=0.12  Score=48.98  Aligned_cols=106  Identities=22%  Similarity=0.289  Sum_probs=63.4

Q ss_pred             ccCCCEEEEEcCC--------hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 022672           70 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  141 (294)
Q Consensus        70 ~l~gktvGIIGlG--------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  141 (294)
                      .|.|+||+|+|.|        ++.++++..+ ..||++|....|..-...+...+.....+...+   ..+....++++.
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g---~~~~~~~d~~ea  242 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENG---GKFNIVNSMDEA  242 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            3789999999853        4456777765 579999999887532111111111000011112   223345799999


Q ss_pred             hhcCCEEEEcc----C----------CCcc-----------------ccccccHHHHhcCC-CCcEEEEc
Q 022672          142 LREADVISLHP----V----------LDKT-----------------TYHLINKERLATMK-KEAILVNC  179 (294)
Q Consensus       142 l~~aDiV~l~~----P----------lt~~-----------------t~~li~~~~l~~mk-~gailIN~  179 (294)
                      ++++|+|..-.    .          ..+.                 ....++++.++.+| ++++|..+
T Consensus       243 ~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHc  312 (357)
T TIGR03316       243 FKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHC  312 (357)
T ss_pred             hCCCCEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECC
Confidence            99999997653    1          0000                 12236777777777 77888777

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.21  E-value=0.02  Score=52.97  Aligned_cols=75  Identities=20%  Similarity=0.201  Sum_probs=46.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ++|+|||.|.+|..+|..|+ ..|  .++..+|+..........+.....  ... .+... ...+. +.+++||+|+++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~-~~g~~~ev~l~D~~~~~~~g~a~dl~~~~--~~~-~~~~i-~~~d~-~~l~~aDiViit   74 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALL-LRGLASEIVLVDINKAKAEGEAMDLAHGT--PFV-KPVRI-YAGDY-ADCKGADVVVIT   74 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHH-HcCCCCEEEEEECCchhhhhHHHHHHccc--ccc-CCeEE-eeCCH-HHhCCCCEEEEc
Confidence            37999999999999999874 556  589999987643221111110000  000 01111 12345 458999999999


Q ss_pred             cCC
Q 022672          152 PVL  154 (294)
Q Consensus       152 ~Pl  154 (294)
                      .+.
T Consensus        75 a~~   77 (308)
T cd05292          75 AGA   77 (308)
T ss_pred             cCC
Confidence            985

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.21  E-value=0.19  Score=46.57  Aligned_cols=139  Identities=19%  Similarity=0.168  Sum_probs=83.1

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC-ChHHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA   89 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA   89 (294)
                      +.++..+++|-|+-+....++-  +++=++.+.++                     .| .+.|++|+++|- +++.++++
T Consensus       114 ~~a~~~~vPVINag~~~~HPtQ--aL~Dl~Ti~e~---------------------~g-~l~gl~i~~vGd~~~v~~Sl~  169 (304)
T PRK00779        114 ELAEYSTVPVINGLTDLSHPCQ--ILADLLTIYEH---------------------RG-SLKGLKVAWVGDGNNVANSLL  169 (304)
T ss_pred             HHHHhCCCCEEeCCCCCCChHH--HHHHHHHHHHH---------------------hC-CcCCcEEEEEeCCCccHHHHH
Confidence            4456678999999765544432  22222222221                     12 378899999998 78889998


Q ss_pred             HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc----CCCc---c-----
Q 022672           90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP----VLDK---T-----  157 (294)
Q Consensus        90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~----Plt~---~-----  157 (294)
                      ..+ ..+|++|....|..-...+...+.   .....+   ..+....++++.++++|+|..-.    ....   +     
T Consensus       170 ~~l-~~~g~~v~~~~P~~~~~~~~~~~~---~~~~~g---~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~  242 (304)
T PRK00779        170 LAA-ALLGFDLRVATPKGYEPDPEIVEK---IAKETG---ASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAF  242 (304)
T ss_pred             HHH-HHcCCEEEEECCcccCCCHHHHHH---HHHHcC---CeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHh
Confidence            886 589999999887542211111111   011111   12334579999999999997642    1100   0     


Q ss_pred             ccccccHHHHhcCCCCcEEEEcC
Q 022672          158 TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       158 t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ...-++++.++.+|++++|..+.
T Consensus       243 ~~y~v~~~~l~~~~~~~ivmHpl  265 (304)
T PRK00779        243 APYQVNEELMALAKPDAIFMHCL  265 (304)
T ss_pred             cccCCCHHHHHhcCCCeEEecCC
Confidence            12335677777777777777663

>PRK12862 malic enzyme; Reviewed

Probab=96.19  E-value=0.24  Score=51.47  Aligned_cols=165  Identities=18%  Similarity=0.241  Sum_probs=106.6

Q ss_pred             CCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhc
Q 022672           16 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG   95 (294)
Q Consensus        16 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~   95 (294)
                      .+|+|.|. +.  +-+|=-+++-+++.+|-                     .|+.+.+.+|.|.|.|.-|-.+|+.| ..
T Consensus       160 ~~ip~f~D-D~--~GTa~v~la~l~~a~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~  214 (763)
T PRK12862        160 MKIPVFHD-DQ--HGTAIIVAAALLNGLKL---------------------VGKDIEDVKLVASGAGAAALACLDLL-VS  214 (763)
T ss_pred             CCCceEec-Cc--ccHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEEChhHHHHHHHHHH-HH
Confidence            35788887 33  33455667777777762                     24578899999999999999999998 46


Q ss_pred             CCC---EEEEEcCCch---hH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHH
Q 022672           96 FKM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  166 (294)
Q Consensus        96 ~g~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~  166 (294)
                      .|.   +++.+|+..-   .+   .......|    ...       ....+|+|+++.+|+++=+-     +-+.++++.
T Consensus       215 ~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~----a~~-------~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~  278 (763)
T PRK12862        215 LGVKRENIWVTDIKGVVYEGRTELMDPWKARY----AQK-------TDARTLAEVIEGADVFLGLS-----AAGVLKPEM  278 (763)
T ss_pred             cCCCcccEEEEcCCCeeeCCCCccccHHHHHH----hhh-------cccCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence            787   7899995521   00   11111111    111       01258999999999887543     258999999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCC
Q 022672          167 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  230 (294)
Q Consensus       167 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia  230 (294)
                      ++.|.+..++.=.|....--..+....-..|.|.+.+-   ...|      -+..|+++-|-++
T Consensus       279 v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atGr---s~~p------~Q~NN~~~FPgi~  333 (763)
T PRK12862        279 VKKMAPRPLIFALANPTPEILPEEARAVRPDAIIATGR---SDYP------NQVNNVLCFPYIF  333 (763)
T ss_pred             HHHhccCCEEEeCCCCcccCCHHHHHHhcCCEEEEECC---cCCC------Ccccceeeccchh
Confidence            99999999999999877521222222222234544441   1111      3567899999765

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.18  E-value=0.019  Score=56.08  Aligned_cols=96  Identities=15%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      -+|+||+|.|||-|.++..=++.| ..+|++|+++.+........+.        ..+  .+.+..-.-.++.+..+++|
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~--------~~~--~i~~~~~~~~~~dl~~~~lv   76 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWA--------DAG--MLTLVEGPFDESLLDTCWLA   76 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHH--------hCC--CEEEEeCCCChHHhCCCEEE
Confidence            479999999999999998877777 5799999999887654433221        111  11121111123557889988


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +.++...+     +|++.....+...+++|++
T Consensus        77 ~~at~d~~-----~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         77 IAATDDDA-----VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             EECCCCHH-----HhHHHHHHHHHcCcEEEEC
Confidence            88876322     4455555555545566653

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.18  E-value=0.028  Score=50.98  Aligned_cols=74  Identities=20%  Similarity=0.295  Sum_probs=45.4

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+|+|+| +|.||+.+++.+...-++++.+ +|+........   ..+. +  .+..+.+.....+++++...+|+|+.+
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~---~~~~-~--~~~~~~gv~~~~d~~~l~~~~DvVIdf   75 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGT---DAGE-L--AGIGKVGVPVTDDLEAVETDPDVLIDF   75 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCC---CHHH-h--cCcCcCCceeeCCHHHhcCCCCEEEEC
Confidence            3799999 6999999999875456888765 67432211000   0000 0  011112233457888886679999999


Q ss_pred             cC
Q 022672          152 PV  153 (294)
Q Consensus       152 ~P  153 (294)
                      .|
T Consensus        76 T~   77 (266)
T TIGR00036        76 TT   77 (266)
T ss_pred             CC
Confidence            86

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=96.17  E-value=0.11  Score=48.68  Aligned_cols=143  Identities=15%  Similarity=0.122  Sum_probs=81.4

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY   88 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~v   88 (294)
                      +.++..+|+|-|.-+....++-  +|+=++.+.++                    +.+..+.|++|++||-+  ++.+++
T Consensus       116 ~~a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~--------------------~g~~~l~g~~ia~vGD~~~~v~~Sl  173 (336)
T PRK03515        116 TLAEYAGVPVWNGLTNEFHPTQ--LLADLLTMQEH--------------------LPGKAFNEMTLAYAGDARNNMGNSL  173 (336)
T ss_pred             HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH--------------------hCCCCcCCCEEEEeCCCcCcHHHHH
Confidence            4556678999998654433332  22222222221                    00124789999999976  688999


Q ss_pred             HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC--CC-----------
Q 022672           89 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV--LD-----------  155 (294)
Q Consensus        89 A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P--lt-----------  155 (294)
                      +..+ ..||+++....|..-...+.+.+..-......+   ..+....++++.++++|+|..-.=  ..           
T Consensus       174 ~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~i~~~~d~~ea~~~aDvvytd~W~sm~~~~~~~~er~~  249 (336)
T PRK03515        174 LEAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKNG---GNITLTEDIAEGVKGADFIYTDVWVSMGEPKEVWAERIA  249 (336)
T ss_pred             HHHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEecCcccCcchhHHHHHHHH
Confidence            8876 589999998877532111111111000011111   223445789999999999977420  00           


Q ss_pred             ccccccccHHHHhcC-CCCcEEEEc
Q 022672          156 KTTYHLINKERLATM-KKEAILVNC  179 (294)
Q Consensus       156 ~~t~~li~~~~l~~m-k~gailIN~  179 (294)
                      ......++++.++.. |++++|..+
T Consensus       250 ~~~~y~v~~~lm~~a~k~~~ivmHc  274 (336)
T PRK03515        250 LLRPYQVNSKMMQLTGNPQVKFLHC  274 (336)
T ss_pred             hccCCccCHHHHhcccCCCCEEECC
Confidence            001233566677663 677777776

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.15  E-value=0.024  Score=55.03  Aligned_cols=132  Identities=20%  Similarity=0.230  Sum_probs=76.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ..+|+|.|+|+|.-|.++|+.| ...|++|+++|.++.........     ...   ..+....-....+.+.++|+|+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~~~-----~~~---~~i~~~~g~~~~~~~~~~d~vV~   75 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAAQP-----LLL---EGIEVELGSHDDEDLAEFDLVVK   75 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhhhh-----hhc---cCceeecCccchhccccCCEEEE
Confidence            4499999999999999999998 68999999999766541000000     000   01111100111266788999988


Q ss_pred             ccCCCcccc----------ccccH-HHHhcC-CCC-cEEEEcCCCcccCHHHHHHHHHc--------CCcceEEeeCCCC
Q 022672          151 HPVLDKTTY----------HLINK-ERLATM-KKE-AILVNCSRGPVIDEVALVEHLKQ--------NPMFRVGLDVFED  209 (294)
Q Consensus       151 ~~Plt~~t~----------~li~~-~~l~~m-k~g-ailIN~aRG~~vd~~aL~~aL~~--------g~i~ga~lDV~~~  209 (294)
                      ..--...+.          .++.+ +.+-+. .+- .+-|--+.|+.-.+.-+...|++        |.|+..++|+.++
T Consensus        76 SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~  155 (448)
T COG0771          76 SPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQ  155 (448)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcc
Confidence            754333222          12221 233332 122 44444456776666555555543        4577788999887


Q ss_pred             CC
Q 022672          210 EP  211 (294)
Q Consensus       210 EP  211 (294)
                      ++
T Consensus       156 ~~  157 (448)
T COG0771         156 AE  157 (448)
T ss_pred             cC
Confidence            44

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.15  E-value=0.0084  Score=56.90  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=31.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .++|||||-|..|+.+++.+ +.+|++|+++|+.+..
T Consensus         2 ~~~igilG~Gql~~ml~~aa-~~lG~~v~~~d~~~~~   37 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAA-APLGYKVIVLDPDPDS   37 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence            47899999999999999984 7899999999987644

>PRK06444 prephenate dehydrogenase; Provisional

Probab=96.13  E-value=0.0093  Score=51.71  Aligned_cols=60  Identities=17%  Similarity=0.292  Sum_probs=43.8

Q ss_pred             EEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           75 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        75 tvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      +++|||- |.+|+.+++.+ +..|+.|+                                        +++||+|++|+|
T Consensus         2 ~~~iiG~~G~mG~~~~~~~-~~~g~~v~----------------------------------------~~~~DlVilavP   40 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSIL-DDNGLGVY----------------------------------------IKKADHAFLSVP   40 (197)
T ss_pred             EEEEEecCCcHHHHHHHHH-HhCCCEEE----------------------------------------ECCCCEEEEeCC
Confidence            7999998 99999999997 67787763                                        257999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      - ..+.     +.++.+.  .++++++.-+
T Consensus        41 v-~~~~-----~~i~~~~--~~v~Dv~SvK   62 (197)
T PRK06444         41 I-DAAL-----NYIESYD--NNFVEISSVK   62 (197)
T ss_pred             H-HHHH-----HHHHHhC--CeEEeccccC
Confidence            3 2333     3333333  3788987544

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=96.11  E-value=0.11  Score=49.63  Aligned_cols=195  Identities=18%  Similarity=0.128  Sum_probs=112.9

Q ss_pred             CCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhc
Q 022672           16 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG   95 (294)
Q Consensus        16 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~   95 (294)
                      ..|+|.|.--   .-+|=.+++-+|+.+|-                     .|+.|+..+|.+.|.|.-|-.+++.| .+
T Consensus       166 ~~IPvFhDDq---qGTaiv~lA~llnalk~---------------------~gk~l~d~kiv~~GAGAAgiaia~~l-~~  220 (432)
T COG0281         166 MNIPVFHDDQ---QGTAIVTLAALLNALKL---------------------TGKKLKDQKIVINGAGAAGIAIADLL-VA  220 (432)
T ss_pred             CCCCcccccc---cHHHHHHHHHHHHHHHH---------------------hCCCccceEEEEeCCcHHHHHHHHHH-HH
Confidence            3455555422   23566677777777762                     35679999999999999999999997 67


Q ss_pred             CCC---EEEEEcCCchhHHHHHHh-hhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCC
Q 022672           96 FKM---NLIYYDLYQATRLEKFVT-AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  171 (294)
Q Consensus        96 ~g~---~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk  171 (294)
                      .|+   +|+.+|+..--.... .+ ..+++.........+  .... ++.+..+|+++-+--     .+.+.++.++.|.
T Consensus       221 ~g~~~~~i~~~D~~G~l~~~r-~~~~~~~~k~~~a~~~~~--~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~~Ma  291 (432)
T COG0281         221 AGVKEENIFVVDRKGLLYDGR-EDLTMNQKKYAKAIEDTG--ERTL-DLALAGADVLIGVSG-----VGAFTEEMVKEMA  291 (432)
T ss_pred             hCCCcccEEEEecCCcccCCC-cccccchHHHHHHHhhhc--cccc-cccccCCCEEEEcCC-----CCCcCHHHHHHhc
Confidence            887   689999763210000 00 000000000000000  0011 447889998876642     3999999999999


Q ss_pred             CCcEEEEcCCCcccCHHHHHHHHHcC-CcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCc-----HHHHHHHHHHHH
Q 022672          172 KEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS-----KWTREGMATLAA  245 (294)
Q Consensus       172 ~gailIN~aRG~~vd~~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t-----~~~~~~~~~~~~  245 (294)
                      ++.++.=.|....--....+.+-..| .|.+-      .-|.  .|- +..|+++-|.|.-..     ..-.+.|...++
T Consensus       292 ~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaT------Grsd--~Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa  362 (432)
T COG0281         292 KHPIIFALANPTPEITPEDAKEWGDGAAIVAT------GRSD--YPN-QVNNVLIFPGIFRGALDVRAKTITDEMKIAAA  362 (432)
T ss_pred             cCCEEeecCCCCccCCHHHHhhcCCCCEEEEe------CCCC--Ccc-cccceeEcchhhhhhHhhccccCCHHHHHHHH
Confidence            99999988876642222222222222 23222      2222  122 789999999986321     112244555566


Q ss_pred             HHHHHHHc
Q 022672          246 LNVLGKIK  253 (294)
Q Consensus       246 ~nl~~~~~  253 (294)
                      +-|..+..
T Consensus       363 ~AiA~~~~  370 (432)
T COG0281         363 EAIADLAR  370 (432)
T ss_pred             HHHHhhcc
Confidence            66666543

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.10  E-value=0.24  Score=51.27  Aligned_cols=165  Identities=21%  Similarity=0.278  Sum_probs=106.4

Q ss_pred             CCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhc
Q 022672           16 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG   95 (294)
Q Consensus        16 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~   95 (294)
                      ..|+|.|. +.  +-+|=-+++-+++.+|-                     .|+.+.+.+|.|.|.|.-|-.+|+.| ..
T Consensus       152 ~~ip~f~D-D~--~GTa~v~lA~l~na~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~  206 (752)
T PRK07232        152 MDIPVFHD-DQ--HGTAIISAAALLNALEL---------------------VGKKIEDVKIVVSGAGAAAIACLNLL-VA  206 (752)
T ss_pred             cCCCeecc-cc--chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECccHHHHHHHHHH-HH
Confidence            35777776 32  23455667777777762                     24578899999999999999999987 46


Q ss_pred             CCC---EEEEEcCCchh---H---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHH
Q 022672           96 FKM---NLIYYDLYQAT---R---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  166 (294)
Q Consensus        96 ~g~---~V~~~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~  166 (294)
                      .|.   +++.+|+..--   +   .......+    ...       ....+|+|+++.+|+++=+-     +.+.++++.
T Consensus       207 ~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~----a~~-------~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~  270 (752)
T PRK07232        207 LGAKKENIIVCDSKGVIYKGRTEGMDEWKAAY----AVD-------TDARTLAEAIEGADVFLGLS-----AAGVLTPEM  270 (752)
T ss_pred             cCCCcccEEEEcCCCeecCCCcccccHHHHHH----hcc-------CCCCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence            777   78989865210   0   11111111    110       12258999999999876542     258999999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCC
Q 022672          167 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  230 (294)
Q Consensus       167 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia  230 (294)
                      ++.|.+..++.=.|....--..+.......|.|.+.+   -...|      =+..|+++-|-++
T Consensus       271 v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atG---rs~~p------nQ~NN~~~FPgi~  325 (752)
T PRK07232        271 VKSMADNPIIFALANPDPEITPEEAKAVRPDAIIATG---RSDYP------NQVNNVLCFPYIF  325 (752)
T ss_pred             HHHhccCCEEEecCCCCccCCHHHHHHhcCCEEEEEC---CcCCC------Ccccceeecchhh
Confidence            9999999999999988763222222222333454444   11112      3567888888765

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.09  E-value=0.029  Score=52.84  Aligned_cols=95  Identities=17%  Similarity=0.289  Sum_probs=54.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcC-CCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ++|+|+|. |.+|+.+++.|. .. +.++.. ++++.... ..+.+.+. ++.  +.....+. ..+.++++.++|+|++
T Consensus         1 ~kVaIiGATG~vG~ellr~L~-~hP~~el~~l~~s~~sag-k~~~~~~~-~l~--~~~~~~~~-~~~~~~~~~~~DvVf~   74 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLL-NHPEVEITYLVSSRESAG-KPVSEVHP-HLR--GLVDLNLE-PIDEEEIAEDADVVFL   74 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHH-cCCCceEEEEeccchhcC-CChHHhCc-ccc--ccCCceee-cCCHHHhhcCCCEEEE
Confidence            47999998 999999999984 55 778774 46443211 00000010 000  00011111 1255677678999999


Q ss_pred             ccCCCccccccccHHHHhc-CCCCcEEEEcC
Q 022672          151 HPVLDKTTYHLINKERLAT-MKKEAILVNCS  180 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~-mk~gailIN~a  180 (294)
                      |+|. ...     ++.... .+.|..+|+.|
T Consensus        75 alP~-~~s-----~~~~~~~~~~G~~VIDlS   99 (346)
T TIGR01850        75 ALPH-GVS-----AELAPELLAAGVKVIDLS   99 (346)
T ss_pred             CCCc-hHH-----HHHHHHHHhCCCEEEeCC
Confidence            9993 222     333322 25688899987

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.08  E-value=0.026  Score=49.88  Aligned_cols=94  Identities=11%  Similarity=0.045  Sum_probs=58.6

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCCE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADV  147 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDi  147 (294)
                      -.+.|++|.|||-|.++..=++.| ..+|++|+++.|........+..        .+  .+.+.. ..+. +-+..+++
T Consensus        21 l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~l~~--------~~--~i~~~~r~~~~-~dl~g~~L   88 (223)
T PRK05562         21 LLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLDLKK--------YG--NLKLIKGNYDK-EFIKDKHL   88 (223)
T ss_pred             EECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHHHHh--------CC--CEEEEeCCCCh-HHhCCCcE
Confidence            467899999999999998877776 57999999999876554333211        11  111111 1122 34578888


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      |+.++.. +    -+|+...+..+...+++|+
T Consensus        89 ViaATdD-~----~vN~~I~~~a~~~~~lvn~  115 (223)
T PRK05562         89 IVIATDD-E----KLNNKIRKHCDRLYKLYID  115 (223)
T ss_pred             EEECCCC-H----HHHHHHHHHHHHcCCeEEE
Confidence            8888752 2    2445555555544455554

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.08  E-value=0.065  Score=49.35  Aligned_cols=107  Identities=18%  Similarity=0.157  Sum_probs=68.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .|++++|||--.=-..++++| ...|++|+.+.-.....                 ...+.....+.+++++++|+|++-
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l-~~~G~~v~~~g~~~~~~-----------------~~~g~~~~~~~~~~~~~ad~ii~~   62 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKL-VELGAKVSLVGFDQLDH-----------------GFTGATKSSSLEEALSDVDVIILP   62 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHH-HHCCCEEEEEecccccc-----------------ccCCceeeccHHHHhccCCEEEEC
Confidence            378999999988888999998 57899887643211100                 011223345678899999999999


Q ss_pred             cCCCcccc---c-------cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 022672          152 PVLDKTTY---H-------LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  201 (294)
Q Consensus       152 ~Plt~~t~---~-------li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g  201 (294)
                      +|.+.+..   .       -++.+.++.|+++..++ ++.+.   .. +-+.+++.++..
T Consensus        63 ~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~~  117 (296)
T PRK08306         63 VPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRKL  117 (296)
T ss_pred             CccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCeE
Confidence            88654321   1       13578999999998544 34332   22 334555556543

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.06  E-value=0.024  Score=49.69  Aligned_cols=98  Identities=22%  Similarity=0.270  Sum_probs=56.6

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-H----------HHhhhhhhhhhcCCCCcccc-
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-K----------FVTAYGQFLKANGEQPVTWK-  133 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~----------~~~~~~~~~~~~~~~~~~~~-  133 (294)
                      ..|..++|+|||+|.+|..+|+.|+ ..|. ++..+|...-..  .. .          -.+...+.+.... ...... 
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln-p~v~v~~  101 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN-PFVEIEA  101 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC-CCCEEEE
Confidence            3589999999999999999999985 5676 588888662100  00 0          0000001111111 111110 


Q ss_pred             -----ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhc
Q 022672          134 -----RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  169 (294)
Q Consensus       134 -----~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~  169 (294)
                           ...+++++++++|+|+.|+- +.+++..+++...+.
T Consensus       102 ~~~~i~~~~~~~~~~~~DvVI~a~D-~~~~r~~l~~~~~~~  141 (212)
T PRK08644        102 HNEKIDEDNIEELFKDCDIVVEAFD-NAETKAMLVETVLEH  141 (212)
T ss_pred             EeeecCHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHHh
Confidence                 11235578889999998864 556666666554443

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=96.02  E-value=0.15  Score=47.86  Aligned_cols=143  Identities=17%  Similarity=0.151  Sum_probs=82.9

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY   88 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~v   88 (294)
                      +.++...|+|-|.-+....++-  +|+=++.+.+++                    .| .+.|++|++||-+  ++.++.
T Consensus       116 ~~a~~s~vPVINa~~~~~HPtQ--aL~Dl~Ti~e~~--------------------~g-~l~g~kia~vGD~~~~v~~Sl  172 (332)
T PRK04284        116 TLAEYSGVPVWNGLTDEDHPTQ--VLADFLTAKEHL--------------------KK-PYKDIKFTYVGDGRNNVANAL  172 (332)
T ss_pred             HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHHh--------------------cC-CcCCcEEEEecCCCcchHHHH
Confidence            4556678999998655444432  222223332210                    12 3789999999975  788898


Q ss_pred             HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC--CCc----------
Q 022672           89 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV--LDK----------  156 (294)
Q Consensus        89 A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P--lt~----------  156 (294)
                      +..+ ..||++|....|..-...+.+.+.........+   ..+....++++.++++|+|..-.=  ...          
T Consensus       173 ~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~  248 (332)
T PRK04284        173 MQGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAETG---GKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIK  248 (332)
T ss_pred             HHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHH
Confidence            8876 589999998887532111111110000001111   123345789999999999977420  000          


Q ss_pred             -cccccccHHHHhcCC-CCcEEEEcC
Q 022672          157 -TTYHLINKERLATMK-KEAILVNCS  180 (294)
Q Consensus       157 -~t~~li~~~~l~~mk-~gailIN~a  180 (294)
                       -....++++.++.++ |+++|..+.
T Consensus       249 ~~~~y~v~~e~l~~a~~~~~ivmHpl  274 (332)
T PRK04284        249 LLKPYQVNKEMMKKTGNPNAIFEHCL  274 (332)
T ss_pred             hccCCcCCHHHHhhcCCCCcEEECCC
Confidence             012346778888775 588888773

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.01  E-value=0.034  Score=53.01  Aligned_cols=107  Identities=20%  Similarity=0.318  Sum_probs=68.9

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHH-------HHHH---hhhhhhhhhcCCCCccccccCC
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL-------EKFV---TAYGQFLKANGEQPVTWKRASS  137 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~  137 (294)
                      +..+.|+||.|=|+|++|+.+|+.| ...|.+|++.|-+.....       +.+.   +..++....     .+......
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~-----~ga~~i~~  275 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEY-----AGAEYITN  275 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhh-----cCceEccc
Confidence            3459999999999999999999997 577999999876654100       0000   000000000     01112222


Q ss_pred             HHHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCH
Q 022672          138 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       138 l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~  187 (294)
                       ++++ .+||+++=|     .+.+.|+.+....++-. +++-.+.|.+-.+
T Consensus       276 -~e~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t~e  319 (411)
T COG0334         276 -EELLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTTPE  319 (411)
T ss_pred             -cccccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCCHH
Confidence             4444 478887655     46888988888888877 7888888887643

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.99  E-value=0.017  Score=54.29  Aligned_cols=97  Identities=22%  Similarity=0.239  Sum_probs=59.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH-------------HH---HHHhhhhhhhhhcCCCCcc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR-------------LE---KFVTAYGQFLKANGEQPVT  131 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~  131 (294)
                      ..|..++|.|||+|.+|..+|+.|+ ..|. ++..+|...-..             ..   .-.....+.+.... ..+.
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in-p~v~   97 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN-SDVR   97 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC-CCcE
Confidence            4689999999999999999999985 6787 788888752100             00   00000001111111 1111


Q ss_pred             cc------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHh
Q 022672          132 WK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLA  168 (294)
Q Consensus       132 ~~------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~  168 (294)
                      ..      ...+++++++++|+|+.|.- +.+++.++++...+
T Consensus        98 v~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~  139 (339)
T PRK07688         98 VEAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQK  139 (339)
T ss_pred             EEEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence            10      12345678899999988875 56778777766554

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.98  E-value=0.021  Score=55.26  Aligned_cols=74  Identities=15%  Similarity=0.190  Sum_probs=47.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~l~~  152 (294)
                      ++|.|+|+|.+|+.+|+.| ...|.+|+++|+++... +.+....+.... .+    .......++++ +.++|.|++++
T Consensus         1 m~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~-~~~~~~~~~~~~-~g----d~~~~~~l~~~~~~~a~~vi~~~   73 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERL-RRLQDRLDVRTV-VG----NGSSPDVLREAGAEDADLLIAVT   73 (453)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHH-HHHHhhcCEEEE-Ee----CCCCHHHHHHcCCCcCCEEEEec
Confidence            4799999999999999998 67899999999876542 221110000000 00    00112345555 78999999999


Q ss_pred             CC
Q 022672          153 VL  154 (294)
Q Consensus       153 Pl  154 (294)
                      +.
T Consensus        74 ~~   75 (453)
T PRK09496         74 DS   75 (453)
T ss_pred             CC
Confidence            84

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.97  E-value=0.023  Score=49.20  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=32.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCC
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  106 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~  106 (294)
                      ..|.+++|.|+|+|.+|..+++.|+ ..|+ ++..+|..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d   54 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDR   54 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECC
Confidence            4699999999999999999999985 6777 57888865

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02527 aspartate carbamoyltransferase

Probab=95.96  E-value=0.075  Score=49.24  Aligned_cols=102  Identities=19%  Similarity=0.348  Sum_probs=64.0

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           70 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        70 ~l~gktvGIIGlG---~IG~~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      .+.|++|++||-+   ++.++++..+ ..+ |++|....|..-.....+.+.    +...+   ..+....++++.++++
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~~a~~~a  219 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKDY----LTSKG---VEWEESSDLMEVASKC  219 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHHH----HHHcC---CEEEEEcCHHHHhCCC
Confidence            4889999999976   6889988876 456 999988877432111111111    11111   2234457899999999


Q ss_pred             CEEEEccCCCc------c------ccccccHHHHhcCCCCcEEEEc
Q 022672          146 DVISLHPVLDK------T------TYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       146 DiV~l~~Plt~------~------t~~li~~~~l~~mk~gailIN~  179 (294)
                      |+|....--.+      +      ....++++.++..+++++|..+
T Consensus       220 Dvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc  265 (306)
T PLN02527        220 DVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP  265 (306)
T ss_pred             CEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence            99977432100      0      1244566777777777777766

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.95  E-value=0.019  Score=54.79  Aligned_cols=107  Identities=14%  Similarity=0.206  Sum_probs=62.0

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHH-HHhhcCCEE
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVLREADVI  148 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell~~aDiV  148 (294)
                      -.-++|+|+|. |.+|+.+.+.|...-.+++..+.+..... ..+...+ .++..   ...  ....+++ +.++++|+|
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG-~~i~~~~-~~l~~---~~~--~~~~~~~~~~~~~~DvV  108 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG-QSFGSVF-PHLIT---QDL--PNLVAVKDADFSDVDAV  108 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC-CCchhhC-ccccC---ccc--cceecCCHHHhcCCCEE
Confidence            35568999998 99999999998533377887775533211 0000000 00000   011  1112222 224889999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL  190 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL  190 (294)
                      ++++|. .     ...+....|+.|..+|+.|-.--.+.++.
T Consensus       109 f~Alp~-~-----~s~~i~~~~~~g~~VIDlSs~fRl~~~~~  144 (381)
T PLN02968        109 FCCLPH-G-----TTQEIIKALPKDLKIVDLSADFRLRDIAE  144 (381)
T ss_pred             EEcCCH-H-----HHHHHHHHHhCCCEEEEcCchhccCCccc
Confidence            999994 2     23445555667899999986555555433

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.95  E-value=0.022  Score=56.08  Aligned_cols=114  Identities=21%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+.|++|.|+|+|.+|.+.++.| +..|++|+++|..... .+.+        ...+   ..........+.++++|+|+
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~l--------~~~g---~~~~~~~~~~~~l~~~D~VV   75 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRPH--------AERG---VATVSTSDAVQQIADYALVV   75 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHH--------HhCC---CEEEcCcchHhHhhcCCEEE
Confidence            35789999999999999999886 7899999999965432 1111        1111   11111112345567899888


Q ss_pred             EccCCCcccc----------ccccHHHHh-cC-------CC-CcEEEEcCCCcccCHHHHHHHHHc
Q 022672          150 LHPVLDKTTY----------HLINKERLA-TM-------KK-EAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       150 l~~Plt~~t~----------~li~~~~l~-~m-------k~-gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ....-.+...          .++++-.+. .+       ++ ..+=|--+-|+.--..-+.+.|+.
T Consensus        76 ~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~  141 (488)
T PRK03369         76 TSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA  141 (488)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            7764333211          122222221 11       12 234455567887766666677764

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.94  E-value=0.066  Score=49.85  Aligned_cols=96  Identities=17%  Similarity=0.189  Sum_probs=59.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---cCC
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EAD  146 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aD  146 (294)
                      ..|++|.|+|.|.+|...++. ++..|+ +|++.+++.... +. ..       ..+....-.....+++++..   ..|
T Consensus       168 ~~g~~VlV~G~G~vG~~aiql-ak~~G~~~Vi~~~~~~~~~-~~-a~-------~lGa~~vi~~~~~~~~~~~~~~g~~D  237 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAA-VKTLGAAEIVCADVSPRSL-SL-AR-------EMGADKLVNPQNDDLDHYKAEKGYFD  237 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHH-HHHcCCcEEEEEeCCHHHH-HH-HH-------HcCCcEEecCCcccHHHHhccCCCCC
Confidence            358999999999999999987 478998 588888765432 21 11       11111110001123444432   268


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +++-+... +.+    -...++.++++..+|.++.
T Consensus       238 ~vid~~G~-~~~----~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        238 VSFEVSGH-PSS----INTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             EEEECCCC-HHH----HHHHHHHhhcCCEEEEEcc
Confidence            88887752 221    1456778889988888864

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.93  E-value=0.039  Score=53.05  Aligned_cols=89  Identities=19%  Similarity=0.252  Sum_probs=61.2

Q ss_pred             ccCCCEEEEEcC----------ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHH
Q 022672           70 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  139 (294)
Q Consensus        70 ~l~gktvGIIGl----------G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  139 (294)
                      .+.|++|+|+|+          ..-...+++.| ...|++|.+|||........   .              .....+++
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~---~--------------~~~~~~~~  371 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK---G--------------LPLIDDLE  371 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh---h--------------cccCCCHH
Confidence            589999999998          44677889987 68899999999986432110   0              01136888


Q ss_pred             HHhhcCCEEEEccCCCccccccccHHHH-hcCCCCcEEEEc
Q 022672          140 EVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNC  179 (294)
Q Consensus       140 ell~~aDiV~l~~Plt~~t~~li~~~~l-~~mk~gailIN~  179 (294)
                      +.++++|.|+++.+- ++-+. ++-+.+ ..|+ ..+++++
T Consensus       372 ~~~~~ad~~v~~t~~-~~~~~-~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       372 EALKGADALVILTDH-DEFKD-LDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             HHHhCCCEEEEecCC-HHHhc-cCHHHHHHhcC-CCEEEeC
Confidence            999999999999873 33222 344444 3454 4577774

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=95.91  E-value=0.17  Score=47.41  Aligned_cols=144  Identities=13%  Similarity=0.093  Sum_probs=83.9

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY   88 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~v   88 (294)
                      +.++..+|+|-|.-+....++-  +|+=++.+.++               |     .|..+.|++|++||-+  ++.+++
T Consensus       116 ~~a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~---------------~-----g~~~l~gl~va~vGD~~~~v~~S~  173 (334)
T PRK12562        116 TLAEYAGVPVWNGLTNEFHPTQ--LLADLLTMQEH---------------L-----PGKAFNEMTLVYAGDARNNMGNSM  173 (334)
T ss_pred             HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH---------------h-----CCCCcCCcEEEEECCCCCCHHHHH
Confidence            4566678999998665444432  22222222221               1     0124789999999975  788998


Q ss_pred             HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc------CCC--cc---
Q 022672           89 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP------VLD--KT---  157 (294)
Q Consensus        89 A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~------Plt--~~---  157 (294)
                      +..+ ..+|++|....|..-...+.+.+.........+   ..+....++++.++++|+|..-.      ...  ++   
T Consensus       174 ~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~  249 (334)
T PRK12562        174 LEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHG---GKITLTEDIAAGVKGADFIYTDVWVSMGEPKEKWAERIA  249 (334)
T ss_pred             HHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEEcCccccccchhhHHHHHH
Confidence            8876 579999998877532111111111100011111   12334578999999999997653      100  00   


Q ss_pred             --ccccccHHHHhcC-CCCcEEEEcC
Q 022672          158 --TYHLINKERLATM-KKEAILVNCS  180 (294)
Q Consensus       158 --t~~li~~~~l~~m-k~gailIN~a  180 (294)
                        -..-++++.++.. |++++|..+.
T Consensus       250 ~~~~y~v~~ell~~a~~~~~i~mHcL  275 (334)
T PRK12562        250 LLRGYQVNSKMMALTGNPQVKFLHCL  275 (334)
T ss_pred             hccCCcCCHHHHHhhcCCCCEEECCC
Confidence              1233677888775 7888888874

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.87  E-value=0.034  Score=51.38  Aligned_cols=106  Identities=20%  Similarity=0.255  Sum_probs=60.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ++|+|||.|.+|+.+|..|+ ..|  .++..+|+...... .............. ..... ...+.+ .+++||+|+++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~-~~g~~~ei~l~D~~~~~~~-~~a~dL~~~~~~~~-~~~~i-~~~~~~-~l~~aDIVIit   75 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLV-NQGIADELVLIDINEEKAE-GEALDLEDALAFLP-SPVKI-KAGDYS-DCKDADIVVIT   75 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCcchhh-HhHhhHHHHhhccC-CCeEE-EcCCHH-HhCCCCEEEEc
Confidence            47999999999999999874 556  48999998765422 21111111000001 11111 123444 47899999999


Q ss_pred             cCCCcccccc-----c--c-------HHHHhcCCCCcEEEEcCCCcccCH
Q 022672          152 PVLDKTTYHL-----I--N-------KERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       152 ~Plt~~t~~l-----i--~-------~~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      .... ...++     +  |       .+.+....|.+++|+++  ..+|.
T Consensus        76 ag~~-~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~  122 (306)
T cd05291          76 AGAP-QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDV  122 (306)
T ss_pred             cCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHH
Confidence            8742 21111     1  1       12334456788999986  44443

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.86  E-value=0.045  Score=42.51  Aligned_cols=89  Identities=19%  Similarity=0.255  Sum_probs=52.1

Q ss_pred             EEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH----HhhcCCEEEEc
Q 022672           76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREADVISLH  151 (294)
Q Consensus        76 vGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~aDiV~l~  151 (294)
                      |-|+|+|.+|+.+++.| +..+.+|++.|..+... +...+        .+ ...-.-...+.+.    -++++|.|+++
T Consensus         1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~~-~~~~~--------~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPERV-EELRE--------EG-VEVIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHHH-HHHHH--------TT-SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHHH-HHHHh--------cc-cccccccchhhhHHhhcCccccCEEEEc
Confidence            56999999999999998 56777999999886542 22111        11 1110111122222    24789999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEE
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILV  177 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailI  177 (294)
                      .+..  ...+.-...++.+.+...+|
T Consensus        70 ~~~d--~~n~~~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   70 TDDD--EENLLIALLARELNPDIRII   93 (116)
T ss_dssp             SSSH--HHHHHHHHHHHHHTTTSEEE
T ss_pred             cCCH--HHHHHHHHHHHHHCCCCeEE
Confidence            8833  34433345555555555555

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.85  E-value=0.056  Score=49.87  Aligned_cols=91  Identities=11%  Similarity=0.100  Sum_probs=54.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhh-----cC
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLR-----EA  145 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-----~a  145 (294)
                      ..++||||.|.||+.....+.+.-++++. .+|+.+......+..       .     .++. ...+++++++     +.
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~-------~-----~Gi~~~~~~ie~LL~~~~~~dI   71 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARAR-------R-----LGVATSAEGIDGLLAMPEFDDI   71 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHH-------H-----cCCCcccCCHHHHHhCcCCCCC
Confidence            35799999999999977666444467765 466655422111111       1     1122 2367888884     58


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      |+|+.+.|.  ..+.   +-.....+.|..+|+-+
T Consensus        72 DiVf~AT~a--~~H~---e~a~~a~eaGk~VID~s  101 (302)
T PRK08300         72 DIVFDATSA--GAHV---RHAAKLREAGIRAIDLT  101 (302)
T ss_pred             CEEEECCCH--HHHH---HHHHHHHHcCCeEEECC
Confidence            889999983  2221   22223346677777765

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.82  E-value=0.018  Score=46.86  Aligned_cols=86  Identities=23%  Similarity=0.300  Sum_probs=48.9

Q ss_pred             EEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCC
Q 022672           76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  155 (294)
Q Consensus        76 vGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt  155 (294)
                      +-|+|.|.+++++++.+ +.+|++|+++|++++.                                ++.++-+. +.+. 
T Consensus         1 L~I~GaG~va~al~~la-~~lg~~v~v~d~r~e~--------------------------------~~~~~~~~-~~~~-   45 (136)
T PF13478_consen    1 LVIFGAGHVARALARLA-ALLGFRVTVVDPRPER--------------------------------FPEADEVI-CIPP-   45 (136)
T ss_dssp             EEEES-STCHHHHHHHH-HHCTEEEEEEES-CCC---------------------------------TTSSEEE-CSHH-
T ss_pred             CEEEeCcHHHHHHHHHH-HhCCCEEEEEcCCccc--------------------------------cCCCCccE-ecCh-
Confidence            46899999999999984 7999999999986421                                11233322 2221 


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 022672          156 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  204 (294)
Q Consensus       156 ~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~l  204 (294)
                      ++..     +.+ .+.+++.+| ++++.-.|.+.|.++|++ .....++
T Consensus        46 ~~~~-----~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~   86 (136)
T PF13478_consen   46 DDIL-----EDL-EIDPNTAVV-MTHDHELDAEALEAALAS-PARYIGL   86 (136)
T ss_dssp             HHHH-----HHC--S-TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred             HHHH-----hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence            1100     111 355666666 888888899888888877 4444443

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=95.75  E-value=0.13  Score=48.48  Aligned_cols=111  Identities=14%  Similarity=0.064  Sum_probs=66.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcC-CCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+|||||. .+|+.-++.+...- ++++.+ +|+..+. .+++.+.+       +     ...+.++++++.+.|+++++
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~er-A~~~A~~~-------g-----i~~y~~~eell~d~Di~~V~   69 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSER-SRALAHRL-------G-----VPLYCEVEELPDDIDIACVV   69 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHH-HHHHHHHh-------C-----CCccCCHHHHhcCCCEEEEE
Confidence            57999999 68998888774333 578765 6776543 23333322       1     22457999999999999999


Q ss_pred             cCCC-c-cccccccHHHHhcCCCCc-EEEEcCCCcccCHHHHHHHHHcCCcceE
Q 022672          152 PVLD-K-TTYHLINKERLATMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMFRV  202 (294)
Q Consensus       152 ~Plt-~-~t~~li~~~~l~~mk~ga-ilIN~aRG~~vd~~aL~~aL~~g~i~ga  202 (294)
                      +|.+ + .++.   +-..+.|+.|. +|+-- --..-+.++|+++.++..+...
T Consensus        70 ipt~~P~~~H~---e~a~~aL~aGkHVL~EK-Pla~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        70 VRSAIVGGQGS---ALARALLARGIHVLQEH-PLHPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             eCCCCCCccHH---HHHHHHHhCCCeEEEcC-CCCHHHHHHHHHHHHHcCCEEE
Confidence            9842 2 2322   22333445553 33332 1113455667777777666544

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=95.74  E-value=0.018  Score=43.84  Aligned_cols=73  Identities=16%  Similarity=0.120  Sum_probs=43.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEE-EEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l  150 (294)
                      .++.|+|+|+.|++++..+....|+.+ .++|..+...-               ..-.+...+.+++++.+.  .|+.++
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G---------------~~i~gipV~~~~~~l~~~~~i~iaii   68 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG---------------KEIGGIPVYGSMDELEEFIEIDIAII   68 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT---------------SEETTEEEESSHHHHHHHCTTSEEEE
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC---------------cEECCEEeeccHHHhhhhhCCCEEEE
Confidence            479999999999999854433445543 34555443210               001122233477877776  999999


Q ss_pred             ccCCCccccccc
Q 022672          151 HPVLDKTTYHLI  162 (294)
Q Consensus       151 ~~Plt~~t~~li  162 (294)
                      ++|. +.....+
T Consensus        69 ~VP~-~~a~~~~   79 (96)
T PF02629_consen   69 TVPA-EAAQEVA   79 (96)
T ss_dssp             ES-H-HHHHHHH
T ss_pred             EcCH-HHHHHHH
Confidence            9993 3344333

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.70  E-value=0.16  Score=46.44  Aligned_cols=79  Identities=18%  Similarity=0.245  Sum_probs=50.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      ....|+++.|+|.|..+++++..| ...|+ +|++++|+... .+++.+.+..    .+. ........+++.. .++|+
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~r-a~~La~~~~~----~~~-~~~~~~~~~~~~~-~~~dl  193 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRER-AEELADLFGE----LGA-AVEAAALADLEGL-EEADL  193 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhhh----ccc-ccccccccccccc-cccCE
Confidence            356789999999999999999998 57885 79999998754 2333322211    110 0001111222222 26999


Q ss_pred             EEEccCCC
Q 022672          148 ISLHPVLD  155 (294)
Q Consensus       148 V~l~~Plt  155 (294)
                      |+.++|..
T Consensus       194 iINaTp~G  201 (283)
T COG0169         194 LINATPVG  201 (283)
T ss_pred             EEECCCCC
Confidence            99999954

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.70  E-value=0.032  Score=53.01  Aligned_cols=98  Identities=19%  Similarity=0.165  Sum_probs=59.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-H-----------HHhhhhhhhhhcCCCCcccc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-K-----------FVTAYGQFLKANGEQPVTWK  133 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~-----------~~~~~~~~~~~~~~~~~~~~  133 (294)
                      ..|.+++|.|||+|.+|..+++.|+ ..|+ ++..+|...-..  +. .           -.+.....+.... ....+.
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~  114 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ-PDIRVN  114 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC-CCCeeE
Confidence            4699999999999999999999985 6776 788888652100  00 0           0000011111111 111111


Q ss_pred             ------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhc
Q 022672          134 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  169 (294)
Q Consensus       134 ------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~  169 (294)
                            ...+++++++++|+|+.|+- +.+++.++++...+.
T Consensus       115 ~~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~~  155 (370)
T PRK05600        115 ALRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEIT  155 (370)
T ss_pred             EeeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence                  11346678999999988875 577888887665543

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.70  E-value=0.078  Score=49.83  Aligned_cols=121  Identities=20%  Similarity=0.239  Sum_probs=66.0

Q ss_pred             EEEEEcCChHHHHHHHHHhhc---------CCCEEEE-EcCCch-----h-HHHHHHhhhhhhhhhcCCCC-c-cccccC
Q 022672           75 TVGVIGAGRIGSAYARMMVEG---------FKMNLIY-YDLYQA-----T-RLEKFVTAYGQFLKANGEQP-V-TWKRAS  136 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~---------~g~~V~~-~d~~~~-----~-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~  136 (294)
                      +|||+|+|.||+.+++.|.+.         .+++|.+ +|++..     . ..+...+    +....+... . ......
T Consensus         4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~----~~~~~~~~~~~~~~~~~~   79 (341)
T PRK06270          4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALK----VKEETGKLADYPEGGGEI   79 (341)
T ss_pred             EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHH----HHhccCCcccCccccccC
Confidence            699999999999999987422         2677664 464311     0 0111000    000111000 0 001124


Q ss_pred             CHHHHh--hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 022672          137 SMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  199 (294)
Q Consensus       137 ~l~ell--~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~~aL~~g~i  199 (294)
                      ++++++  .+.|+|+.|+|....+...--.-..+.|+.|.-+|-...+.+ ...++|.++.++..+
T Consensus        80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~  145 (341)
T PRK06270         80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV  145 (341)
T ss_pred             CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence            788888  468999999985444322222233566677777776544443 345677777766554

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.69  E-value=0.037  Score=49.54  Aligned_cols=105  Identities=20%  Similarity=0.246  Sum_probs=61.6

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HHH------------HHhhhhhhhhhcCCCCcccc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANGEQPVTWK  133 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~  133 (294)
                      ..|..++|+|||+|.+|..+|+.|+ ..|. ++..+|...-..  ..+            ..+...+.+.... ......
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln-p~v~i~  105 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN-PHIAIE  105 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC-CCCEEE
Confidence            4699999999999999999999985 5666 677777542210  000            0000011111111 111111


Q ss_pred             ----c--cCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          134 ----R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       134 ----~--~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                          .  ..+++++++++|+|+.|+- +.+++..+++...+..+   -+|..
T Consensus       106 ~~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~i---p~v~~  153 (245)
T PRK05690        106 TINARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAAKK---PLVSG  153 (245)
T ss_pred             EEeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCC---EEEEe
Confidence                0  1235678899999999885 56777777766555433   36654

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.68  E-value=0.042  Score=53.87  Aligned_cols=116  Identities=18%  Similarity=0.236  Sum_probs=66.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+.+++|.|+|+|..|+++|+.| ...|++|.++|+..... .+..+       ..+   +....-....+.+.++|+|+
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~-~~~l~-------~~g---i~~~~~~~~~~~~~~~d~vV   79 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNETAR-HKLIE-------VTG---VADISTAEASDQLDSFSLVV   79 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChHHH-HHHHH-------hcC---cEEEeCCCchhHhcCCCEEE
Confidence            57889999999999999999997 68899999999754322 11111       101   11111112234457889887


Q ss_pred             EccCCCccc----------cccccHHHHhc-------C-CC-CcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          150 LHPVLDKTT----------YHLINKERLAT-------M-KK-EAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       150 l~~Plt~~t----------~~li~~~~l~~-------m-k~-gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      ...--.+..          ..++.+-.+..       + ++ ..+-|--+-|+.--..-|.+.|+..
T Consensus        80 ~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~  146 (473)
T PRK00141         80 TSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG  146 (473)
T ss_pred             eCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            764221211          12222222321       1 12 2444555678877777777777653

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.68  E-value=0.033  Score=54.88  Aligned_cols=37  Identities=32%  Similarity=0.308  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      ++.+++|.|+|+|..|.++|+.| ...|.+|.++|...
T Consensus         4 ~~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~   40 (498)
T PRK02006          4 DLQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTRE   40 (498)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCC
Confidence            35688999999999999999987 68999999999754

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.68  E-value=0.08  Score=51.19  Aligned_cols=102  Identities=13%  Similarity=0.219  Sum_probs=64.1

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           70 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        70 ~l~gktvGIIGlG---~IG~~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      .+.|++|++||-+   ++.++++..+ ..+ |++|....|..-...+.+.+.    +...   ...+....++++.++++
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~~---G~~v~~~~d~~eav~~A  309 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISRN---GHVIEQTDDLAAGLRGA  309 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHhc---CCeEEEEcCHHHHhCCC
Confidence            4889999999994   8899998876 455 999998877542211222211    1111   12234457999999999


Q ss_pred             CEEEEccCCCcc----------ccccccHHHHhc-CCCCcEEEEc
Q 022672          146 DVISLHPVLDKT----------TYHLINKERLAT-MKKEAILVNC  179 (294)
Q Consensus       146 DiV~l~~Plt~~----------t~~li~~~~l~~-mk~gailIN~  179 (294)
                      |+|....--.+.          ....++++.++. .|++++|..+
T Consensus       310 DVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc  354 (429)
T PRK11891        310 DVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP  354 (429)
T ss_pred             CEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence            999874421110          113356666666 6777776665

>PRK12861 malic enzyme; Reviewed

Probab=95.67  E-value=0.52  Score=48.86  Aligned_cols=185  Identities=18%  Similarity=0.201  Sum_probs=113.9

Q ss_pred             CcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcC
Q 022672           17 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF   96 (294)
Q Consensus        17 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~   96 (294)
                      .|++.|. +.  +-+|=-+++-+|+.+|-                     .|+.+.+.+|.|.|.|.-|..+|+.| ...
T Consensus       157 ~ipvf~D-D~--qGTa~v~lA~llnal~~---------------------~gk~l~d~~iv~~GAGaAg~~ia~~l-~~~  211 (764)
T PRK12861        157 KIPVFHD-DQ--HGTAITVSAAFINGLKV---------------------VGKSIKEVKVVTSGAGAAALACLDLL-VDL  211 (764)
T ss_pred             CCCeecc-cc--chHHHHHHHHHHHHHHH---------------------hCCChhHcEEEEECHhHHHHHHHHHH-HHc
Confidence            6888887 33  23455677777777762                     24578899999999999999999987 567


Q ss_pred             CC---EEEEEcCCch---hH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHH
Q 022672           97 KM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  167 (294)
Q Consensus        97 g~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l  167 (294)
                      |.   +++.+|+..-   .+   ...+...|    ...       ....+|.|+++.+|+++=+ .    +.+.++++.+
T Consensus       212 G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~----a~~-------~~~~~L~eai~~advliG~-S----~~g~ft~e~v  275 (764)
T PRK12861        212 GLPVENIWVTDIEGVVYRGRTTLMDPDKERF----AQE-------TDARTLAEVIGGADVFLGL-S----AGGVLKAEML  275 (764)
T ss_pred             CCChhhEEEEcCCCeeeCCCcccCCHHHHHH----Hhh-------cCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHH
Confidence            87   7899995421   00   11111111    111       1125899999999987544 2    2589999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-cceEEeeCCCCCCCCCCCccCCCCeEEccCCCCC-----cHHHHHHHH
Q 022672          168 ATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASA-----SKWTREGMA  241 (294)
Q Consensus       168 ~~mk~gailIN~aRG~~vd~~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~-----t~~~~~~~~  241 (294)
                      +.|.+..++.=.|....--..+.... ..|+ |.+-+   -...|      =+..|+++-|-++-.     ...-.+.|.
T Consensus       276 ~~Ma~~PIIFaLsNPtpE~~pe~a~~-~~g~aivaTG---rs~~p------nQ~NN~l~FPgi~~Gal~~~a~~I~~~M~  345 (764)
T PRK12861        276 KAMAARPLILALANPTPEIFPELAHA-TRDDVVIATG---RSDYP------NQVNNVLCFPYIFRGALDVGATTITREME  345 (764)
T ss_pred             HHhccCCEEEECCCCCccCCHHHHHh-cCCCEEEEeC---CcCCC------CccceeeecchhhHHHHHcCCccCCHHHH
Confidence            99999999999998775222222222 2334 32221   01111      356899999976521     111224455


Q ss_pred             HHHHHHHHHHH
Q 022672          242 TLAALNVLGKI  252 (294)
Q Consensus       242 ~~~~~nl~~~~  252 (294)
                      ..+++-|..+.
T Consensus       346 ~aAa~alA~~~  356 (764)
T PRK12861        346 IAAVHAIAGLA  356 (764)
T ss_pred             HHHHHHHHhhC
Confidence            45555555544

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.65  E-value=0.12  Score=47.30  Aligned_cols=80  Identities=24%  Similarity=0.277  Sum_probs=49.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.+|++.|+|.|..|++++-.|+ ..|+ +++.++|+..+. +...+.+..   ..+..........++++.+..+|+|
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~-~~g~~~i~i~nR~~~ka-~~La~~~~~---~~~~~~~~~~~~~~~~~~~~~~div  198 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALV-THGVQKLQVADLDTSRA-QALADVINN---AVGREAVVGVDARGIEDVIAAADGV  198 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHHHhh---ccCcceEEecCHhHHHHHHhhcCEE
Confidence            477899999999999999999874 6787 688999876543 222221110   0000000000111234566789999


Q ss_pred             EEccCC
Q 022672          149 SLHPVL  154 (294)
Q Consensus       149 ~l~~Pl  154 (294)
                      +.+.|.
T Consensus       199 INaTp~  204 (283)
T PRK14027        199 VNATPM  204 (283)
T ss_pred             EEcCCC
Confidence            999984

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.65  E-value=0.067  Score=52.54  Aligned_cols=115  Identities=17%  Similarity=0.134  Sum_probs=69.6

Q ss_pred             ccCCCEEEEEcC----------ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhh----hhhhcC------CCC
Q 022672           70 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ----FLKANG------EQP  129 (294)
Q Consensus        70 ~l~gktvGIIGl----------G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~----~~~~~~------~~~  129 (294)
                      .+.|++|+|+|+          ..-...+++.| ...|.+|.+|||........  ..++.    +.....      ...
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  397 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQIQ--RDLSMNKFDWDHPRHLQPMSPTAV  397 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHHH--HHhhcccccccccccccccccccc
Confidence            589999999998          45778899988 57899999999985331110  00000    000000      000


Q ss_pred             ccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 022672          130 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL  190 (294)
Q Consensus       130 ~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL  190 (294)
                      -......++++.++++|+|+++..- ++-+.+--++....|++..+++|. |+ +.|.+.+
T Consensus       398 ~~~~~~~~~~~a~~~aD~vvi~t~~-~ef~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~  455 (473)
T PLN02353        398 KQVSVVWDAYEATKGAHGICILTEW-DEFKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKL  455 (473)
T ss_pred             cceeeeCCHHHHhcCCCEEEECCCC-hHhcccCHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence            0112345677899999999999873 333433223445667766688885 43 4565554

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.64  E-value=0.13  Score=49.71  Aligned_cols=118  Identities=20%  Similarity=0.185  Sum_probs=67.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc-CCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDiV  148 (294)
                      ++.||++.|+|.|.+|.++|+.| ...|++|+++|......... ..    .+...+   .....-....+++.+ .|+|
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~-~~----~l~~~g---~~~~~~~~~~~~~~~~~d~v   72 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSENPE-AQ----ELLEEG---IKVICGSHPLELLDEDFDLM   72 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccchhH-HH----HHHhcC---CEEEeCCCCHHHhcCcCCEE
Confidence            36789999999999999999998 68999999999754221110 00    011111   111111122344444 8988


Q ss_pred             EEccCCCccc----------cccccHH-HHhcC-CCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          149 SLHPVLDKTT----------YHLINKE-RLATM-KKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       149 ~l~~Plt~~t----------~~li~~~-~l~~m-k~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      +...-..++.          ..++.+. ++..+ +...+-|--+.|+.--..-|...|+.
T Consensus        73 V~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~  132 (447)
T PRK02472         73 VKNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA  132 (447)
T ss_pred             EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            7765222211          1223322 22233 33345565577887777777777764

>PRK08328 hypothetical protein; Provisional

Probab=95.60  E-value=0.042  Score=48.77  Aligned_cols=106  Identities=24%  Similarity=0.289  Sum_probs=60.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-HHH---hhhhh---------hhhhcCCCCccc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-KFV---TAYGQ---------FLKANGEQPVTW  132 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~~~---~~~~~---------~~~~~~~~~~~~  132 (294)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|+ +++.+|...-..  .. .+.   +..+.         .+... ...+..
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~-np~v~v  100 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF-NSDIKI  100 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh-CCCCEE
Confidence            4689999999999999999999985 6676 577777543110  00 000   00000         01100 011111


Q ss_pred             c------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          133 K------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       133 ~------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .      ...+++++++++|+|+.|+- +.+++.++++-..+   .+.-+|+.+
T Consensus       101 ~~~~~~~~~~~~~~~l~~~D~Vid~~d-~~~~r~~l~~~~~~---~~ip~i~g~  150 (231)
T PRK08328        101 ETFVGRLSEENIDEVLKGVDVIVDCLD-NFETRYLLDDYAHK---KGIPLVHGA  150 (231)
T ss_pred             EEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHH---cCCCEEEEe
Confidence            1      12346678889999998886 35677777654333   344566654

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.60  E-value=0.033  Score=52.63  Aligned_cols=97  Identities=25%  Similarity=0.180  Sum_probs=57.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HHH------------HHhhhhhhhhhcCCCCcccc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANGEQPVTWK  133 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~  133 (294)
                      ..|.+++|.|||+|.+|..+|+.|+ ..|+ ++..+|...-..  +.+            -.+...+.+.... ..+...
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v~v~  101 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-PDVKVT  101 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC-CCcEEE
Confidence            4689999999999999999999985 6676 677777553110  000            0000001111111 111111


Q ss_pred             c------cCCHHHHhhcCCEEEEccCCCccccccccHHHHh
Q 022672          134 R------ASSMDEVLREADVISLHPVLDKTTYHLINKERLA  168 (294)
Q Consensus       134 ~------~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~  168 (294)
                      .      ..+..++++++|+|+.|.- +.+++.+++....+
T Consensus       102 ~~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~  141 (355)
T PRK05597        102 VSVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAAR  141 (355)
T ss_pred             EEEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence            1      1234578899999998885 56677777665544

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=95.59  E-value=0.15  Score=47.24  Aligned_cols=93  Identities=23%  Similarity=0.328  Sum_probs=61.7

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           70 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        70 ~l~gktvGIIGl---G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      .+.|++|++||=   +++.++++..+ ..||+++....|..-.. +             ...  ......++++.++++|
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~~-~-------------~~~--~~~~~~d~~ea~~~aD  215 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLLP-E-------------GMP--EYGVHTDLDEVIEDAD  215 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccCc-c-------------ccc--ceEEECCHHHHhCCCC
Confidence            478999999988   58999999986 68999999887743210 0             000  1234578999999999


Q ss_pred             EEEEccCCCcc-------------ccccccHHHHhcCCCCcEEEEc
Q 022672          147 VISLHPVLDKT-------------TYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       147 iV~l~~Plt~~-------------t~~li~~~~l~~mk~gailIN~  179 (294)
                      +|....=-.+.             -...++++.++.+|++++|..+
T Consensus       216 vvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHc  261 (305)
T PRK00856        216 VVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHP  261 (305)
T ss_pred             EEEECCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECC
Confidence            99764311000             0223566666666677666665

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=95.55  E-value=0.086  Score=52.51  Aligned_cols=39  Identities=26%  Similarity=0.228  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      ..+.+|++.|+|.|.+|++++..| ...|++|+.++++.+
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e  413 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYE  413 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHH
Confidence            357899999999999999999998 578889999998754

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.54  E-value=0.029  Score=50.09  Aligned_cols=98  Identities=17%  Similarity=0.293  Sum_probs=58.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HHH-H-----------HhhhhhhhhhcCCCCcccc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK-F-----------VTAYGQFLKANGEQPVTWK  133 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~~-~-----------~~~~~~~~~~~~~~~~~~~  133 (294)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. +++.+|...-..  +.+ +           .+...+.+.... ......
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~in-p~v~i~   97 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQIN-PHIAIN   97 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHC-CCcEEE
Confidence            3589999999999999999999985 5665 677777543211  000 0           000001111111 111111


Q ss_pred             ----c--cCCHHHHhhcCCEEEEccCCCccccccccHHHHhc
Q 022672          134 ----R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  169 (294)
Q Consensus       134 ----~--~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~  169 (294)
                          .  ..+++++++++|+|+.|.- +.+++..+++...+.
T Consensus        98 ~~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~  138 (240)
T TIGR02355        98 PINAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAA  138 (240)
T ss_pred             EEeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHc
Confidence                1  1235678899999998885 567787787666553

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.53  E-value=0.058  Score=43.83  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=26.7

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  106 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~  106 (294)
                      +|.|+|+|.+|..+++.|+ ..|+ ++..+|..
T Consensus         1 ~VliiG~GglGs~ia~~L~-~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLA-RSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHH-HCCCCEEEEEcCC
Confidence            5899999999999999984 6777 68888865

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06392 homoserine dehydrogenase; Provisional

Probab=95.53  E-value=0.055  Score=50.56  Aligned_cols=116  Identities=13%  Similarity=0.176  Sum_probs=64.7

Q ss_pred             EEEEEcCChHHHHHHHHHhhc-------CCCEEEE-EcCCchhH------HHHHHhhhhhhhhhcCCCCcccccc--CCH
Q 022672           75 TVGVIGAGRIGSAYARMMVEG-------FKMNLIY-YDLYQATR------LEKFVTAYGQFLKANGEQPVTWKRA--SSM  138 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~-------~g~~V~~-~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~l  138 (294)
                      +|+|+|+|.+|+.+++.|.+.       ++.+|++ .|++....      .+...+    .... +  .......  .++
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~----~~~~-g--~l~~~~~~~~~~   74 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIIS----YKEK-G--RLEEIDYEKIKF   74 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHH----HHhc-C--ccccCCCCcCCH
Confidence            799999999999999987442       6777665 45432100      001000    0000 0  0000011  156


Q ss_pred             HHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCC
Q 022672          139 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNP  198 (294)
Q Consensus       139 ~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v-d~~aL~~aL~~g~  198 (294)
                      ++++ .++|+|+=|.|.. ++-.-.-.-..+.|+.|.-+|-...|.+. ....|.+..+++.
T Consensus        75 ~~ll~~~~DVvVE~t~~~-~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g  135 (326)
T PRK06392         75 DEIFEIKPDVIVDVTPAS-KDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNR  135 (326)
T ss_pred             HHHhcCCCCEEEECCCCC-CcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcC
Confidence            6664 5689999999842 22111113335667788888888877764 4555666665554

>PLN02342 ornithine carbamoyltransferase

Probab=95.52  E-value=0.44  Score=44.93  Aligned_cols=139  Identities=15%  Similarity=0.136  Sum_probs=82.0

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC-ChHHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA   89 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA   89 (294)
                      +.++..+|+|-|.-+....++  .+++=++.+.++                     .| .+.|++|++||= .++-++++
T Consensus       156 ~la~~~~vPVINA~~~~~HPt--QaLaDl~Ti~e~---------------------~G-~l~glkva~vGD~~nva~Sli  211 (348)
T PLN02342        156 DLAEYSSVPVINGLTDYNHPC--QIMADALTIIEH---------------------IG-RLEGTKVVYVGDGNNIVHSWL  211 (348)
T ss_pred             HHHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH---------------------hC-CcCCCEEEEECCCchhHHHHH
Confidence            445667899999865543332  122222222221                     12 478999999997 35777777


Q ss_pred             HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc----CCCcc--------
Q 022672           90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP----VLDKT--------  157 (294)
Q Consensus        90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~----Plt~~--------  157 (294)
                      ..+ ..||++|....|..-...+.+.+.    +...+.  ..+....++++.++++|+|..-.    -..+.        
T Consensus       212 ~~~-~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~--~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~  284 (348)
T PLN02342        212 LLA-AVLPFHFVCACPKGYEPDAKTVEK----ARAAGI--SKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAF  284 (348)
T ss_pred             HHH-HHcCCEEEEECCcccccCHHHHHH----HHHhCC--CcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhc
Confidence            765 579999998887542211111111    111111  12334578999999999998752    11010        


Q ss_pred             ccccccHHHHhcCCCCcEEEEcC
Q 022672          158 TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       158 t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ....++++.++.+|++++|..+.
T Consensus       285 ~~y~vt~ell~~ak~~aivMHpL  307 (348)
T PLN02342        285 QGFQVNEALMKLAGPQAYFMHCL  307 (348)
T ss_pred             cCCccCHHHHhccCCCcEEeCCC
Confidence            12456778888888888887773

>PRK06153 hypothetical protein; Provisional

Probab=95.52  E-value=0.045  Score=52.05  Aligned_cols=107  Identities=15%  Similarity=0.148  Sum_probs=61.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh--------------HHHH---HHhhhhhhhhhcCCCCcc
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------RLEK---FVTAYGQFLKANGEQPVT  131 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~  131 (294)
                      .|++++|+|||+|.+|..++..|+ ..|. +++.+|...-.              ...+   -++...+.+.... ..+.
T Consensus       173 kL~~~~VaIVG~GG~GS~Va~~LA-R~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in-~~I~  250 (393)
T PRK06153        173 KLEGQRIAIIGLGGTGSYILDLVA-KTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMR-RGIV  250 (393)
T ss_pred             HHhhCcEEEEcCCccHHHHHHHHH-HcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhC-CeEE
Confidence            689999999999999999999986 5565 78888754110              0000   0000111111111 0110


Q ss_pred             c--ccc--CCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          132 W--KRA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       132 ~--~~~--~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      .  ...  ..+ +.+.++|+|+.|+. +.+++.++++...+.   +.-+|++|-+=
T Consensus       251 ~~~~~I~~~n~-~~L~~~DiV~dcvD-n~~aR~~ln~~a~~~---gIP~Id~G~~l  301 (393)
T PRK06153        251 PHPEYIDEDNV-DELDGFTFVFVCVD-KGSSRKLIVDYLEAL---GIPFIDVGMGL  301 (393)
T ss_pred             EEeecCCHHHH-HHhcCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEeeecc
Confidence            0  011  122 35688999999987 455677777665543   44577775543

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.52  E-value=0.032  Score=51.40  Aligned_cols=100  Identities=21%  Similarity=0.292  Sum_probs=57.6

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HHH-H----Hh---------hhhhhhhhcCCCCccc-----
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK-F----VT---------AYGQFLKANGEQPVTW-----  132 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~~-~----~~---------~~~~~~~~~~~~~~~~-----  132 (294)
                      +|.|||.|.+|..+|+.|+ ..|+ +++.+|...-..  +.+ +    .+         ...+.+.... ..+..     
T Consensus         1 kVLIvGaGGLGs~vA~~La-~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iN-P~v~v~~~~~   78 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLL-GWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIF-PSIDATGIVL   78 (307)
T ss_pred             CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHC-CCcEEEEeee
Confidence            5899999999999999984 6777 577777432110  000 0    00         0000111111 11111     


Q ss_pred             ------------------cccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          133 ------------------KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       133 ------------------~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                                        .....++++++++|+|+.++. +-+++.+++.-....-|   .+|+.+
T Consensus        79 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~~~k---~~I~aa  140 (307)
T cd01486          79 SIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD-SRESRWLPTLLSAAKNK---LVINAA  140 (307)
T ss_pred             eccccccccccccccccccCHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHHhCC---cEEEEE
Confidence                              011236789999999999995 77888887665544323   566654

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.47  E-value=0.046  Score=53.33  Aligned_cols=116  Identities=20%  Similarity=0.273  Sum_probs=69.5

Q ss_pred             ccCCCEEEEEcCChHHHH-HHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~-vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ..++++|.|+|+|..|.+ +|+.| +..|.+|.++|.......+.        +...+   +....-.+ .+.+.++|+|
T Consensus         4 ~~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~~~~~--------l~~~g---i~~~~~~~-~~~~~~~d~v   70 (461)
T PRK00421          4 LRRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESAVTQR--------LLELG---AIIFIGHD-AENIKDADVV   70 (461)
T ss_pred             cCCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCChHHHH--------HHHCC---CEEeCCCC-HHHCCCCCEE
Confidence            356789999999999999 79987 68999999999765432221        11111   11111112 3456689998


Q ss_pred             EEccCCCcccc----------ccccH-HHHhc-CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672          149 SLHPVLDKTTY----------HLINK-ERLAT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       149 ~l~~Plt~~t~----------~li~~-~~l~~-mk~-gailIN~aRG~~vd~~aL~~aL~~g~  198 (294)
                      +...-..+...          .+++. +++.. +++ ..+-|--+.|+.--..=+.+.|+...
T Consensus        71 v~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         71 VYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            77653323211          23433 33333 332 34556556788777776777776543

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=95.45  E-value=0.014  Score=49.87  Aligned_cols=67  Identities=15%  Similarity=0.285  Sum_probs=46.7

Q ss_pred             EEEEEcCChHHHHHHHH-HhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672           75 TVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  150 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~-L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  150 (294)
                      ++.|||.|++|++++.. ..+..||+++ +||..++..        |.     ...++.+...+++++.++  +.|+.++
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V--------G~-----~~~~v~V~~~d~le~~v~~~dv~iaiL  152 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV--------GT-----KIGDVPVYDLDDLEKFVKKNDVEIAIL  152 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh--------Cc-----ccCCeeeechHHHHHHHHhcCccEEEE
Confidence            58999999999999964 2246789866 588766531        11     112244455678888887  6777899


Q ss_pred             ccCC
Q 022672          151 HPVL  154 (294)
Q Consensus       151 ~~Pl  154 (294)
                      |+|.
T Consensus       153 tVPa  156 (211)
T COG2344         153 TVPA  156 (211)
T ss_pred             EccH
Confidence            9993

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=95.43  E-value=0.11  Score=48.70  Aligned_cols=75  Identities=13%  Similarity=0.262  Sum_probs=49.4

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           70 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        70 ~l~gktvGIIGl---G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      .+.|++|++||=   +++..+.+..|+.-+|++|....|..-...+.+.+.    +...+   ..+....+++|.++++|
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~ea~~~aD  228 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISD----IENAG---HKITITDQLEGNLDKAD  228 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHH----HHHcC---CeEEEEcCHHHHHccCC
Confidence            588999999999   578888887654345999988877532111121111    11111   22344579999999999


Q ss_pred             EEEEc
Q 022672          147 VISLH  151 (294)
Q Consensus       147 iV~l~  151 (294)
                      +|..-
T Consensus       229 vvyt~  233 (338)
T PRK08192        229 ILYLT  233 (338)
T ss_pred             EEEEc
Confidence            99874

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.43  E-value=0.058  Score=50.36  Aligned_cols=30  Identities=23%  Similarity=0.378  Sum_probs=23.4

Q ss_pred             EEEEEcCChHHHHHHHHHhhcC----CCEEEEEcC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDL  105 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~----g~~V~~~d~  105 (294)
                      +|||+|+|+||+.+.|.|. ..    +++|...+.
T Consensus         1 ~IaInGfGrIGR~vlr~l~-e~~~~~~~~vvaInd   34 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALY-ESGERLGIEVVALNE   34 (325)
T ss_pred             CEEEECCCHHHHHHHHHHH-hcCCCCCeEEEEEec
Confidence            4899999999999999863 33    478776643

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK07806 short chain dehydrogenase; Provisional

Probab=95.42  E-value=0.083  Score=46.35  Aligned_cols=38  Identities=26%  Similarity=0.329  Sum_probs=31.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .+.||++.|.|. |.||+.+++.| ...|++|++.+++..
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l-~~~G~~V~~~~r~~~   41 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKIL-AGAGAHVVVNYRQKA   41 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHH-HHCCCEEEEEeCCch
Confidence            367899999997 99999999998 467999988877543

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=95.40  E-value=0.084  Score=48.39  Aligned_cols=70  Identities=17%  Similarity=0.261  Sum_probs=43.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  150 (294)
                      .++||||.|.||+..+..+.+.-++++.+ +|+.+......+..       ..+   .. ....+.+++++  +.|+|++
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~-------~~G---i~-~~~~~~e~ll~~~dIDaV~i   70 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAR-------ELG---VK-TSAEGVDGLLANPDIDIVFD   70 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHH-------HCC---CC-EEECCHHHHhcCCCCCEEEE
Confidence            36999999999998876654444677654 66655432111111       111   11 12357888885  5788999


Q ss_pred             ccCC
Q 022672          151 HPVL  154 (294)
Q Consensus       151 ~~Pl  154 (294)
                      +.|.
T Consensus        71 aTp~   74 (285)
T TIGR03215        71 ATSA   74 (285)
T ss_pred             CCCc
Confidence            9983

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=95.39  E-value=0.061  Score=49.78  Aligned_cols=77  Identities=17%  Similarity=0.141  Sum_probs=51.3

Q ss_pred             EEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           75 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        75 tvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      +|+|+|. |-.|.++.|+|+..-.+++.....+...                        ...+.+++++++|++++|+|
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~------------------------~~~~~~~~~~~~D~vFlalp   58 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK------------------------DAAERAKLLNAADVAILCLP   58 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc------------------------CcCCHhHhhcCCCEEEECCC
Confidence            7999998 9999999999865556777655322110                        01245677889999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcC
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .. .+..+. ...   .+.|+.+||.|
T Consensus        59 ~~-~s~~~~-~~~---~~~g~~VIDlS   80 (310)
T TIGR01851        59 DD-AAREAV-SLV---DNPNTCIIDAS   80 (310)
T ss_pred             HH-HHHHHH-HHH---HhCCCEEEECC
Confidence            32 223222 111   24688888887

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.39  E-value=0.043  Score=46.53  Aligned_cols=92  Identities=21%  Similarity=0.293  Sum_probs=52.6

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh--HHH-HH----------HhhhhhhhhhcCCCCcccc------c
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--RLE-KF----------VTAYGQFLKANGEQPVTWK------R  134 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~--~~~-~~----------~~~~~~~~~~~~~~~~~~~------~  134 (294)
                      +|+|||+|.+|..+++.|+ ..|+ ++..+|...-.  ... .+          .+.....+.... ......      .
T Consensus         1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~ln-p~v~i~~~~~~~~   78 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREIN-PFVKIEAINIKID   78 (174)
T ss_pred             CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHC-CCCEEEEEEeecC
Confidence            4899999999999999985 5677 58888866410  000 00          000001111111 111110      1


Q ss_pred             cCCHHHHhhcCCEEEEccCCCccccccccHHHHhc
Q 022672          135 ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  169 (294)
Q Consensus       135 ~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~  169 (294)
                      ..+++++++++|+|+.|.- +.+++..++....+.
T Consensus        79 ~~~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~  112 (174)
T cd01487          79 ENNLEGLFGDCDIVVEAFD-NAETKAMLAESLLGN  112 (174)
T ss_pred             hhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHH
Confidence            1245678889999998854 677777666665553

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.34  E-value=0.11  Score=50.28  Aligned_cols=99  Identities=14%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC---HH-HHhhcC
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MD-EVLREA  145 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-ell~~a  145 (294)
                      .+..+++.|+|+|.+|+.+++.| ...|.+|+++|..++.. +......       .....-.-...+   |+ .-+.++
T Consensus       228 ~~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~~-~~~~~~~-------~~~~~i~gd~~~~~~L~~~~~~~a  298 (453)
T PRK09496        228 EKPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPERA-EELAEEL-------PNTLVLHGDGTDQELLEEEGIDEA  298 (453)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHC-------CCCeEEECCCCCHHHHHhcCCccC
Confidence            34578999999999999999998 68899999999876532 2211100       000000001112   22 224789


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      |.|+++.+..  ...++-....+.+.+..+++-+
T Consensus       299 ~~vi~~~~~~--~~n~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        299 DAFIALTNDD--EANILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             CEEEECCCCc--HHHHHHHHHHHHhCCCeEEEEE
Confidence            9999888743  3334434444555555555543

>PLN02602 lactate dehydrogenase

Probab=95.34  E-value=0.09  Score=49.61  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=58.5

Q ss_pred             CEEEEEcCChHHHHHHHHHh-hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~-~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.+|..+|-.|+ +++.-++..+|...........+-. . ....... .......+.++ +++||+|+++.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~-~-~~~~~~~-~~i~~~~dy~~-~~daDiVVitA  113 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQ-H-AAAFLPR-TKILASTDYAV-TAGSDLCIVTA  113 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHH-h-hhhcCCC-CEEEeCCCHHH-hCCCCEEEECC
Confidence            69999999999999998763 2444589999987643222222211 0 0000001 12222235554 89999999985


Q ss_pred             CCCc---ccc-ccc--cH-------HHHhcCCCCcEEEEcC
Q 022672          153 VLDK---TTY-HLI--NK-------ERLATMKKEAILVNCS  180 (294)
Q Consensus       153 Plt~---~t~-~li--~~-------~~l~~mk~gailIN~a  180 (294)
                      -...   +++ .++  |.       +.+....|.+++|+++
T Consensus       114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        114 GARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            4321   223 111  11       2234456788999987

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.34  E-value=0.22  Score=43.62  Aligned_cols=97  Identities=21%  Similarity=0.206  Sum_probs=58.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC-ccccccCCHHH-H----hhc
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDE-V----LRE  144 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~e-l----l~~  144 (294)
                      ..|++|.|.|.|.+|+.+++.+ +..|.+|++.+++.... +. ....       +... .... ..+..+ +    -..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a-~~~g~~v~~~~~~~~~~-~~-~~~~-------g~~~~~~~~-~~~~~~~~~~~~~~~  201 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLA-KAAGARVIVTDRSDEKL-EL-AKEL-------GADHVIDYK-EEDLEEELRLTGGGG  201 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHHH-HH-HHHh-------CCceeccCC-cCCHHHHHHHhcCCC
Confidence            4678999999999999999875 78999999998765332 11 1111       1000 0000 011211 1    245


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      .|+++.+++..     ..-...+..|+++..+++++...
T Consensus       202 ~d~vi~~~~~~-----~~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         202 ADVVIDAVGGP-----ETLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             CCEEEECCCCH-----HHHHHHHHhcccCCEEEEEccCC
Confidence            78888877621     12255667788888888876543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=95.32  E-value=0.46  Score=44.11  Aligned_cols=66  Identities=15%  Similarity=0.153  Sum_probs=47.7

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           70 LLKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        70 ~l~gktvGIIGl---G~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      .+.|.+|+++|=   +++.+++...+ ..+|+ ++....|..-. .+.             .....+....++++.++++
T Consensus       154 ~l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~-p~~-------------~~~~~~~~~~d~~ea~~~a  218 (310)
T PRK13814        154 HWNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLL-PDK-------------VGNDSIKKFTELKPSLLNS  218 (310)
T ss_pred             CcCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccC-cCc-------------cccceEEEEcCHHHHhCCC
Confidence            378999999998   59999999986 58999 89888774311 000             0001233457899999999


Q ss_pred             CEEEE
Q 022672          146 DVISL  150 (294)
Q Consensus       146 DiV~l  150 (294)
                      |+|..
T Consensus       219 Dvvy~  223 (310)
T PRK13814        219 DVIVT  223 (310)
T ss_pred             CEEEE
Confidence            99976

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=95.29  E-value=0.073  Score=50.07  Aligned_cols=99  Identities=18%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-HhhcCCEEEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVISL  150 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV~l  150 (294)
                      ++|+|+|. |.+|+.+++.|...-++++.. .++.....  ...+.+. .+  ......   ...++++ ...++|+|++
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~--~l~~~~~-~~--~~~~~~---~~~~~~~~~~~~vD~Vf~   74 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGK--PLSDVHP-HL--RGLVDL---VLEPLDPEILAGADVVFL   74 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCc--chHHhCc-cc--ccccCc---eeecCCHHHhcCCCEEEE
Confidence            58999997 999999999884333778755 45322110  0000000 00  000010   1122332 4578999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  185 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v  185 (294)
                      |+|.. ....+    ..+.++.|..+|+.|-.--.
T Consensus        75 alP~~-~~~~~----v~~a~~aG~~VID~S~~fR~  104 (343)
T PRK00436         75 ALPHG-VSMDL----APQLLEAGVKVIDLSADFRL  104 (343)
T ss_pred             CCCcH-HHHHH----HHHHHhCCCEEEECCcccCC
Confidence            99942 22211    12223578999999844333

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=95.25  E-value=0.19  Score=46.57  Aligned_cols=76  Identities=24%  Similarity=0.342  Sum_probs=43.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCC--EEEEEcCCch-hHHHH-HHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQA-TRLEK-FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~--~V~~~d~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ++|+|+|. |.+|..+|..|+ ..|.  +|+.+|+... ..... ..+-. +.+...+ .........+.+ .+++||+|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~-d~~~~~~-~~~~i~~~~d~~-~l~~aDiV   76 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIY-DALAAAG-IDAEIKISSDLS-DVAGSDIV   76 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhh-hchhccC-CCcEEEECCCHH-HhCCCCEE
Confidence            47999998 999999999874 4444  6999998431 11111 11100 0000011 011122223554 48999999


Q ss_pred             EEccC
Q 022672          149 SLHPV  153 (294)
Q Consensus       149 ~l~~P  153 (294)
                      +++..
T Consensus        77 iitag   81 (309)
T cd05294          77 IITAG   81 (309)
T ss_pred             EEecC
Confidence            99986

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.24  E-value=0.068  Score=52.33  Aligned_cols=119  Identities=18%  Similarity=0.146  Sum_probs=67.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ..+.++++.|||.|.+|.++|+.| ...|.+|.++|...........+    .+...+   +.+..-...+ ....+|+|
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~~----~l~~~g---v~~~~~~~~~-~~~~~D~V   82 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDDERHRALAA----ILEALG---ATVRLGPGPT-LPEDTDLV   82 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHHH----HHHHcC---CEEEECCCcc-ccCCCCEE
Confidence            457899999999999999999987 58999999999664322111111    111112   1111101111 34579999


Q ss_pred             EEccCCCcccc----------ccccH-HHH-hcCCC----CcEEEEcCCCcccCHHHHHHHHHc
Q 022672          149 SLHPVLDKTTY----------HLINK-ERL-ATMKK----EAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       149 ~l~~Plt~~t~----------~li~~-~~l-~~mk~----gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      +++.--.+.+.          .++++ +++ ..+.+    ..+-|--+.|+.--..=|...|+.
T Consensus        83 v~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         83 VTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             EECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            88764333222          12322 232 33422    235555567777766666677754

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.24  E-value=0.047  Score=53.16  Aligned_cols=112  Identities=22%  Similarity=0.240  Sum_probs=66.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+.|++|.|+|+|..|.++|+.| ...|.+|.++|....... .        +...+..   .... .. +-+.++|+|+
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~-~--------l~~~g~~---~~~~-~~-~~~~~~d~vv   70 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPASRA-K--------AAAAGIT---TADL-RT-ADWSGFAALV   70 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChhhHH-H--------HHhcCcc---ccCC-Ch-hHHcCCCEEE
Confidence            37789999999999999999987 689999999996543221 1        1111111   1111 11 2356899887


Q ss_pred             Ecc--CCC-c----c---c----cccccH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          150 LHP--VLD-K----T---T----YHLINK-ERLAT-M-----KKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       150 l~~--Plt-~----~---t----~~li~~-~~l~~-m-----k~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ...  |.+ +    .   +    ..++.+ +.+.. +     +...+-|.-+.|+.--..-|...|+.
T Consensus        71 ~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~  138 (460)
T PRK01390         71 LSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE  138 (460)
T ss_pred             ECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence            643  211 1    1   0    111332 22222 2     33455666678888877777777765

>PRK05086 malate dehydrogenase; Provisional

Probab=95.21  E-value=0.13  Score=47.65  Aligned_cols=101  Identities=24%  Similarity=0.224  Sum_probs=58.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhh--cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHHhhcCCEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLREADVI  148 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~--~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~~aDiV  148 (294)
                      ++|+|||. |.||+++|..|..  ..+.++..+|+..... ....+     +. +.........  ..++.+.++++|+|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~-g~alD-----l~-~~~~~~~i~~~~~~d~~~~l~~~DiV   73 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTP-GVAVD-----LS-HIPTAVKIKGFSGEDPTPALEGADVV   73 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCc-ceehh-----hh-cCCCCceEEEeCCCCHHHHcCCCCEE
Confidence            57999999 9999999977633  3556888899764321 00001     00 0000011111  24667788999999


Q ss_pred             EEccCCCcccccc-----c------cHHHH---hcCCCCcEEEEcCCC
Q 022672          149 SLHPVLDKTTYHL-----I------NKERL---ATMKKEAILVNCSRG  182 (294)
Q Consensus       149 ~l~~Plt~~t~~l-----i------~~~~l---~~mk~gailIN~aRG  182 (294)
                      +++.-. +...++     +      -++..   ....+.+++++++-.
T Consensus        74 IitaG~-~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP  120 (312)
T PRK05086         74 LISAGV-ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP  120 (312)
T ss_pred             EEcCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            998864 222221     1      12223   333578899998654

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.17  E-value=0.049  Score=53.35  Aligned_cols=116  Identities=19%  Similarity=0.200  Sum_probs=67.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      +.||+|+|+|+|.-|.++|+.| ...|++|+++|...........     .+.....  . .....+ .+.+.++|+|+.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~~~~~~~~-----~l~~~~~--~-~~~~~~-~~~~~~~d~vV~   75 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNAVEAREVG-----ALADAAL--L-VETEAS-AQRLAAFDVVVK   75 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCcccchHHH-----HHhhcCE--E-EeCCCC-hHHccCCCEEEE
Confidence            5689999999999999999997 6899999999965432111100     0111000  0 011112 355678999877


Q ss_pred             ccCCCccc----------cccccHHH--Hhc-CC-----CCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          151 HPVLDKTT----------YHLINKER--LAT-MK-----KEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       151 ~~Plt~~t----------~~li~~~~--l~~-mk-----~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ..--.++.          ..++.+-.  +.. ++     ...+-|--+.|+.--..-+.+.|+.
T Consensus        76 SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~  139 (468)
T PRK04690         76 SPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA  139 (468)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            65332321          12344333  232 32     1345565567887777777777754

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.15  E-value=0.14  Score=47.25  Aligned_cols=99  Identities=17%  Similarity=0.180  Sum_probs=56.7

Q ss_pred             EEEEcCChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           76 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        76 vGIIGlG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      |+|||.|.+|..+|-.|+ ..|  .++..+|...........+ ....... . .........+ .+.+++||+|+++..
T Consensus         1 i~iiGaG~VG~~~a~~l~-~~~~~~el~l~D~~~~~~~g~~~D-L~~~~~~-~-~~~~i~~~~~-~~~l~~aDiVIitag   75 (300)
T cd00300           1 ITIIGAGNVGAAVAFALI-AKGLASELVLVDVNEEKAKGDALD-LSHASAF-L-ATGTIVRGGD-YADAADADIVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCccHHHHHHHh-HHHhccc-c-CCCeEEECCC-HHHhCCCCEEEEcCC
Confidence            589999999999998764 455  5899999876532221111 1110000 0 0111111234 357899999999986


Q ss_pred             CCcccccc------------cc--HHHHhcCCCCcEEEEcC
Q 022672          154 LDKTTYHL------------IN--KERLATMKKEAILVNCS  180 (294)
Q Consensus       154 lt~~t~~l------------i~--~~~l~~mk~gailIN~a  180 (294)
                      . +...++            +.  .+.+....|++++|+++
T Consensus        76 ~-p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          76 A-PRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            3 332221            10  12233345889999987

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.14  E-value=0.051  Score=51.75  Aligned_cols=100  Identities=22%  Similarity=0.193  Sum_probs=59.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCch------------------hHHHHHHhhhhhhhhhcCCCCc
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQPV  130 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~~  130 (294)
                      .|.+++|.|+|+|.+|..+++.|+ ..|+ ++..+|+..-                  ...+...+    .+.... ..+
T Consensus       132 ~l~~~~VlvvG~GG~Gs~ia~~La-~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~----~l~~~n-p~v  205 (376)
T PRK08762        132 RLLEARVLLIGAGGLGSPAALYLA-AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQ----RLAALN-PDV  205 (376)
T ss_pred             HHhcCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHH----HHHHHC-CCC
Confidence            589999999999999999999984 6777 6888887520                  11111111    111111 111


Q ss_pred             ccc------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          131 TWK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       131 ~~~------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      .+.      ...+++++++++|+|+.|+- +.+++.++++...+   .+.-+|..
T Consensus       206 ~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~---~~ip~i~~  256 (376)
T PRK08762        206 QVEAVQERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVK---LGKPLVYG  256 (376)
T ss_pred             EEEEEeccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH---cCCCEEEE
Confidence            111      11245678889999888875 45566666655443   23345554

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.02  E-value=0.098  Score=49.72  Aligned_cols=89  Identities=24%  Similarity=0.328  Sum_probs=58.9

Q ss_pred             cCCCEEEEEcCC----------hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 022672           71 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  140 (294)
Q Consensus        71 l~gktvGIIGlG----------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  140 (294)
                      |.||||||+|+-          .-...++++| +..|++|.+|||........            . .+ +.....++++
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~------------~-~~-~~~~~~~~~~  372 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR------------N-FP-DVELESDAEE  372 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh------------c-CC-CceEeCCHHH
Confidence            999999999983          3456788887 68999999999865432111            0 01 2345689999


Q ss_pred             HhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEE
Q 022672          141 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN  178 (294)
Q Consensus       141 ll~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN  178 (294)
                      .+++||.++++.. .++-+.+ +-+.+ .|| +.++++
T Consensus       373 ~~~~aDaivi~te-w~ef~~~-d~~~~-~m~-~~~v~D  406 (414)
T COG1004         373 ALKGADAIVINTE-WDEFRDL-DFEKL-LMK-TPVVID  406 (414)
T ss_pred             HHhhCCEEEEecc-HHHHhcc-Chhhh-hcc-CCEEEe
Confidence            9999999999875 2333332 22233 455 344554

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.00  E-value=0.11  Score=48.13  Aligned_cols=151  Identities=15%  Similarity=0.153  Sum_probs=80.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|.|+|.|.||.-++-+|+ ..|..|+.+.+...  .+++... +-.+...............-.+.+..+|+|++++-
T Consensus         1 mkI~IlGaGAvG~l~g~~L~-~~g~~V~~~~R~~~--~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK   76 (307)
T COG1893           1 MKILILGAGAIGSLLGARLA-KAGHDVTLLVRSRR--LEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK   76 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHH-hCCCeEEEEecHHH--HHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence            47999999999999999985 56677777766543  2222211 11111111100000112233355668999999987


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC---CCCCCCCCccCCCCeEEccCCC
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE---DEPYMKPGLSEMKNAIVVPHIA  230 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~---~EP~~~~~L~~~~nviiTPHia  230 (294)
                      . -++...+ +.....+++.+.++-.--| +=.++.+-+.....++.+ ++..+.   .+|.. -.......+.+.+..+
T Consensus        77 a-~q~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il~-G~~~~~a~~~~~g~-v~~~g~g~~~ig~~~~  151 (307)
T COG1893          77 A-YQLEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVLG-GVTTHGAVREGPGH-VVHTGLGDTVIGELRG  151 (307)
T ss_pred             c-ccHHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEEE-EEeeeeeEecCCce-EEEecCCcEEEccCCC
Confidence            3 3444433 5566777888777644333 333445555555543332 122111   12221 1123356777777776


Q ss_pred             CCc
Q 022672          231 SAS  233 (294)
Q Consensus       231 ~~t  233 (294)
                      ..+
T Consensus       152 ~~~  154 (307)
T COG1893         152 GRD  154 (307)
T ss_pred             Cch
Confidence            554

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=94.96  E-value=0.17  Score=49.27  Aligned_cols=109  Identities=19%  Similarity=0.141  Sum_probs=70.6

Q ss_pred             ccCCCEEEEEcC----ChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 022672           70 LLKGQTVGVIGA----GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  143 (294)
Q Consensus        70 ~l~gktvGIIGl----G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  143 (294)
                      -++=++|.|||.    |.+|..+.+.| +..|+  +|+..+|.....                   .+...+.+++++-.
T Consensus         4 l~~p~siavvGaS~~~~~~g~~~~~~l-~~~gf~g~v~~Vnp~~~~i-------------------~G~~~~~sl~~lp~   63 (447)
T TIGR02717         4 LFNPKSVAVIGASRDPGKVGYAIMKNL-IEGGYKGKIYPVNPKAGEI-------------------LGVKAYPSVLEIPD   63 (447)
T ss_pred             ccCCCEEEEEccCCCCCchHHHHHHHH-HhCCCCCcEEEECCCCCcc-------------------CCccccCCHHHCCC
Confidence            356688999999    88999999987 55554  788888764321                   12334578999888


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcE-EEEcCCCcc-----cCHHHHHHHHHcCCcce
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAI-LVNCSRGPV-----IDEVALVEHLKQNPMFR  201 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gai-lIN~aRG~~-----vd~~aL~~aL~~g~i~g  201 (294)
                      ..|++++++| .+.+...+ ++..+ ..-.++ ++.-+-++.     ..+++|.+..+++.+.-
T Consensus        64 ~~Dlavi~vp-~~~~~~~l-~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girv  124 (447)
T TIGR02717        64 PVDLAVIVVP-AKYVPQVV-EECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRL  124 (447)
T ss_pred             CCCEEEEecC-HHHHHHHH-HHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEE
Confidence            8999999999 23444444 33333 333344 443333332     23567888877776653

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=94.94  E-value=0.088  Score=47.35  Aligned_cols=187  Identities=19%  Similarity=0.156  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcC----CC-------E
Q 022672           31 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N   99 (294)
Q Consensus        31 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~----g~-------~   99 (294)
                      +|=-+++-+|+..|-                     .|..|.+.+|.|+|.|..|-.+|+.|. ..    |.       +
T Consensus         4 TaaV~lAgll~Al~~---------------------~g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~G~~~~eA~~~   61 (255)
T PF03949_consen    4 TAAVVLAGLLNALRV---------------------TGKKLSDQRIVFFGAGSAGIGIARLLV-AAMVREGLSEEEARKR   61 (255)
T ss_dssp             HHHHHHHHHHHHHHH---------------------HTS-GGG-EEEEEB-SHHHHHHHHHHH-HHHHCTTS-HHHHHTT
T ss_pred             hHHHHHHHHHHHHHH---------------------hCCCHHHcEEEEeCCChhHHHHHHHHH-HHHHHhcCCHHHHhcc
Confidence            455677777777762                     245699999999999999999999874 34    66       5


Q ss_pred             EEEEcCCch-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC--CEEEEccCCCccccccccHHHHhcCCC
Q 022672          100 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATMKK  172 (294)
Q Consensus       100 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~~Plt~~t~~li~~~~l~~mk~  172 (294)
                      ++.+|+..-     .........|    .......   ....+|.|+++.+  |+++=+-    ...+.|+++.++.|.+
T Consensus        62 i~lvD~~Gll~~~r~~l~~~~~~~----a~~~~~~---~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~  130 (255)
T PF03949_consen   62 IWLVDSKGLLTDDREDLNPHKKPF----ARKTNPE---KDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAK  130 (255)
T ss_dssp             EEEEETTEEEBTTTSSHSHHHHHH----HBSSSTT---T--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHH
T ss_pred             EEEEeccceEeccCccCChhhhhh----hccCccc---ccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhc
Confidence            888887621     1111111111    1111111   1125899999999  9987664    2578899999999987


Q ss_pred             ---CcEEEEcCCCcccCHHHHHHHHHc--CCcceEEeeCCCCCCCC-C---CCccCCCCeEEccCCCCC-----cHHHHH
Q 022672          173 ---EAILVNCSRGPVIDEVALVEHLKQ--NPMFRVGLDVFEDEPYM-K---PGLSEMKNAIVVPHIASA-----SKWTRE  238 (294)
Q Consensus       173 ---gailIN~aRG~~vd~~aL~~aL~~--g~i~ga~lDV~~~EP~~-~---~~L~~~~nviiTPHia~~-----t~~~~~  238 (294)
                         ..++.=.|....--|-.=.++.+-  |+...|  .-...+|.. +   ...-+..|+++-|=++-.     ...-.+
T Consensus       131 ~~erPIIF~LSNPt~~aE~~peda~~~t~g~ai~A--tGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd  208 (255)
T PF03949_consen  131 HNERPIIFPLSNPTPKAECTPEDAYEWTDGRAIFA--TGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITD  208 (255)
T ss_dssp             HSSSEEEEE-SSSCGGSSS-HHHHHHTTTSEEEEE--ESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--H
T ss_pred             cCCCCEEEECCCCCCcccCCHHHHHhhCCceEEEe--cCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCH
Confidence               899999998776333333334333  332222  111122210 1   123356788888865421     111235


Q ss_pred             HHHHHHHHHHHHHH
Q 022672          239 GMATLAALNVLGKI  252 (294)
Q Consensus       239 ~~~~~~~~nl~~~~  252 (294)
                      .|...+++-|.++.
T Consensus       209 ~M~~aAA~aLA~~v  222 (255)
T PF03949_consen  209 EMFLAAAEALADLV  222 (255)
T ss_dssp             HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhC
Confidence            56555666665544

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=94.90  E-value=0.041  Score=43.13  Aligned_cols=87  Identities=11%  Similarity=0.208  Sum_probs=52.3

Q ss_pred             cCChHHHHHHHHHhhc---CCCEEEE-EcCC--chhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEc
Q 022672           80 GAGRIGSAYARMMVEG---FKMNLIY-YDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  151 (294)
Q Consensus        80 GlG~IG~~vA~~L~~~---~g~~V~~-~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~  151 (294)
                      |+|.||+.+++.|.+.   .++++.+ ++++  .........              .......++++++.  +.|+|+=|
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~dvvVE~   66 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF--------------PDEAFTTDLEELIDDPDIDVVVEC   66 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH--------------THSCEESSHHHHHTHTT-SEEEE-
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc--------------ccccccCCHHHHhcCcCCCEEEEC
Confidence            8999999999998533   2777664 5665  111110000              01123478999998  99999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  185 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v  185 (294)
                      .+. +.    +.+-..+.|+.|.-+|-.+-+.+.
T Consensus        67 t~~-~~----~~~~~~~~L~~G~~VVt~nk~ala   95 (117)
T PF03447_consen   67 TSS-EA----VAEYYEKALERGKHVVTANKGALA   95 (117)
T ss_dssp             SSC-HH----HHHHHHHHHHTTCEEEES-HHHHH
T ss_pred             CCc-hH----HHHHHHHHHHCCCeEEEECHHHhh
Confidence            652 22    223345667788899999888888

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=94.86  E-value=0.097  Score=48.49  Aligned_cols=77  Identities=19%  Similarity=0.222  Sum_probs=44.0

Q ss_pred             EEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           75 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      +|+|||.|.+|..+|-.|+. +..-++..+|...........+-. ....-........ ...+ .+.+++||+|+++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~-~~~~~~~~~~~~i-~~~~-y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFH-HATALTYSTNTKI-RAGD-YDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHH-hhhccCCCCCEEE-EECC-HHHhCCCCEEEECCC
Confidence            58999999999999987642 333479999987543222222210 0000000001111 1234 466899999998765


Q ss_pred             C
Q 022672          154 L  154 (294)
Q Consensus       154 l  154 (294)
                      .
T Consensus        78 ~   78 (307)
T cd05290          78 P   78 (307)
T ss_pred             C
Confidence            3

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=94.86  E-value=0.058  Score=54.28  Aligned_cols=74  Identities=14%  Similarity=0.254  Sum_probs=48.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ....|+|||||-|..|+.+++.+ +.+|++|+.+|+.+......+.+.+         ....+.....+.++.+++|+|.
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~aA-~~lG~~Vi~ld~~~~apa~~~AD~~---------~v~~~~D~~~l~~~a~~~dvIt   88 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQAA-SQMGIKVKVLDPLEDCPASSVAARH---------VVGSFDDRAAVREFAKRCDVLT   88 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCchhhhCcee---------eeCCCCCHHHHHHHHHHCCEEE
Confidence            47889999999999999999985 7899999999987643211111100         0000111123566678889887


Q ss_pred             EccC
Q 022672          150 LHPV  153 (294)
Q Consensus       150 l~~P  153 (294)
                      ....
T Consensus        89 ~e~e   92 (577)
T PLN02948         89 VEIE   92 (577)
T ss_pred             EecC
Confidence            6544

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=94.81  E-value=0.051  Score=45.45  Aligned_cols=71  Identities=15%  Similarity=0.090  Sum_probs=47.4

Q ss_pred             EEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672           76 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  154 (294)
Q Consensus        76 vGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl  154 (294)
                      |.|+|. |.+|+.+++.| ...|.+|++..|++.+..+  ...    +.   .....+....++.+.++.+|.|+.+++.
T Consensus         1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~--~~~----~~---~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAED--SPG----VE---IIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHH--CTT----EE---EEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhccc--ccc----cc---cceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            678995 99999999997 5788999999888764321  000    00   0001112224567788999999999974


Q ss_pred             Cc
Q 022672          155 DK  156 (294)
Q Consensus       155 t~  156 (294)
                      +.
T Consensus        71 ~~   72 (183)
T PF13460_consen   71 PP   72 (183)
T ss_dssp             TT
T ss_pred             hc
Confidence            43

...

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.76  E-value=0.1  Score=45.60  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .+.++++.|+|. |.||+.+++.| ...|++|++.+++...
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l-~~~G~~V~~~~r~~~~   41 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRF-AAEGARVVVTDRNEEA   41 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            367899999996 89999999998 4679999999987643

>PRK08223 hypothetical protein; Validated

Probab=94.75  E-value=0.12  Score=47.48  Aligned_cols=98  Identities=11%  Similarity=0.101  Sum_probs=57.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-HH-----------HhhhhhhhhhcCCCCccc-
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-KF-----------VTAYGQFLKANGEQPVTW-  132 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~~-----------~~~~~~~~~~~~~~~~~~-  132 (294)
                      ..|++++|.|||+|.+|..+|+.|+ ..|+ ++..+|...-..  .. .+           .+...+.+.... ..+.+ 
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN-P~v~V~  100 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN-PELEIR  100 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC-CCCEEE
Confidence            4689999999999999999999985 6666 566776542110  00 00           000011111111 11111 


Q ss_pred             -----cccCCHHHHhhcCCEEEEccCCC-ccccccccHHHHh
Q 022672          133 -----KRASSMDEVLREADVISLHPVLD-KTTYHLINKERLA  168 (294)
Q Consensus       133 -----~~~~~l~ell~~aDiV~l~~Plt-~~t~~li~~~~l~  168 (294)
                           ....+.+++++++|+|+-++..- -+++.++++...+
T Consensus       101 ~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~  142 (287)
T PRK08223        101 AFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ  142 (287)
T ss_pred             EEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence                 11346778899999998777531 1677777766554

>PRK07411 hypothetical protein; Validated

Probab=94.70  E-value=0.083  Score=50.59  Aligned_cols=101  Identities=17%  Similarity=0.151  Sum_probs=60.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HHH-H-----------HhhhhhhhhhcCCCCcccc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK-F-----------VTAYGQFLKANGEQPVTWK  133 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~~-~-----------~~~~~~~~~~~~~~~~~~~  133 (294)
                      ..|..++|+|||+|.+|..+|+.|+ ..|+ ++..+|...-..  +.+ +           .+...+.+.... ..+.+.
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n-p~v~v~  111 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN-PYCQVD  111 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC-CCCeEE
Confidence            4689999999999999999999985 6676 577777542110  000 0           000011111111 111111


Q ss_pred             ------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCC
Q 022672          134 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK  172 (294)
Q Consensus       134 ------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~  172 (294)
                            ...+..+++.++|+|+.|.- +.+++.++++...+.-+|
T Consensus       112 ~~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        112 LYETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             EEecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence                  11235578899999988875 567888888776655444

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=94.70  E-value=0.11  Score=48.30  Aligned_cols=77  Identities=19%  Similarity=0.219  Sum_probs=48.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .+|+|||. |-.|+.+.+.|...-.+++.....+...                   ..     .+.++.++++|++++|+
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------------------~~-----~~~~~~~~~~DvvFlal   58 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------------------DA-----AARRELLNAADVAILCL   58 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------------------cc-----cCchhhhcCCCEEEECC
Confidence            47999995 9999999999853335566544322111                   00     23345678899999999


Q ss_pred             CCCccccccccHHHHhcC-CCCcEEEEcC
Q 022672          153 VLDKTTYHLINKERLATM-KKEAILVNCS  180 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~m-k~gailIN~a  180 (294)
                      |.. ..     .+....+ +.|+.+||.|
T Consensus        59 p~~-~s-----~~~~~~~~~~g~~VIDlS   81 (313)
T PRK11863         59 PDD-AA-----REAVALIDNPATRVIDAS   81 (313)
T ss_pred             CHH-HH-----HHHHHHHHhCCCEEEECC
Confidence            932 22     2222222 5688889887

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.68  E-value=0.1  Score=52.75  Aligned_cols=96  Identities=17%  Similarity=0.192  Sum_probs=58.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCH---HHH-hhcCCEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEV-LREADVI  148 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el-l~~aDiV  148 (294)
                      ...+-|+|+|++|+.+++.| ...|.++++.|.+++.. +...        ..+. ..-+-...+.   ++. +.++|.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~~~--------~~g~-~v~~GDat~~~~L~~agi~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISAV-NLMR--------KYGY-KVYYGDATQLELLRAAGAEKAEAI  468 (601)
T ss_pred             cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHHH-HHHH--------hCCC-eEEEeeCCCHHHHHhcCCccCCEE
Confidence            35799999999999999998 68899999999876542 2211        1111 1101111222   221 5789999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +++.+..+++..+  -...+.+.|...+|--+|
T Consensus       469 v~~~~d~~~n~~i--~~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        469 VITCNEPEDTMKI--VELCQQHFPHLHILARAR  499 (601)
T ss_pred             EEEeCCHHHHHHH--HHHHHHHCCCCeEEEEeC
Confidence            9999855444333  333445566666654444

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=94.59  E-value=0.26  Score=47.21  Aligned_cols=78  Identities=22%  Similarity=0.343  Sum_probs=48.8

Q ss_pred             ccCCCEEEEEcC-----C---hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 022672           70 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  141 (294)
Q Consensus        70 ~l~gktvGIIGl-----G---~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  141 (294)
                      .+.|++|+|+|-     |   ++.++++..+ ..+|++|....|..-.......+..-......+   ..+....++++.
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~-~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G---~~i~~~~d~~ea  259 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASG---GSFRQVNSMEEA  259 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            478999999985     5   5668888876 579999999887531111111110000011111   123345799999


Q ss_pred             hhcCCEEEEc
Q 022672          142 LREADVISLH  151 (294)
Q Consensus       142 l~~aDiV~l~  151 (294)
                      ++++|+|..-
T Consensus       260 v~~aDvVYtd  269 (395)
T PRK07200        260 FKDADIVYPK  269 (395)
T ss_pred             hCCCCEEEEc
Confidence            9999999765

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=94.58  E-value=0.058  Score=44.75  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=26.9

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEc-CC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LY  106 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d-~~  106 (294)
                      +|||-|||+||+.++|.+...-.+++++.+ +.
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~   34 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA   34 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence            799999999999999987656788988764 44

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK12937 short chain dehydrogenase; Provisional

Probab=94.57  E-value=0.16  Score=44.24  Aligned_cols=37  Identities=24%  Similarity=0.170  Sum_probs=30.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      .+.++++.|.|. |.||+.+|+.| ...|++|+...++.
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l-~~~g~~v~~~~~~~   39 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRL-AADGFAVAVNYAGS   39 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCCC
Confidence            367899999986 99999999998 47799988766543

>PRK04148 hypothetical protein; Provisional

Probab=94.54  E-value=0.12  Score=41.99  Aligned_cols=71  Identities=17%  Similarity=0.136  Sum_probs=45.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .++++..||+| -|..+|+.| ...|.+|++.|.++... +...+        .+...........--++.+.+|+|-.+
T Consensus        16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~aV-~~a~~--------~~~~~v~dDlf~p~~~~y~~a~liysi   84 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKAV-EKAKK--------LGLNAFVDDLFNPNLEIYKNAKLIYSI   84 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHHH-HHHHH--------hCCeEEECcCCCCCHHHHhcCCEEEEe
Confidence            56789999999 999999998 57899999999987642 21111        111111111122233677888888666


Q ss_pred             cC
Q 022672          152 PV  153 (294)
Q Consensus       152 ~P  153 (294)
                      =|
T Consensus        85 rp   86 (134)
T PRK04148         85 RP   86 (134)
T ss_pred             CC
Confidence            65

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.53  E-value=0.092  Score=52.58  Aligned_cols=91  Identities=13%  Similarity=0.163  Sum_probs=54.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC---HHH-HhhcCCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDE-VLREADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~e-ll~~aDiV~  149 (294)
                      -.+-|+|+|++|+.+|+.| +..|.++++.|.+++.. +...+        .+ ...-.-...+   +++ -++++|.++
T Consensus       418 ~hiiI~G~G~~G~~la~~L-~~~g~~vvvId~d~~~~-~~~~~--------~g-~~~i~GD~~~~~~L~~a~i~~a~~vi  486 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKL-LAAGIPLVVIETSRTRV-DELRE--------RG-IRAVLGNAANEEIMQLAHLDCARWLL  486 (558)
T ss_pred             CCEEEECCChHHHHHHHHH-HHCCCCEEEEECCHHHH-HHHHH--------CC-CeEEEcCCCCHHHHHhcCccccCEEE
Confidence            4688999999999999998 68899999999876542 22111        11 1110011122   222 146899999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEE
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILV  177 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailI  177 (294)
                      ++.+..+++..++-. . ..+.+...+|
T Consensus       487 v~~~~~~~~~~iv~~-~-~~~~~~~~ii  512 (558)
T PRK10669        487 LTIPNGYEAGEIVAS-A-REKRPDIEII  512 (558)
T ss_pred             EEcCChHHHHHHHHH-H-HHHCCCCeEE
Confidence            999865554444322 2 2334555555

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.53  E-value=0.16  Score=45.60  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=30.4

Q ss_pred             cCCCEEEEEcCC---hHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           71 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        71 l~gktvGIIGlG---~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      +.||++.|.|.+   .||+++|+.|+ ..|++|+..+++
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecc
Confidence            789999999996   69999999985 679999887765

>PRK13529 malate dehydrogenase; Provisional

Probab=94.52  E-value=1.7  Score=43.41  Aligned_cols=202  Identities=20%  Similarity=0.226  Sum_probs=118.5

Q ss_pred             CcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhc-
Q 022672           17 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG-   95 (294)
Q Consensus        17 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~-   95 (294)
                      .|.+.|.-=   +-+|--+++-+|+..|-                     .|..|.+.+|.|+|.|..|-.+|+.|... 
T Consensus       263 ~i~~FnDDi---QGTaaV~LAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~  318 (563)
T PRK13529        263 EICTFNDDI---QGTGAVTLAGLLAALKI---------------------TGEPLSDQRIVFLGAGSAGCGIADQIVAAM  318 (563)
T ss_pred             CCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHHHHH
Confidence            466666532   33555677777877762                     23568999999999999999999987532 


Q ss_pred             --CCC-------EEEEEcCCc---hhH--HHHHHhhhhhhhhhcCCCCccc---cccCCHHHHhhcC--CEEEEccCCCc
Q 022672           96 --FKM-------NLIYYDLYQ---ATR--LEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLREA--DVISLHPVLDK  156 (294)
Q Consensus        96 --~g~-------~V~~~d~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~a--DiV~l~~Plt~  156 (294)
                        .|.       +++.+|+..   ..+  .......|..    .......+   ....+|.|+++.+  |+++=+-    
T Consensus       319 ~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~----~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S----  390 (563)
T PRK13529        319 VREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYAR----KREELADWDTEGDVISLLEVVRNVKPTVLIGVS----  390 (563)
T ss_pred             HHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhh----hcccccccccccCCCCHHHHHhccCCCEEEEec----
Confidence              466       789998762   111  1111111211    11000001   1225899999988  8887543    


Q ss_pred             cccccccHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--cCC-cceEEeeCCCCCCCC-C---CCccCCCCeEEc
Q 022672          157 TTYHLINKERLATMKK---EAILVNCSRGPVIDEVALVEHLK--QNP-MFRVGLDVFEDEPYM-K---PGLSEMKNAIVV  226 (294)
Q Consensus       157 ~t~~li~~~~l~~mk~---gailIN~aRG~~vd~~aL~~aL~--~g~-i~ga~lDV~~~EP~~-~---~~L~~~~nviiT  226 (294)
                      ..-+.++++.++.|.+   ..++.=.|+...--|-.-.+|.+  +|+ |.+.+.   .-.|.. +   ..--+..|+++-
T Consensus       391 ~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs---pf~pv~~~G~~~~p~Q~NN~~iF  467 (563)
T PRK13529        391 GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS---PFAPVEYNGKTYPIGQCNNAYIF  467 (563)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC---CCCCeeeCCeEeccCcCcceeec
Confidence            2357899999999987   89999999877633333333333  454 333332   112211 0   112356889999


Q ss_pred             cCCCCCc-----HHHHHHHHHHHHHHHHHHHc
Q 022672          227 PHIASAS-----KWTREGMATLAALNVLGKIK  253 (294)
Q Consensus       227 PHia~~t-----~~~~~~~~~~~~~nl~~~~~  253 (294)
                      |=++-..     ..-.+.|...+++-+.+...
T Consensus       468 PGiglGa~~~~a~~Itd~m~~aAA~alA~~v~  499 (563)
T PRK13529        468 PGLGLGVIASGARRVTDGMLMAAAHALADCVP  499 (563)
T ss_pred             ccchhhhhhcCCcCCCHHHHHHHHHHHHhhCc
Confidence            9876321     11235566666666666554

>PRK06349 homoserine dehydrogenase; Provisional

Probab=94.45  E-value=0.19  Score=48.66  Aligned_cols=108  Identities=12%  Similarity=0.119  Sum_probs=61.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhc---------CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEG---------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  143 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~---------~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  143 (294)
                      -+|||+|+|.||+.+++.|.+.         .+.++. ++|++.... ..             ..........++++++.
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~~-------------~~~~~~~~~~d~~~ll~   69 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD-RG-------------VDLPGILLTTDPEELVN   69 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc-cC-------------CCCcccceeCCHHHHhh
Confidence            3799999999999998876321         245654 456654321 00             00011223468999995


Q ss_pred             --cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccC-HHHHHHHHHcCCc
Q 022672          144 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID-EVALVEHLKQNPM  199 (294)
Q Consensus       144 --~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd-~~aL~~aL~~g~i  199 (294)
                        +.|+|+.+++......    .-..+.|+.|.-+|-..-.-... -+.|.++.++...
T Consensus        70 d~~iDvVve~tg~~~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv  124 (426)
T PRK06349         70 DPDIDIVVELMGGIEPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV  124 (426)
T ss_pred             CCCCCEEEECCCCchHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence              4699998886422111    22235566676666443322222 3557776666554

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=94.40  E-value=0.058  Score=50.64  Aligned_cols=34  Identities=24%  Similarity=0.423  Sum_probs=30.0

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      ||||||-|..|+.+++.+ +.+|++|+++|+.+..
T Consensus         1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~~   34 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDANS   34 (352)
T ss_pred             CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCCC
Confidence            599999999999999985 7899999999987543

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=94.40  E-value=0.19  Score=46.50  Aligned_cols=68  Identities=25%  Similarity=0.444  Sum_probs=44.1

Q ss_pred             CEEEEEcCChHHH-HHHHHHhhcCC--CEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCE
Q 022672           74 QTVGVIGAGRIGS-AYARMMVEGFK--MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  147 (294)
Q Consensus        74 ktvGIIGlG~IG~-~vA~~L~~~~g--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi  147 (294)
                      .++||||+|.+++ ..+..+ ...+  +.++ .+|++... .+.+.+.++          .. ..+.+++++++.  .|+
T Consensus         4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~~----------~~-~~~~~~~~ll~~~~iD~   70 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEFG----------IA-KAYTDLEELLADPDIDA   70 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHcC----------CC-cccCCHHHHhcCCCCCE
Confidence            4799999997775 466665 4554  4544 56887654 233332221          11 245789999976  489


Q ss_pred             EEEccCC
Q 022672          148 ISLHPVL  154 (294)
Q Consensus       148 V~l~~Pl  154 (294)
                      |+++.|.
T Consensus        71 V~Iatp~   77 (342)
T COG0673          71 VYIATPN   77 (342)
T ss_pred             EEEcCCC
Confidence            9999993

>PRK15076 alpha-galactosidase; Provisional

Probab=94.39  E-value=0.19  Score=48.80  Aligned_cols=77  Identities=14%  Similarity=0.096  Sum_probs=47.6

Q ss_pred             CEEEEEcCChHHHHHHH--HHh--hcC-CCEEEEEcCCchhHH--HHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           74 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~--~L~--~~~-g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      ++|+|||.|.+|...+-  .++  .++ +.+|+.+|.......  .....    ...........+....++.+.+++||
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~----~~~~~~~~~~~i~~ttD~~eal~dAD   77 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVAR----KLAESLGASAKITATTDRREALQGAD   77 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHH----HHHHhcCCCeEEEEECCHHHHhCCCC
Confidence            47999999999955443  222  344 459999998764422  11111    11111122233444678889999999


Q ss_pred             EEEEccCC
Q 022672          147 VISLHPVL  154 (294)
Q Consensus       147 iV~l~~Pl  154 (294)
                      +|+.+.-.
T Consensus        78 fVv~ti~v   85 (431)
T PRK15076         78 YVINAIQV   85 (431)
T ss_pred             EEeEeeee
Confidence            99888754

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=94.37  E-value=0.31  Score=45.45  Aligned_cols=110  Identities=19%  Similarity=0.160  Sum_probs=58.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCC-------EEEEEcCCchh--HHHHHHhhhhhhhhhcC-CCCccccccCCHHHHh
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell  142 (294)
                      ++|+|||. |.+|..+|-.|. ..+.       ++..+|.....  ......+     +.... ..........+..+.+
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D-----l~~~~~~~~~~~~i~~~~~~~~   76 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIA-SGEMFGPDQPVILQLLELPQALKALEGVAME-----LEDCAFPLLAEIVITDDPNVAF   76 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHH-hccccCCCCceEEEEEecCCcccccceeehh-----hhhccccccCceEEecCcHHHh
Confidence            48999999 999999998764 3333       78899984322  1111111     00000 0000011123456778


Q ss_pred             hcCCEEEEccCCCc---cccc-cc--cH-------HHHhcCC-CCcEEEEcCCCcccCHHHHH
Q 022672          143 READVISLHPVLDK---TTYH-LI--NK-------ERLATMK-KEAILVNCSRGPVIDEVALV  191 (294)
Q Consensus       143 ~~aDiV~l~~Plt~---~t~~-li--~~-------~~l~~mk-~gailIN~aRG~~vd~~aL~  191 (294)
                      ++||+|+++.-...   +|+- ++  |.       ..+.... |.+++|.++  ..+|.-.-+
T Consensus        77 ~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~  137 (322)
T cd01338          77 KDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI  137 (322)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence            99999998875321   1211 01  11       1222334 588899886  556655533

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=94.35  E-value=2.2  Score=40.11  Aligned_cols=78  Identities=12%  Similarity=0.077  Sum_probs=47.1

Q ss_pred             c-CCCEEEEEcCC-------hHHHHHHHHHhhcCCCEEEEEcC-CchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 022672           71 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  141 (294)
Q Consensus        71 l-~gktvGIIGlG-------~IG~~vA~~L~~~~g~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  141 (294)
                      + .|++|+|++.|       ++.++++..+ ..||++|.+..| ..-...+.+.+..-......+   ..+....++++.
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea  241 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQNAAESG---GSLTVSHDIDSA  241 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            6 78999887644       6788888876 579999999988 321111111110000011111   223445799999


Q ss_pred             hhcCCEEEEcc
Q 022672          142 LREADVISLHP  152 (294)
Q Consensus       142 l~~aDiV~l~~  152 (294)
                      ++++|+|..-.
T Consensus       242 ~~~aDvvy~~~  252 (335)
T PRK04523        242 YAGADVVYAKS  252 (335)
T ss_pred             hCCCCEEEece
Confidence            99999996643

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.34  E-value=0.2  Score=48.56  Aligned_cols=116  Identities=14%  Similarity=0.165  Sum_probs=67.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      +.+|++.|+|.|.+|.++|+.| ...|.+|.++|...... ..+        +.... ..+....-..-++.+.++|+|+
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~~~~~--------l~~~~-~gi~~~~g~~~~~~~~~~d~vv   72 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPERVAQ--------IGKMF-DGLVFYTGRLKDALDNGFDILA   72 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCchhHHH--------Hhhcc-CCcEEEeCCCCHHHHhCCCEEE
Confidence            5689999999999999999987 68999999999765321 111        11100 0111111111234557899988


Q ss_pred             EccCCCcccc----------cccc-HHHHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          150 LHPVLDKTTY----------HLIN-KERLAT-MK---KEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       150 l~~Plt~~t~----------~li~-~~~l~~-mk---~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ...--.++..          .++. .+++.. ++   ...+-|--+.|+.--..=+...|+.
T Consensus        73 ~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~  134 (445)
T PRK04308         73 LSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK  134 (445)
T ss_pred             ECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            7654433221          1222 233333 32   2345555567887777767777765

>PRK06128 oxidoreductase; Provisional

Probab=94.24  E-value=0.19  Score=45.81  Aligned_cols=36  Identities=25%  Similarity=0.226  Sum_probs=30.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      .+.||++.|.|. |.||+++|+.|+ ..|++|+...+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~-~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFA-REGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHH-HcCCEEEEEeCC
Confidence            488999999987 899999999984 679998876543

>PRK06701 short chain dehydrogenase; Provisional

Probab=94.12  E-value=0.18  Score=45.86  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      ..+.||++.|.|. |.||..+|+.|+ ..|++|+.++++..
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~-~~G~~V~l~~r~~~   81 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFA-KEGADIAIVYLDEH   81 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence            3688999999986 889999999984 67999998887643

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=94.11  E-value=0.15  Score=46.93  Aligned_cols=108  Identities=22%  Similarity=0.248  Sum_probs=68.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhh-hhhhc-CCCCccccc----------cC
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ-FLKAN-GEQPVTWKR----------AS  136 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~----------~~  136 (294)
                      ......++-++|+|-+|-..+-. +.-.|+-|..+|-+.....+.  ...+. ++... ....-++..          ..
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiat-a~~lG~iVt~rdlrm~~Keqv--~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~  236 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIAT-AVRLGAIVTARDLRMFKKEQV--ESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAE  236 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHH-HhhcceEEehhhhhhHHhhhh--hhcccccccccccccCCCccccCCHHHHHHHHH
Confidence            35677888999999999888765 467899999988765432111  00000 00000 000011111          12


Q ss_pred             CHHHHhhcCCEEEEc--cCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          137 SMDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       137 ~l~ell~~aDiV~l~--~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      -+.+..++.|+|+..  +|.. ..-.++.+++.+.||||+++|+.+
T Consensus       237 ~~a~~~~~~DivITTAlIPGr-pAP~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         237 LVAEQAKEVDIVITTALIPGR-PAPKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHHHHhcCCCEEEEecccCCC-CCchhhHHHHHHhcCCCcEEEEeh
Confidence            255667899999654  5643 356788999999999999999984

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.06  E-value=0.13  Score=49.24  Aligned_cols=100  Identities=21%  Similarity=0.181  Sum_probs=58.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-HH-----------HhhhhhhhhhcCCCCcccc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-KF-----------VTAYGQFLKANGEQPVTWK  133 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~~-----------~~~~~~~~~~~~~~~~~~~  133 (294)
                      ..|.+++|.|||+|.+|..+|+.|+ ..|+ ++..+|...-..  +. .+           .+...+.+.... ..+...
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v~i~  115 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEIN-PLVNVR  115 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhC-CCcEEE
Confidence            3589999999999999999999985 5565 677887542110  00 00           000001111111 111111


Q ss_pred             ------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCC
Q 022672          134 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  171 (294)
Q Consensus       134 ------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk  171 (294)
                            ...+..++++++|+|+.|.- +.+++.++|+...+.-+
T Consensus       116 ~~~~~i~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~  158 (392)
T PRK07878        116 LHEFRLDPSNAVELFSQYDLILDGTD-NFATRYLVNDAAVLAGK  158 (392)
T ss_pred             EEeccCChhHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence                  11235678899999988764 56778788776655433

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.04  E-value=0.14  Score=49.38  Aligned_cols=70  Identities=14%  Similarity=0.107  Sum_probs=50.8

Q ss_pred             CcccCCCEEEEEcC----------ChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccC
Q 022672           68 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS  136 (294)
Q Consensus        68 g~~l~gktvGIIGl----------G~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (294)
                      +.++.|++|+|+|+          ..-...+++.| ...| .+|.+|||........            ...   .....
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~------------~~~---~~~~~  378 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKK------------LDG---LVTLV  378 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhh------------ccC---ceeeC
Confidence            45689999999998          44677899988 5675 9999999975321000            000   01236


Q ss_pred             CHHHHhhcCCEEEEccC
Q 022672          137 SMDEVLREADVISLHPV  153 (294)
Q Consensus       137 ~l~ell~~aDiV~l~~P  153 (294)
                      ++++.+++||.|+++.+
T Consensus       379 ~~~~~~~~ad~vvi~t~  395 (415)
T PRK11064        379 SLDEALATADVLVMLVD  395 (415)
T ss_pred             CHHHHHhCCCEEEECCC
Confidence            88999999999999987

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=93.99  E-value=0.13  Score=45.06  Aligned_cols=71  Identities=15%  Similarity=0.192  Sum_probs=46.8

Q ss_pred             EEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhH-HHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhcCCEEEEc
Q 022672           76 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        76 vGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      |.|+|. |.+|+.+++.|. .-+.+|.+.-|...+. ...+.        ..+..-  ..+...++|.+.++.+|.|+++
T Consensus         1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~l~--------~~g~~vv~~d~~~~~~l~~al~g~d~v~~~   71 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQLQ--------ALGAEVVEADYDDPESLVAALKGVDAVFSV   71 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHHHH--------HTTTEEEES-TT-HHHHHHHHTTCSEEEEE
T ss_pred             CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhhhh--------cccceEeecccCCHHHHHHHHcCCceEEee
Confidence            678996 999999999985 5788888877765432 22211        111111  1122335678889999999999


Q ss_pred             cCCC
Q 022672          152 PVLD  155 (294)
Q Consensus       152 ~Plt  155 (294)
                      +|..
T Consensus        72 ~~~~   75 (233)
T PF05368_consen   72 TPPS   75 (233)
T ss_dssp             SSCS
T ss_pred             cCcc
Confidence            9854

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=93.96  E-value=0.32  Score=45.70  Aligned_cols=96  Identities=16%  Similarity=0.222  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  150 (294)
                      .|++|.|.|.|.+|...++. ++.+|.+|++.+.+.....+ ....+       +.... .......+.++....|+|+-
T Consensus       183 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~vi~~~~~~~~~~~-~~~~~-------Ga~~vi~~~~~~~~~~~~~~~D~vid  253 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKI-GKAFGLKVTVISSSSNKEDE-AINRL-------GADSFLVSTDPEKMKAAIGTMDYIID  253 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCcchhhh-HHHhC-------CCcEEEcCCCHHHHHhhcCCCCEEEE
Confidence            58899999999999999987 58999998887765433211 11111       11000 00000123333345788887


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      ++.. +.+   + .+.++.++++..+|.++.
T Consensus       254 ~~g~-~~~---~-~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        254 TVSA-VHA---L-GPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             CCCC-HHH---H-HHHHHHhcCCcEEEEeCC
Confidence            7641 111   2 446677888888887753

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=93.92  E-value=0.15  Score=47.31  Aligned_cols=32  Identities=28%  Similarity=0.374  Sum_probs=26.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcC-CCEEEEEcC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDL  105 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~-g~~V~~~d~  105 (294)
                      .+|||=|||+||+.++|.+...- .++|++.+-
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd   34 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND   34 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence            37999999999999999975455 599998765

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.88  E-value=0.24  Score=45.43  Aligned_cols=87  Identities=14%  Similarity=0.085  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .|+++.|+|.|.||...++. ++.+|++ |++.|...... +..           ...  ..  ...-++.-...|+|+-
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~-ak~~G~~~v~~~~~~~~rl-~~a-----------~~~--~~--i~~~~~~~~g~Dvvid  206 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARL-TKAAGGSPPAVWETNPRRR-DGA-----------TGY--EV--LDPEKDPRRDYRAIYD  206 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHH-HHHcCCceEEEeCCCHHHH-Hhh-----------hhc--cc--cChhhccCCCCCEEEE
Confidence            57789999999999999987 4789997 55566644321 110           000  00  0111111235788887


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +... +.+   + ...++.|+++..++.++
T Consensus       207 ~~G~-~~~---~-~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       207 ASGD-PSL---I-DTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             CCCC-HHH---H-HHHHHhhhcCcEEEEEe
Confidence            7652 111   1 45677788888888764

>PTZ00325 malate dehydrogenase; Provisional

Probab=93.87  E-value=0.18  Score=47.08  Aligned_cols=77  Identities=25%  Similarity=0.310  Sum_probs=46.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcccccc---CCHHHHhhc
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLRE  144 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~  144 (294)
                      .+..++|+|+|. |.||..+|..|+. +..-++..+|......  ...+     +..... .......   .+..+.+++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g--~a~D-----l~~~~~-~~~v~~~td~~~~~~~l~g   76 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG--VAAD-----LSHIDT-PAKVTGYADGELWEKALRG   76 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc--cccc-----hhhcCc-CceEEEecCCCchHHHhCC
Confidence            467789999999 9999999988731 4455899999832111  0001     001011 1111111   223678899


Q ss_pred             CCEEEEccCC
Q 022672          145 ADVISLHPVL  154 (294)
Q Consensus       145 aDiV~l~~Pl  154 (294)
                      ||+|++++-.
T Consensus        77 aDvVVitaG~   86 (321)
T PTZ00325         77 ADLVLICAGV   86 (321)
T ss_pred             CCEEEECCCC
Confidence            9999887753

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.86  E-value=0.34  Score=46.81  Aligned_cols=114  Identities=19%  Similarity=0.138  Sum_probs=64.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ++.++++.|+|+|..|++.++.| +..|.+|.++|.........       .+. .+   .....-..-.+.++..|+|+
T Consensus         3 ~~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~~~~~~-------~l~-~g---~~~~~~~~~~~~~~~~d~vv   70 (438)
T PRK03806          3 DYQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRITPPGLD-------KLP-EN---VERHTGSLNDEWLLAADLIV   70 (438)
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCCchhHH-------HHh-cC---CEEEeCCCCHHHhcCCCEEE
Confidence            35688999999999999999876 68899999999754321000       010 01   11111111224466788765


Q ss_pred             EccCCCccccc-----------cccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          150 LHPVLDKTTYH-----------LINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       150 l~~Plt~~t~~-----------li~~-~~l~~-mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ...- -+....           ++.+ +.+.. ++...+-|--+.|+.--..-|.+.|+.
T Consensus        71 ~spg-i~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  129 (438)
T PRK03806         71 ASPG-IALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  129 (438)
T ss_pred             ECCC-CCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            5442 222221           2222 33333 332344455567887777767777764

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=93.85  E-value=2.7  Score=38.99  Aligned_cols=75  Identities=15%  Similarity=0.185  Sum_probs=49.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.|++|++||- +++.++++..+ ..+|++|....|..-.  +...+..-......+    .+....++++.++++|+|
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~--~~~~~~~~~~~~~~g----~i~~~~d~~~av~~aDvv  222 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAK--ENIHAQTVERAKKKG----TLSWEMNLHKAVSHADYV  222 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCcc--HHHHHHHHHHHHhcC----CeEEEeCHHHHhCCCCEE
Confidence            478999999998 68899988876 5799999998875421  111000000011111    123347899999999999


Q ss_pred             EEc
Q 022672          149 SLH  151 (294)
Q Consensus       149 ~l~  151 (294)
                      ..-
T Consensus       223 y~d  225 (311)
T PRK14804        223 YTD  225 (311)
T ss_pred             Eee
Confidence            773

>PRK10206 putative oxidoreductase; Provisional

Probab=93.84  E-value=0.2  Score=47.07  Aligned_cols=67  Identities=13%  Similarity=0.201  Sum_probs=41.6

Q ss_pred             EEEEEcCChHHHH-HHHHHhhc-CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 022672           75 TVGVIGAGRIGSA-YARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  149 (294)
Q Consensus        75 tvGIIGlG~IG~~-vA~~L~~~-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  149 (294)
                      ++||||+|.|++. .+..+... -++++. ++|+.....  .+.+.+       +    ....+.+++++++  +.|+|+
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~-------~----~~~~~~~~~ell~~~~iD~V~   69 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIY-------S----HIHFTSDLDEVLNDPDVKLVV   69 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH--HHHHhc-------C----CCcccCCHHHHhcCCCCCEEE
Confidence            6999999998763 34433222 367876 478765321  211111       1    1124578999995  579999


Q ss_pred             EccCC
Q 022672          150 LHPVL  154 (294)
Q Consensus       150 l~~Pl  154 (294)
                      +++|.
T Consensus        70 I~tp~   74 (344)
T PRK10206         70 VCTHA   74 (344)
T ss_pred             EeCCc
Confidence            99993

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=93.84  E-value=0.23  Score=53.17  Aligned_cols=107  Identities=9%  Similarity=0.108  Sum_probs=65.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHH--h--------hh----hhh-hhhcCCCCccc---
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV--T--------AY----GQF-LKANGEQPVTW---  132 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~--~--------~~----~~~-~~~~~~~~~~~---  132 (294)
                      +.-.++.|+|.|++|+..++.+ .++|++ . .++..-..+....  .        .|    ..+ ........-.+   
T Consensus       201 v~P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~  277 (1042)
T PLN02819        201 ICPLVFVFTGSGNVSQGAQEIF-KLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA  277 (1042)
T ss_pred             CCCeEEEEeCCchHHHHHHHHH-hhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence            3457899999999999999885 788888 2 3332211111000  0        00    000 00000000000   


Q ss_pred             -------cccCC-HHHHhhcCCEEEEccCCCccccccccHH-HHhcCCCCc----EEEEcC
Q 022672          133 -------KRASS-MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEA----ILVNCS  180 (294)
Q Consensus       133 -------~~~~~-l~ell~~aDiV~l~~Plt~~t~~li~~~-~l~~mk~ga----ilIN~a  180 (294)
                             .+... +++.++.+|+++.|+-..+.+-.++.++ +.+.||+|.    ++++++
T Consensus       278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence                   01111 4578899999999998777788999888 778999998    888875

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=93.84  E-value=0.36  Score=46.83  Aligned_cols=96  Identities=11%  Similarity=0.123  Sum_probs=60.3

Q ss_pred             CcccCCCEEEEEcC----------ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 022672           68 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  137 (294)
Q Consensus        68 g~~l~gktvGIIGl----------G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (294)
                      +..+.|++|+|+|+          ..-+..+++.| ...|.+|.+|||........  ..            .+   ...
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L-~~~g~~V~~~DP~v~~~~~~--~~------------~~---~~~  370 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKEL-GKYSCKVDIFDPWVDAEEVR--RE------------YG---IIP  370 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHH-HhCCCEEEEECCCCChhHHH--Hh------------cC---ccc
Confidence            34689999999998          45678899987 67899999999974321100  00            00   011


Q ss_pred             HHH-HhhcCCEEEEccCCCccccccccHHHH-hcCCCCcEEEEcCCCcc
Q 022672          138 MDE-VLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPV  184 (294)
Q Consensus       138 l~e-ll~~aDiV~l~~Plt~~t~~li~~~~l-~~mk~gailIN~aRG~~  184 (294)
                      +++ .++.+|.|+++.. -++-+. ++-+.+ +.||...++|++ |+-+
T Consensus       371 ~~~~~~~~ad~vvi~t~-h~~f~~-~~~~~~~~~~~~~~~iiD~-r~~~  416 (425)
T PRK15182        371 VSEVKSSHYDAIIVAVG-HQQFKQ-MGSEDIRGFGKDKHVLYDL-KYVL  416 (425)
T ss_pred             chhhhhcCCCEEEEccC-CHHhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence            222 3678999999987 333333 443433 445545688884 5544

>PLN00106 malate dehydrogenase

Probab=93.83  E-value=0.18  Score=47.01  Aligned_cols=105  Identities=22%  Similarity=0.269  Sum_probs=60.5

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccc---cccCCHHHHhhcC
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLREA  145 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~a  145 (294)
                      ...++|+|+|. |.+|..+|..|+. +..-++..+|......  ...+     +.... .....   ...+++.+.+++|
T Consensus        16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g--~a~D-----l~~~~-~~~~i~~~~~~~d~~~~l~~a   87 (323)
T PLN00106         16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPG--VAAD-----VSHIN-TPAQVRGFLGDDQLGDALKGA   87 (323)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCe--eEch-----hhhCC-cCceEEEEeCCCCHHHHcCCC
Confidence            44579999999 9999999998742 3444899999765111  0001     00000 01111   1234567889999


Q ss_pred             CEEEEccCCCcc---cccc-c--c----H---HHHhcCCCCcEEEEcCCCc
Q 022672          146 DVISLHPVLDKT---TYHL-I--N----K---ERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       146 DiV~l~~Plt~~---t~~l-i--~----~---~~l~~mk~gailIN~aRG~  183 (294)
                      |+|+++.-....   ++.- +  |    +   +.+....|.+++++++-.-
T Consensus        88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv  138 (323)
T PLN00106         88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV  138 (323)
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            999887653221   1111 1  1    1   2233345889999987644

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=93.82  E-value=0.79  Score=42.02  Aligned_cols=105  Identities=16%  Similarity=0.129  Sum_probs=68.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      |++++|||--.=-..+++.| ...|++|..|.-.....               +  -.+.....+.++.++++|+|++=+
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l-~~~g~~v~~~g~~~~~~---------------~--~~~~~~~~~~~~~~~~~~~~i~p~   62 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKL-EELDAKISLIGFDQLED---------------G--FTGAVKCELLELDLTTLDVVILPV   62 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHH-HHCCCEEEEEecccccc---------------c--cccceeecchhhhhccCCEEEECC
Confidence            68999999888888889988 57888876654211000               0  001223345566689999999999


Q ss_pred             CCCcccc----------ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          153 VLDKTTY----------HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       153 Plt~~t~----------~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      |.+.+..          -.++++.++.|++++++ -++    ++..++-++.++..|.
T Consensus        63 ~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~~-~~G----~~~~~l~~~a~~~gi~  115 (287)
T TIGR02853        63 PGTSHDGKVATVFSNEKVVLTPELLESTKGHCTI-YVG----ISNPYLEQLAADAGVK  115 (287)
T ss_pred             ccccCCceEecccccCCccccHHHHHhcCCCCEE-EEe----cCCHHHHHHHHHCCCe
Confidence            9766532          12568899999986653 343    4445565566665554

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=93.80  E-value=0.37  Score=47.78  Aligned_cols=105  Identities=18%  Similarity=0.119  Sum_probs=67.8

Q ss_pred             CcccCCCEEEEEcC---ChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 022672           68 GNLLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  143 (294)
Q Consensus        68 g~~l~gktvGIIGl---G~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  143 (294)
                      |..+.|++|++||-   +++.++++..+ ..|| ++|....|..-...+.+.+.    +...   +..+....++++.++
T Consensus       169 G~~l~glkVa~vGD~~~~rva~Sl~~~l-~~~g~~~v~l~~P~~~~~p~~~~~~----a~~~---G~~v~i~~d~~eav~  240 (525)
T PRK13376        169 NFDNSFIHIALVGDLLHGRTVHSKVNGL-KIFKNVKVDLIAPEELAMPEHYVEK----MKKN---GFEVRIFSSIEEYLS  240 (525)
T ss_pred             CCCcCCCEEEEECCCCCCcHHHHHHHHH-HhcCCcEEEEECCccccCCHHHHHH----HHHc---CCeEEEEcCHHHHhc
Confidence            33588999999998   58999999876 5788 99988877432111222111    1111   122344578999999


Q ss_pred             cCCEE--EE-------ccCCC--c---c--ccccccHHHHhcCCCCcEEEEcC
Q 022672          144 EADVI--SL-------HPVLD--K---T--TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       144 ~aDiV--~l-------~~Plt--~---~--t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ++|+.  ..       .....  +   +  -...++++.++.+|++++|..+.
T Consensus       241 ~AD~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        241 QKDVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             cCCccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence            99952  22       12110  0   0  13446889999999999999884

>PRK07877 hypothetical protein; Provisional

Probab=93.76  E-value=0.12  Score=53.15  Aligned_cols=97  Identities=16%  Similarity=0.184  Sum_probs=59.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchh--HHHHH-----------HhhhhhhhhhcCCCCcccc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQAT--RLEKF-----------VTAYGQFLKANGEQPVTWK  133 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~  133 (294)
                      ..|.+++|+|+|+| +|..+|..|+ ..|.  +++.+|...-.  .+.+.           .+...+.+.... ..+.+.
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~in-p~i~v~  179 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELD-PYLPVE  179 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHC-CCCEEE
Confidence            36999999999999 9999999985 4553  67766643110  00000           000011111111 111111


Q ss_pred             ------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhc
Q 022672          134 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  169 (294)
Q Consensus       134 ------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~  169 (294)
                            ...+++++++++|+|+-|+- +-+++.++++...+.
T Consensus       180 ~~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~  220 (722)
T PRK07877        180 VFTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR  220 (722)
T ss_pred             EEeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence                  12468889999999999997 578899998777664

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=93.71  E-value=0.54  Score=42.78  Aligned_cols=36  Identities=17%  Similarity=0.163  Sum_probs=30.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  109 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~  109 (294)
                      ++++.|+|.|..+++++-.| ...|+ +|++++|+.+.
T Consensus       122 ~~~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~~  158 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAAL-RDAGFTDGTIVARNEKT  158 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHH
Confidence            57899999999999999987 46787 59999998654

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.71  E-value=0.36  Score=45.06  Aligned_cols=96  Identities=18%  Similarity=0.210  Sum_probs=57.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHH--HhhcCC
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREAD  146 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e--ll~~aD  146 (294)
                      ..|++|.|+|.|.+|...++.+ +..|++|++++++.  ....+ +...+       +...+.. ...++.+  .....|
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~a-k~~G~~vi~~~~~~~~~~~~~-~~~~~-------Ga~~v~~-~~~~~~~~~~~~~~d  240 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLL-RLRGFEVYVLNRRDPPDPKAD-IVEEL-------GATYVNS-SKTPVAEVKLVGEFD  240 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHH-HHHHc-------CCEEecC-CccchhhhhhcCCCC
Confidence            3688999999999999999874 78999999998742  12211 11111       1110100 0111111  224578


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +|+-++.. +.   .+ .+.++.|+++..++.++.
T Consensus       241 ~vid~~g~-~~---~~-~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         241 LIIEATGV-PP---LA-FEALPALAPNGVVILFGV  270 (355)
T ss_pred             EEEECcCC-HH---HH-HHHHHHccCCcEEEEEec
Confidence            88888752 11   12 556777888888877653

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.64  E-value=0.4  Score=45.13  Aligned_cols=37  Identities=24%  Similarity=0.334  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  109 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~  109 (294)
                      .|++|.|.|.|.+|...++. ++..|+ +|++.+++...
T Consensus       191 ~g~~VlV~G~G~vG~~a~~l-ak~~G~~~Vi~~~~~~~r  228 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLG-AVAAGASQVVAVDLNEDK  228 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCcEEEEcCCHHH
Confidence            57899999999999999887 488999 68888876543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.58  E-value=0.16  Score=49.68  Aligned_cols=111  Identities=24%  Similarity=0.314  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .||+|+|+|+|.-|.++|+.| .. |++|+++|....... ...+     +..   ..  .....+ .+.+.++|+|+..
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L-~~-g~~v~v~D~~~~~~~-~~~~-----~~~---~~--~~~~~~-~~~~~~~d~vV~S   70 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEEL-QN-KYDVIVYDDLKANRD-IFEE-----LYS---KN--AIAALS-DSRWQNLDKIVLS   70 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHH-hC-CCEEEEECCCCCchH-HHHh-----hhc---Cc--eeccCC-hhHhhCCCEEEEC
Confidence            478999999999999999998 45 999999995433211 1000     000   00  001112 3456789998776


Q ss_pred             cCCCccc----------cccccH-HHH-hcCCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 022672          152 PVLDKTT----------YHLINK-ERL-ATMKK-EAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       152 ~Plt~~t----------~~li~~-~~l-~~mk~-gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      .--.+..          ..++.+ +++ ..+++ ..+=|--+.|+.--..-|.+.|+.
T Consensus        71 PgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~  128 (454)
T PRK01368         71 PGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS  128 (454)
T ss_pred             CCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence            5332221          123333 232 33333 234454567887777777777765

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=93.56  E-value=0.36  Score=45.82  Aligned_cols=95  Identities=17%  Similarity=0.247  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  150 (294)
                      .|++|.|.|.|.+|...++. ++.+|++|++.+...+...+. ...+       +.... .......+.+.....|+|+-
T Consensus       178 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~Vi~~~~~~~~~~~~-a~~l-------Ga~~~i~~~~~~~v~~~~~~~D~vid  248 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKI-GKAFGLRVTVISRSSEKEREA-IDRL-------GADSFLVTTDSQKMKEAVGTMDFIID  248 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHH-HHHcCCeEEEEeCChHHhHHH-HHhC-------CCcEEEcCcCHHHHHHhhCCCcEEEE
Confidence            58899999999999999987 589999999887654332111 1111       11000 00000112233345688887


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +... +.+   + ...++.++++..++.++
T Consensus       249 ~~G~-~~~---~-~~~~~~l~~~G~iv~vG  273 (375)
T PLN02178        249 TVSA-EHA---L-LPLFSLLKVSGKLVALG  273 (375)
T ss_pred             CCCc-HHH---H-HHHHHhhcCCCEEEEEc
Confidence            7642 111   1 44566778888888775

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=93.53  E-value=0.89  Score=44.28  Aligned_cols=116  Identities=16%  Similarity=0.092  Sum_probs=65.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhc--C----C--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEG--F----K--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  144 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~--~----g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  144 (294)
                      -+|+|||. |.+|..+|-.|+.+  |    +  -+++.+|...+.......+-... ..... ..  .....+-.+.+++
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~da-a~~~~-~~--v~i~~~~ye~~kd  176 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDS-LYPLL-RE--VSIGIDPYEVFQD  176 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHh-hhhhc-Cc--eEEecCCHHHhCc
Confidence            37999999 99999999887532  2    2  37888898766543322221110 00000 11  1111234577899


Q ss_pred             CCEEEEccCCCcccccc-----c--cH-------HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          145 ADVISLHPVLDKTTYHL-----I--NK-------ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~l-----i--~~-------~~l~~-mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ||+|++..-. +...++     +  |.       +.+.. -.|++++|.++  ..+|.-..+-.-.+
T Consensus       177 aDiVVitAG~-prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s  240 (444)
T PLN00112        177 AEWALLIGAK-PRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA  240 (444)
T ss_pred             CCEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence            9999988753 222221     1  11       12333 46789999886  56666665443333

>PLN02214 cinnamoyl-CoA reductase

Probab=93.50  E-value=0.23  Score=46.31  Aligned_cols=79  Identities=15%  Similarity=0.098  Sum_probs=49.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCC----CCccccccCCHHHHhhc
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE----QPVTWKRASSMDEVLRE  144 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~ell~~  144 (294)
                      .+.+++|.|.|. |.||+.+++.| ..-|.+|.+.++............    +.....    ...+.....+++++++.
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~Dl~d~~~~~~~~~~   81 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRE----LEGGKERLILCKADLQDYEALKAAIDG   81 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHH----hhCCCCcEEEEecCcCChHHHHHHHhc
Confidence            467899999998 99999999998 467999998887643211110000    000000    00111223457788899


Q ss_pred             CCEEEEccC
Q 022672          145 ADVISLHPV  153 (294)
Q Consensus       145 aDiV~l~~P  153 (294)
                      +|+|+-+..
T Consensus        82 ~d~Vih~A~   90 (342)
T PLN02214         82 CDGVFHTAS   90 (342)
T ss_pred             CCEEEEecC
Confidence            999877764

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.50  E-value=0.24  Score=50.37  Aligned_cols=93  Identities=19%  Similarity=0.164  Sum_probs=56.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH----HhhcCCEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREADVI  148 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~aDiV  148 (294)
                      ..++-|+|+|++|+.+|+.| +..|.++++.|.+++.. +...        ..+. ..-+-...+.+-    -++++|.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~~~--------~~g~-~v~~GDat~~~~L~~agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDHI-ETLR--------KFGM-KVFYGDATRMDLLESAGAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHHH-HHHH--------hcCC-eEEEEeCCCHHHHHhcCCCcCCEE
Confidence            46799999999999999998 68899999999876542 2211        1111 111111122221    24689999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEE
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVN  178 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN  178 (294)
                      +++.+..+.+..+  ....+.+.|+..++-
T Consensus       469 vv~~~d~~~n~~i--~~~ar~~~p~~~iia  496 (621)
T PRK03562        469 INAIDDPQTSLQL--VELVKEHFPHLQIIA  496 (621)
T ss_pred             EEEeCCHHHHHHH--HHHHHHhCCCCeEEE
Confidence            9999754444333  334444556655543

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=93.50  E-value=1.7  Score=40.34  Aligned_cols=101  Identities=20%  Similarity=0.190  Sum_probs=56.6

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-HH-----------HhhhhhhhhhcCCCCcccc----cc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-KF-----------VTAYGQFLKANGEQPVTWK----RA  135 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~~-----------~~~~~~~~~~~~~~~~~~~----~~  135 (294)
                      +|.|||+|.+|.++++.|+ -.|+ ++..+|...-..  +. .+           .+...+.+.... ..+...    ..
T Consensus         1 kVlIVGaGGlG~EiaKnLa-l~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lN-p~v~V~~~~~~i   78 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLV-LTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFN-PNVKIVAYHANI   78 (312)
T ss_pred             CEEEECCCHHHHHHHHHHH-HhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHC-CCCeEEEEeccC
Confidence            4899999999999999985 4565 577777542110  00 00           000011111111 111111    11


Q ss_pred             C---CHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          136 S---SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       136 ~---~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .   ...+++++.|+|+.++- +.+++..+++-....   +.-+|+.+.
T Consensus        79 ~~~~~~~~f~~~~DvVv~a~D-n~~ar~~in~~c~~~---~ip~I~~gt  123 (312)
T cd01489          79 KDPDFNVEFFKQFDLVFNALD-NLAARRHVNKMCLAA---DVPLIESGT  123 (312)
T ss_pred             CCccchHHHHhcCCEEEECCC-CHHHHHHHHHHHHHC---CCCEEEEec
Confidence            1   13478899999999985 566777777665543   344777653

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK06114 short chain dehydrogenase; Provisional

Probab=93.48  E-value=0.18  Score=44.60  Aligned_cols=38  Identities=29%  Similarity=0.304  Sum_probs=32.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .+.||++.|.|. |.||+++|+.| ...|++|+..+++..
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~   43 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTD   43 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            478999999986 79999999998 478999999887653

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.48  E-value=0.48  Score=44.28  Aligned_cols=37  Identities=27%  Similarity=0.382  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchh
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT  109 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~  109 (294)
                      .|++|.|.|.|.+|...++. ++.+|++ |++.+++...
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~-ak~~G~~~Vi~~~~~~~~  213 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAG-AALAGASKIIAVDIDDRK  213 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHH
Confidence            58899999999999999987 5889985 8888876543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.46  E-value=0.36  Score=43.57  Aligned_cols=36  Identities=28%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCch
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA  108 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~  108 (294)
                      .|++|.|+|.|.||...++. ++.+|.+ |++.+++..
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~-ak~~G~~~Vi~~~~~~~  156 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAA-AAAAGAARVVAADPSPD  156 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHH
Confidence            68899999999999999987 4889986 888876554

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=93.44  E-value=0.17  Score=45.44  Aligned_cols=96  Identities=14%  Similarity=0.146  Sum_probs=68.3

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccH
Q 022672           85 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  164 (294)
Q Consensus        85 G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~  164 (294)
                      |..+|-.++ ..|.+|+..||+.+-..+...+    .+.+     .++...++-.+..+.+.+.++..|....|-++. +
T Consensus        33 Ga~mAiefA-eAGHDVVLaePn~d~~dd~~w~----~ved-----AGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-r  101 (340)
T COG4007          33 GARMAIEFA-EAGHDVVLAEPNRDIMDDEHWK----RVED-----AGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-R  101 (340)
T ss_pred             chHHHHHHH-HcCCcEEeecCCccccCHHHHH----HHHh-----cCcEEecCchhhhhcceEEEEecccchhhHHHH-H
Confidence            456776764 6799999999987543322111    1222     233444566688899999999999987877765 8


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022672          165 ERLATMKKEAILVNCSRGPVIDEVALVEHL  194 (294)
Q Consensus       165 ~~l~~mk~gailIN~aRG~~vd~~aL~~aL  194 (294)
                      +.+..++.|+++.|+..-+.+   .|+..|
T Consensus       102 ei~~hvpEgAVicnTCT~sp~---vLy~~L  128 (340)
T COG4007         102 EILEHVPEGAVICNTCTVSPV---VLYYSL  128 (340)
T ss_pred             HHHhhCcCCcEecccccCchh---HHHHHh
Confidence            899999999999999886654   455555

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=93.39  E-value=0.38  Score=39.66  Aligned_cols=85  Identities=19%  Similarity=0.269  Sum_probs=51.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ...|++|++||+  + +.++++| +..+.+++++|+++......             ....   .....++++++||+|+
T Consensus         8 ~~~~~~V~~VG~--f-~P~~~~l-~~~~~~v~v~d~~~~~~~~~-------------~~~~---~~~~~~~~l~~aD~vi   67 (147)
T PF04016_consen    8 IGPGDKVGMVGY--F-QPLVEKL-KERGAEVRVFDLNPDNIGEE-------------PGDV---PDEDAEEILPWADVVI   67 (147)
T ss_dssp             TTTTSEEEEES-----HCCHHHH-CCCCSEEEEEESSGGG--SS-------------CT-E---EGGGHHHHGGG-SEEE
T ss_pred             hcCCCEEEEEcC--c-HHHHHHH-hcCCCCEEEEECCCCCCCCC-------------CCcC---CHHHHHHHHccCCEEE
Confidence            357899999996  2 2367776 57899999999987542110             0001   2345778899999987


Q ss_pred             EccCCCcccccccc---HHHHhcCCCCcEEEEcC
Q 022672          150 LHPVLDKTTYHLIN---KERLATMKKEAILVNCS  180 (294)
Q Consensus       150 l~~Plt~~t~~li~---~~~l~~mk~gailIN~a  180 (294)
                      +.-.      -++|   .+.++..+++..++=++
T Consensus        68 iTGs------TlvN~Ti~~iL~~~~~~~~vil~G   95 (147)
T PF04016_consen   68 ITGS------TLVNGTIDDILELARNAREVILYG   95 (147)
T ss_dssp             EECH------HCCTTTHHHHHHHTTTSSEEEEES
T ss_pred             EEee------eeecCCHHHHHHhCccCCeEEEEe
Confidence            7642      1222   45666677666665544

; PDB: 3L5O_B 3NPG_A.

>PRK12742 oxidoreductase; Provisional

Probab=93.36  E-value=0.57  Score=40.60  Aligned_cols=36  Identities=25%  Similarity=0.248  Sum_probs=30.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      .+.||++.|.|. |.||+.+|+.| ...|++|+...++
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~   39 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAG   39 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCC
Confidence            367899999996 89999999998 5789998876543

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=93.30  E-value=0.46  Score=43.83  Aligned_cols=95  Identities=21%  Similarity=0.164  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-ccccc--CCHHHHhh--cC
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRA--SSMDEVLR--EA  145 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~l~ell~--~a  145 (294)
                      .|.+|.|+|.|.+|...++.+ +.+|++ |++.+++.... +. ...+       +.... .....  ..+.++..  ..
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~a-k~~G~~~vi~~~~~~~~~-~~-~~~~-------ga~~~i~~~~~~~~~~~~~~~~~~~  232 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLA-RALGAEDVIGVDPSPERL-EL-AKAL-------GADFVINSGQDDVQEIRELTSGAGA  232 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HH-HHHh-------CCCEEEcCCcchHHHHHHHhCCCCC
Confidence            489999999999999999874 889998 99888765432 11 1111       11000 00000  01222222  46


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |+|+-+... +.    .....+..++++..++.++.
T Consensus       233 d~vid~~g~-~~----~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         233 DVAIECSGN-TA----ARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             CEEEECCCC-HH----HHHHHHHHhhcCCEEEEEcC
Confidence            787777652 11    11345667778877777654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=93.26  E-value=0.54  Score=45.31  Aligned_cols=116  Identities=19%  Similarity=0.228  Sum_probs=65.9

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  154 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl  154 (294)
                      ++.|||+|.+|.++|+.| +..|.+|.++|............    .+...  ..+....-.+ .+.+.++|+|+...--
T Consensus         1 ~~~~iG~G~~G~a~a~~l-~~~G~~V~~sD~~~~~~~~~~~~----~~~~~--~gi~~~~g~~-~~~~~~~d~vv~sp~i   72 (433)
T TIGR01087         1 KILILGLGKTGRAVARFL-HKKGAEVTVTDLKPNEELEPSMG----QLRLN--EGSVLHTGLH-LEDLNNADLVVKSPGI   72 (433)
T ss_pred             CEEEEEeCHhHHHHHHHH-HHCCCEEEEEeCCCCccchhHHH----HHhhc--cCcEEEecCc-hHHhccCCEEEECCCC
Confidence            378999999999999997 68999999999765432111000    00000  0111111123 3556789988766533


Q ss_pred             Ccccc----------ccccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672          155 DKTTY----------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       155 t~~t~----------~li~~-~~l-~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  198 (294)
                      .++..          .++.+ +++ ..++...+-|.-+.|+.--..=+...|+...
T Consensus        73 ~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        73 PPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             CCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            22211          12322 233 3334345666667888877777777776543

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=93.26  E-value=0.33  Score=45.48  Aligned_cols=90  Identities=14%  Similarity=0.213  Sum_probs=49.3

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhcCCC---EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~~g~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      +++|+|+|. |.+|+.+.+.|+ .-+.   ++.+..+..... ..        +.-.+ ....+... +. +.++++|+|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~-~~~hp~~~l~~l~s~~~~g-~~--------l~~~g-~~i~v~d~-~~-~~~~~vDvV   67 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILE-ERNFPVDKLRLLASARSAG-KE--------LSFKG-KELKVEDL-TT-FDFSGVDIA   67 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-hCCCCcceEEEEEccccCC-Ce--------eeeCC-ceeEEeeC-CH-HHHcCCCEE
Confidence            468999998 999999999984 5332   445553322111 00        00001 11111111 22 234789999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ++|+|-. .++.+. .   +.++.|+.+|+.|
T Consensus        68 f~A~g~g-~s~~~~-~---~~~~~G~~VIDlS   94 (334)
T PRK14874         68 LFSAGGS-VSKKYA-P---KAAAAGAVVIDNS   94 (334)
T ss_pred             EECCChH-HHHHHH-H---HHHhCCCEEEECC
Confidence            9999832 223222 1   2235788999877

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=93.24  E-value=0.47  Score=46.19  Aligned_cols=126  Identities=15%  Similarity=0.254  Sum_probs=74.5

Q ss_pred             CEEEEEcCChHHHH--HHHHHhh---cCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           74 QTVGVIGAGRIGSA--YARMMVE---GFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        74 ktvGIIGlG~IG~~--vA~~L~~---~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .+|.|||.|.. ..  +.+-|.+   .++ -+|+.+|...... +. .....+.+......+..+....+.++.++.|||
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl-~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADf   77 (437)
T cd05298           1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQ-EK-VAEAVKILFKENYPEIKFVYTTDPEEAFTDADF   77 (437)
T ss_pred             CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHH-HH-HHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCE
Confidence            47999999986 33  2222221   243 6899999876432 21 222222233333345566677899999999999


Q ss_pred             EEEccCCCcc-----------cccccc----------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022672          148 ISLHPVLDKT-----------TYHLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEHL  194 (294)
Q Consensus       148 V~l~~Plt~~-----------t~~li~----------------------~~~l~~mk~gailIN~aRG~~vd~~aL~~aL  194 (294)
                      |+...--...           -+|++.                      .+.++...|++++||.+..--+-..++.+..
T Consensus        78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~~  157 (437)
T cd05298          78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRLF  157 (437)
T ss_pred             EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHC
Confidence            9887643221           112222                      1223445689999999887766666666554


Q ss_pred             HcCCcceE
Q 022672          195 KQNPMFRV  202 (294)
Q Consensus       195 ~~g~i~ga  202 (294)
                      ...++.|.
T Consensus       158 ~~~kviGl  165 (437)
T cd05298         158 PNARILNI  165 (437)
T ss_pred             CCCCEEEE
Confidence            34455554

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=93.03  E-value=0.13  Score=49.43  Aligned_cols=35  Identities=23%  Similarity=0.423  Sum_probs=27.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCch
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQA  108 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~  108 (294)
                      .+|||.|||+||+.++|.+...++++|++ .|+...
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~  121 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFID  121 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCC
Confidence            48999999999999999853248999887 565543

>cd08293 PTGR2 Prostaglandin reductase

Probab=93.01  E-value=0.63  Score=42.94  Aligned_cols=93  Identities=16%  Similarity=0.145  Sum_probs=55.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-----hcC
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  145 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~a  145 (294)
                      |++|.|.|. |.+|+.+.+. ++.+|+ +|++.+++.... +...+.+       +....-.....++.+.+     ...
T Consensus       155 ~~~VlI~ga~g~vG~~aiql-Ak~~G~~~Vi~~~~s~~~~-~~~~~~l-------Ga~~vi~~~~~~~~~~i~~~~~~gv  225 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQI-GRLLGCSRVVGICGSDEKC-QLLKSEL-------GFDAAINYKTDNVAERLRELCPEGV  225 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHH-HHHcCCCEEEEEcCCHHHH-HHHHHhc-------CCcEEEECCCCCHHHHHHHHCCCCc
Confidence            489999998 9999999987 589998 899887765432 1111101       11111000112333222     246


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      |+++-++.. +    .+ .+.+..++++..+|.++
T Consensus       226 d~vid~~g~-~----~~-~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         226 DVYFDNVGG-E----IS-DTVISQMNENSHIILCG  254 (345)
T ss_pred             eEEEECCCc-H----HH-HHHHHHhccCCEEEEEe
Confidence            888776652 1    12 56677888888888775

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=92.99  E-value=3.4  Score=40.23  Aligned_cols=31  Identities=23%  Similarity=0.350  Sum_probs=25.9

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCC------EEEEEcCC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKM------NLIYYDLY  106 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~------~V~~~d~~  106 (294)
                      +|.|||.|.+|.++++.|+ ..|+      ++..+|..
T Consensus         1 kVlvVGaGGlGcE~lKnLa-l~Gv~~g~~G~I~IvD~D   37 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFA-LMGVGTGESGEITVTDMD   37 (435)
T ss_pred             CEEEECCCHHHHHHHHHHH-HcCCCcCCCCeEEEECCC
Confidence            4889999999999999985 5666      78888854

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=92.95  E-value=0.28  Score=45.54  Aligned_cols=80  Identities=23%  Similarity=0.334  Sum_probs=45.2

Q ss_pred             CEEEEEcCChHHHHHHHHHh-hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~-~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.||+++|-+|. +.++-++..+|...........+ ...-....+ .........+ .+-++.||+|+++.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~D-L~~~~~~~~-~~~~i~~~~~-y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALD-LSHAAAPLG-SDVKITGDGD-YEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcc-hhhcchhcc-CceEEecCCC-hhhhcCCCEEEEeC
Confidence            47999999999999998774 24566899999873321111111 000000000 0011111022 35678999999988


Q ss_pred             --CCCc
Q 022672          153 --VLDK  156 (294)
Q Consensus       153 --Plt~  156 (294)
                        |..|
T Consensus        78 G~prKp   83 (313)
T COG0039          78 GVPRKP   83 (313)
T ss_pred             CCCCCC
Confidence              5444

>cd00704 MDH Malate dehydrogenase

Probab=92.94  E-value=0.59  Score=43.63  Aligned_cols=109  Identities=19%  Similarity=0.222  Sum_probs=58.8

Q ss_pred             EEEEEcC-ChHHHHHHHHHhhc--CC----CEEEEEcCCc--hhHHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhhc
Q 022672           75 TVGVIGA-GRIGSAYARMMVEG--FK----MNLIYYDLYQ--ATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE  144 (294)
Q Consensus        75 tvGIIGl-G~IG~~vA~~L~~~--~g----~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~  144 (294)
                      +|+|+|. |.||+.+|..|+..  ++    .++..+|...  ........+     +.... ..........+..+.+++
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~D-----l~d~~~~~~~~~~i~~~~~~~~~~   76 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVME-----LQDCAFPLLKGVVITTDPEEAFKD   76 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeee-----hhhhcccccCCcEEecChHHHhCC
Confidence            7999999 99999999887422  12    1588899865  211100000     00000 000001111456788999


Q ss_pred             CCEEEEccCCCcccccc-----c--cH-------HHHhcC-CCCcEEEEcCCCcccCHHHHH
Q 022672          145 ADVISLHPVLDKTTYHL-----I--NK-------ERLATM-KKEAILVNCSRGPVIDEVALV  191 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~l-----i--~~-------~~l~~m-k~gailIN~aRG~~vd~~aL~  191 (294)
                      ||+|+++.-. +...++     +  |.       ..++.. +|++++|.++  ..+|.-.-+
T Consensus        77 aDiVVitAG~-~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~  135 (323)
T cd00704          77 VDVAILVGAF-PRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI  135 (323)
T ss_pred             CCEEEEeCCC-CCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence            9999887643 221111     0  11       123334 5788888885  566655533

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05442 malate dehydrogenase; Provisional

Probab=92.90  E-value=0.81  Score=42.78  Aligned_cols=111  Identities=16%  Similarity=0.104  Sum_probs=58.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhh-cC-C----CEEEEEcCCchh--HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVE-GF-K----MNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  144 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~-~~-g----~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  144 (294)
                      ++|+|||. |.+|..+|-.|.. +. +    .++..+|.....  ......+-. ....... ...  ....+..+-+++
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~-~~~~~~~-~~~--~i~~~~y~~~~d   80 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELD-DCAFPLL-AGV--VITDDPNVAFKD   80 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhh-hhhhhhc-CCc--EEecChHHHhCC
Confidence            48999998 9999999987642 22 2    178899975321  111111100 0000000 011  112355577899


Q ss_pred             CCEEEEccCCCc---ccccc-c--cHH-------HHhc-CCCCcEEEEcCCCcccCHHHH
Q 022672          145 ADVISLHPVLDK---TTYHL-I--NKE-------RLAT-MKKEAILVNCSRGPVIDEVAL  190 (294)
Q Consensus       145 aDiV~l~~Plt~---~t~~l-i--~~~-------~l~~-mk~gailIN~aRG~~vd~~aL  190 (294)
                      ||+|+++.-...   +|+-- +  |.+       .+.. -++.+++|.++  ..+|.-.-
T Consensus        81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~  138 (326)
T PRK05442         81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNAL  138 (326)
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHH
Confidence            999988764211   12211 1  111       1222 34788999987  55655543

>PRK06172 short chain dehydrogenase; Provisional

Probab=92.89  E-value=0.24  Score=43.55  Aligned_cols=39  Identities=23%  Similarity=0.195  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .+.||++.|.|. |.||+.+|+.|+ ..|++|+..+++...
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~-~~G~~v~~~~r~~~~   43 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFA-REGAKVVVADRDAAG   43 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            478999999997 899999999984 679999999887643

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=92.87  E-value=0.31  Score=48.89  Aligned_cols=38  Identities=18%  Similarity=0.112  Sum_probs=32.2

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      -.|+++.|.|. |.||+.+++.| ...|++|++++++...
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~L-Lk~G~~Vval~Rn~ek  116 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVREL-LKLGFRVRAGVRSAQR  116 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence            46889999997 99999999998 4779999998887644

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=92.83  E-value=0.42  Score=44.60  Aligned_cols=107  Identities=16%  Similarity=0.136  Sum_probs=57.9

Q ss_pred             EEEEEcC-ChHHHHHHHHHhhcCCC-------EEEEEcCCchh--HHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhh
Q 022672           75 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLR  143 (294)
Q Consensus        75 tvGIIGl-G~IG~~vA~~L~~~~g~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~  143 (294)
                      +|+|||. |.+|..+|-.|. ..+.       ++..+|.....  ......+-     ........ ......+..+.++
T Consensus         5 KV~IIGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl-----~~~~~~~~~~~~i~~~~~~~~~   78 (323)
T TIGR01759         5 RVAVTGAAGQIGYSLLFRIA-SGELFGKDQPVVLHLLDIPPAMKALEGVAMEL-----EDCAFPLLAGVVATTDPEEAFK   78 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHH-hCCcccCCCccEEEEEecCCcccccchHHHHH-----hhccccccCCcEEecChHHHhC
Confidence            7999998 999999998763 3343       78999985421  11111110     00000000 1111235567789


Q ss_pred             cCCEEEEccCCCc---ccccc-c--cHH-------HHhcCCC-CcEEEEcCCCcccCHHH
Q 022672          144 EADVISLHPVLDK---TTYHL-I--NKE-------RLATMKK-EAILVNCSRGPVIDEVA  189 (294)
Q Consensus       144 ~aDiV~l~~Plt~---~t~~l-i--~~~-------~l~~mk~-gailIN~aRG~~vd~~a  189 (294)
                      +||+|+++.-...   +|+-- +  |.+       .+....| .++++.++  ..+|.-.
T Consensus        79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  136 (323)
T TIGR01759        79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA  136 (323)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            9999998765321   12211 1  111       2233344 88998886  5555444

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=92.80  E-value=0.71  Score=42.95  Aligned_cols=91  Identities=13%  Similarity=0.170  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  148 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  148 (294)
                      .|.+|.|+|.|.||...++.+++.+ +.+|++.|++..+. +.. .       ..+     ..  ...+++..  ..|+|
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~-~~a-~-------~~~-----~~--~~~~~~~~~~g~d~v  226 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL-DLF-S-------FAD-----ET--YLIDDIPEDLAVDHA  226 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH-HHH-h-------hcC-----ce--eehhhhhhccCCcEE
Confidence            4889999999999999888753234 46899998765432 110 0       001     00  01112222  36888


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +-++.. +.+...+ .+.++.++++..++.++
T Consensus       227 iD~~G~-~~~~~~~-~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         227 FECVGG-RGSQSAI-NQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             EECCCC-CccHHHH-HHHHHhCcCCcEEEEEe
Confidence            877752 1111112 45677888888887764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=92.78  E-value=0.46  Score=44.76  Aligned_cols=90  Identities=16%  Similarity=0.259  Sum_probs=49.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhc--C-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEG--F-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~--~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      ...+|+|+|. |.+|+.+.+.|. .  + ..++..........         ..+...+ ....+.. .+. +.+.++|+
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~-~~~hP~~~l~~las~rsaG---------k~~~~~~-~~~~v~~-~~~-~~~~~~D~   72 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLT-DRDFPYSSLKMLASARSAG---------KKVTFEG-RDYTVEE-LTE-DSFDGVDI   72 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHH-hCCCCcceEEEEEccCCCC---------CeeeecC-ceeEEEe-CCH-HHHcCCCE
Confidence            4568999998 999999999884 4  3 23443332221110         0011111 1111111 122 44589999


Q ss_pred             EEEccCCCccccccccHHHHhc-CCCCcEEEEcC
Q 022672          148 ISLHPVLDKTTYHLINKERLAT-MKKEAILVNCS  180 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~-mk~gailIN~a  180 (294)
                      |++++|.. .+.     +.... .+.|+.+|+.|
T Consensus        73 vf~a~p~~-~s~-----~~~~~~~~~g~~VIDlS  100 (344)
T PLN02383         73 ALFSAGGS-ISK-----KFGPIAVDKGAVVVDNS  100 (344)
T ss_pred             EEECCCcH-HHH-----HHHHHHHhCCCEEEECC
Confidence            99999932 223     22222 25688999988

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=92.76  E-value=0.64  Score=43.55  Aligned_cols=97  Identities=16%  Similarity=0.174  Sum_probs=58.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~  149 (294)
                      ..|.++.|.|.|.+|..+++. ++..|++|++.+........ ....+       +.... .......+.++....|+++
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~-Ak~~G~~vi~~~~~~~~~~~-~~~~~-------Ga~~~i~~~~~~~~~~~~~~~D~vi  249 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKI-AKAMGHHVTVISSSDKKREE-ALEHL-------GADDYLVSSDAAEMQEAADSLDYII  249 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHH-HHHCCCeEEEEeCCHHHHHH-HHHhc-------CCcEEecCCChHHHHHhcCCCcEEE
Confidence            367899999999999999987 58999998888765543211 11111       11000 0000012333334578888


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      -+++.. .+    -...+..++++..++.++.
T Consensus       250 d~~g~~-~~----~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        250 DTVPVF-HP----LEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ECCCch-HH----HHHHHHHhccCCEEEEECC
Confidence            887621 11    1456778889998888864

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=92.73  E-value=0.47  Score=44.73  Aligned_cols=91  Identities=16%  Similarity=0.356  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCE---EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMN---LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .+.+|||||. |.+|+.+.+.|...-.++   +..+......         +..+.-.+ ....+.. .+.++ ++++|+
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~sa---------Gk~~~~~~-~~l~v~~-~~~~~-~~~~Di   71 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSA---------GKTVQFKG-REIIIQE-AKINS-FEGVDI   71 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccC---------CCCeeeCC-cceEEEe-CCHHH-hcCCCE
Confidence            3468999998 999999999985233444   4333322111         00010111 1222222 23344 488999


Q ss_pred             EEEccCCCccccccccHHHHhc-CCCCcEEEEcC
Q 022672          148 ISLHPVLDKTTYHLINKERLAT-MKKEAILVNCS  180 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~-mk~gailIN~a  180 (294)
                      +++++|. ..+     +++... .+.|+.+|+.|
T Consensus        72 vf~a~~~-~~s-----~~~~~~~~~~G~~VID~S   99 (347)
T PRK06728         72 AFFSAGG-EVS-----RQFVNQAVSSGAIVIDNT   99 (347)
T ss_pred             EEECCCh-HHH-----HHHHHHHHHCCCEEEECc
Confidence            9999983 222     333222 35789999987

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=92.69  E-value=0.19  Score=40.44  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=27.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  107 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~  107 (294)
                      .++|.|+|+|.+|..+|+.|+ ..|+ ++..+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence            579999999999999999985 5676 788888653

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=92.69  E-value=0.77  Score=42.75  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.+|.|+|.|.||..+++. ++..|.+|++.+++...
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~-a~~~G~~vi~~~~~~~~  202 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQT-AKAMGAAVVAIDIDPEK  202 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCeEEEEcCCHHH
Confidence            48899999999999999987 47899999998876543

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=92.68  E-value=0.65  Score=42.62  Aligned_cols=38  Identities=18%  Similarity=0.233  Sum_probs=31.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  107 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~  107 (294)
                      ..|...+|.|+|+|.+|.++|+.|+ ..|+ ++..+|...
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLa-laGVg~itI~D~d~   53 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLI-LAGVKSVTLHDTKP   53 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCc
Confidence            3588999999999999999999985 5676 588888653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=92.64  E-value=0.48  Score=43.59  Aligned_cols=106  Identities=17%  Similarity=0.172  Sum_probs=58.9

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--H-----------HHH-HhhhhhhhhhcCCCCcccc----cc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-----------EKF-VTAYGQFLKANGEQPVTWK----RA  135 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~-----------~~~-~~~~~~~~~~~~~~~~~~~----~~  135 (294)
                      +|.|||+|.+|.++++.|+ ..|+ ++...|...-..  +           .+. .+...+.+.... ......    ..
T Consensus         1 kVlVVGaGGlG~eilknLa-l~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~n-p~v~I~~~~~~i   78 (291)
T cd01488           1 KILVIGAGGLGCELLKNLA-LSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRV-PGVNVTPHFGKI   78 (291)
T ss_pred             CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHC-CCCEEEEEeccc
Confidence            4899999999999999985 4555 677777432100  0           000 000011111111 111111    11


Q ss_pred             -CCHHHHhhcCCEEEEccCCCccccccccHHHHhcC-----CCCcEEEEcCCCc
Q 022672          136 -SSMDEVLREADVISLHPVLDKTTYHLINKERLATM-----KKEAILVNCSRGP  183 (294)
Q Consensus       136 -~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~m-----k~gailIN~aRG~  183 (294)
                       ..-++++++.|+|+.++- +.+++..+++......     +.+.-+|..+..+
T Consensus        79 ~~~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G  131 (291)
T cd01488          79 QDKDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG  131 (291)
T ss_pred             CchhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence             122578899999999886 4667778877655543     2345577776433

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=92.63  E-value=1.1  Score=43.37  Aligned_cols=127  Identities=16%  Similarity=0.221  Sum_probs=73.1

Q ss_pred             CEEEEEcCChHHH-HHHHHHhh---cCC-CEEEEEcCC-chhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           74 QTVGVIGAGRIGS-AYARMMVE---GFK-MNLIYYDLY-QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        74 ktvGIIGlG~IG~-~vA~~L~~---~~g-~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .+|.|||.|..-. .+.+-|++   .+. -+++.+|.. +... +. .....+.+......+..+....++++.+++||+
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl-~~-v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadf   78 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKL-EI-VGALAKRMVKKAGLPIKVHLTTDRREALEGADF   78 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHH-HH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence            4799999999733 22333322   244 689999987 4432 11 111122222333334555667899999999999


Q ss_pred             EEEccCCCccccccccH---------------------------------HHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022672          148 ISLHPVLDKTTYHLINK---------------------------------ERLATMKKEAILVNCSRGPVIDEVALVEHL  194 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~---------------------------------~~l~~mk~gailIN~aRG~~vd~~aL~~aL  194 (294)
                      |+++.-.........+.                                 +.+....|+++++|.+..--+-..++.+..
T Consensus        79 Vi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~~k~~  158 (419)
T cd05296          79 VFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT  158 (419)
T ss_pred             EEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHHHhc
Confidence            98876432211100111                                 122334589999999887666666666555


Q ss_pred             HcCCcceEE
Q 022672          195 KQNPMFRVG  203 (294)
Q Consensus       195 ~~g~i~ga~  203 (294)
                       ..++.|.+
T Consensus       159 -~~rviGlc  166 (419)
T cd05296         159 -GDRVIGLC  166 (419)
T ss_pred             -cCCEEeeC
Confidence             44555553

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK05866 short chain dehydrogenase; Provisional

Probab=92.62  E-value=0.36  Score=43.99  Aligned_cols=40  Identities=20%  Similarity=0.170  Sum_probs=34.6

Q ss_pred             CcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           68 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        68 g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      +..+.|+++.|.|. |.||+++|+.|+ ..|++|+..+++.+
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La-~~G~~Vi~~~R~~~   75 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFA-RRGATVVAVARRED   75 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            45788999999997 999999999984 67999999998754

>PRK12747 short chain dehydrogenase; Provisional

Probab=92.58  E-value=0.61  Score=40.98  Aligned_cols=34  Identities=29%  Similarity=0.209  Sum_probs=28.4

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcC
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDL  105 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~  105 (294)
                      +.||++.|.|. |.||+++|+.| ...|++|+..+.
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l-~~~G~~v~~~~~   36 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRL-ANDGALVAIHYG   36 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHH-HHCCCeEEEEcC
Confidence            46899999986 79999999998 478999987653

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.53  E-value=0.44  Score=44.19  Aligned_cols=91  Identities=15%  Similarity=0.146  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .|.+|.|.|.|.+|...++. ++..|++|++.+++..+. + +..       +.+.....    ...++.-...|+++.+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~~~~~-~-~a~-------~~Ga~~vi----~~~~~~~~~~d~~i~~  230 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRGAAAR-R-LAL-------ALGAASAG----GAYDTPPEPLDAAILF  230 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCChHHH-H-HHH-------HhCCceec----cccccCcccceEEEEC
Confidence            48899999999999988876 588999999888775442 1 111       11211110    0000111245776666


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      ... .+    .-...++.++++..++.++.
T Consensus       231 ~~~-~~----~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       231 APA-GG----LVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             CCc-HH----HHHHHHHhhCCCcEEEEEec
Confidence            542 22    12567788888888887763

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=92.51  E-value=0.41  Score=41.88  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=32.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      .+.||++.|.|. |.||+.+|+.|+ ..|++|+..+++.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~-~~G~~vi~~~r~~   39 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLA-EAGADIVGAGRSE   39 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCch
Confidence            378999999998 899999999984 6799999988764

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.49  E-value=0.28  Score=35.54  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=29.0

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      ++.|||-|.+|-.+|..| ..+|.+|+.+++...
T Consensus         1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccch
Confidence            588999999999999998 689999999887654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK08324 short chain dehydrogenase; Validated

Probab=92.45  E-value=0.37  Score=49.47  Aligned_cols=40  Identities=30%  Similarity=0.373  Sum_probs=34.3

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           69 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        69 ~~l~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      ..+.||++.|.| .|.||+.+|+.| ...|.+|+..+++...
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~  458 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA  458 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence            457899999999 599999999998 5779999999987643

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=92.43  E-value=0.23  Score=40.99  Aligned_cols=31  Identities=35%  Similarity=0.583  Sum_probs=25.0

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEE-EcC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDL  105 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~  105 (294)
                      +|||+|+|+||+.+++.+...-++++.+ .|+
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            7999999999999999864456888776 454

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PLN02427 UDP-apiose/xylose synthase

Probab=92.42  E-value=0.28  Score=46.44  Aligned_cols=42  Identities=29%  Similarity=0.441  Sum_probs=33.2

Q ss_pred             cCcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           67 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        67 ~g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .|+.+..++|.|.|. |-||+.+++.|.+.-|.+|+++|++..
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~   50 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYND   50 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCch
Confidence            356678889999995 999999999984333689999987643

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=92.40  E-value=0.7  Score=43.52  Aligned_cols=31  Identities=16%  Similarity=0.448  Sum_probs=24.9

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEc
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYD  104 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d  104 (294)
                      .+|+|+| .|.+|+.+.+.|...-.+++.++.
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~   35 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALA   35 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEE
Confidence            5899998 899999999998533456888773

>PRK14851 hypothetical protein; Provisional

Probab=92.32  E-value=0.35  Score=49.60  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=29.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcC
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDL  105 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~  105 (294)
                      ..|++++|+|+|+|.+|..+|..|+ ..|+ ++..+|.
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~La-r~GVG~l~LvD~   75 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMV-RTGIGRFHIADF   75 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHH-HhCCCeEEEEcC
Confidence            4699999999999999999999985 5555 5666663

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=92.31  E-value=0.38  Score=45.16  Aligned_cols=90  Identities=19%  Similarity=0.316  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhc-C-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCE
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEG-F-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADV  147 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~-~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDi  147 (294)
                      .+.+|+|||. |-+|+.+.+.|... + ..++..+....+.         +..+.-.+ .+..+   .++++. ++++|+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~sa---------G~~~~~~~-~~~~v---~~~~~~~~~~~Dv   69 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESA---------GETLRFGG-KSVTV---QDAAEFDWSQAQL   69 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcC---------CceEEECC-cceEE---EeCchhhccCCCE
Confidence            4568999998 99999999998431 4 3465555332111         01111111 12211   244444 378999


Q ss_pred             EEEccCCCccccccccHHHHhcC-CCCcEEEEcC
Q 022672          148 ISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  180 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~m-k~gailIN~a  180 (294)
                      +++++|..      +..+....+ +.|+.+|+.|
T Consensus        70 vf~a~p~~------~s~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         70 AFFVAGRE------ASAAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             EEECCCHH------HHHHHHHHHHHCCCEEEECC
Confidence            99999832      223333322 5689999998

>CHL00194 ycf39 Ycf39; Provisional

Probab=92.21  E-value=0.32  Score=44.80  Aligned_cols=70  Identities=11%  Similarity=0.051  Sum_probs=44.9

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ++|.|.| .|.||+.+++.| ..-|.+|.+.+|+..... .. .       ..+..-  .......++.+.++.+|+|+.
T Consensus         1 MkIlVtGatG~iG~~lv~~L-l~~g~~V~~l~R~~~~~~-~l-~-------~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~   70 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQA-LDEGYQVRCLVRNLRKAS-FL-K-------EWGAELVYGDLSLPETLPPSFKGVTAIID   70 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHH-HHCCCeEEEEEcChHHhh-hH-h-------hcCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence            4789999 499999999998 467999999887653311 00 0       000000  011123457788999999987


Q ss_pred             ccC
Q 022672          151 HPV  153 (294)
Q Consensus       151 ~~P  153 (294)
                      +.+
T Consensus        71 ~~~   73 (317)
T CHL00194         71 AST   73 (317)
T ss_pred             CCC
Confidence            654

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.19  E-value=0.48  Score=46.02  Aligned_cols=116  Identities=20%  Similarity=0.238  Sum_probs=64.2

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcccccc---CCHHHHhhcCCEEEEc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLREADVISLH  151 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~aDiV~l~  151 (294)
                      +|.|||+|..|.+.|+.| ...|.+|.++|............    .+...+. .......   ..+++.+.+.|.|+..
T Consensus         2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~gi-~~~~g~~~~~~~~~~~~~~~d~vv~s   75 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSPELLERQQ----ELEQEGI-TVKLGKPLELESFQPWLDQPDLVVVS   75 (459)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHHH----HHHHcCC-EEEECCccchhhhhHHhhcCCEEEEC
Confidence            589999999999999987 58899999999765432211000    0111110 0100000   1223567889998875


Q ss_pred             cCCCcccc----------ccccHH-HH-hcCCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 022672          152 PVLDKTTY----------HLINKE-RL-ATMKK-EAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       152 ~Plt~~t~----------~li~~~-~l-~~mk~-gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ....++..          .++.+- .+ ..+++ ..+-|--+.|+.--..=|...|+.
T Consensus        76 ~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~  133 (459)
T PRK02705         76 PGIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA  133 (459)
T ss_pred             CCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            54333211          122222 22 33333 345555567887777766666654

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=92.11  E-value=0.34  Score=44.98  Aligned_cols=103  Identities=21%  Similarity=0.319  Sum_probs=58.7

Q ss_pred             EEEEEcC-ChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc---cCCHHHHhhcCCEEE
Q 022672           75 TVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVIS  149 (294)
Q Consensus        75 tvGIIGl-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aDiV~  149 (294)
                      +|+|||. |.+|..+|-.|+. .+.-++..+|.....  ....+     +.. .........   -+++.+.+++||+|+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~--g~a~D-----L~~-~~~~~~i~~~~~~~~~~~~~~daDivv   72 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA--GVAAD-----LSH-IPTAASVKGFSGEEGLENALKGADVVV   72 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc--EEEch-----hhc-CCcCceEEEecCCCchHHHcCCCCEEE
Confidence            5899999 9999999987643 344589999986511  11111     111 111111221   123567899999999


Q ss_pred             EccCCCc---cccc-cc--cH-------HHHhcCCCCcEEEEcCCCcccCH
Q 022672          150 LHPVLDK---TTYH-LI--NK-------ERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       150 l~~Plt~---~t~~-li--~~-------~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      ++.-...   .++- ++  |.       +.+..-.|++++|+++-  .+|.
T Consensus        73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv  121 (312)
T TIGR01772        73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS  121 (312)
T ss_pred             EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence            8875321   1111 11  11       12334468999999954  4553

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK07576 short chain dehydrogenase; Provisional

Probab=92.09  E-value=0.39  Score=42.82  Aligned_cols=39  Identities=21%  Similarity=0.161  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .++.+|++.|.|. |.||+.+++.| ...|++|+..+++..
T Consensus         5 ~~~~~k~ilItGasggIG~~la~~l-~~~G~~V~~~~r~~~   44 (264)
T PRK07576          5 FDFAGKNVVVVGGTSGINLGIAQAF-ARAGANVAVASRSQE   44 (264)
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            3588999999988 89999999998 478999999988754

>PLN02740 Alcohol dehydrogenase-like

Probab=92.08  E-value=0.99  Score=42.69  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCch
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA  108 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~  108 (294)
                      -.|.+|.|+|.|.||...++. ++.+|+ +|++.++...
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~-ak~~G~~~Vi~~~~~~~  234 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEG-ARARGASKIIGVDINPE  234 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHH-HHHCCCCcEEEEcCChH
Confidence            458899999999999999987 489999 6988887654

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=91.96  E-value=5.1  Score=37.04  Aligned_cols=77  Identities=10%  Similarity=0.042  Sum_probs=45.7

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.|++|++||=+ ++.++.+..+ ..||++|....|..-...+.+.+.........+   ..+....++ +.++++|+|
T Consensus       144 ~l~g~kva~vGD~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g---~~~~~~~d~-~a~~~aDvv  218 (302)
T PRK14805        144 DVSKVKLAYVGDGNNVTHSLMYGA-AILGATMTVICPPGHFPDGQIVAEAQELAAKSG---GKLVLTSDI-EAIEGHDAI  218 (302)
T ss_pred             CcCCcEEEEEcCCCccHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CEEEEEcCH-HHHCCCCEE
Confidence            4789999999984 5667777776 579999999887542211111111000011111   122234565 568999999


Q ss_pred             EEc
Q 022672          149 SLH  151 (294)
Q Consensus       149 ~l~  151 (294)
                      ..-
T Consensus       219 y~~  221 (302)
T PRK14805        219 YTD  221 (302)
T ss_pred             Eee
Confidence            763

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.95  E-value=2  Score=40.27  Aligned_cols=112  Identities=19%  Similarity=0.256  Sum_probs=63.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhc--CCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC--CEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEG--FKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVI  148 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~--~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV  148 (294)
                      -++||+|+|.|++-.++.|...  -+..|++ +||+.+ +...|.+       +++..  ..+.+.+.|||++..  |+|
T Consensus         7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~-~A~~fAq-------~~~~~--~~k~y~syEeLakd~~vDvV   76 (351)
T KOG2741|consen    7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLE-RAKEFAQ-------RHNIP--NPKAYGSYEELAKDPEVDVV   76 (351)
T ss_pred             eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHH-HHHHHHH-------hcCCC--CCccccCHHHHhcCCCcCEE
Confidence            3699999999999999987322  2677765 566433 2223322       22221  234568999999766  899


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  199 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v-d~~aL~~aL~~g~i  199 (294)
                      .+..|. ++-..+ -...+.  +...+|+.--=.--+ +.+.++++.+.+.+
T Consensus        77 yi~~~~-~qH~ev-v~l~l~--~~K~VL~EKPla~n~~e~~~iveaA~~rgv  124 (351)
T KOG2741|consen   77 YISTPN-PQHYEV-VMLALN--KGKHVLCEKPLAMNVAEAEEIVEAAEARGV  124 (351)
T ss_pred             EeCCCC-ccHHHH-HHHHHH--cCCcEEecccccCCHHHHHHHHHHHHHcCc
Confidence            988884 332222 122222  333466654322222 23346666666553

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=91.94  E-value=0.52  Score=45.15  Aligned_cols=65  Identities=15%  Similarity=0.144  Sum_probs=49.7

Q ss_pred             cCCCEEEEEcC----------ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 022672           71 LKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  140 (294)
Q Consensus        71 l~gktvGIIGl----------G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  140 (294)
                      ..|++|+|+|+          ..-...+++.| ...|.+|.+|||......                 ..+.....++++
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L-~~~G~~v~~~DP~~~~~~-----------------~~~~~~~~~~~~  355 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRI-KAKGVEVIIYEPVMKEDS-----------------FFNSRLERDLAT  355 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHH-HhCCCEEEEECCCCCchh-----------------hcCCeeeCCHHH
Confidence            47899999999          34567888887 689999999999743210                 112345689999


Q ss_pred             HhhcCCEEEEccC
Q 022672          141 VLREADVISLHPV  153 (294)
Q Consensus       141 ll~~aDiV~l~~P  153 (294)
                      .++.||.|++..-
T Consensus       356 ~~~~~~~~~~~~~  368 (388)
T PRK15057        356 FKQQADVIISNRM  368 (388)
T ss_pred             HHHhCCEEEEcCC
Confidence            9999999998764

>PRK08374 homoserine dehydrogenase; Provisional

Probab=91.94  E-value=0.59  Score=43.88  Aligned_cols=129  Identities=18%  Similarity=0.272  Sum_probs=65.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhh-------cCC--CEEEEE-cCCchh------HHHHHHhhhhhhhhhcCCCCcccc----
Q 022672           74 QTVGVIGAGRIGSAYARMMVE-------GFK--MNLIYY-DLYQAT------RLEKFVTAYGQFLKANGEQPVTWK----  133 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~-------~~g--~~V~~~-d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----  133 (294)
                      .+|+|+|+|.+|+.+++.|.+       .+|  .+|.+. |++...      ..++..+ +   ....+ ....+.    
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~-~---~~~~~-~~~~~~~~~~   77 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKE-V---KENFG-KLSNWGNDYE   77 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHH-h---hhccC-chhhcccccc
Confidence            479999999999999987643       145  666544 432110      0011000 0   00000 000000    


Q ss_pred             -ccCCHHHHh--hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCcc-eEEeeCCC
Q 022672          134 -RASSMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMF-RVGLDVFE  208 (294)
Q Consensus       134 -~~~~l~ell--~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v-d~~aL~~aL~~g~i~-ga~lDV~~  208 (294)
                       ...++++++  .++|+|+-+.+. +...    .-..+.++.|.-+|-...|.+- ..++|.+..++.... .+.--|.-
T Consensus        78 ~~~~~~~ell~~~~~DVvVd~t~~-~~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~  152 (336)
T PRK08374         78 VYNFSPEEIVEEIDADIVVDVTND-KNAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMA  152 (336)
T ss_pred             ccCCCHHHHHhcCCCCEEEECCCc-HHHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccc
Confidence             012677887  589999977752 2111    2233455677777766665442 455666655444322 23333444


Q ss_pred             CCCC
Q 022672          209 DEPY  212 (294)
Q Consensus       209 ~EP~  212 (294)
                      .-|.
T Consensus       153 GiPi  156 (336)
T PRK08374        153 GTPI  156 (336)
T ss_pred             cCCc
Confidence            4454

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.90  E-value=0.22  Score=48.26  Aligned_cols=115  Identities=20%  Similarity=0.154  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV~l  150 (294)
                      .+-+++|+|+|.+|.++|+.| ...|++|.++|.........       .+.... ....... ..+ .+.+.++|+|+.
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~-------~l~~~~-~g~~~~~~~~~-~~~~~~~d~vV~   74 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQPPGLD-------TLAREF-PDVELRCGGFD-CELLVQASEIII   74 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCCchhHH-------HHHhhc-CCcEEEeCCCC-hHHhcCCCEEEE
Confidence            345899999999999999987 68999999999754321111       011100 0111111 113 344678998877


Q ss_pred             ccCCCcccc----------ccccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          151 HPVLDKTTY----------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       151 ~~Plt~~t~----------~li~~-~~l-~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ..--.++..          .++.+ +++ ..++...+-|--+.|+.--..-+...|+.
T Consensus        75 sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~  132 (448)
T PRK03803         75 SPGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA  132 (448)
T ss_pred             CCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence            653222211          22332 333 23343445555567887777767777764

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=91.88  E-value=0.5  Score=41.63  Aligned_cols=38  Identities=26%  Similarity=0.204  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .+.||++.|.|. |.||+.+|+.|+ ..|++|+..+++..
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~-~~G~~V~~~~r~~~   45 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLA-QAGAEVILNGRDPA   45 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            478999999996 999999999984 67999999988754

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=91.87  E-value=0.87  Score=41.75  Aligned_cols=94  Identities=19%  Similarity=0.161  Sum_probs=56.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHh-----hc
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVL-----RE  144 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell-----~~  144 (294)
                      .|.+|.|.|. |.+|+.+++. ++..|++|++.+++.... +. ..       ..+.... ......++.+.+     ..
T Consensus       138 ~g~~VLI~ga~g~vG~~aiql-Ak~~G~~Vi~~~~s~~~~-~~-~~-------~lGa~~vi~~~~~~~~~~~~~~~~~~g  207 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQI-AKLKGCKVVGAAGSDEKV-AY-LK-------KLGFDVAFNYKTVKSLEETLKKASPDG  207 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHH-HHHcCCEEEEEeCCHHHH-HH-HH-------HcCCCEEEeccccccHHHHHHHhCCCC
Confidence            5789999995 9999999987 589999999887765432 11 11       1111110 000011233322     13


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|+++-++.. +    .+ ...++.++++..+|..+.
T Consensus       208 vdvv~d~~G~-~----~~-~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       208 YDCYFDNVGG-E----FS-NTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             eEEEEECCCH-H----HH-HHHHHHhCcCcEEEEecc
Confidence            6777766641 1    12 566788888888888754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=91.87  E-value=0.88  Score=41.98  Aligned_cols=96  Identities=18%  Similarity=0.225  Sum_probs=56.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~  149 (294)
                      -.|.++.|.|.|.+|+.+++.+ +.+|++|++.+++.+.. +. ...+       +.... ........+++-...|+++
T Consensus       168 ~~g~~vlV~g~g~vG~~~~~~a-~~~G~~v~~~~~~~~~~-~~-~~~~-------g~~~vi~~~~~~~~~~~~~~~d~v~  237 (337)
T cd05283         168 GPGKRVGVVGIGGLGHLAVKFA-KALGAEVTAFSRSPSKK-ED-ALKL-------GADEFIATKDPEAMKKAAGSLDLII  237 (337)
T ss_pred             CCCCEEEEECCcHHHHHHHHHH-HHcCCeEEEEcCCHHHH-HH-HHHc-------CCcEEecCcchhhhhhccCCceEEE
Confidence            3577999999999999999874 78999999988765432 11 1111       10000 0000001122234577887


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      -+.+..     ....+.++.++++..+|+++.
T Consensus       238 ~~~g~~-----~~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         238 DTVSAS-----HDLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             ECCCCc-----chHHHHHHHhcCCCEEEEEec
Confidence            777632     112556677777777777754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=91.82  E-value=3.2  Score=41.67  Aligned_cols=196  Identities=20%  Similarity=0.185  Sum_probs=115.9

Q ss_pred             CCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhc
Q 022672           16 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG   95 (294)
Q Consensus        16 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~   95 (294)
                      ..|.+.|.-=   +-+|--+++-+|+..|-                     .|..|.+.+|.|+|.|..|-.+|+.|...
T Consensus       288 ~~i~~FnDDi---QGTaaV~lAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgigia~ll~~~  343 (581)
T PLN03129        288 TTHLCFNDDI---QGTAAVALAGLLAALRA---------------------TGGDLADQRILFAGAGEAGTGIAELIALA  343 (581)
T ss_pred             cCCCEecccc---chHHHHHHHHHHHHHHH---------------------hCCchhhceEEEECCCHHHHHHHHHHHHH
Confidence            4566665532   34555677878887762                     23568999999999999999999987532


Q ss_pred             ----CCC-------EEEEEcCCch---hH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEEEccCCCc
Q 022672           96 ----FKM-------NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDK  156 (294)
Q Consensus        96 ----~g~-------~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~~Plt~  156 (294)
                          .|+       +++.+|+..-   .+   .......|.    ...      ....+|.|+++.  .|+++=+--   
T Consensus       344 ~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa----~~~------~~~~~L~e~v~~vkptvLIG~S~---  410 (581)
T PLN03129        344 MSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFA----HDH------EPGASLLEAVKAIKPTVLIGLSG---  410 (581)
T ss_pred             HHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHH----hhc------ccCCCHHHHHhccCCCEEEEecC---
Confidence                355       7888886631   00   111111111    111      123589999998  898876531   


Q ss_pred             cccccccHHHHhcCC---CCcEEEEcCCCccc---CHHHHHHHHHcCC-cceEEeeCCCCCCCC-C---CCccCCCCeEE
Q 022672          157 TTYHLINKERLATMK---KEAILVNCSRGPVI---DEVALVEHLKQNP-MFRVGLDVFEDEPYM-K---PGLSEMKNAIV  225 (294)
Q Consensus       157 ~t~~li~~~~l~~mk---~gailIN~aRG~~v---d~~aL~~aL~~g~-i~ga~lDV~~~EP~~-~---~~L~~~~nvii  225 (294)
                       .-+.++++.++.|.   +..++.=.|....-   ..++.+++ .+|+ |.+.+.   .-+|.. +   ..--+..|+++
T Consensus       411 -~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~-T~G~ai~AtGS---Pf~pv~~~Gr~~~p~Q~NN~~i  485 (581)
T PLN03129        411 -VGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTW-TGGRAIFASGS---PFDPVEYNGKTFHPGQANNAYI  485 (581)
T ss_pred             -CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHh-hcCCEEEEeCC---CCCCeeeCCeeecCccccceee
Confidence             24789999999995   78899988876532   23333333 3355 332221   111211 0   11235689999


Q ss_pred             ccCCCCC-----cHHHHHHHHHHHHHHHHHHHc
Q 022672          226 VPHIASA-----SKWTREGMATLAALNVLGKIK  253 (294)
Q Consensus       226 TPHia~~-----t~~~~~~~~~~~~~nl~~~~~  253 (294)
                      -|=++-.     ...-.+.|...+++-+..+..
T Consensus       486 FPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~  518 (581)
T PLN03129        486 FPGIGLGALLSGAIRVTDDMLLAAAEALAAQVT  518 (581)
T ss_pred             ccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCC
Confidence            9987632     111234555666666666543

>PRK05867 short chain dehydrogenase; Provisional

Probab=91.78  E-value=0.46  Score=41.84  Aligned_cols=38  Identities=21%  Similarity=0.113  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .+.||++.|.|. |.||+++|+.|+ ..|.+|+..+++..
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~-~~G~~V~~~~r~~~   44 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYV-EAGAQVAIAARHLD   44 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCHH
Confidence            478999999997 899999999984 78999999888654

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=91.76  E-value=0.92  Score=42.51  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=55.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEEEc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLH  151 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~l~  151 (294)
                      .+|+|+|. |-.|.++.++|+..-.+++..+..+.... ..+.+.+. .  ..+....... ..+.+++ ..+||+||+|
T Consensus         3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g-~~~~~~~p-~--l~g~~~l~~~-~~~~~~~~~~~~DvvFla   77 (349)
T COG0002           3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAG-KPVSDVHP-N--LRGLVDLPFQ-TIDPEKIELDECDVVFLA   77 (349)
T ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcC-CchHHhCc-c--cccccccccc-cCChhhhhcccCCEEEEe
Confidence            47999998 99999999998655577876665443110 01111000 0  0010111111 1233343 4569999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  186 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  186 (294)
                      +|.. ....++ .   ..+.+|..+|+.|--==++
T Consensus        78 lPhg-~s~~~v-~---~l~~~g~~VIDLSadfR~~  107 (349)
T COG0002          78 LPHG-VSAELV-P---ELLEAGCKVIDLSADFRLK  107 (349)
T ss_pred             cCch-hHHHHH-H---HHHhCCCeEEECCcccccC
Confidence            9943 222222 2   2223566699998544344

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=91.75  E-value=0.68  Score=41.19  Aligned_cols=102  Identities=13%  Similarity=0.151  Sum_probs=56.7

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-HH-----------HhhhhhhhhhcCCCCcccc----cc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-KF-----------VTAYGQFLKANGEQPVTWK----RA  135 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~~-----------~~~~~~~~~~~~~~~~~~~----~~  135 (294)
                      +|.|||.|.+|..+++.|+ ..|+ ++..+|...-..  +. .+           .+...+.+.... ......    ..
T Consensus         1 kVlvvG~GGlG~eilk~La-~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~n-p~v~i~~~~~~i   78 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLA-LMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRN-PNCKVVPYQNKV   78 (234)
T ss_pred             CEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHC-CCCEEEEEeccC
Confidence            4899999999999999985 4555 566776542110  00 00           000011111111 111110    11


Q ss_pred             ---CC-HHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          136 ---SS-MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       136 ---~~-l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                         .+ -++++++.|+|+.++- +.+++..+++.....   +.-+|+.+..
T Consensus        79 ~~~~~~~~~f~~~~DvVi~a~D-n~~aR~~ln~~c~~~---~iplI~~g~~  125 (234)
T cd01484          79 GPEQDFNDTFFEQFHIIVNALD-NIIARRYVNGMLIFL---IVPLIESGTE  125 (234)
T ss_pred             ChhhhchHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc---CCCEEEEccc
Confidence               11 2467899999999986 566777777766554   3347776543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK07326 short chain dehydrogenase; Provisional

Probab=91.73  E-value=0.47  Score=41.14  Aligned_cols=38  Identities=24%  Similarity=0.231  Sum_probs=32.0

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      +.++++.|+|. |.||+.+++.|+ ..|.+|++.++++..
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~-~~g~~V~~~~r~~~~   42 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALL-AEGYKVAITARDQKE   42 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEeeCCHHH
Confidence            56789999986 999999999985 579999999987543

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=91.72  E-value=0.48  Score=41.27  Aligned_cols=38  Identities=29%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .+.+|++.|.| .|.+|+.+++.|+ ..|++|++.+++..
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~-~~g~~V~~~~r~~~   41 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLA-ADGAEVIVVDICGD   41 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            46789999999 5999999999984 67999999988754

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=91.68  E-value=0.43  Score=44.60  Aligned_cols=109  Identities=23%  Similarity=0.255  Sum_probs=58.7

Q ss_pred             EEEEEcC-ChHHHHHHHHHhhc------CCCEEEEEcCCchhH-HHHHHhhhhhhhhhcC-CCCccccccCCHHHHhhcC
Q 022672           75 TVGVIGA-GRIGSAYARMMVEG------FKMNLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        75 tvGIIGl-G~IG~~vA~~L~~~------~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~a  145 (294)
                      +|+|+|. |.+|+.++..|...      .+.++..+|+..... ......    .+.... ..........++.+.+++|
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~----Dl~d~~~~~~~~~~~~~~~~~~l~~a   79 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVM----ELQDCAFPLLKSVVATTDPEEAFKDV   79 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceee----ehhhccccccCCceecCCHHHHhCCC
Confidence            6999999 99999999987421      224899999854211 111000    000000 0000111235677889999


Q ss_pred             CEEEEccCCCcc---cc-ccc--cHH-------HHhcC-CCCcEEEEcCCCcccCHHH
Q 022672          146 DVISLHPVLDKT---TY-HLI--NKE-------RLATM-KKEAILVNCSRGPVIDEVA  189 (294)
Q Consensus       146 DiV~l~~Plt~~---t~-~li--~~~-------~l~~m-k~gailIN~aRG~~vd~~a  189 (294)
                      |+|+.+.-....   ++ .++  |.+       .+... +|++++|.++  ..+|.-.
T Consensus        80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t  135 (325)
T cd01336          80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTNA  135 (325)
T ss_pred             CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHHH
Confidence            999887654221   11 111  111       23333 5788888887  3454433

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=91.67  E-value=1.3  Score=40.89  Aligned_cols=36  Identities=17%  Similarity=0.225  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .|++|.|.|.|.+|+.+++. ++.+|.+|++.++...
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~-a~~~G~~vi~~~~~~~  198 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQY-AAKMGFRTVAISRGSD  198 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHCCCeEEEEeCChH
Confidence            57899999999999999987 4899999998887643

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=91.64  E-value=1.3  Score=42.89  Aligned_cols=127  Identities=9%  Similarity=0.187  Sum_probs=72.9

Q ss_pred             CEEEEEcCChH-HHHHHHHHhh---cC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           74 QTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        74 ktvGIIGlG~I-G~~vA~~L~~---~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+|.|||.|.. ...+.+-|.+   .+ +-+|+.+|..+... +. .....+.+......+..+....++++.+++||||
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl-~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfV   78 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERL-DI-ILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFV   78 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHH-HH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence            37999999985 1123333321   24 46899999876432 21 2222223333333455566778999999999999


Q ss_pred             EEccCCCcc-----------ccccccH----------------------HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672          149 SLHPVLDKT-----------TYHLINK----------------------ERLATMKKEAILVNCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       149 ~l~~Plt~~-----------t~~li~~----------------------~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  195 (294)
                      +...--...           -+|++..                      +.+....|++++||.+..--+-..++.+...
T Consensus        79 i~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~~~~~p  158 (425)
T cd05197          79 INQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYVP  158 (425)
T ss_pred             EEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHHHhCC
Confidence            987653321           1111110                      1223345899999998776565666666542


Q ss_pred             cCCcceE
Q 022672          196 QNPMFRV  202 (294)
Q Consensus       196 ~g~i~ga  202 (294)
                      ..++.|.
T Consensus       159 ~~rviG~  165 (425)
T cd05197         159 PEKAVGL  165 (425)
T ss_pred             CCcEEEE
Confidence            3344443

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK08589 short chain dehydrogenase; Validated

Probab=91.62  E-value=0.4  Score=42.96  Aligned_cols=36  Identities=22%  Similarity=0.216  Sum_probs=31.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      .+.||++.|.|. |.||+++|+.|+ ..|++|+..+++
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~-~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALA-QEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCc
Confidence            378999999998 889999999984 679999999887

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.54  E-value=1.6  Score=42.24  Aligned_cols=114  Identities=19%  Similarity=0.183  Sum_probs=63.6

Q ss_pred             cCC-CEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhcCCE
Q 022672           71 LKG-QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV  147 (294)
Q Consensus        71 l~g-ktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  147 (294)
                      +.+ ++|.|||+|..|.+.++.|.+..| ++|.++|.........       .+..    .+... ...+. +.+.++|+
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~-------~l~~----g~~~~~g~~~~-~~~~~~d~   71 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQE-------QLPE----DVELHSGGWNL-EWLLEADL   71 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHH-------Hhhc----CCEEEeCCCCh-HHhccCCE
Confidence            345 789999999999999998854444 8999999754321100       0111    11111 11133 34578998


Q ss_pred             EEEccCCCcccc----------ccccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          148 ISLHPVLDKTTY----------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       148 V~l~~Plt~~t~----------~li~~-~~l-~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      |+...--.+...          .++.+ +++ ..++...+-|--+-|+.--..=|...|+.
T Consensus        72 vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  132 (438)
T PRK04663         72 VVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA  132 (438)
T ss_pred             EEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            876653222211          12322 333 23443445555567887776666677754

>PRK07985 oxidoreductase; Provisional

Probab=91.54  E-value=0.74  Score=41.92  Aligned_cols=36  Identities=25%  Similarity=0.127  Sum_probs=30.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      .+.||++.|.|. |.||+++|+.|+ ..|++|+..++.
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~-~~G~~Vi~~~~~   82 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYA-REGADVAISYLP   82 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEecCC
Confidence            378999999997 899999999984 679999887654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=91.54  E-value=0.91  Score=42.70  Aligned_cols=95  Identities=23%  Similarity=0.203  Sum_probs=57.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccC-C----HHHHh--hc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-S----MDEVL--RE  144 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----l~ell--~~  144 (294)
                      +.++.|+|.|.||...++. ++.+|. +|++.|+++... +...+.        ........... +    ..++-  ..
T Consensus       169 ~~~V~V~GaGpIGLla~~~-a~~~Ga~~Viv~d~~~~Rl-~~A~~~--------~g~~~~~~~~~~~~~~~~~~~t~g~g  238 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIAL-AKLLGASVVIVVDRSPERL-ELAKEA--------GGADVVVNPSEDDAGAEILELTGGRG  238 (350)
T ss_pred             CCEEEEECCCHHHHHHHHH-HHHcCCceEEEeCCCHHHH-HHHHHh--------CCCeEeecCccccHHHHHHHHhCCCC
Confidence            3399999999999998776 478886 677788876542 211110        11111010101 1    11333  24


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      +|+++-|.. .+.+.    .+.++..+++..++.++-.
T Consensus       239 ~D~vie~~G-~~~~~----~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         239 ADVVIEAVG-SPPAL----DQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CCEEEECCC-CHHHH----HHHHHHhcCCCEEEEEecc
Confidence            999999987 22211    5677888999888888654

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=91.52  E-value=0.62  Score=42.93  Aligned_cols=74  Identities=20%  Similarity=0.305  Sum_probs=50.2

Q ss_pred             ccCCCEEEEEc---CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           70 LLKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        70 ~l~gktvGIIG---lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      .+.|++|+|+|   .|+..++.++.| ..||++|..+.|..-...+...+.    +...+   ..+......+|.++++|
T Consensus       155 ~~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~----l~~~~---~~~~~~~~~e~~i~~~D  226 (316)
T COG0540         155 RLDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEE----LEEKG---GVVVEHDSDEEVIEEAD  226 (316)
T ss_pred             CcCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHH----HhhcC---ceEEEecchhhhhccCC
Confidence            49999999999   699999999998 689999999987643221111111    11111   11233456667999999


Q ss_pred             EEEEc
Q 022672          147 VISLH  151 (294)
Q Consensus       147 iV~l~  151 (294)
                      ++.+.
T Consensus       227 Vl~~l  231 (316)
T COG0540         227 VLYML  231 (316)
T ss_pred             EEEee
Confidence            99543

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=91.51  E-value=1.2  Score=41.62  Aligned_cols=95  Identities=17%  Similarity=0.177  Sum_probs=55.3

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcc-ccccCCHHHHhh-----
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-WKRASSMDEVLR-----  143 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~-----  143 (294)
                      -.|.+|.|.|. |.+|..+++. ++.+|++|++.+++.... +.....       .+..... .....++.+.+.     
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiql-Ak~~G~~Vi~~~~~~~k~-~~~~~~-------lGa~~vi~~~~~~~~~~~i~~~~~~  227 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQL-AKLHGCYVVGSAGSSQKV-DLLKNK-------LGFDEAFNYKEEPDLDAALKRYFPE  227 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEcCCHHHH-HHHHHh-------cCCCEEEECCCcccHHHHHHHHCCC
Confidence            35889999999 9999999987 589999999887665432 111000       1111110 000113333222     


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ..|+++-++.  ..    .-...++.++++..++.++
T Consensus       228 gvD~v~d~vG--~~----~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        228 GIDIYFDNVG--GD----MLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             CcEEEEECCC--HH----HHHHHHHHhccCCEEEEEC
Confidence            3677776654  11    1155677778887777764

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=91.46  E-value=0.45  Score=40.82  Aligned_cols=72  Identities=13%  Similarity=0.011  Sum_probs=48.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||. |.+|+.+++-. +.-|.+|+++-|++.+....  +.       ......+....+++.+.+..-|+|+.+.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA-~~RGHeVTAivRn~~K~~~~--~~-------~~i~q~Difd~~~~a~~l~g~DaVIsA~   70 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEA-LKRGHEVTAIVRNASKLAAR--QG-------VTILQKDIFDLTSLASDLAGHDAVISAF   70 (211)
T ss_pred             CeEEEEecCchhHHHHHHHH-HhCCCeeEEEEeChHhcccc--cc-------ceeecccccChhhhHhhhcCCceEEEec
Confidence            57999998 99999999984 78899999988876553210  00       0001111223345667889999998876


Q ss_pred             CCC
Q 022672          153 VLD  155 (294)
Q Consensus       153 Plt  155 (294)
                      -..
T Consensus        71 ~~~   73 (211)
T COG2910          71 GAG   73 (211)
T ss_pred             cCC
Confidence            543

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=91.43  E-value=0.59  Score=43.65  Aligned_cols=108  Identities=18%  Similarity=0.304  Sum_probs=58.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhh-cCCCE-EEEEc-CCchhHH-HHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCC
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVE-GFKMN-LIYYD-LYQATRL-EKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREAD  146 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~-~~g~~-V~~~d-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aD  146 (294)
                      +++|||+|. |.+|+.+.++|.. .|-+. +..+. .+..... ..|           ......... ..+. ..++++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f-----------~~~~~~v~~~~~~~-~~~~~~D   68 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEF-----------GGKSIGVPEDAADE-FVFSDVD   68 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccc-----------cCccccCccccccc-cccccCC
Confidence            368999976 9999999999865 56665 33332 2211110 111           000011100 0111 2356899


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC---C--------cccCHHHHHHHHHcC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR---G--------PVIDEVALVEHLKQN  197 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR---G--------~~vd~~aL~~aL~~g  197 (294)
                      +++.|.|.. .++.+.  .  +..+.|+++|+-+.   -        .-|+.++|.+..+.|
T Consensus        69 ivf~~ag~~-~s~~~~--p--~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg  125 (334)
T COG0136          69 IVFFAAGGS-VSKEVE--P--KAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRG  125 (334)
T ss_pred             EEEEeCchH-HHHHHH--H--HHHHcCCEEEeCCcccccCCCCCEecCCcCHHHHHhhhhCC
Confidence            999999842 222211  1  22356777777663   1        247778887777755

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=91.37  E-value=0.5  Score=45.52  Aligned_cols=80  Identities=19%  Similarity=0.234  Sum_probs=48.8

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      ..+.||++.|.|. |.||+++|+.| ...|++|+..+++.....+.. ....  . .......+....+++.+.+.+.|+
T Consensus       174 ~sl~gK~VLITGASgGIG~aLA~~L-a~~G~~Vi~l~r~~~~l~~~~-~~~~--~-~v~~v~~Dvsd~~~v~~~l~~IDi  248 (406)
T PRK07424        174 LSLKGKTVAVTGASGTLGQALLKEL-HQQGAKVVALTSNSDKITLEI-NGED--L-PVKTLHWQVGQEAALAELLEKVDI  248 (406)
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHH-hhcC--C-CeEEEEeeCCCHHHHHHHhCCCCE
Confidence            3578999999998 89999999998 467999999987654321111 0000  0 000000111112345566788999


Q ss_pred             EEEccC
Q 022672          148 ISLHPV  153 (294)
Q Consensus       148 V~l~~P  153 (294)
                      ++.+..
T Consensus       249 LInnAG  254 (406)
T PRK07424        249 LIINHG  254 (406)
T ss_pred             EEECCC
Confidence            887653

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=91.36  E-value=1.9  Score=41.29  Aligned_cols=113  Identities=19%  Similarity=0.114  Sum_probs=58.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhc--CC----CEEEEE--cCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEG--FK----MNLIYY--DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  144 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~--~g----~~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  144 (294)
                      .+|+|||. |.+|..+|-.|+.+  ++    ..+..+  |...+.......+-... ..... .  ......+-.+.+++
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~-a~~~~-~--~v~i~~~~y~~~kd  120 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDS-LYPLL-R--EVSIGIDPYEVFED  120 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHh-hhhhc-C--ceEEecCCHHHhCC
Confidence            47999999 99999999876432  23    134444  66554432222221100 00000 0  11111234477899


Q ss_pred             CCEEEEccCCC--c-cccc--------cc---cHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022672          145 ADVISLHPVLD--K-TTYH--------LI---NKERLATMKKEAILVNCSRGPVIDEVALVE  192 (294)
Q Consensus       145 aDiV~l~~Plt--~-~t~~--------li---~~~~l~~mk~gailIN~aRG~~vd~~aL~~  192 (294)
                      ||+|+++.-..  + +++-        ++   ....-+.-+|++++|.++  ..+|.-..+-
T Consensus       121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v~  180 (387)
T TIGR01757       121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALIA  180 (387)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHHH
Confidence            99999876431  1 1221        11   111222244888998886  5566555443

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=91.36  E-value=1.3  Score=41.11  Aligned_cols=37  Identities=24%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchh
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT  109 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~  109 (294)
                      .|++|.|.|.|.+|...++. ++.+|.+ |++.+++...
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~-a~~~G~~~v~~~~~~~~~  197 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQC-AVALGAKSVTAIDINSEK  197 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEECCCHHH
Confidence            57899999999999999987 4889997 6778776543

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=91.31  E-value=0.75  Score=43.72  Aligned_cols=107  Identities=20%  Similarity=0.282  Sum_probs=57.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCE---EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMN---LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+|||||. |.+|+.+.+++...-...   +..+.......  .        ...-...........+. +.++++|+++
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~--~--------~~~f~g~~~~v~~~~~~-~~~~~~Divf   70 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGG--A--------APSFGGKEGTLQDAFDI-DALKKLDIII   70 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCC--c--------ccccCCCcceEEecCCh-hHhcCCCEEE
Confidence            47999998 999999998444544454   55554432111  0        00001111111111223 3458899999


Q ss_pred             EccCCCccccccccHHHHhcC-CCC--cEEEEcC---CCc--------ccCHHHHHHHHHcC
Q 022672          150 LHPVLDKTTYHLINKERLATM-KKE--AILVNCS---RGP--------VIDEVALVEHLKQN  197 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~m-k~g--ailIN~a---RG~--------~vd~~aL~~aL~~g  197 (294)
                      +++|. ..+     ++....+ +.|  +++|+.|   |-.        =|+.++|..+.+.|
T Consensus        71 ~a~~~-~~s-----~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g  126 (369)
T PRK06598         71 TCQGG-DYT-----NEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANG  126 (369)
T ss_pred             ECCCH-HHH-----HHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcC
Confidence            99983 222     2222222 457  6788887   422        25566666544444

>PRK08628 short chain dehydrogenase; Provisional

Probab=91.30  E-value=0.55  Score=41.37  Aligned_cols=39  Identities=21%  Similarity=0.169  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .+.|+++.|.|. |.||+.+|+.|+ ..|++|+..++....
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~-~~G~~v~~~~r~~~~   43 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLA-EEGAIPVIFGRSAPD   43 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHH-HcCCcEEEEcCChhh
Confidence            588999999995 789999999984 789999888776543

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=91.23  E-value=1.3  Score=41.77  Aligned_cols=38  Identities=32%  Similarity=0.380  Sum_probs=31.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~  109 (294)
                      -.|.+|.|+|.|.||...++. ++.+|+ +|++.+++...
T Consensus       184 ~~g~~VlV~G~G~iG~~a~q~-Ak~~G~~~Vi~~~~~~~~  222 (368)
T TIGR02818       184 EEGDTVAVFGLGGIGLSVIQG-ARMAKASRIIAIDINPAK  222 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHH
Confidence            357899999999999999987 589999 79988876543

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=91.17  E-value=1.3  Score=40.81  Aligned_cols=106  Identities=15%  Similarity=0.082  Sum_probs=65.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhcCCCE-EEEEcCC--chhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CC
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--AD  146 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~~g~~-V~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aD  146 (294)
                      ..+|.|.|. |.+|+.+.+.| ..+|.+ ++..+|.  ...                   -.+...+.+++|+-..  .|
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l-~~~g~~~v~pVnp~~~~~~-------------------v~G~~~y~sv~dlp~~~~~D   67 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQM-LAYGTNIVGGVTPGKGGTT-------------------VLGLPVFNTVAEAVEATGAN   67 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHH-HHCCCCEEEEECCCCCCCe-------------------EeCeeccCCHHHHhhccCCC
Confidence            346899998 88999999987 466664 4456765  211                   1223446789998887  89


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  201 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g  201 (294)
                      +.++++|. +.+...+ ++..+.=-+.++++..+- ..-++..|.+..+++.++-
T Consensus        68 lAvi~vp~-~~v~~~l-~e~~~~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girv  119 (291)
T PRK05678         68 ASVIYVPP-PFAADAI-LEAIDAGIDLIVCITEGI-PVLDMLEVKAYLERKKTRL  119 (291)
T ss_pred             EEEEEcCH-HHHHHHH-HHHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEE
Confidence            99999993 3334433 333332223444444433 3333447888888776553

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=91.16  E-value=1.8  Score=40.17  Aligned_cols=96  Identities=20%  Similarity=0.181  Sum_probs=57.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC----HHHHhh--
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDEVLR--  143 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell~--  143 (294)
                      -.|++|.|.|.|.+|+.+++.+ +..|+ +|++.+++.... +. ...+       +....-.....+    +.++..  
T Consensus       171 ~~g~~vlI~g~g~vG~~a~q~a-~~~G~~~v~~~~~~~~~~-~~-~~~~-------ga~~~i~~~~~~~~~~l~~~~~~~  240 (351)
T cd08233         171 KPGDTALVLGAGPIGLLTILAL-KAAGASKIIVSEPSEARR-EL-AEEL-------GATIVLDPTEVDVVAEVRKLTGGG  240 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HH-HHHh-------CCCEEECCCccCHHHHHHHHhCCC
Confidence            3578999999999999999874 89999 788887665432 11 1111       110000000112    223332  


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      ..|+++-+... +.+    -.+.+..|+++..++.++.
T Consensus       241 ~~d~vid~~g~-~~~----~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         241 GVDVSFDCAGV-QAT----LDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CCCEEEECCCC-HHH----HHHHHHhccCCCEEEEEcc
Confidence            37888887752 111    1456777888888888754

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK09186 flagellin modification protein A; Provisional

Probab=91.15  E-value=0.69  Score=40.58  Aligned_cols=38  Identities=34%  Similarity=0.414  Sum_probs=32.2

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      +.||++.|.|. |.||+.+|+.| ..-|++|++.+++...
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l-~~~g~~v~~~~r~~~~   40 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAI-LEAGGIVIAADIDKEA   40 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEecChHH
Confidence            56899999997 89999999998 4779999998876543

>PRK06125 short chain dehydrogenase; Provisional

Probab=91.14  E-value=0.7  Score=40.84  Aligned_cols=38  Identities=26%  Similarity=0.216  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .+.||++.|.|. |.||+++|+.|+ ..|++|++.+++..
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~-~~G~~V~~~~r~~~   42 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFA-AEGCHLHLVARDAD   42 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            467899999998 789999999984 67999999988754

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=91.13  E-value=1.3  Score=40.94  Aligned_cols=37  Identities=22%  Similarity=0.151  Sum_probs=31.3

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      -.|.+|.|.|. |.+|+.+++. ++.+|++|++.+++..
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiql-Ak~~G~~Vi~~~~~~~  187 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQL-AKLKGCYVVGSAGSDE  187 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEeCCHH
Confidence            35889999998 9999999987 5899999988776644

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=91.10  E-value=0.65  Score=40.56  Aligned_cols=35  Identities=23%  Similarity=0.198  Sum_probs=28.9

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           71 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        71 l~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      +.++++-|.| .|.||+.+|++|+ ..|++|++..++
T Consensus         4 ~~~~~~lItG~s~~iG~~la~~l~-~~g~~v~~~~~~   39 (247)
T PRK12935          4 LNGKVAIVTGGAKGIGKAITVALA-QEGAKVVINYNS   39 (247)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HcCCEEEEEcCC
Confidence            6789999998 5999999999984 689998875443

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=91.06  E-value=0.74  Score=43.22  Aligned_cols=30  Identities=30%  Similarity=0.540  Sum_probs=22.9

Q ss_pred             EEEEEcCChHHHHHHHHHhh-cC--CCEEEEEc
Q 022672           75 TVGVIGAGRIGSAYARMMVE-GF--KMNLIYYD  104 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~-~~--g~~V~~~d  104 (294)
                      +|||.|+|+||+.+.|.|.. .|  ..++++.+
T Consensus         3 ~IaInGfGrIGR~~lr~l~e~~~~~~l~vvain   35 (336)
T PRK13535          3 RVAINGFGRIGRNVLRALYESGRRAEITVVAIN   35 (336)
T ss_pred             EEEEECcCHHHHHHHHHHHhcCCCCceEEEEec
Confidence            79999999999999998643 23  46666554

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=91.02  E-value=0.75  Score=48.23  Aligned_cols=112  Identities=25%  Similarity=0.320  Sum_probs=66.7

Q ss_pred             CEEEEEcCChHHHHH-HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~v-A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      +++.|+|+|..|.+. |+.| +..|++|.++|.......+.        +...+   +.+.. ..-.+.+.++|+|+...
T Consensus         5 ~~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~--------L~~~g---i~~~~-g~~~~~~~~~d~vV~Sp   71 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEK--------LKAKG---ARFFL-GHQEEHVPEDAVVVYSS   71 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHH--------HHHCC---CEEeC-CCCHHHcCCCCEEEECC
Confidence            369999999999998 9987 68999999999765332221        11111   11111 11235567899988765


Q ss_pred             CCCcccc----------ccccH-HHHhc-CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672          153 VLDKTTY----------HLINK-ERLAT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       153 Plt~~t~----------~li~~-~~l~~-mk~-gailIN~aRG~~vd~~aL~~aL~~g~  198 (294)
                      .-.+++.          .++.+ +++.. ++. ..+-|--+.|+.--..=+...|++..
T Consensus        72 gI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g  130 (809)
T PRK14573         72 SISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK  130 (809)
T ss_pred             CcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            4333222          22332 23223 332 34556667788877777777776633

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.02  E-value=0.8  Score=41.98  Aligned_cols=39  Identities=26%  Similarity=0.295  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .++.||++.|.|. |.||+.+|+.|+ ..|++|+..++...
T Consensus         8 ~~l~~k~~lVTGas~gIG~~ia~~L~-~~Ga~Vv~~~~~~~   47 (306)
T PRK07792          8 TDLSGKVAVVTGAAAGLGRAEALGLA-RLGATVVVNDVASA   47 (306)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEecCCch
Confidence            4689999999987 789999999984 67999999887543

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=90.96  E-value=5.9  Score=39.63  Aligned_cols=198  Identities=16%  Similarity=0.137  Sum_probs=114.5

Q ss_pred             cEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhh---
Q 022672           18 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE---   94 (294)
Q Consensus        18 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~---   94 (294)
                      |.+.|.-=   +-+|--+++-+|+..|-                     .|..|.+.+|.|.|.|..|-.+|+.|..   
T Consensus       266 i~~FnDDi---QGTaaV~lAgll~Alr~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~m~  321 (559)
T PTZ00317        266 YRCFNDDI---QGTGAVIAAGFLNALKL---------------------SGVPPEEQRIVFFGAGSAAIGVANNIADLAA  321 (559)
T ss_pred             CCEecccc---hhHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHHHHHH
Confidence            55555432   33556677888887772                     2356899999999999999999998742   


Q ss_pred             cCCC-------EEEEEcCCch---hH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC--CEEEEccCCCcccc
Q 022672           95 GFKM-------NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTY  159 (294)
Q Consensus        95 ~~g~-------~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~~Plt~~t~  159 (294)
                      ..|.       +++.+|+..-   .+   .......|.   .......  .....+|.|+++..  |+++=+-    ..-
T Consensus       322 ~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa---~~~~~~~--~~~~~~L~e~v~~~KPtvLIG~S----~~~  392 (559)
T PTZ00317        322 EYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFA---RTDISAE--DSSLKTLEDVVRFVKPTALLGLS----GVG  392 (559)
T ss_pred             HcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHh---ccccccc--cccCCCHHHHHhccCCCEEEEec----CCC
Confidence            2466       7888886521   00   111111111   1000000  00135899999998  8887543    235


Q ss_pred             ccccHHHHhcCCC---CcEEEEcCCCcccC---HHHHHHHHHcCC-cceEEeeCCCCCCCC-C---CCccCCCCeEEccC
Q 022672          160 HLINKERLATMKK---EAILVNCSRGPVID---EVALVEHLKQNP-MFRVGLDVFEDEPYM-K---PGLSEMKNAIVVPH  228 (294)
Q Consensus       160 ~li~~~~l~~mk~---gailIN~aRG~~vd---~~aL~~aL~~g~-i~ga~lDV~~~EP~~-~---~~L~~~~nviiTPH  228 (294)
                      +.|+++.++.|.+   ..++.=.|+...--   .++.+++ .+|+ |.+.+.   .-+|.. +   ..--+..|+++-|=
T Consensus       393 g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~-T~Grai~AtGs---pf~pv~~~G~~~~p~Q~NN~~iFPG  468 (559)
T PTZ00317        393 GVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKW-TNGRAIVASGS---PFPPVTLNGKTIQPSQGNNLYVFPG  468 (559)
T ss_pred             CCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhh-ccCCEEEEECC---CCCCcccCCeeeccCcCcceeeccc
Confidence            7899999999974   89999898876422   3333332 2444 333332   112221 1   11235679999998


Q ss_pred             CCCC-----cHHHHHHHHHHHHHHHHHHH
Q 022672          229 IASA-----SKWTREGMATLAALNVLGKI  252 (294)
Q Consensus       229 ia~~-----t~~~~~~~~~~~~~nl~~~~  252 (294)
                      ++-.     .....+.|...+++-+.++.
T Consensus       469 iglG~l~~~a~~Itd~m~~aAA~aLA~~v  497 (559)
T PTZ00317        469 VGLGCAIAQPSYIPDEMLIAAAASLATLV  497 (559)
T ss_pred             hhhhhHhhcccCCCHHHHHHHHHHHHhhC
Confidence            7621     11123445555566665554

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=90.95  E-value=0.32  Score=42.08  Aligned_cols=37  Identities=30%  Similarity=0.413  Sum_probs=31.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCC
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  106 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~  106 (294)
                      ..|++++|.|+|+|.+|.++++.|+ ..|+ ++..+|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~-~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLV-LAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEECC
Confidence            4689999999999999999999985 5677 47778755

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=90.90  E-value=1.2  Score=40.74  Aligned_cols=98  Identities=13%  Similarity=0.078  Sum_probs=57.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHH--HH--hhcC
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EV--LREA  145 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--el--l~~a  145 (294)
                      ..|.+|.|+|.|.+|+.+++.+ +..|++ |++.+++.... +.. ..+       +....-.....+..  ..  -...
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la-~~~G~~~v~~~~~~~~~~-~~~-~~~-------g~~~~~~~~~~~~~~~~~~~~~~v  227 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLL-KLNGASRVTVAEPNEEKL-ELA-KKL-------GATETVDPSREDPEAQKEDNPYGF  227 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHH-HHH-HHh-------CCeEEecCCCCCHHHHHHhcCCCC
Confidence            3578999999999999999874 899997 78787765432 111 111       10000000001111  11  1457


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      |+++-+.+..     ....+.+..|+++..+|.++..+
T Consensus       228 d~v~~~~~~~-----~~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         228 DVVIEATGVP-----KTLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             cEEEECCCCh-----HHHHHHHHHHhcCCEEEEEecCC
Confidence            8888776521     12255667788888888886544

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=90.90  E-value=0.69  Score=42.96  Aligned_cols=100  Identities=22%  Similarity=0.266  Sum_probs=57.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc--c-CCHHHHhhcCCE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--A-SSMDEVLREADV  147 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~ell~~aDi  147 (294)
                      .+|+|||. |.+|.++|-.|+ ..+  -++..+|.. ... ....+     +.... .......  . +++.+.+++||+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~-~~~~~~elvLiDi~-~a~-g~alD-----L~~~~-~~~~i~~~~~~~~~y~~~~daDi   71 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIV-NTP-GVAAD-----LSHIN-TPAKVTGYLGPEELKKALKGADV   71 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCCcEEEEEecC-ccc-eeehH-----hHhCC-CcceEEEecCCCchHHhcCCCCE
Confidence            47999999 999999998763 334  478999986 211 11111     11111 1111221  1 245677899999


Q ss_pred             EEEccCCC--c-ccccc-c--cH-------HHHhcCCCCcEEEEcCCC
Q 022672          148 ISLHPVLD--K-TTYHL-I--NK-------ERLATMKKEAILVNCSRG  182 (294)
Q Consensus       148 V~l~~Plt--~-~t~~l-i--~~-------~~l~~mk~gailIN~aRG  182 (294)
                      |+++.-..  + ++|-- +  |.       +.+....|++++|+++-.
T Consensus        72 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          72 VVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            98876532  1 12211 1  11       223444689999999653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02206 UDP-glucuronate decarboxylase

Probab=90.87  E-value=0.8  Score=44.58  Aligned_cols=38  Identities=29%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             CcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           68 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        68 g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      |..-.+++|.|.|. |-||+.+++.| ...|.+|++.|+.
T Consensus       114 ~~~~~~~kILVTGatGfIGs~Lv~~L-l~~G~~V~~ld~~  152 (442)
T PLN02206        114 GLKRKGLRVVVTGGAGFVGSHLVDRL-MARGDSVIVVDNF  152 (442)
T ss_pred             ccccCCCEEEEECcccHHHHHHHHHH-HHCcCEEEEEeCC
Confidence            33446799999995 99999999998 5779999998864

>PRK07890 short chain dehydrogenase; Provisional

Probab=90.86  E-value=0.59  Score=41.08  Aligned_cols=37  Identities=22%  Similarity=0.220  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      +.+|++.|.|. |.||+++|+.|+ ..|++|+..+++..
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~-~~G~~V~~~~r~~~   40 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAA-RAGADVVLAARTAE   40 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            67899999986 899999999984 78999999998764

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=90.84  E-value=0.67  Score=40.95  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=31.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      .+.||++.|.|. |.||+.+|+.|+ ..|++|+..++.
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~-~~G~~v~~~~~~   48 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALA-KAGADIIITTHG   48 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCC
Confidence            588999999998 899999999984 789999988776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		7e-38
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		1e-35
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		1e-31
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		4e-29
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		5e-27
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		5e-26
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		9e-26
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		5e-24
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		5e-24
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		7e-24
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		8e-24
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		9e-24
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		1e-23
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		6e-23
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		7e-23
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		8e-23
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		8e-23
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		8e-23
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		9e-23
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		9e-23
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-22
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		3e-22
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		3e-22
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		6e-22
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		7e-22
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		9e-22
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		9e-22
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		1e-21
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		2e-21
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		3e-21
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		6e-21
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		8e-21
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		6e-19
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		1e-17
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		2e-17
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		2e-17
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		2e-17
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		5e-17
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		6e-17
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		4e-15
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		4e-15
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		6e-13
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		8e-13
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		2e-12
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		3e-11
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		3e-11
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		5e-11
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		5e-11
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		2e-10
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		3e-10
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		2e-08
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		2e-08
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		2e-08
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		2e-08
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-07
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		3e-07
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		8e-04

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  154 bits (388), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 101/257 (39%), Positives = 145/257 (56%), Gaps = 21/257 (8%)
Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-- 59
           AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +   
Sbjct: 75  AVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKR 134
Query: 60  --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 117
              W P  F+G  + G+T+G+IG GRIG A A+   +GF M ++YY   +   +E+ + A
Sbjct: 135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNMRILYYSRTRKEEVERELNA 193
Query: 118 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 177
             +F                ++++LRE+D + L   L + TYHLIN+ERL  MKK AIL+
Sbjct: 194 --EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILI 237
Query: 178 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 237
           N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L ++ N ++ PHI SAS   R
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 238 EGMATLAALNVLGKIKG 254
           EGMA L A N++   +G
Sbjct: 298 EGMAELVAKNLIAFKRG 314

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/257 (38%), Positives = 142/257 (55%), Gaps = 21/257 (8%)
Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-- 59
           AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +   
Sbjct: 75  AVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKR 134
Query: 60  --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 117
              W P  F+G  + G+T+G+IG GRIG A A+   +GF   ++YY   +   +E+ + A
Sbjct: 135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNXRILYYSRTRKEEVERELNA 193
Query: 118 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 177
             +F                ++++LRE+D + L   L + TYHLIN+ERL   KK AIL+
Sbjct: 194 --EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILI 237
Query: 178 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 237
           N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L ++ N ++ PHI SAS   R
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 238 EGMATLAALNVLGKIKG 254
           EG A L A N++   +G
Sbjct: 298 EGXAELVAKNLIAFKRG 314

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/255 (38%), Positives = 145/255 (56%), Gaps = 26/255 (10%)
Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW 61
           +VG ++VD+ AA + GI V +TPGV                 RR+VE   + R GL+  W
Sbjct: 73  SVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAW 132
Query: 62  LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
            P L +G  L+G T+G++G GRIG A A+  +  F M ++Y+                  
Sbjct: 133 HPELLLGLDLQGLTLGLVGMGRIGQAVAKRAL-AFGMRVVYH------------------ 173
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
             A   +P+ +    S++E+L+EADV+SLH  L   T+ L+N+ERL  MK+ AIL+N +R
Sbjct: 174 --ARTPKPLPYP-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTAR 230
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREG 239
           G ++D  ALVE L+ + +F  GLDV + EP + PG  L  + NA++ PHI SA + TRE 
Sbjct: 231 GALVDTEALVEALRGH-LFGAGLDVTDPEP-LPPGHPLYALPNAVITPHIGSAGRTTRER 288
Query: 240 MATLAALNVLGKIKG 254
           MA +A  N+L  ++G
Sbjct: 289 MAEVAVENLLAVLEG 303

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/253 (36%), Positives = 136/253 (53%), Gaps = 21/253 (8%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
           VG +N+DV AA + GI V N P                   R+I  AD  MR G+   W 
Sbjct: 75  VGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGV---WA 131
Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
               +G  L+G+T+G+IG GRIG   A++      MN++ YD Y      K V   G+F+
Sbjct: 132 KKEAMGIELEGKTIGIIGFGRIGYQVAKI-ANALGMNILLYDPYPNEERAKEVN--GKFV 188
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                          ++ +L+E+DV+++H  L ++TYHLIN+ERL  MKK AIL+N SRG
Sbjct: 189 --------------DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRG 234
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTREGMA 241
           PV+D  ALV+ LK+  +   GLDVFE+EP  K   L++  N ++ PHI +++   +E   
Sbjct: 235 PVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAG 294
Query: 242 TLAALNVLGKIKG 254
              A  V+  +KG
Sbjct: 295 VEVAEKVVKILKG 307

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 120/238 (50%), Gaps = 17/238 (7%)
Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
           ++VGY+++D  AA   GI V +TP V                 RR  EAD  +R+G + G
Sbjct: 101 LSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWPG 160
Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           W P   +G  L G+ +G+ G GRIG A A     GF + + Y++    TRL   +     
Sbjct: 161 WGPTQLLGXGLTGRRLGIFGXGRIGRAIA-TRARGFGLAIHYHN---RTRLSHAL----- 211
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                 E+   +    ++D +L  +D+  +           ++ +R+A + + A+++N S
Sbjct: 212 ------EEGAIYH--DTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINIS 263
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 238
           RG +I++ AL+E L+   +F  GLDVF +EP + P    + N  + PHI SA+  TR+
Sbjct: 264 RGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRD 321

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 122/258 (47%), Gaps = 17/258 (6%)
Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
           M+VG +++ ++   K GI VG TP V                 RR+ EA E ++ G +  
Sbjct: 83  MSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTS 142
Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           W P    G  L   TVG+IG GRIG A AR + + F +    Y   Q  R E+      +
Sbjct: 143 WKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYTGRQP-RPEEAAEFQAE 200
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           F+              S  E+  ++D I +   L   T  L NK+    MK+ A+ +N S
Sbjct: 201 FV--------------STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINIS 246
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNAIVVPHIASASKWTREG 239
           RG V+++  L + L    +   GLDV   EP      L  +KN +++PHI SA+  TR  
Sbjct: 247 RGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNT 306
Query: 240 MATLAALNVLGKIKGYPI 257
           M+ LAA N+L  ++G P+
Sbjct: 307 MSLLAANNLLAGLRGEPM 324

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score =  114 bits (284), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 115/243 (47%), Gaps = 15/243 (6%)
Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW 61
           ++G++++D++A    GI VGN P                   RR  E ++ +R   + GW
Sbjct: 75  SIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGW 134
Query: 62  LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
            P   VG  L  +T+G+ G G IG A A+   +GF M++ Y+D ++A+            
Sbjct: 135 EPLELVGEKLDNKTLGIYGFGSIGQALAKR-AQGFDMDIDYFDTHRAS------------ 181
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
             ++ E         S+D +L  +   SL+      T +  NK  + ++ + AI+VN +R
Sbjct: 182 --SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTAR 239
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 241
           G ++D   +V  L+   +   G DVF  EP +  G  ++ N  + PHI SA+   RE MA
Sbjct: 240 GDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMA 299
Query: 242 TLA 244
             A
Sbjct: 300 HQA 302

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 120/257 (46%), Gaps = 22/257 (8%)
Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
            +VG + VD+    + G+ V NTP V                 RRI E D+++R G +  
Sbjct: 94  FSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK- 152
Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
              +  +     G+ VG+IG GRIG A A    E F   + Y+     +R +K  T Y  
Sbjct: 153 -FGDFKLTTKFSGKRVGIIGLGRIGLAVAER-AEAFDCPISYF-----SRSKKPNTNYTY 205
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
           +               S+ E+   +D++ +   L   T H+IN+E +  +  + +L+N  
Sbjct: 206 Y--------------GSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIG 251
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGP +DE  LV  L +  +   GLDVFE EP +   L  ++N +++PH+ S +  TR+ M
Sbjct: 252 RGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVM 311
Query: 241 ATLAALNVLGKIKGYPI 257
           A L   N+     G P+
Sbjct: 312 ADLVVGNLEAHFSGKPL 328

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 123/259 (47%), Gaps = 26/259 (10%)
Query: 4   GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
           GY+NVD+ AA + GIAV N P                   RR     + +R G     + 
Sbjct: 79  GYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVE 138
Query: 64  NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
            +         ++G+T+G+IG GR G A A +  + F  ++I+YD Y             
Sbjct: 139 QIREVASGAARIRGETLGLIGFGRTGQAVA-VRAKAFGFSVIFYDPY------------- 184
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
             L+   E+ +  +R  ++ ++L ++D +SLH  L++  +HLIN   +  M++ A LVN 
Sbjct: 185 --LQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNA 242
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIA----SAS 233
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A     AS
Sbjct: 243 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQAS 302
Query: 234 KWTREGMATLAALNVLGKI 252
              RE  AT     + G+I
Sbjct: 303 LEMREAAATEIRRAITGRI 321

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 118/256 (46%), Gaps = 17/256 (6%)
Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW 61
           +VG +++ ++   K GI VG TP V                 RR+ EA E ++ G +  W
Sbjct: 82  SVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSW 141
Query: 62  LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
            P    G  L   TVG+IG GRIG A AR + + F +    Y   Q  R E+      +F
Sbjct: 142 KPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYTGRQP-RPEEAAEFQAEF 199
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
           +              S  E+  ++D I +   L   T  L NK+     K+ A+ +N SR
Sbjct: 200 V--------------STPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISR 245
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNAIVVPHIASASKWTREGM 240
           G V+++  L + L    +   GLDV   EP      L  +KN +++PHI SA+  TR   
Sbjct: 246 GDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTX 305
Query: 241 ATLAALNVLGKIKGYP 256
           + LAA N+L  ++G P
Sbjct: 306 SLLAANNLLAGLRGEP 321

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score =  107 bits (267), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 122/257 (47%), Gaps = 22/257 (8%)
Query: 4   GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 98  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVE 157
Query: 64  NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y +  +E+   A G
Sbjct: 158 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPYLSDGIER---ALG 213
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
                        +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 214 ------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 261
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTR 237
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A  S+   
Sbjct: 262 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQAS 321
Query: 238 EGMATLAALNVLGKIKG 254
             M   AA  +   I G
Sbjct: 322 IEMREEAAREIRRAITG 338

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score =  107 bits (267), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 122/257 (47%), Gaps = 22/257 (8%)
Query: 4   GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 98  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVE 157
Query: 64  NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y +  +E+   A G
Sbjct: 158 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPYLSDGIER---ALG 213
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
                        +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 214 ------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 261
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTR 237
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A  S+   
Sbjct: 262 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQAS 321
Query: 238 EGMATLAALNVLGKIKG 254
             M   AA  +   I G
Sbjct: 322 IEMREEAAREIRRAITG 338

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 22/257 (8%)
Query: 4   GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 95  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVE 154
Query: 64  NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y             
Sbjct: 155 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPY------------- 200
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
             L    E+ +  +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 201 --LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 258
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTR 237
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A  S+   
Sbjct: 259 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQAS 318
Query: 238 EGMATLAALNVLGKIKG 254
             M   AA  +   I G
Sbjct: 319 IEMREEAAREIRRAITG 335

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 24/258 (9%)
Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW 61
           + GY+N+D+  A K GI V    G+                 R+I  AD+F+R G ++  
Sbjct: 72  SAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH 131
Query: 62  LPNLFVG----NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 117
              ++ G      L G+ VG++G G IG A AR ++  F + L Y+  ++   +EK + A
Sbjct: 132 -AKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIP-FGVKLYYWSRHRKVNVEKELKA 189
Query: 118 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 177
                           R   +DE+L ++D++ L   L + TYH+IN+ER+  ++ +  LV
Sbjct: 190 ----------------RYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLV 232
Query: 178 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK-NAIVVPHIASASKWT 236
           N  RG ++DE A+ E +KQ  +     DVFE EP  +  L + +   ++ PH A  +   
Sbjct: 233 NIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEA 292
Query: 237 REGMATLAALNVLGKIKG 254
           +E +   A  N+L  ++G
Sbjct: 293 QEDVGFRAVENLLKVLRG 310

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score =  104 bits (259), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 4   GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 78  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 137
Query: 64  NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 138 R-FYGTGLDNATVGFLGXGAIGLAXADRL-QGWGATLQYH--------------AAKALD 181
Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 182 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 240
Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 235
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 241 VVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 300
Query: 236 TREGMATLAALNVLGKIKG 254
            R  +   AA N+L  + G
Sbjct: 301 VRLEIERCAAQNILQALAG 319

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 119/257 (46%), Gaps = 22/257 (8%)
Query: 4   GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 98  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVE 157
Query: 64  NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
            +         ++G+T+G+IG  R+G A A +  + F  N+++YD Y             
Sbjct: 158 QIREVASGAARIRGETLGIIGLERVGQAVA-LRAKAFGFNVLFYDPY------------- 203
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
             L    E+ +  +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 204 --LSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 261
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTR 237
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A  S+   
Sbjct: 262 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQAS 321
Query: 238 EGMATLAALNVLGKIKG 254
             M   AA  +   I G
Sbjct: 322 IEMREEAAREIRRAITG 338

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 116/257 (45%), Gaps = 20/257 (7%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
            G +NVD+ AA + GI V NTP                   R+I +A   M+ G    W 
Sbjct: 98  TGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDG---KWE 154
Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
              F+G  L G+T+G++G GRIG   A  M + F M  I YD   +  +     ++G   
Sbjct: 155 RKKFMGTELNGKTLGILGLGRIGREVATRM-QSFGMKTIGYDPIISPEVS---ASFG--- 207
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                      +   ++E+    D I++H  L  +T  L+N    A  KK   +VNC+RG
Sbjct: 208 ----------VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARG 257
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 242
            ++DE AL+  L+        LDVF +EP     L + +N I  PH+ +++K  +     
Sbjct: 258 GIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGE 317
Query: 243 LAALNVLGKIKGYPIWG 259
             A+  +  +KG  + G
Sbjct: 318 EIAVQFVDMVKGKSLTG 334

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 122/279 (43%), Gaps = 34/279 (12%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
           VG +NVDV+AA   G+ V N P                   R+I  AD  +R      W 
Sbjct: 74  VGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR---EHTWK 130
Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
            + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y                
Sbjct: 131 RSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY---------------- 173
Query: 123 KANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 175
                  V+  RA+       S+D++L  AD IS+H      T  LI+KE LA  K   I
Sbjct: 174 -------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVI 226
Query: 176 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKW 235
           +VN +RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH+ +++  
Sbjct: 227 IVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAE 286
Query: 236 TREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 274
            ++   T  A +V   + G  +    N     +NE   P
Sbjct: 287 AQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVAP 325

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  103 bits (258), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 122/279 (43%), Gaps = 34/279 (12%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
           VG +NVDV+AA   G+ V N P                   R+I  AD  +R      W 
Sbjct: 75  VGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR---EHTWK 131
Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
            + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y                
Sbjct: 132 RSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY---------------- 174
Query: 123 KANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 175
                  V+  RA+       S+D++L  AD IS+H      T  LI+KE LA  K   I
Sbjct: 175 -------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVI 227
Query: 176 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKW 235
           +VN +RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH+ +++  
Sbjct: 228 IVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAE 287
Query: 236 TREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 274
            ++   T  A +V   + G  +    N     +NE   P
Sbjct: 288 AQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVAP 326

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score =  103 bits (258), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 25/259 (9%)
Query: 4   GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 64  NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
             F G  L   TVG +G G IG A A  + +G+   L Y++               + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 235
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 236 TREGMATLAALNVLGKIKG 254
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 25/259 (9%)
Query: 4   GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 64  NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
             F G  L   TVG +G G IG A A  + +G+   L Y++               + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 235
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 236 TREGMATLAALNVLGKIKG 254
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 4   GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 64  NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 235
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 236 TREGMATLAALNVLGKIKG 254
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 4   GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 63
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 64  NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 123
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 183
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 235
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 236 TREGMATLAALNVLGKIKG 254
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score =  101 bits (251), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 118/266 (44%), Gaps = 35/266 (13%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
           VG +N+D++ A + G  + N P                   R+    DE M A     W 
Sbjct: 79  VGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKM-AKRDLRWA 137
Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
           P   +G  ++ Q VGV+G G IG  + R+M EGF   +I YD+++   LEK     G ++
Sbjct: 138 PT--IGREVRDQVVGVVGTGHIGQVFMRIM-EGFGAKVIAYDIFKNPELEK----KGYYV 190
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                         S+D++ ++ADVISLH        H+IN + +A MK   ++VNCSRG
Sbjct: 191 -------------DSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRG 237
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDE-------------PYMK-PGLSEMKNAIVVPH 228
            ++D  A++  L    +F   +D +EDE             P  +   L +  N +V PH
Sbjct: 238 RLVDTDAVIRGLDSGKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPH 297
Query: 229 IASASKWTREGMATLAALNVLGKIKG 254
            A  +      M   A  N L  I G
Sbjct: 298 TAFYTTHAVRNMVVKAFNNNLKLING 323

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 117/248 (47%), Gaps = 29/248 (11%)
Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
            +VG N V++ AA K GI V N P                   RRI        AG   G
Sbjct: 87  FSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAG---G 143
Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           W         ++G+T+G++G G IGS    +  E   M + YYD   + +L+     YG 
Sbjct: 144 WEKTAIGSREVRGKTLGIVGYGNIGSQVGNL-AESLGMTVRYYD--TSDKLQ-----YGN 195
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                       K A+S+DE+L+ +DV+SLH    K+T  LI + +L  MKK A L+N +
Sbjct: 196 V-----------KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNA 244
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEP------YMKPGLSEMKNAIVVPHIASASK 234
           RG  +D  AL + L++  +    +DVF  EP      +  P L  ++N I+ PHI  +++
Sbjct: 245 RGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTP-LQGLENVILTPHIGGSTE 303
Query: 235 WTREGMAT 242
             +E + T
Sbjct: 304 EAQERIGT 311

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 113/249 (45%), Gaps = 18/249 (7%)
Query: 4   GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW-L 62
           G++ +D++A N+ G+A  N+ G                  R    ++   R G  + +  
Sbjct: 90  GFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNR 149
Query: 63  PNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
            +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A           
Sbjct: 150 VHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA----------- 198
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
               A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK  + +VN 
Sbjct: 199 ---DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNT 255
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 239
           +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI   +  T   
Sbjct: 256 ARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHE 315
Query: 240 MATLAALNV 248
              L   N+
Sbjct: 316 FERLTMTNI 324

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 113/249 (45%), Gaps = 18/249 (7%)
Query: 4   GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW-L 62
           G++ +D++A N+ G+A  N+ G                  R    ++   R G  + +  
Sbjct: 90  GFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNR 149
Query: 63  PNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
            +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A           
Sbjct: 150 VHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA----------- 198
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
               A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK  + +VN 
Sbjct: 199 ---DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNT 255
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 239
           +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI   +  T   
Sbjct: 256 ARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHE 315
Query: 240 MATLAALNV 248
              L   N+
Sbjct: 316 FERLTMTNI 324

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 113/249 (45%), Gaps = 18/249 (7%)
Query: 4   GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW-L 62
           G++ +D++A N+ G+A  N+ G                  R    ++   R G  + +  
Sbjct: 90  GFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNR 149
Query: 63  PNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
            +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A           
Sbjct: 150 VHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA----------- 198
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
               A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK  + +VN 
Sbjct: 199 ---DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNT 255
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 239
           +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI   +  T   
Sbjct: 256 ARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGGVAIETFHE 315
Query: 240 MATLAALNV 248
              L   N+
Sbjct: 316 FERLTMTNI 324

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 122/267 (45%), Gaps = 37/267 (13%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GW 61
           VG +N+D+  A + G  + N P                   R+    DE  +   +D  W
Sbjct: 79  VGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDE--KVARHDLRW 136
Query: 62  LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
            P   +G  ++ Q VGV+G G IG  + ++M EGF   +I YD+++   LEK     G +
Sbjct: 137 APT--IGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK----KGYY 189
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
           +              S+D++ ++ADVISLH        H+IN E +A MK++ ++VN SR
Sbjct: 190 V-------------DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR 236
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDE-----------PYMKPGLSEM---KNAIVVP 227
           GP++D  A++  L    +F   +DV+E E            +    L+++    N +V P
Sbjct: 237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTP 296
Query: 228 HIASASKWTREGMATLAALNVLGKIKG 254
           H A  +      M   A  N L  ++G
Sbjct: 297 HTAFYTTHAVRNMVVKAFDNNLELVEG 323

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 23/209 (11%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GW 61
           VG +N+D+  A + G  + N P                   R+    DE  +   +D  W
Sbjct: 79  VGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDE--KVARHDLRW 136
Query: 62  LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
            P   +G  ++ Q VGV+G G IG  + ++M EGF   +I YD+++   LEK     G +
Sbjct: 137 APT--IGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK----KGYY 189
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
           +              S+D++ ++ADVISLH        H+IN E +A MK++ ++VN SR
Sbjct: 190 V-------------DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR 236
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDE 210
           GP++D  A++  L    +F   +DV+E E
Sbjct: 237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGE 265

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 113/252 (44%), Gaps = 21/252 (8%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
           VG + VD+  A +  I V  TPGV                 RR+ + D  +R G +    
Sbjct: 102 VGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREGRWAAG- 160
Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
             L +G+  KG+ +GV+G G+IG A A    E F  ++ Y++    +             
Sbjct: 161 EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGXSVRYWNRSTLS------------- 206
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                  V W    S  ++ R++DV+++       T ++++   L  +  E I+VN +RG
Sbjct: 207 ------GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG 260
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 242
            V+DE AL+E LK   +   GLDVF +EP ++       N ++ PH  SA+  TR     
Sbjct: 261 NVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGK 320
Query: 243 LAALNVLGKIKG 254
           L   N+     G
Sbjct: 321 LVLANLAAHFAG 332

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 118/276 (42%), Gaps = 38/276 (13%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
           VG+N ++ +   KY + V N P                   R+I E    M       W 
Sbjct: 79  VGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWP 138
Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
            NL + N +   TVG+IG G IGSA A +        +I YD+      E F+T Y  F 
Sbjct: 139 SNL-ISNEIYNLTVGLIGVGHIGSAVAEIF-SAMGAKVIAYDVAYNPEFEPFLT-YTDF- 194
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                           D VL+EAD++SLH  L  +T ++I +++L  MKK A L+NC+RG
Sbjct: 195 ----------------DTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARG 238
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDE--------------PYMKPGLSEMKNAIVVPH 228
            ++D  AL++ L+   +   GLD    E              P     L++M N ++ PH
Sbjct: 239 ELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPH 298
Query: 229 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 264
            A  ++ +   M  +   + L   KG    G P  +
Sbjct: 299 SAFYTETSIRNMVQICLTDQLTIAKG----GRPRSI 330

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 112/245 (45%), Gaps = 36/245 (14%)
Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW 61
           +VG++++D++   K GI V + P                   +R+   ++  R    +  
Sbjct: 72  SVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIED--RVKKLNFS 129
Query: 62  LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
             +  +   L   T+GVIG GRIGS  A   +  F   ++ YD+ +   L++    Y   
Sbjct: 130 QDSEILARELNRLTLGVIGTGRIGSRVAXYGL-AFGXKVLCYDVVKREDLKEKGCVY--- 185
Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
                         +S+DE+L+E+DVISLH    K T+H IN+ER++  K    L+N +R
Sbjct: 186 --------------TSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTAR 231
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--------KPGLSEMK--------NAIV 225
           G V+D  AL    ++     +GLDVFEDE  +        K     +K        N I+
Sbjct: 232 GKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVII 291
Query: 226 VPHIA 230
            PHIA
Sbjct: 292 TPHIA 296

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 37/243 (15%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
           VG +N+D+ A  +YGI + N P                   R + +    ++AG Y+   
Sbjct: 77  VGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEK-- 134
Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
              F+G  L  QTVGV+G G IG   A  + +GF   +I YD Y                
Sbjct: 135 AGTFIGKELGQQTVGVMGTGHIGQV-AIKLFKGFGAKVIAYDPY---------------- 177
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSR 181
              G+ P       S++++ +++DVI LH P +++ T H+IN+     MK  AI++N +R
Sbjct: 178 PMKGDHPDF--DYVSLEDLFKQSDVIDLHVPGIEQNT-HIINEAAFNLMKPGAIVINTAR 234
Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDE-----------PYMKPGLSE---MKNAIVVP 227
             +ID  A++ +LK   +  VG+D +E E            +  P   E   M N ++ P
Sbjct: 235 PNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSP 294
Query: 228 HIA 230
           HIA
Sbjct: 295 HIA 297

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 33/266 (12%)
Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
            A+G N VD++AA K GI V N P                   R + EA+     G+++ 
Sbjct: 82  FAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNK 141
Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
                F     +G+ +G+IG G IG+    ++ E   M + +YD+     L         
Sbjct: 142 LAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL--------- 188
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
               N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L+N S
Sbjct: 189 ---GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINAS 239
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIASASK 234
           RG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI  +++
Sbjct: 240 RGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIGGSTQ 298
Query: 235 WTREGMATLAALNVLGKIKGYPIWGN 260
             +E +     L V GK+  Y   G+
Sbjct: 299 EAQENI----GLEVAGKLIKYSDNGS 320

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 33/266 (12%)
Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
            A+G N VD++AA K GI V N P                   R + EA+     G+++ 
Sbjct: 82  FAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNK 141
Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
                F     +G+ +G+IG G IG+    ++ E   M + +YD+     L         
Sbjct: 142 LAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL--------- 188
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
               N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L+N S
Sbjct: 189 ---GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINAS 239
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIASASK 234
           RG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI  +++
Sbjct: 240 RGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIGGSTQ 298
Query: 235 WTREGMATLAALNVLGKIKGYPIWGN 260
             +E +     L V GK+  Y   G+
Sbjct: 299 EAQENI----GLEVAGKLIKYSDNGS 320

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 35/227 (15%)
Query: 63  PNLFVGNLLKGQTVGVIGAGRIG---SAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 119
           PN  +G +LKGQT+G+ G G+IG   + Y R     F MN++ +    +           
Sbjct: 150 PNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR----AFGMNVLVWGRENSK---------- 195
Query: 120 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
           +  +A+G     +  A S D +  ++DV+S+H  L+  T  +I    L  MK  A+ VN 
Sbjct: 196 ERARADG-----FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNT 250
Query: 180 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTRE 238
           SR  +++E  +V  L +       +DVFE EP ++   L  M+N I  PHI    + + E
Sbjct: 251 SRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYE 310
Query: 239 GMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSK 285
               +A  N+L  ++     GN + V       A P A +P+++ ++
Sbjct: 311 MYFGIAFQNILDILQ-----GNVDSV-------ANPTALAPALIRAE 345

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 117/266 (43%), Gaps = 33/266 (12%)
Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
             +G N VD++AA K GI V N P                   R + EA+     G+++ 
Sbjct: 81  FCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNK 140
Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
                F     +G+ +G+IG G IG+    ++ E   M + +YD+     L         
Sbjct: 141 LAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL--------- 187
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
               N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L+N S
Sbjct: 188 ---GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINAS 238
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIASASK 234
           RG V+D  AL + L    +    +DVF  E      P+  P L E  N ++ PHI  +++
Sbjct: 239 RGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP-LCEFDNVLLTPHIGGSTQ 297
Query: 235 WTREGMATLAALNVLGKIKGYPIWGN 260
             +E +     L V GK+  Y   G+
Sbjct: 298 EAQENI----GLEVAGKLIKYSDNGS 319

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 116/254 (45%), Gaps = 25/254 (9%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
           +G +N+D   A K  I V   PG                  R++  +    ++G++    
Sbjct: 77  IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK-- 134
Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
                G  L G+T+G++G GRIG+    ++     M ++ YD+       + + A     
Sbjct: 135 ---IEGLELAGKTIGIVGFGRIGTKVG-IIANAMGMKVLAYDILDIREKAEKINA----- 185
Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                      +A S++E+L+ +DVISLH  + K    +I+  +   MK   I+VN SR 
Sbjct: 186 -----------KAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA 234
Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP---GLSEMKNAIVVPHIASASKWTREG 239
             ++  AL++++K+  ++    DVF +EP  +     L + +  IV  HI + +K  ++ 
Sbjct: 235 VAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR 294
Query: 240 MATLAALNVLGKIK 253
           +A +   N+L  +K
Sbjct: 295 VAEMTTQNLLNAMK 308

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 33/266 (12%)
Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
             +G N VD++AA K GI V N P                   R + EA+     G+++ 
Sbjct: 82  FCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNK 141
Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
                F     +G+ +G+IG G IG+    ++ E     + +YD+     L         
Sbjct: 142 LAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL--------- 188
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
               N  Q         + ++L  +DV+SLH   + +T +    + ++  K  ++L+N S
Sbjct: 189 ---GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINAS 239
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIASASK 234
           RG V+D  AL + L    +    +DVF  E      P+  P L E  N ++ PHI  +++
Sbjct: 240 RGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP-LCEFDNVLLTPHIGGSTQ 298
Query: 235 WTREGMATLAALNVLGKIKGYPIWGN 260
             +E +     L V GK+  Y   G+
Sbjct: 299 EAQENI----GLEVAGKLIKYSDNGS 320

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 114/266 (42%), Gaps = 33/266 (12%)
Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG 60
            A+G N VD++AA K GI V N P                   R + EA+     G+ + 
Sbjct: 76  FAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNK 135
Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
                F     +G+ +G+IG G IG+    ++ E     + +YD+     L         
Sbjct: 136 LAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL--------- 182
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
               N  Q         + ++L  +DV+SLH   + +T +    + ++  K  ++L+N S
Sbjct: 183 ---GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINAS 233
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIASASK 234
           RG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI  +++
Sbjct: 234 RGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIGGSTQ 292
Query: 235 WTREGMATLAALNVLGKIKGYPIWGN 260
             +E +     L V GK+  Y   G+
Sbjct: 293 EAQENI----GLEVAGKLIKYSDNGS 314

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 68  GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 127
           G  L+ +T+G++G G +GS   +  +E   +  +  D  +A R ++     G F      
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRL-QTRLEALGIRTLLCDPPRAARGDE-----GDF------ 161
Query: 128 QPVTWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGP 183
                    ++DE+++EADV++ H  L K     T HL ++  +  +K  AIL+N  RGP
Sbjct: 162 --------RTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP 213
Query: 184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 241
           V+D  AL+  L       V LDV+E EP +   L E  + I   HIA    +T EG A
Sbjct: 214 VVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIAG---YTLEGKA 267

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 137 SMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 192
           S++ +L EADVISLH  L++     T HL+++ RLA ++    LVN SRG V+D  AL  
Sbjct: 160 SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRR 219
Query: 193 HLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 233
            L+      V LDV+E EP   P L+  +  I  PHIA  S
Sbjct: 220 LLEGGADLEVALDVWEGEPQADPELA-ARCLIATPHIAGYS 259

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 34/193 (17%)
Query: 71  LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 130
           ++  TVGV+G GRIG   A++   G    +I  D+++   +E + T              
Sbjct: 144 VRNCTVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCTQV------------ 190
Query: 131 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 190
                 S+DEVL ++D+I++H    K    ++ ++ L  MK  AILVNC+RG ++D  A+
Sbjct: 191 ------SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAV 244
Query: 191 VEHLKQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIASASKW 235
           +E ++   +   G DV + E               P  +  +      ++ PH+ S +  
Sbjct: 245 IEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDE 304
Query: 236 TREGMATLAALNV 248
             + M  ++  N+
Sbjct: 305 AVKNMVEVSYQNL 317

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 71  LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 129
           L+G+T+G +GAGRIG    + + + F  NL+Y+D  Q A  LEK   A            
Sbjct: 168 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 214
Query: 130 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 189
              K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG +++  A
Sbjct: 215 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 271
Query: 190 LVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 233
           +V+ ++   +     DV++ +P  K      M N  + PH +  +
Sbjct: 272 VVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 71  LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 129
           L+G+T+G +GAGRIG    + + + F  NL+Y+D  Q A  LEK   A            
Sbjct: 162 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 208
Query: 130 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 189
              K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG +++  A
Sbjct: 209 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 265
Query: 190 LVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 233
           +V+ ++   +     DV++ +P  K      M N  + PH +  +
Sbjct: 266 VVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 71  LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 130
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 207
Query: 131 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 190
             +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN +RG +     +
Sbjct: 208 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 267
Query: 191 VEHLKQNPMFRVGLDVFEDEP 211
              L+   +   G DV+  +P
Sbjct: 268 AAALESGQLRGYGGDVWFPQP 288

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 71  LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 130
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 163 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 208
Query: 131 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 190
             +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN +RG +     +
Sbjct: 209 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 268
Query: 191 VEHLKQNPMFRVGLDVFEDEP 211
              L+   +   G DV+  +P
Sbjct: 269 AAALESGQLRGYGGDVWFPQP 289

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 109/265 (41%), Gaps = 35/265 (13%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
           +G ++VD+ AA    I V                       R  + + ++ R G   GW 
Sbjct: 122 IGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GWN 178
Query: 63  PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
               V     ++G  VG + AGRIG    R++   F M+L Y D +   RL + V     
Sbjct: 179 IADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK--- 231
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A LVN +
Sbjct: 232 ------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTA 283
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHIA--SA 232
           RG + D  A+V  L+   +     DV+       D P+       M +  + PHI+  S 
Sbjct: 284 RGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT-----MPHNGMTPHISGTSL 338
Query: 233 SKWTREGMATLAALNVLGKIKGYPI 257
           S  TR    T   L      +G PI
Sbjct: 339 SAQTRYAAGTREILECY--FEGRPI 361

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 109/265 (41%), Gaps = 35/265 (13%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
           +G ++VD+ AA    I V                       R  + + ++ R G   GW 
Sbjct: 123 IGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GWN 179
Query: 63  PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
               V     ++G  VG + AGRIG    R++   F M+L Y D +   RL + V     
Sbjct: 180 IADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK--- 232
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A LVN +
Sbjct: 233 ------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTA 284
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHIA--SA 232
           RG + D  A+V  L+   +     DV+       D P+       M +  + PHI+  S 
Sbjct: 285 RGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT-----MPHNGMTPHISGTSL 339
Query: 233 SKWTREGMATLAALNVLGKIKGYPI 257
           S  TR    T   L      +G PI
Sbjct: 340 SAQTRYAAGTREILECY--FEGRPI 362

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 33/168 (19%)
Query: 44  RRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 101
           +RI++  E  + G Y  D  +P      L++G+ V V+G G IG                
Sbjct: 99  KRIIQYGEKXKRGDYGRDVEIP------LIQGEKVAVLGLGEIG---------------- 136
Query: 102 YYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISLHPVLDKTTY 159
                  TR+ K + A G  ++     P    W+  +S++E LREA        L+K T 
Sbjct: 137 -------TRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTR 189
Query: 160 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 207
            L+  + LA   ++A+ VN  R  V+D   ++  LK+ P F    DV+
Sbjct: 190 GLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 122 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 178
Query: 63  PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 179 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 229
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 230 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 233
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 337

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 63  PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 233
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 338

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 3   VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 62
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 63  PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 233
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 338

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY- 212
           L  TT+HL + E     K++ +L+N  RGP +D  AL+  L  + +    LDV E EP  
Sbjct: 201 LTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLP 260
Query: 213 MKPGLSEMKNAIVVPHIA 230
               L +  + ++ PHI+
Sbjct: 261 TDHPLWQRDDVLITPHIS 278

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 26/193 (13%)
Query: 71  LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 130
           LKG+T+ ++G G IG   A    + F M ++       +R  +    + Q  +       
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTG-KHFGMKVL-----GVSRSGRERAGFDQVYQL------ 185
Query: 131 TWKRASSMDEVLREADVI-SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 189
                 +++++L +ADVI S+ P   + T+HL    R    K  AIL N  RG  I+E  
Sbjct: 186 -----PALNKMLAQADVIVSVLPA-TRETHHLFTASRFEHCKPGAILFNVGRGNAINEGD 239
Query: 190 LVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM---KNAIVVPHIASASKWTREGMATLAAL 246
           L+  L+   +    LDVFE EP   P  S +    N I+ PH ++ S    + +A +   
Sbjct: 240 LLTALRTGKLGMAVLDVFEQEPL--PADSPLWGQPNLIITPHNSAYS--FPDDVAQIFVR 295
Query: 247 NVLGKIKGYPIWG 259
           N +  I G P+ G
Sbjct: 296 NYIRFIDGQPLDG 308

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 119 GQFLKANGEQPVTWKRAS----------SMDEVLREADVISLHPVLDKTTYHLINKERLA 168
               KA G + + + R+S          S  ++ R++D + +   L   T   +N   LA
Sbjct: 138 AHLAKAFGXRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLA 197
Query: 169 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 228
             +K   +VN +R  V+ +   +  LK+        DV+ +EP +    + ++NAI+ PH
Sbjct: 198 NARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITE--TNLRNAILSPH 255
Query: 229 IA 230
           +A
Sbjct: 256 VA 257

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	1e-101
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	2e-99
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	5e-98
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	5e-98
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	8e-96
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	4e-95
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	3e-92
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	1e-87
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	2e-87
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	4e-86
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	3e-84
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	1e-83
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	3e-81
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	2e-80
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	2e-80
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	2e-77
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	2e-77
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	7e-76
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	2e-74
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	3e-74
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	5e-72
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	2e-70
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	2e-70
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	8e-69
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	1e-66
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	5e-64
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	2e-63
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	5e-61
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	1e-60
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	2e-58
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	1e-31
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	3e-29
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  299 bits (767), Expect = e-101
 Identities = 77/264 (29%), Positives = 128/264 (48%), Gaps = 18/264 (6%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
            ++G++++D++A    GI VGN P  +T  TAE+A  L L +ARR  E ++ +R   + G
Sbjct: 74  YSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPG 133

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           W P   VG  L  +T+G+ G G IG A A+   +GF M++ Y+D ++             
Sbjct: 134 WEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDYFDTHR------------- 179

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
              ++ E         S+D +L  +   SL+      T +  NK  + ++ + AI+VN +
Sbjct: 180 -ASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTA 238

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RG ++D   +V  L+   +   G DVF  EP +  G  ++ N  + PHI SA+   RE M
Sbjct: 239 RGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDM 298

Query: 241 ATLAALNVLGKIKGYPIWGNPNQV 264
           A  A   +     G  +      +
Sbjct: 299 AHQANDLIDALFGGADM---SYAL 319

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  294 bits (754), Expect = 2e-99
 Identities = 113/278 (40%), Positives = 161/278 (57%), Gaps = 24/278 (8%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG---- 56
            AVGY+N+D+  A K GI V NTP VLT+ TA+LA +L LA AR +V+ D F+R+G    
Sbjct: 74  YAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKK 133

Query: 57  LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 116
               W P  F+G  + G+T+G+IG GRIG A A+   +GF M ++YY   +   +E+ + 
Sbjct: 134 RGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRA-KGFNMRILYYSRTRKEEVERELN 192

Query: 117 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 176
           A                    ++++LRE+D + L   L + TYHLIN+ERL  MKK AIL
Sbjct: 193 A----------------EFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL 236

Query: 177 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 236
           +N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L ++ N ++ PHI SAS   
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGA 296

Query: 237 REGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 274
           REGMA L A N++   +G      P  V   + +  +P
Sbjct: 297 REGMAELVAKNLIAFKRGEIP---PTLVNREVIKIRKP 331

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  291 bits (746), Expect = 5e-98
 Identities = 79/264 (29%), Positives = 133/264 (50%), Gaps = 20/264 (7%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           ++VGY+++D+ AA   GI V +TP VL++  AE+A  L L A RR  EAD  +R+G + G
Sbjct: 101 LSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPG 160

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           W P   +G  L G+ +G+ G GRIG A A     GF + + Y++  + +   +    Y  
Sbjct: 161 WGPTQLLGMGLTGRRLGIFGMGRIGRAIATRA-RGFGLAIHYHNRTRLSHALEEGAIY-- 217

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                           ++D +L  +D+  +           ++ +R+A + + A+++N S
Sbjct: 218 --------------HDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINIS 263

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RG +I++ AL+E L+   +F  GLDVF +EP + P    + N  + PHI SA+  TR+ M
Sbjct: 264 RGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAM 323

Query: 241 ATLAALNVLGKIKGYPIWGNPNQV 264
             L    +    +        N +
Sbjct: 324 GWLLIQGIEALNQSDVP---DNLI 344

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  290 bits (744), Expect = 5e-98
 Identities = 90/265 (33%), Positives = 132/265 (49%), Gaps = 20/265 (7%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           M+VG +++ ++   K GI VG TP VLT+TTAELA SL L   RR+ EA E ++ G +  
Sbjct: 83  MSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTS 142

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           W P    G  L   TVG+IG GRIG A AR +   F +    Y         +    +  
Sbjct: 143 WKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLK-PFGVQRFLYT--GRQPRPEEAAEFQ- 198

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                           S  E+  ++D I +   L   T  L NK+    MK+ A+ +N S
Sbjct: 199 ------------AEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINIS 246

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNAIVVPHIASASKWTREG 239
           RG V+++  L + L    +   GLDV   EP      L  +KN +++PHI SA+  TR  
Sbjct: 247 RGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNT 306

Query: 240 MATLAALNVLGKIKGYPIWGNPNQV 264
           M+ LAA N+L  ++G P+   P+++
Sbjct: 307 MSLLAANNLLAGLRGEPM---PSEL 328

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  284 bits (728), Expect = 8e-96
 Identities = 109/265 (41%), Positives = 154/265 (58%), Gaps = 27/265 (10%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
            +VG ++VD+ AA + GI V +TPGVLTE TA+L  +L LA ARR+VE   + R GL+  
Sbjct: 72  YSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKA 131

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           W P L +G  L+G T+G++G GRIG A A+     F M ++Y+      R  K       
Sbjct: 132 WHPELLLGLDLQGLTLGLVGMGRIGQAVAKRA-LAFGMRVVYHA-----RTPK------- 178

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                   P  +    S++E+L+EADV+SLH  L   T+ L+N+ERL  MK+ AIL+N +
Sbjct: 179 ------PLPYPFL---SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTA 229

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG 239
           RG ++D  ALVE L+   +F  GLDV + EP      L  + NA++ PHI SA + TRE 
Sbjct: 230 RGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRER 288

Query: 240 MATLAALNVLGKIKGYPIWGNPNQV 264
           MA +A  N+L  ++G      PN V
Sbjct: 289 MAEVAVENLLAVLEGREP---PNPV 310

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  283 bits (726), Expect = 4e-95
 Identities = 73/258 (28%), Positives = 118/258 (45%), Gaps = 18/258 (6%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
              G++ +D++A N+ G+A  N+ G     T++LA  L L+  R    ++   R G  + 
Sbjct: 87  AGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPET 146

Query: 61  WLPNLF----VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 116
           +           +  +G  +G +G G I    AR  V G  M L+YYD+           
Sbjct: 147 FNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP--------- 197

Query: 117 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 176
                  A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK  + +
Sbjct: 198 -----ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRI 252

Query: 177 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 236
           VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI   +  T
Sbjct: 253 VNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIET 312

Query: 237 REGMATLAALNVLGKIKG 254
                 L   N+   +  
Sbjct: 313 FHEFERLTMTNIDRFLLQ 330

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  275 bits (706), Expect = 3e-92
 Identities = 86/272 (31%), Positives = 127/272 (46%), Gaps = 28/272 (10%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
              G++N DV+A    G+ +   P +LT  TAELA  L++   R +  AD F+R+G + G
Sbjct: 74  ALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRG 133

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
           W P  F G  L   TVG +G G IG A A  +  G+   L Y++                
Sbjct: 134 WQP-RFYGTGLDNATVGFLGMGAIGLAMADRLQ-GWGATLQYHEAKA------------- 178

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
            L    EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  
Sbjct: 179 -LDTQTEQRLGLRQVA-CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 236

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASA 232
           RG V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA
Sbjct: 237 RGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSA 296

Query: 233 SKWTREGMATLAALNVLGKIKGYPIWGNPNQV 264
            +  R  +   AA N+L  + G       N V
Sbjct: 297 VRAVRLEIERCAAQNILQALAGERP---INAV 325

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  264 bits (676), Expect = 1e-87
 Identities = 82/264 (31%), Positives = 127/264 (48%), Gaps = 24/264 (9%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
             VG + VD+  A +  I V  TPGVL +  A+L  +L LA  RR+ + D  +R G +  
Sbjct: 100 NGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAA 159

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
               L +G+  KG+ +GV+G G+IG A A    E F M++ Y++     R          
Sbjct: 160 G-EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGMSVRYWN-----RSTL------- 205

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                    V W    S  ++ R++DV+++       T ++++   L  +  E I+VN +
Sbjct: 206 -------SGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVA 258

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RG V+DE AL+E LK   +   GLDVF +EP ++       N +++PH  SA+  TR  M
Sbjct: 259 RGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAM 318

Query: 241 ATLAALNVLGKIKGYPIWGNPNQV 264
             L   N+     G      PN V
Sbjct: 319 GKLVLANLAAHFAGEKA---PNTV 339

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  263 bits (675), Expect = 2e-87
 Identities = 80/268 (29%), Positives = 129/268 (48%), Gaps = 25/268 (9%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
            + GY+N+D+  A K GI V    G+L+E  AE    L +   R+I  AD+F+R G ++ 
Sbjct: 71  HSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWES 130

Query: 61  WLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 117
                        L G+ VG++G G IG A AR +   F + L Y+  ++   +EK + A
Sbjct: 131 HAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRL-IPFGVKLYYWSRHRKVNVEKELKA 189

Query: 118 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 177
                           R   +DE+L ++D++ L   L + TYH+IN+ER+  ++    LV
Sbjct: 190 ----------------RYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEG-KYLV 232

Query: 178 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL-SEMKNAIVVPHIASASKWT 236
           N  RG ++DE A+ E +KQ  +     DVFE EP  +  L       ++ PH A  +   
Sbjct: 233 NIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEA 292

Query: 237 REGMATLAALNVLGKIKGYPIWGNPNQV 264
           +E +   A  N+L  ++G       + V
Sbjct: 293 QEDVGFRAVENLLKVLRGEVP---EDLV 317

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  260 bits (666), Expect = 4e-86
 Identities = 82/264 (31%), Positives = 128/264 (48%), Gaps = 25/264 (9%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
            +VG + VD+    + G+ V NTP VLT+  A+LA  L LA  RRI E D+++R G +  
Sbjct: 94  FSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKF 153

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
              +  +     G+ VG+IG GRIG A A    E F   + Y+      R +K       
Sbjct: 154 G--DFKLTTKFSGKRVGIIGLGRIGLAVAER-AEAFDCPISYFS-----RSKK------- 198

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                      +    S+ E+   +D++ +   L   T H+IN+E +  +  + +L+N  
Sbjct: 199 -------PNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIG 251

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 240
           RGP +DE  LV  L +  +   GLDVFE EP +   L  ++N +++PH+ S +  TR+ M
Sbjct: 252 RGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVM 311

Query: 241 ATLAALNVLGKIKGYPIWGNPNQV 264
           A L   N+     G P+      V
Sbjct: 312 ADLVVGNLEAHFSGKPL---LTPV 332

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  254 bits (651), Expect = 3e-84
 Identities = 58/270 (21%), Positives = 102/270 (37%), Gaps = 33/270 (12%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           +  G +++   +     + V    G   +  AE A +L LA  +RI++  E M+ G Y  
Sbjct: 57  VTAGLDHLPWESIPP-HVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGR 115

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
            +       L++G+ V V+G G IG+   +++       +  +                 
Sbjct: 116 DVE----IPLIQGEKVAVLGLGEIGTRVGKIL-AALGAQVRGFSRTPK------------ 158

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                      W+  +S++E LREA        L+K T  L+  + LA M ++A+ VN  
Sbjct: 159 --------EGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVG 210

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTR- 237
           R  V+D   ++  LK+ P F    DV+              + N +  P +A      R 
Sbjct: 211 RAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERV 270

Query: 238 -EGMATLAALNVLGKIKGYPIWGNPNQVEP 266
              M   A  N++    G       N  + 
Sbjct: 271 WRQMVMEAVRNLITYATGGRP---RNIAKR 297

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  254 bits (651), Expect = 1e-83
 Identities = 79/270 (29%), Positives = 125/270 (46%), Gaps = 22/270 (8%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL--- 57
           +  G++N+D+ +A   GIAV N P    E TA+      L   RR     + +R G    
Sbjct: 92  IGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQ 151

Query: 58  -YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 116
             +           ++G+T+G+IG GR+G A A    + F  N+++YD Y          
Sbjct: 152 SVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KAFGFNVLFYDPY---------- 200

Query: 117 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 176
                L    E+ +  +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A L
Sbjct: 201 -----LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFL 255

Query: 177 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASK 234
           VN +RG ++DE AL + LK+  +    LDV E EP+      L +  N I  PH A  S+
Sbjct: 256 VNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSE 315

Query: 235 WTREGMATLAALNVLGKIKGYPIWGNPNQV 264
                M   AA  +   I G       N V
Sbjct: 316 QASIEMREEAAREIRRAITGRIPDSLKNCV 345

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  249 bits (638), Expect = 3e-81
 Identities = 59/265 (22%), Positives = 111/265 (41%), Gaps = 20/265 (7%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
             +G ++VD+ +A    + V       + + AE    + L+  R  + + E+ R G ++ 
Sbjct: 120 AGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWN- 178

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
               +     L+   VG + AGRIG A  R +   F ++L Y D ++             
Sbjct: 179 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLA-PFDVHLHYTDRHR------------- 224

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
            L  + E+ +     ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 225 -LPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG 239
           RG + D  A+   L+   +     DV+  +P  K      M    + PHI+  +   +  
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQAR 343

Query: 240 MATLAALNVLGKIKGYPIWGNPNQV 264
            A      +    +G PI    ++ 
Sbjct: 344 YAAGTREILECFFEGRPI---RDEY 365

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  244 bits (626), Expect = 2e-80
 Identities = 96/253 (37%), Positives = 141/253 (55%), Gaps = 21/253 (8%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           VG +N+DV AA + GI V N P   + + AELA  L  + AR+I  AD  MR G    W 
Sbjct: 75  VGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREG---VWA 131

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
               +G  L+G+T+G+IG GRIG   A++      MN++ YD Y     E+         
Sbjct: 132 KKEAMGIELEGKTIGIIGFGRIGYQVAKIA-NALGMNILLYDPYPN---EERAKEVN--- 184

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                    +     ++ +L+E+DV+++H  L ++TYHLIN+ERL  MKK AIL+N SRG
Sbjct: 185 -------GKFV---DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRG 234

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGMA 241
           PV+D  ALV+ LK+  +   GLDVFE+EP  K   L++  N ++ PHI +++   +E   
Sbjct: 235 PVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAG 294

Query: 242 TLAALNVLGKIKG 254
              A  V+  +KG
Sbjct: 295 VEVAEKVVKILKG 307

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  236 bits (605), Expect = 2e-77
 Identities = 61/257 (23%), Positives = 111/257 (43%), Gaps = 29/257 (11%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           ++ G +++DVN   +  +   N     + + AE A +L LA A+ I+E +E M+AG++  
Sbjct: 56  ISAGVDHIDVNGIPENVVLCSNAGA-YSISVAEHAFALLLAHAKNILENNELMKAGIFRQ 114

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
                    LL G+ +G++G G IG   A +  + F M +I Y                 
Sbjct: 115 SP-----TTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVD----------- 157

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
             +             S  ++ R++D + +   L   T  ++N   LA  +K   +VN +
Sbjct: 158 --QNVDVISE------SPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVA 209

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHI-ASASKWTREG 239
           R  V+ +  ++  LK+        DV+ +EP  +   + ++NAI+ PH+    S    + 
Sbjct: 210 RADVVSKPDMIGFLKERSDVWYLSDVWWNEP--EITETNLRNAILSPHVAGGMSGEIMDI 267

Query: 240 MATLAALNVLGKIKGYP 256
              LA  NV    +G  
Sbjct: 268 AIQLAFENVRNFFEGEG 284

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  237 bits (608), Expect = 2e-77
 Identities = 75/277 (27%), Positives = 118/277 (42%), Gaps = 38/277 (13%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           VG +N+D+  A + G  + N P       AE AA  +    R+    DE +         
Sbjct: 79  VGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARH---DLR 135

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
               +G  ++ Q VGV+G G IG  + ++M EGF   +I YD+++   LEK         
Sbjct: 136 WAPTIGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEKKGYYV---- 190

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                         S+D++ ++ADVISLH        H+IN E +A MK++ ++VN SRG
Sbjct: 191 -------------DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRG 237

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--------------LSEMKNAIVVPH 228
           P++D  A++  L    +F   +DV+E E  +                 L    N +V P 
Sbjct: 238 PLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPK 297

Query: 229 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVE 265
            A  +      M   A  N L  ++G         V+
Sbjct: 298 TAFYTTHAVRNMVVKAFDNNLELVEGKE---AETPVK 331

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  234 bits (599), Expect = 7e-76
 Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 19/258 (7%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 61
            +G +++D+ AA   G+ V    G    + AE      L   R  V     +  G ++  
Sbjct: 94  GIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN-V 152

Query: 62  LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
               +    L+G+T+G +GAGRIG    + +   F  NL+Y+D  Q              
Sbjct: 153 AGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLK-PFGCNLLYHDRLQ-------------- 197

Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
           +    E+    K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +R
Sbjct: 198 MAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNAR 257

Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASASKWTREG 239
           G +++  A+V+ ++   +     DV++ +P  K  P    M N  + PH +  +   +  
Sbjct: 258 GAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHP-WRYMPNQAMTPHTSGTTIDAQLR 316

Query: 240 MATLAALNVLGKIKGYPI 257
            A      +    KG   
Sbjct: 317 YAAGTKDMLERYFKGEDF 334

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  231 bits (591), Expect = 2e-74
 Identities = 73/265 (27%), Positives = 115/265 (43%), Gaps = 27/265 (10%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG----- 56
                ++D+ A    G+ V    G      AEL  +L +AA RRI +    ++ G     
Sbjct: 83  RDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQS 141

Query: 57  --LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 114
                   PN  +G +LKGQT+G+ G G+IG   A      F MN++             
Sbjct: 142 GLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGMNVL------------- 187

Query: 115 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 174
              +G+       +   +  A S D +  ++DV+S+H  L+  T  +I    L  MK  A
Sbjct: 188 --VWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTA 245

Query: 175 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASA 232
           + VN SR  +++E  +V  L +       +DVFE EP +  G  L  M+N I  PHI   
Sbjct: 246 LFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEP-ILQGHTLLRMENCICTPHIGYV 304

Query: 233 SKWTREGMATLAALNVLGKIKGYPI 257
            + + E    +A  N+L  ++G   
Sbjct: 305 ERESYEMYFGIAFQNILDILQGNVD 329

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  229 bits (587), Expect = 3e-74
 Identities = 60/278 (21%), Positives = 114/278 (41%), Gaps = 39/278 (14%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
            G +++D   A + G  +   P       AELA + ++   R             +   +
Sbjct: 78  AGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK--V 135

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
                   ++  TVGV+G GRIG   A++   G    +I  D+++   +E + T      
Sbjct: 136 DAFMFSKEVRNCTVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCT-Q---- 189

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                         S+DEVL ++D+I++H    K    ++ ++ L  MK  AILVNC+RG
Sbjct: 190 -------------VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARG 236

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVP 227
            ++D  A++E ++   +   G DV + E               P  +  +      ++ P
Sbjct: 237 QLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITP 296

Query: 228 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVE 265
           H+ S +    + M  ++  N+    +       PN+++
Sbjct: 297 HLGSYTDEAVKNMVEVSYQNLKDLAETGDC---PNKIK 331

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  224 bits (572), Expect = 5e-72
 Identities = 71/276 (25%), Positives = 119/276 (43%), Gaps = 38/276 (13%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           VG +N+D+ A  +YGI + N P       AE A + +L   R + +    ++AG Y+   
Sbjct: 77  VGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE--K 134

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
              F+G  L  QTVGV+G G IG    ++  +GF   +I YD Y           Y    
Sbjct: 135 AGTFIGKELGQQTVGVMGTGHIGQVAIKLF-KGFGAKVIAYDPYPMKGDHPDFD-Y---- 188

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                         S++++ +++DVI LH    +   H+IN+     MK  AI++N +R 
Sbjct: 189 -------------VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARP 235

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--------------LSEMKNAIVVPH 228
            +ID  A++ +LK   +  VG+D +E E                    L  M N ++ PH
Sbjct: 236 NLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPH 295

Query: 229 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 264
           IA  ++     M   +  +++  +          +V
Sbjct: 296 IAYYTETAVHNMVYFSLQHLVDFLTKGET---STEV 328

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  220 bits (562), Expect = 2e-70
 Identities = 78/255 (30%), Positives = 123/255 (48%), Gaps = 20/255 (7%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
            G +NVD+ AA + GI V NTP   + + AEL   + +  AR+I +A   M+ G    W 
Sbjct: 98  TGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDG---KWE 154

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
              F+G  L G+T+G++G GRIG   A  M + F M  I YD   +    +   ++G   
Sbjct: 155 RKKFMGTELNGKTLGILGLGRIGREVATRM-QSFGMKTIGYDPIIS---PEVSASFG--- 207

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                  V       ++E+    D I++H  L  +T  L+N    A  KK   +VNC+RG
Sbjct: 208 -------VQQL---PLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARG 257

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 242
            ++DE AL+  L+        LDVF +EP     L + +N I  PH+ +++K  +     
Sbjct: 258 GIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGE 317

Query: 243 LAALNVLGKIKGYPI 257
             A+  +  +KG  +
Sbjct: 318 EIAVQFVDMVKGKSL 332

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  219 bits (560), Expect = 2e-70
 Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 25/258 (9%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           +G +N+D   A K  I V   PG  T++  EL   L +AAAR++  +    ++G    + 
Sbjct: 77  IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSG---IF- 132

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
                G  L G+T+G++G GRIG+    +      M ++ YD+       +         
Sbjct: 133 -KKIEGLELAGKTIGIVGFGRIGTKVGIIA-NAMGMKVLAYDILDI---REKAEKIN--- 184

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
                         S++E+L+ +DVISLH  + K    +I+  +   MK   I+VN SR 
Sbjct: 185 -------AKA---VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA 234

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG---LSEMKNAIVVPHIASASKWTREG 239
             ++  AL++++K+  ++    DVF +EP  +     L + +  IV  HI + +K  ++ 
Sbjct: 235 VAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR 294

Query: 240 MATLAALNVLGKIKGYPI 257
           +A +   N+L  +K   +
Sbjct: 295 VAEMTTQNLLNAMKELGM 312

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  221 bits (565), Expect = 8e-69
 Identities = 86/280 (30%), Positives = 132/280 (47%), Gaps = 29/280 (10%)

Query: 2   AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 61
            VG +NVDV+AA   G+ V N P     + AE A +L LAA+R+I  AD  +R      W
Sbjct: 74  GVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREH---TW 130

Query: 62  LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 121
             + F G  + G+TVGV+G GRIG   A+ +   F   ++ YD         +V+     
Sbjct: 131 KRSSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYD--------PYVSP--AR 179

Query: 122 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 181
               G + ++       D++L  AD IS+H      T  LI+KE LA  K   I+VN +R
Sbjct: 180 AAQLGIELLSL------DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAAR 233

Query: 182 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 241
           G ++DE AL + +    +   GLDVF  EP     L E+   +V PH+ +++   ++   
Sbjct: 234 GGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAG 293

Query: 242 TLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSI 281
           T  A +V   + G  +   P+ V      N      +  +
Sbjct: 294 TDVAESVRLALAGEFV---PDAV------NVGGGVVNEEV 324

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  211 bits (539), Expect = 1e-66
 Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 29/263 (11%)

Query: 3   VGYNNVDVNAANKYG--IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           VG +++D++  N+ G  I+V    G    + AE      L   R  V A E +       
Sbjct: 93  VGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINH---D 149

Query: 61  WLPNLFV--GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 118
           W           ++G+T+  IGAGRIG      +V  F    + Y  YQA   +      
Sbjct: 150 WEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLV-PFNPKELLYYDYQALPKDA----- 203

Query: 119 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 178
                   E+ V  +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN
Sbjct: 204 --------EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVN 255

Query: 179 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKN-----AIVVPHIAS 231
            +RG +     +   L+   +   G DV+  +P  K  P   +M+N       + PH + 
Sbjct: 256 TARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHP-WRDMRNKYGAGNAMTPHYSG 314

Query: 232 ASKWTREGMATLAALNVLGKIKG 254
            +   +   A      +     G
Sbjct: 315 TTLDAQTRYAQGTVNILESFFTG 337

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  205 bits (524), Expect = 5e-64
 Identities = 68/241 (28%), Positives = 107/241 (44%), Gaps = 30/241 (12%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           +G N VD++AA K GI V N P   T + AEL     L   R + EA+     G      
Sbjct: 78  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG---VGN 134

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
                    +G+ +G+IG G IG+    +  E   M + +YD+     L           
Sbjct: 135 KLAAGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIENKLPLG---------- 183

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
             N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L+N SRG
Sbjct: 184 --NATQVQ------HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRG 235

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHIASASKWTR 237
            V+D  AL + L    +    +DVF  EP          L+E  N ++ PHI   S  T+
Sbjct: 236 TVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG-GS--TQ 292

Query: 238 E 238
           E
Sbjct: 293 E 293

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  204 bits (521), Expect = 2e-63
 Identities = 79/241 (32%), Positives = 114/241 (47%), Gaps = 30/241 (12%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           VG N V++ AA K GI V N P   T + AEL     +   RRI        AG   GW 
Sbjct: 89  VGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAG---GWE 145

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
                   ++G+T+G++G G IGS    +  E   M + YYD     +L+          
Sbjct: 146 KTAIGSREVRGKTLGIVGYGNIGSQVGNLA-ESLGMTVRYYDTS--DKLQY--------- 193

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 182
             N +       A+S+DE+L+ +DV+SLH    K+T  LI + +L  MKK A L+N +RG
Sbjct: 194 -GNVKP------AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARG 246

Query: 183 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHIASASKWTR 237
             +D  AL + L++  +    +DVF  EP          L  ++N I+ PHI   S  T 
Sbjct: 247 SDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIG-GS--TE 303

Query: 238 E 238
           E
Sbjct: 304 E 304

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  195 bits (498), Expect = 5e-61
 Identities = 55/254 (21%), Positives = 95/254 (37%), Gaps = 31/254 (12%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           ++ G + + + A    G+ V NT G+  +  +E   +  L+  R    A    R      
Sbjct: 68  ISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGA---R 124

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 120
                   + L GQ + + G G+IG + A        M++I  +       + F      
Sbjct: 125 QWALPMTTSTLTGQQLLIYGTGQIGQSLAAKA-SALGMHVIGVN-TTGHPADHFHETVA- 181

Query: 121 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 180
                          ++  + L  A+ I     L  TT+HL + E     K++ +L+N  
Sbjct: 182 --------------FTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIG 227

Query: 181 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASASK 234
           RGP +D  AL+  L  + +    LDV E EP     L          + ++ PHI+    
Sbjct: 228 RGPAVDTTALMTALDHHQLSMAALDVTEPEP-----LPTDHPLWQRDDVLITPHISGQIA 282

Query: 235 WTREGMATLAALNV 248
             R  +  + A N 
Sbjct: 283 HFRATVFPIFAANF 296

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  196 bits (500), Expect = 1e-60
 Identities = 73/292 (25%), Positives = 110/292 (37%), Gaps = 53/292 (18%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
           +G +++D++   + GIA  + PG       +      LA A                   
Sbjct: 67  IGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE------------------ 108

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
                G  L  +T GV+GAG++G     ++  G    ++  D  +  R            
Sbjct: 109 ---VRGADLAERTYGVVGAGQVGGRLVEVL-RGLGWKVLVCDPPRQAR------------ 152

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 178
                + V      S++ +L EADVISLH       +  T HL+++ RLA ++    LVN
Sbjct: 153 -EPDGEFV------SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205

Query: 179 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 238
            SRG V+D  AL   L+      V LDV+E EP   P L   +  I  PHIA     + E
Sbjct: 206 ASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPEL-AARCLIATPHIA-GY--SLE 261

Query: 239 G--MATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALG 288
           G    T          +G     +   V P           +P    + AL 
Sbjct: 262 GKLRGTAQIYQAYCAWRGIAERVSLQDVLPETWLAG--LQLNPGCDPAWALA 311

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  190 bits (485), Expect = 2e-58
 Identities = 63/241 (26%), Positives = 94/241 (39%), Gaps = 49/241 (20%)

Query: 3   VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 62
            G ++VD     + GI     PG       E   S  L  A R                 
Sbjct: 70  AGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER----------------- 112

Query: 63  PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 122
                G  L+ +T+G++G G +GS     + E   +  +  D  +A R            
Sbjct: 113 ----DGFSLRDRTIGIVGVGNVGSRLQTRL-EALGIRTLLCDPPRAAR------------ 155

Query: 123 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 178
             +           ++DE+++EADV++ H          T HL ++  +  +K  AIL+N
Sbjct: 156 -GDEGDFR------TLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208

Query: 179 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 238
             RGPV+D  AL+  L       V LDV+E EP +   L E  + I   HIA     T E
Sbjct: 209 ACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIA-GY--TLE 264

Query: 239 G 239
           G
Sbjct: 265 G 265

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  118 bits (299), Expect = 1e-31
 Identities = 59/257 (22%), Positives = 99/257 (38%), Gaps = 40/257 (15%)

Query: 17  GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 76
              + N  G+     +E      L+  R++    E  +  L   W         LKG+T+
Sbjct: 89  DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRL---WQS--HPYQGLKGRTL 143

Query: 77  GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 136
            ++G G IG   A    + F M ++            F   Y                  
Sbjct: 144 LILGTGSIGQHIAHTG-KHFGMKVLGVS-RSGRERAGFDQVYQ---------------LP 186

Query: 137 SMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 195
           +++++L +AD ++S+ P   + T+HL    R    K  AIL N  RG  I+E  L+  L+
Sbjct: 187 ALNKMLAQADVIVSVLP-ATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245

Query: 196 QNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASASKWTREGMATLAALNVL 249
              +    LDVFE EP     L          N I+ PH ++ S    + +A +   N +
Sbjct: 246 TGKLGMAVLDVFEQEP-----LPADSPLWGQPNLIITPHNSAYS--FPDDVAQIFVRNYI 298

Query: 250 GKIKGYPIWGNPNQVEP 266
             I G P+     +++ 
Sbjct: 299 RFIDGQPL---DGKIDF 312

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  112 bits (282), Expect = 3e-29
 Identities = 50/249 (20%), Positives = 82/249 (32%), Gaps = 40/249 (16%)

Query: 25  GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI 84
             +     E A S  L   RR  +        L   W P        +  +VG++GAG +
Sbjct: 96  TGMGLQMQEYAVSQVLHWFRRFDDYQALKNQAL---WKP--LPEYTREEFSVGIMGAGVL 150

Query: 85  GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 144
           G+  A  +   +   L  +            +  G                  +   L +
Sbjct: 151 GAKVAESLQ-AWGFPLRCWS-RSRKSWPGVESYVG---------------REELRAFLNQ 193

Query: 145 AD-VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG 203
              +I+L P     T  +IN E L  +   A ++N +RG  + E  L+  L    +    
Sbjct: 194 TRVLINLLP-NTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAM 252

Query: 204 LDVFEDEPYMKPGLSE------MKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 257
           LDVF  EP     L +           + PHIA+ +           +  +    KG P+
Sbjct: 253 LDVFSQEP-----LPQESPLWRHPRVAMTPHIAAVT--RPAEAIDYISRTITQLEKGEPV 305

Query: 258 WGNPNQVEP 266
                QV+ 
Sbjct: 306 ---TGQVDR 311

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 18/134 (13%)

Query: 71  LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 130
           + G  V V+G GR+G + AR         +                     +   G +P 
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFA-ALGAKVKVGARESDLLAR---------IAEMGMEPF 202

Query: 131 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 190
              +     + LR+ DV             ++    LA M     +++ +  P   +   
Sbjct: 203 HISK---AAQELRDVDVCINT-----IPALVVTANVLAEMPSHTFVIDLASKPGGTDFRY 254

Query: 191 VEHLKQNPMFRVGL 204
            E      +   GL
Sbjct: 255 AEKRGIKALLVPGL 268

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 8e-05
 Identities = 48/334 (14%), Positives = 91/334 (27%), Gaps = 111/334 (33%)

Query: 30  TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-------VGNL----LKG--QTV 76
           TT     +  L+AA     + +     L    + +L          +L    L    + +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 77  GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-------- 128
            +I             +         +      +L   + +    L+    +        
Sbjct: 331 SIIAE----------SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 129 -------P-----VTWKRASS------MDEVLREADV--------ISLHPVLDKTTYHLI 162
                  P     + W           ++++ + + V        IS+  +  +    L 
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 163 NKERLATMKKEAILVN--------CSRGPVIDEVA------LVEHLKQ------NPMFRV 202
           N+  L        +V+         S   +   +       +  HLK         +FR 
Sbjct: 441 NEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR- 494

Query: 203 GLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGN-P 261
              VF D          ++  I       ++ W   G + L  L  L   K Y I  N P
Sbjct: 495 --MVFLD-------FRFLEQKI----RHDSTAWNASG-SILNTLQQLKFYKPY-ICDNDP 539

Query: 262 ------NQVEPFLNENAQPPAASPSIVNSKALGL 289
                 N +  FL      P    +++ SK   L
Sbjct: 540 KYERLVNAILDFL------PKIEENLICSKYTDL 567

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.93
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.9
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.85
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.84
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.83
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.76
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.72
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.71
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.69
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.65
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.63
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.51
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.4
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.39
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.37
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.35
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.35
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.34
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.33
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.31
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.31
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.28
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.28
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.28
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.27
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.24
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.23
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.23
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.22
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.22
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.22
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.21
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.17
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.14
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.13
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.13
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.08
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.07
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.07
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.04
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.02
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.02
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.02
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.0
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.99
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	98.99
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.97
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.96
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.96
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.95
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.94
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.93
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.93
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.92
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.9
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.89
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.88
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.87
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.87
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.39
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.86
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.85
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.79
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.77
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.76
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.74
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.74
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.72
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.71
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.71
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.68
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.67
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.66
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.65
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.62
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.62
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.58
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.54
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.52
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.52
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.51
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.51
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.51
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.5
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.46
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.46
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.45
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.44
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.44
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.43
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.42
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.42
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.42
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.41
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.41
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.4
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.4
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.4
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.39
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.39
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.38
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.38
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.37
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.36
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.36
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.33
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.33
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.32
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.31
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.29
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.29
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.29
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.27
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.24
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.24
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.21
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.19
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.11
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.1
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.1
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.1
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.1
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.08
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.07
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.05
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.05
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.05
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	98.05
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.04
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.03
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.02
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.95
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.91
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.9
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.88
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.85
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.79
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.78
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.77
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.77
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.76
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.76
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.75
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.75
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.74
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.72
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.71
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.71
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.7
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.69
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.69
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.67
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.67
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.64
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.61
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.61
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.56
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.56
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.55
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.55
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.54
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.53
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.53
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.53
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.52
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.52
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.48
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.48
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.47
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.46
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.44
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.44
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.44
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.43
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.42
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.42
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.41
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.41
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.4
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.4
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.34
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.34
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	97.33
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.32
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.31
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.29
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.23
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.22
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.22
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.22
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.21
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.21
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.21
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.2
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.16
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.16
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.15
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	97.14
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.13
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.13
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.12
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.06
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.05
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.05
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.04
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.03
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	97.0
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	96.96
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.95
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.95
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.94
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.93
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.93
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.93
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.93
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.91
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	96.9
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.89
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.88
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.87
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.87
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.84
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.84
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.84
4had_A	350	Probable oxidoreductase protein; structural genomi	96.83
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.83
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.83
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.82
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.81
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.79
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.79
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.79
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.79
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.78
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.76
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.75
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.73
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.72
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.7
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.7
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.7
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	96.68
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.68
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.68
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	96.68
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.68
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.66
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.64
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.63
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.62
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.62
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.61
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.59
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.59
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.58
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.57
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.56
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.56
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.55
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.53
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.53
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.49
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.48
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	96.47
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.47
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.46
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.45
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.45
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	96.45
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.44
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	96.44
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.42
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.42
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.41
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	96.4
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	96.39
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.35
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.35
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	96.34
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.34
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.34
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.34
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	96.33
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.33
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.32
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.32
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.32
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.31
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.31
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.3
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.3
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.3
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.29
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.28
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	96.28
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	96.28
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.28
3on5_A	362	BH1974 protein; structural genomics, joint center	96.26
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.25
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.24
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.24
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	96.24
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.23
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.22
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	96.22
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	96.21
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	96.21
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.2
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.2
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.19
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.19
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.19
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.17
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	96.17
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.16
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.15
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	96.14
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.14
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.13
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.13
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.13
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	96.13
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	96.13
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.12
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.12
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	96.1
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	96.09
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	96.08
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.07
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.06
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.05
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.05
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.05
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.04
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	96.03
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.01
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.0
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.99
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	95.98
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.98
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.96
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.95
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.95
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.94
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	95.94
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.92
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	95.9
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.9
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	95.9
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.88
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.87
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.86
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	95.83
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.82
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.82
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.81
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.76
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.75
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.75
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	95.74
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.72
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	95.71
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	95.69
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.67
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.67
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.65
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.64
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	95.63
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.63
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	95.61
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	95.61
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.6
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.59
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.57
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	95.56
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	95.55
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	95.55
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.52
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	95.48
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.47
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	95.47
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.47
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	95.44
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	95.41
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.38
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.38
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.37
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.37
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	95.34
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.33
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.33
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.32
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.32
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.28
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.22
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	95.21
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.17
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.15
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	95.15
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	95.14
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.14
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	95.14
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	95.13
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	95.12
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	95.11
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.08
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.03
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.02
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	95.02
1lnq_A	336	MTHK channels, potassium channel related protein;	95.0
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.98
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	94.94
1xq6_A	253	Unknown protein; structural genomics, protein stru	94.92
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	94.9
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	94.88
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	94.87
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	94.86
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	94.85
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	94.85
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	94.82
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	94.8
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.79
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	94.79
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.78
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	94.78
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	94.76
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	94.73
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	94.72
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	94.71
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.7
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	94.69
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.69
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	94.69
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	94.69
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	94.66
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	94.65
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.64
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.61
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	94.59
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	94.57
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.57
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.56
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.56
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	94.51
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	94.49
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	94.49
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	94.49
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	94.49
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	94.48
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	94.46
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	94.46
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	94.42
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.42
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	94.42
1xhl_A	297	Short-chain dehydrogenase/reductase family member	94.42
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.39
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.39
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.34
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.32
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.32
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	94.31
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.3

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=1.8e-65  Score=476.79  Aligned_cols=244  Identities=32%  Similarity=0.516  Sum_probs=225.5

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+||||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|..|.+....|.+|+||||||||
T Consensus       101 ~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIG  180 (345)
T 4g2n_A          101 LSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFG  180 (345)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEES
T ss_pred             cCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999998886555568899999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|+++ ++|||+|++||++.......            .    +.....++++++++||+|++|+|+|++|++
T Consensus       181 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~~~------------~----g~~~~~~l~ell~~sDvV~l~~Plt~~T~~  243 (345)
T 4g2n_A          181 MGRIGRAIATRA-RGFGLAIHYHNRTRLSHALE------------E----GAIYHDTLDSLLGASDIFLIAAPGRPELKG  243 (345)
T ss_dssp             CSHHHHHHHHHH-HTTTCEEEEECSSCCCHHHH------------T----TCEECSSHHHHHHTCSEEEECSCCCGGGTT
T ss_pred             eChhHHHHHHHH-HHCCCEEEEECCCCcchhhh------------c----CCeEeCCHHHHHhhCCEEEEecCCCHHHHH
Confidence            999999999997 79999999999986432111            0    123346899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM  240 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~~~~~  240 (294)
                      +|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||.+++|||++|||++|||+|++|.+++++|
T Consensus       244 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~  323 (345)
T 4g2n_A          244 FLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAM  323 (345)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHHH
T ss_pred             HhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999966689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCC
Q 022672          241 ATLAALNVLGKIKGYPIWGNP  261 (294)
Q Consensus       241 ~~~~~~nl~~~~~g~~~~~~~  261 (294)
                      ...+++|+.+|++|+++.+.+
T Consensus       324 ~~~~~~ni~~~l~g~~~~~~V  344 (345)
T 4g2n_A          324 GWLLIQGIEALNQSDVPDNLI  344 (345)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBC
T ss_pred             HHHHHHHHHHHHcCCCCCCCc
Confidence            999999999999999987765

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=1.9e-66  Score=482.35  Aligned_cols=243  Identities=32%  Similarity=0.439  Sum_probs=221.5

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|++..+++.++++.|..|..  ..+.+|+|||+||||
T Consensus        71 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiG  148 (334)
T 3kb6_A           71 RSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSE--ILARELNRLTLGVIG  148 (334)
T ss_dssp             SSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGG--GCBCCGGGSEEEEEC
T ss_pred             CCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccccccccccccccccc--cccceecCcEEEEEC
Confidence            589999999999999999999999999999999999999999999999999999999865543  457899999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+.+|+++ ++|||+|++||++.......           .     + ....+++|++++||+|++|||+|++|++
T Consensus       149 ~G~IG~~va~~~-~~fg~~v~~~d~~~~~~~~~-----------~-----~-~~~~~l~ell~~sDivslh~Plt~~T~~  210 (334)
T 3kb6_A          149 TGRIGSRVAMYG-LAFGMKVLCYDVVKREDLKE-----------K-----G-CVYTSLDELLKESDVISLHVPYTKETHH  210 (334)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH-----------T-----T-CEECCHHHHHHHCSEEEECCCCCTTTTT
T ss_pred             cchHHHHHHHhh-cccCceeeecCCccchhhhh-----------c-----C-ceecCHHHHHhhCCEEEEcCCCChhhcc
Confidence            999999999996 89999999999876543211           0     0 1246899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-C---------------CccCCCCeE
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-P---------------GLSEMKNAI  224 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~---------------~L~~~~nvi  224 (294)
                      +||++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||++. +               |||++|||+
T Consensus       211 li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvi  290 (334)
T 3kb6_A          211 MINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVI  290 (334)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEE
T ss_pred             CcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEE
Confidence            999999999999999999999999999999999999999999999999999742 2               689999999


Q ss_pred             EccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          225 VVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       225 iTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      +|||+||+|.++++++.+.+++|+.+|++|++....+|.
T Consensus       291 lTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n~  329 (334)
T 3kb6_A          291 ITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGNF  329 (334)
T ss_dssp             ECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGGE
T ss_pred             ECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCCc
Confidence            999999999999999999999999999999987655554

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.1e-63  Score=463.92  Aligned_cols=241  Identities=33%  Similarity=0.516  Sum_probs=196.9

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+||||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|..+.. ...|.+|+||||||||
T Consensus       100 ~g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~-~~~~~~l~gktiGIIG  178 (340)
T 4dgs_A          100 NGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQ-LPLGHSPKGKRIGVLG  178 (340)
T ss_dssp             ESSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC-------CCCCCCTTCEEEEEC
T ss_pred             CCCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccC-cCccccccCCEEEEEC
Confidence            489999999999999999999999999999999999999999999999999999999865411 1246899999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|+++ ++|||+|++||++....                   .+.....+++|++++||+|++|+|++++|++
T Consensus       179 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~-------------------~~~~~~~sl~ell~~aDvVil~vP~t~~t~~  238 (340)
T 4dgs_A          179 LGQIGRALASRA-EAFGMSVRYWNRSTLSG-------------------VDWIAHQSPVDLARDSDVLAVCVAASAATQN  238 (340)
T ss_dssp             CSHHHHHHHHHH-HTTTCEEEEECSSCCTT-------------------SCCEECSSHHHHHHTCSEEEECC--------
T ss_pred             CCHHHHHHHHHH-HHCCCEEEEEcCCcccc-------------------cCceecCCHHHHHhcCCEEEEeCCCCHHHHH
Confidence            999999999997 79999999999876431                   1123356899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM  240 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~~~~~  240 (294)
                      +++++.|+.||+|++|||+|||++||+++|+++|++|+|+||+||||++||++.+|||++|||++|||+|++|.++++++
T Consensus       239 li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~~  318 (340)
T 4dgs_A          239 IVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAM  318 (340)
T ss_dssp             --CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHHH
T ss_pred             HhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCC
Q 022672          241 ATLAALNVLGKIKGYPIWGNPN  262 (294)
Q Consensus       241 ~~~~~~nl~~~~~g~~~~~~~n  262 (294)
                      ...+++|+.+|++|+++.+.+|
T Consensus       319 ~~~~~~nl~~~~~g~~~~~~Vn  340 (340)
T 4dgs_A          319 GKLVLANLAAHFAGEKAPNTVN  340 (340)
T ss_dssp             HHHHHHHHHHHHTTSCCTTBC-
T ss_pred             HHHHHHHHHHHHcCCCCCCCcC
Confidence            9999999999999999988776

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=3.6e-63  Score=459.72  Aligned_cols=246  Identities=34%  Similarity=0.508  Sum_probs=225.4

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+||||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|..|.+ ...|.+|+|+||||||
T Consensus        74 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~~l~g~tvGIIG  152 (330)
T 4e5n_A           74 ALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLG  152 (330)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCS-CCCCCCSTTCEEEEEC
T ss_pred             CCCcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCc-cccCCccCCCEEEEEe
Confidence            489999999999999999999999999999999999999999999999999999999998876 3457899999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|++| ++|||+|++||++....... ..             .+. ...++++++++||+|++|+|+|++|++
T Consensus       153 ~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~-~~-------------~g~-~~~~l~ell~~aDvV~l~~P~t~~t~~  216 (330)
T 4e5n_A          153 MGAIGLAMADRL-QGWGATLQYHEAKALDTQTE-QR-------------LGL-RQVACSELFASSDFILLALPLNADTLH  216 (330)
T ss_dssp             CSHHHHHHHHHT-TTSCCEEEEECSSCCCHHHH-HH-------------HTE-EECCHHHHHHHCSEEEECCCCSTTTTT
T ss_pred             eCHHHHHHHHHH-HHCCCEEEEECCCCCcHhHH-Hh-------------cCc-eeCCHHHHHhhCCEEEEcCCCCHHHHH
Confidence            999999999997 79999999999986321111 00             011 224899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCC-------CCC-CCCccCCCCeEEccCCCCC
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-------PYM-KPGLSEMKNAIVVPHIASA  232 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~E-------P~~-~~~L~~~~nviiTPHia~~  232 (294)
                      +++++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++|       |++ ++|||++|||++|||+|++
T Consensus       217 li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~  296 (330)
T 4e5n_A          217 LVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSA  296 (330)
T ss_dssp             CBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTC
T ss_pred             HhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCC
Confidence            99999999999999999999999999999999999999999999999999       975 4799999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          233 SKWTREGMATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       233 t~~~~~~~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      |.++.+++...+++|+.+|++|+++.+.+|.
T Consensus       297 t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~  327 (330)
T 4e5n_A          297 VRAVRLEIERCAAQNILQALAGERPINAVNR  327 (330)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCTTBSSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCCCCCccCC
Confidence            9999999999999999999999999888775

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=2.4e-62  Score=458.36  Aligned_cols=243  Identities=24%  Similarity=0.355  Sum_probs=218.6

Q ss_pred             ccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCC-cccCcccCCCEEEEEc
Q 022672            2 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN-LFVGNLLKGQTVGVIG   80 (294)
Q Consensus         2 g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~-~~~g~~l~gktvGIIG   80 (294)
                      |+||||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|. |... ...+.+|+||||||||
T Consensus       105 ~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~-w~~~~~~~~~~l~gktvGIIG  183 (365)
T 4hy3_A          105 SNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTEL-WGGEGNASARLIAGSEIGIVG  183 (365)
T ss_dssp             SSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCC-CSSSSTTSCCCSSSSEEEEEC
T ss_pred             ccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCcc-ccccccccccccCCCEEEEec
Confidence            6899999999999999999999999999999999999999999999999999999974 6532 2457899999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|+++ ++|||+|++||++.......          ..+     . ...++++++++||+|++|+|++++|++
T Consensus       184 lG~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~~g-----~-~~~~l~ell~~aDvV~l~~Plt~~T~~  246 (365)
T 4hy3_A          184 FGDLGKALRRVL-SGFRARIRVFDPWLPRSMLE----------ENG-----V-EPASLEDVLTKSDFIFVVAAVTSENKR  246 (365)
T ss_dssp             CSHHHHHHHHHH-TTSCCEEEEECSSSCHHHHH----------HTT-----C-EECCHHHHHHSCSEEEECSCSSCC---
T ss_pred             CCcccHHHHHhh-hhCCCEEEEECCCCCHHHHh----------hcC-----e-eeCCHHHHHhcCCEEEEcCcCCHHHHh
Confidence            999999999997 79999999999985432110          011     1 135899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCcHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG  239 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t~~~~~~  239 (294)
                      +|+++.|+.||+|++|||+|||++||++||+++|++|+|+ |+||||++||++. +|||++|||++|||+||+|.+++++
T Consensus       247 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~  325 (365)
T 4hy3_A          247 FLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKK  325 (365)
T ss_dssp             CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHH
T ss_pred             hcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHH
Confidence            9999999999999999999999999999999999999998 9999999999864 7999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          240 MATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       240 ~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      |...+++|+.+|++|+|+.+.+|.
T Consensus       326 ~~~~~~~ni~~~~~G~~~~~~vn~  349 (365)
T 4hy3_A          326 MGDMVLEDMDLMDRGLPPMRCKRA  349 (365)
T ss_dssp             HHHHHHHHHHHHHTTCCCCSSEEC
T ss_pred             HHHHHHHHHHHHHcCCCccccccc
Confidence            999999999999999999888765

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=5.6e-63  Score=459.69  Aligned_cols=242  Identities=30%  Similarity=0.460  Sum_probs=218.6

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHH-cCCCCCCCCCcccCcccCCCEEEEE
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR-AGLYDGWLPNLFVGNLLKGQTVGVI   79 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~-~~~~~~w~~~~~~g~~l~gktvGII   79 (294)
                      +|+||||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.++ +|.|. |... ..+.+|+|||||||
T Consensus        77 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~-w~~~-~~~~~l~gktvgIi  154 (343)
T 2yq5_A           77 RIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFT-WPSN-LISNEIYNLTVGLI  154 (343)
T ss_dssp             SSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCC-CCGG-GCBCCGGGSEEEEE
T ss_pred             CceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcc-cccC-CCccccCCCeEEEE
Confidence            489999999999999999999999999999999999999999999999999999 99885 7432 46789999999999


Q ss_pred             cCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcccc
Q 022672           80 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  159 (294)
Q Consensus        80 GlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~  159 (294)
                      |+|.||+++|+++ ++|||+|++||++.....+               ..  . ...++++++++||+|++|+|+|++|+
T Consensus       155 GlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~---------------~~--~-~~~~l~ell~~aDvV~l~~Plt~~t~  215 (343)
T 2yq5_A          155 GVGHIGSAVAEIF-SAMGAKVIAYDVAYNPEFE---------------PF--L-TYTDFDTVLKEADIVSLHTPLFPSTE  215 (343)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSSCCGGGT---------------TT--C-EECCHHHHHHHCSEEEECCCCCTTTT
T ss_pred             ecCHHHHHHHHHH-hhCCCEEEEECCChhhhhh---------------cc--c-cccCHHHHHhcCCEEEEcCCCCHHHH
Confidence            9999999999997 7999999999998753211               00  1 22489999999999999999999999


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC--CCCC------------CccCCCCeEE
Q 022672          160 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKP------------GLSEMKNAIV  225 (294)
Q Consensus       160 ~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP--~~~~------------~L~~~~nvii  225 (294)
                      ++|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||  ++.+            |||++|||++
T Consensus       216 ~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvil  295 (343)
T 2yq5_A          216 NMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVI  295 (343)
T ss_dssp             TCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEE
T ss_pred             HHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999  4432            7999999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          226 VPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       226 TPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      |||+|++|.+++++|.+.+++|+.+|++|+++.|.+|.
T Consensus       296 TPHia~~t~ea~~~~~~~~~~ni~~~l~g~~~~~~v~~  333 (343)
T 2yq5_A          296 TPHSAFYTETSIRNMVQICLTDQLTIAKGGRPRSIVNL  333 (343)
T ss_dssp             CSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCTTBC--
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHcCCCCCceECC
Confidence            99999999999999999999999999999999887765

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=7.7e-62  Score=460.64  Aligned_cols=244  Identities=32%  Similarity=0.426  Sum_probs=218.8

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|.++   .+.+.+++|||+||||
T Consensus        87 ~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~---~~~~~el~gktvGIIG  163 (416)
T 3k5p_A           87 FSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKT---AIGSREVRGKTLGIVG  163 (416)
T ss_dssp             CSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC---CTTCCCSTTCEEEEEC
T ss_pred             CccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhccccccc---CCCCccCCCCEEEEEe
Confidence            4899999999999999999999999999999999999999999999999999999997643   2346799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+.+|+++ ++|||+|++||++.....                  .......++++++++||+|++|+|++++|++
T Consensus       164 lG~IG~~vA~~l-~~~G~~V~~yd~~~~~~~------------------~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~  224 (416)
T 3k5p_A          164 YGNIGSQVGNLA-ESLGMTVRYYDTSDKLQY------------------GNVKPAASLDELLKTSDVVSLHVPSSKSTSK  224 (416)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECTTCCCCB------------------TTBEECSSHHHHHHHCSEEEECCCC-----C
T ss_pred             eCHHHHHHHHHH-HHCCCEEEEECCcchhcc------------------cCcEecCCHHHHHhhCCEEEEeCCCCHHHhh
Confidence            999999999996 799999999998643210                  0123457899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-----CCccCCCCeEEccCCCCCcHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIASASKW  235 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-----~~L~~~~nviiTPHia~~t~~  235 (294)
                      +|+++.|+.||+|++|||+|||++||++||+++|++|+++||+||||++||++.     +|||++|||++|||+||+|.+
T Consensus       225 li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~e  304 (416)
T 3k5p_A          225 LITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEE  304 (416)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHH
T ss_pred             hcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHH
Confidence            999999999999999999999999999999999999999999999999999864     589999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 022672          236 TREGMATLAALNVLGKIKGYPIWGNPNQVEP  266 (294)
Q Consensus       236 ~~~~~~~~~~~nl~~~~~g~~~~~~~n~~~~  266 (294)
                      +.+++...+++|+.+|++|+...+.+|.++.
T Consensus       305 a~~~~~~~~~~nl~~~l~~g~~~~~Vn~p~~  335 (416)
T 3k5p_A          305 AQERIGTEVTRKLVEYSDVGSTVGAVNFPQV  335 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCTTBSSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCceeeCCCc
Confidence            9999999999999999988888899998443

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=2.2e-62  Score=452.92  Aligned_cols=242  Identities=23%  Similarity=0.284  Sum_probs=218.6

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHH-HHHHHcCCCCCCCCCcccCcccCCCEEEEE
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA-DEFMRAGLYDGWLPNLFVGNLLKGQTVGVI   79 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~-~~~~~~~~~~~w~~~~~~g~~l~gktvGII   79 (294)
                      +|+|||+||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+ ++.++++.|....    .+.+|+|||||||
T Consensus        68 ~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~----~~~~l~gktvGIi  143 (324)
T 3evt_A           68 ISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM----TTSTLTGQQLLIY  143 (324)
T ss_dssp             SSSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS----CCCCSTTCEEEEE
T ss_pred             CCccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC----CCccccCCeEEEE
Confidence            5899999999999999999999999999999999999999999999999 9999998875421    4679999999999


Q ss_pred             cCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcccc
Q 022672           80 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  159 (294)
Q Consensus        80 GlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~  159 (294)
                      |+|.||+++|++| ++|||+|++||++..... .              . .......++++++++||+|++|+|+|++|+
T Consensus       144 GlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~-~--------------~-~~~~~~~~l~ell~~aDvV~l~lPlt~~t~  206 (324)
T 3evt_A          144 GTGQIGQSLAAKA-SALGMHVIGVNTTGHPAD-H--------------F-HETVAFTATADALATANFIVNALPLTPTTH  206 (324)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEEESSCCCCT-T--------------C-SEEEEGGGCHHHHHHCSEEEECCCCCGGGT
T ss_pred             CcCHHHHHHHHHH-HhCCCEEEEECCCcchhH-h--------------H-hhccccCCHHHHHhhCCEEEEcCCCchHHH
Confidence            9999999999997 799999999998764310 0              0 001234689999999999999999999999


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCcHHHHH
Q 022672          160 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTRE  238 (294)
Q Consensus       160 ~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t~~~~~  238 (294)
                      ++++++.|+.||+|++|||+|||+++|++||+++|++|+|+||+||||++||++. +|||++|||++|||+|++|.++.+
T Consensus       207 ~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~  286 (324)
T 3evt_A          207 HLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRA  286 (324)
T ss_dssp             TCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHH
T ss_pred             HhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHH
Confidence            9999999999999999999999999999999999999999999999999999875 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcC-CCCCCCCCC
Q 022672          239 GMATLAALNVLGKIKG-YPIWGNPNQ  263 (294)
Q Consensus       239 ~~~~~~~~nl~~~~~g-~~~~~~~n~  263 (294)
                      ++.+.+++|+.+|++| +++.|.+|.
T Consensus       287 ~~~~~~~~nl~~~l~~~~~~~n~V~~  312 (324)
T 3evt_A          287 TVFPIFAANFAQFVKDGTLVRNQVDL  312 (324)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCSCBCC-
T ss_pred             HHHHHHHHHHHHHHhCCCCCCceECc
Confidence            9999999999999965 567777765

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=1.2e-61  Score=452.59  Aligned_cols=245  Identities=30%  Similarity=0.418  Sum_probs=221.0

Q ss_pred             Ccccc----CcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCC-------CCCCcccCc
Q 022672            1 MAVGY----NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-------WLPNLFVGN   69 (294)
Q Consensus         1 ~g~G~----d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~-------w~~~~~~g~   69 (294)
                      +|+|+    ||||+++|+++||.|+|+||+ +.+||||+++++|++.|+++.+++.+++|.|..       |.+....+.
T Consensus        78 ~g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~  156 (352)
T 3gg9_A           78 TGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGR  156 (352)
T ss_dssp             SSCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBC
T ss_pred             eCcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCc
Confidence            48999    999999999999999999999 999999999999999999999999999999864       433334578


Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      +|+||||||||+|.||+++|+++ ++|||+|++||++....  ...        .     .+.....++++++++||+|+
T Consensus       157 ~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~--~~~--------~-----~g~~~~~~l~ell~~aDiV~  220 (352)
T 3gg9_A          157 VLKGQTLGIFGYGKIGQLVAGYG-RAFGMNVLVWGRENSKE--RAR--------A-----DGFAVAESKDALFEQSDVLS  220 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSHHHHH--HHH--------H-----TTCEECSSHHHHHHHCSEEE
T ss_pred             cCCCCEEEEEeECHHHHHHHHHH-HhCCCEEEEECCCCCHH--HHH--------h-----cCceEeCCHHHHHhhCCEEE
Confidence            99999999999999999999997 79999999999875321  100        1     11233468999999999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC-CCCccCCCCeEEccC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPH  228 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~L~~~~nviiTPH  228 (294)
                      +|+|++++|+++++++.|+.||+|++|||+|||++||+++|+++|++|+|+||+||||++||++ ++|||++|||++|||
T Consensus       221 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPH  300 (352)
T 3gg9_A          221 VHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPH  300 (352)
T ss_dssp             ECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCS
T ss_pred             EeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCC
Confidence            9999999999999999999999999999999999999999999999999999999999999987 489999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          229 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       229 ia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      +|++|.++.+++...+++|+.+|++|+|+ +.+|.
T Consensus       301 ia~~t~e~~~~~~~~~~~ni~~~~~G~p~-~~Vn~  334 (352)
T 3gg9_A          301 IGYVERESYEMYFGIAFQNILDILQGNVD-SVANP  334 (352)
T ss_dssp             CTTCBHHHHHHHHHHHHHHHHHHHTTCCT-TBSCG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHcCCCC-cccCH
Confidence            99999999999999999999999999885 55543

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=5.6e-62  Score=449.72  Aligned_cols=238  Identities=25%  Similarity=0.283  Sum_probs=216.0

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|||+||++++++ ||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|...     .+.+|+|+||||||
T Consensus        74 ~~~G~d~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g~tvGIIG  147 (324)
T 3hg7_A           74 TYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH-----PYQGLKGRTLLILG  147 (324)
T ss_dssp             SSSCCGGGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTTCEEEEEC
T ss_pred             CCCCCCccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC-----CCcccccceEEEEE
Confidence            589999999998865 999999999999999999999999999999999999999987542     35789999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|++| ++|||+|++||++..... .              . .......++++++++||+|++|+|+|++|++
T Consensus       148 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~-~--------------~-~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~  210 (324)
T 3hg7_A          148 TGSIGQHIAHTG-KHFGMKVLGVSRSGRERA-G--------------F-DQVYQLPALNKMLAQADVIVSVLPATRETHH  210 (324)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCCCT-T--------------C-SEEECGGGHHHHHHTCSEEEECCCCCSSSTT
T ss_pred             ECHHHHHHHHHH-HhCCCEEEEEcCChHHhh-h--------------h-hcccccCCHHHHHhhCCEEEEeCCCCHHHHH
Confidence            999999999997 799999999998763210 0              0 0112346899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCcHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG  239 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t~~~~~~  239 (294)
                      +++++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||+|. +|||++|||++|||+|++|.+  .+
T Consensus       211 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~  288 (324)
T 3hg7_A          211 LFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DD  288 (324)
T ss_dssp             SBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HH
T ss_pred             HhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HH
Confidence            999999999999999999999999999999999999999999999999999875 799999999999999999975  57


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          240 MATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       240 ~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      +.+.+++|+.+|++|+++.|.+|.
T Consensus       289 ~~~~~~~nl~~~~~G~~~~~~V~~  312 (324)
T 3hg7_A          289 VAQIFVRNYIRFIDGQPLDGKIDF  312 (324)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             HHHHHHHHHHHHHcCCCCcceECh
Confidence            999999999999999999888876

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=2.8e-62  Score=456.54  Aligned_cols=240  Identities=25%  Similarity=0.319  Sum_probs=216.8

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|... .....+.+|+|+||||||
T Consensus        93 ~g~G~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~-~~~~~~~~l~gktvGIIG  171 (351)
T 3jtm_A           93 AGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVA-GIAYRAYDLEGKTIGTVG  171 (351)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHH-HHHTTCCCSTTCEEEEEC
T ss_pred             eCeeecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccc-cccCCcccccCCEEeEEE
Confidence            4899999999999999999999999999999999999999999999999999999987521 111235789999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|++| ++|||+|++||++.......  .       .     .+.....++++++++||+|++|+|+|++|++
T Consensus       172 ~G~IG~~vA~~l-~~~G~~V~~~dr~~~~~~~~--~-------~-----~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~  236 (351)
T 3jtm_A          172 AGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELE--K-------E-----TGAKFVEDLNEMLPKCDVIVINMPLTEKTRG  236 (351)
T ss_dssp             CSHHHHHHHHHH-GGGCCEEEEECSSCCCHHHH--H-------H-----HCCEECSCHHHHGGGCSEEEECSCCCTTTTT
T ss_pred             eCHHHHHHHHHH-HHCCCEEEEeCCCccCHHHH--H-------h-----CCCeEcCCHHHHHhcCCEEEECCCCCHHHHH
Confidence            999999999997 79999999999875322110  0       0     1123446899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCcHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG  239 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t~~~~~~  239 (294)
                      +|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||+|. +|||++|||++|||+||+|.++..+
T Consensus       237 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~  316 (351)
T 3jtm_A          237 MFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLR  316 (351)
T ss_dssp             CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHH
T ss_pred             hhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999875 7999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCC
Q 022672          240 MATLAALNVLGKIKGYP  256 (294)
Q Consensus       240 ~~~~~~~nl~~~~~g~~  256 (294)
                      +...+++|+.+|++|++
T Consensus       317 ~~~~~~~nl~~~~~g~~  333 (351)
T 3jtm_A          317 YAAGTKDMLERYFKGED  333 (351)
T ss_dssp             HHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999999999996

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=2e-61  Score=458.65  Aligned_cols=242  Identities=28%  Similarity=0.409  Sum_probs=214.3

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+++++++.+++|.|.++   .+.+.+|+|||+||||
T Consensus        76 ~~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~---~~~~~el~gktlGiIG  152 (404)
T 1sc6_A           76 FAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL---AAGSFEARGKKLGIIG  152 (404)
T ss_dssp             CSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEEEC
T ss_pred             CCcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCcccc---CCCccccCCCEEEEEe
Confidence            5899999999999999999999999999999999999999999999999999999997543   2346799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+.+|+++ ++|||+|++||++.....              +    +.....+++|++++||+|++|+|++++|++
T Consensus       153 lG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~--------------~----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~  213 (404)
T 1sc6_A          153 YGHIGTQLGILA-ESLGMYVYFYDIENKLPL--------------G----NATQVQHLSDLLNMSDVVSLHVPENPSTKN  213 (404)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCCCC--------------T----TCEECSCHHHHHHHCSEEEECCCSSTTTTT
T ss_pred             ECHHHHHHHHHH-HHCCCEEEEEcCCchhcc--------------C----CceecCCHHHHHhcCCEEEEccCCChHHHH
Confidence            999999999997 799999999998653210              0    122346899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC-----CCCccCCCCeEEccCCCCCcHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-----KPGLSEMKNAIVVPHIASASKW  235 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-----~~~L~~~~nviiTPHia~~t~~  235 (294)
                      +|+++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||+.||++     .+|||++|||++|||+|++|.+
T Consensus       214 li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~e  293 (404)
T 1sc6_A          214 MMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQE  293 (404)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHH
T ss_pred             HhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHH
Confidence            99999999999999999999999999999999999999999999999999986     3589999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 022672          236 TREGMATLAALNVLGKIKGYPIWGNPNQV  264 (294)
Q Consensus       236 ~~~~~~~~~~~nl~~~~~g~~~~~~~n~~  264 (294)
                      +.+++...+++|+.+|++|+++.+.+|..
T Consensus       294 a~~~~~~~~~~nl~~~l~g~~~~~~vn~p  322 (404)
T 1sc6_A          294 AQENIGLEVAGKLIKYSDNGSTLSAVNFP  322 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCTTBSSSC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceeccc
Confidence            99999999999999999999988888874

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=2.2e-60  Score=441.89  Aligned_cols=242  Identities=31%  Similarity=0.467  Sum_probs=219.9

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+||||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|. |..  ..+.++.|+||||||
T Consensus        77 ~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~--~~~~~l~g~~vgIiG  153 (333)
T 1j4a_A           77 RNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVG  153 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEEC
T ss_pred             CCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCc-cCC--cccccCCCCEEEEEc
Confidence            48999999999999999999999999999999999999999999999999999999985 643  356799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|+++ ++||++|++||++.....+.            .     .....++++++++||+|++|+|++++|++
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvV~l~~p~~~~t~~  215 (333)
T 1j4a_A          154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK------------K-----GYYVDSLDDLYKQADVISLHVPDVPANVH  215 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH------------T-----TCBCSCHHHHHHHCSEEEECSCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhHHh------------h-----CeecCCHHHHHhhCCEEEEcCCCcHHHHH
Confidence            999999999997 79999999999987543110            0     11224899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCC--CC--------C----CccCCCCeEEc
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK--------P----GLSEMKNAIVV  226 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~--------~----~L~~~~nviiT  226 (294)
                      +++++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||.  |.        +    |||++|||++|
T Consensus       216 li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilT  295 (333)
T 1j4a_A          216 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVT  295 (333)
T ss_dssp             CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEEC
T ss_pred             HHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEEC
Confidence            9999999999999999999999999999999999999999999999999993  32        2    59999999999


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          227 PHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       227 PHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      ||+|++|.++.+++.+.+++|+.+|++|+++.+.+|.
T Consensus       296 PHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~  332 (333)
T 1j4a_A          296 PKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPVKV  332 (333)
T ss_dssp             SSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBCCC
T ss_pred             CccccCHHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Confidence            9999999999999999999999999999998777653

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=8.9e-61  Score=444.41  Aligned_cols=242  Identities=29%  Similarity=0.444  Sum_probs=219.4

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+||||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|. |.. ...+.++.|+||||||
T Consensus        75 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~-~~~~~~l~g~~vgIiG  152 (333)
T 1dxy_A           75 RNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE-KAG-TFIGKELGQQTVGVMG  152 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHH-HHT-CCCCCCGGGSEEEEEC
T ss_pred             cCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcc-ccc-CCCccCCCCCEEEEEC
Confidence            48999999999999999999999999999999999999999999999999999999984 511 1346799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+.+|+++ ++|||+|++||++.....                ... . ...++++++++||+|++|+|++++|++
T Consensus       153 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~----------------~~~-~-~~~~l~ell~~aDvV~~~~P~~~~t~~  213 (333)
T 1dxy_A          153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGD----------------HPD-F-DYVSLEDLFKQSDVIDLHVPGIEQNTH  213 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCSSC----------------CTT-C-EECCHHHHHHHCSEEEECCCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhh----------------Hhc-c-ccCCHHHHHhcCCEEEEcCCCchhHHH
Confidence            999999999997 799999999998764310                001 1 234899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCC-----------CC---CCccCCCCeEEc
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-----------MK---PGLSEMKNAIVV  226 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~-----------~~---~~L~~~~nviiT  226 (294)
                      +++++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+           +.   +|||++|||++|
T Consensus       214 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~T  293 (333)
T 1dxy_A          214 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLS  293 (333)
T ss_dssp             SBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEEC
T ss_pred             HhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEEC
Confidence            9999999999999999999999999999999999999999999999999993           22   479999999999


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          227 PHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       227 PHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      ||+|++|.++.+++.+.+++|+.+|++|+++.+.+|.
T Consensus       294 PHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~~  330 (333)
T 1dxy_A          294 PHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEVTG  330 (333)
T ss_dssp             SSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTEECC
T ss_pred             CccccChHHHHHHHHHHHHHHHHHHHcCCCCCceeCC
Confidence            9999999999999999999999999999998877765

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=1.6e-60  Score=438.98  Aligned_cols=239  Identities=20%  Similarity=0.252  Sum_probs=213.4

Q ss_pred             CccccCcc-c-HHH---HHhCCcEEEeCCCCC-cchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCC
Q 022672            1 MAVGYNNV-D-VNA---ANKYGIAVGNTPGVL-TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ   74 (294)
Q Consensus         1 ~g~G~d~i-d-~~~---~~~~gI~v~n~~~~~-~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gk   74 (294)
                      +|+|+||| | +++   +.++||.|+|++++. +.+||||+++++|++.|+++.+++.+++|.|..+     .+.+++||
T Consensus        66 ~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g~  140 (315)
T 3pp8_A           66 LGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL-----PEYTREEF  140 (315)
T ss_dssp             SSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTTC
T ss_pred             CCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC-----CCCCcCCC
Confidence            58999999 7 887   788999999999875 7999999999999999999999999999987643     35789999


Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  154 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl  154 (294)
                      ||||||+|.||+++|++| ++|||+|++||++.... +.               ........++++++++||+|++|+|+
T Consensus       141 tvGIiG~G~IG~~vA~~l-~~~G~~V~~~dr~~~~~-~~---------------~~~~~~~~~l~ell~~aDiV~l~~Pl  203 (315)
T 3pp8_A          141 SVGIMGAGVLGAKVAESL-QAWGFPLRCWSRSRKSW-PG---------------VESYVGREELRAFLNQTRVLINLLPN  203 (315)
T ss_dssp             CEEEECCSHHHHHHHHHH-HTTTCCEEEEESSCCCC-TT---------------CEEEESHHHHHHHHHTCSEEEECCCC
T ss_pred             EEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCchhh-hh---------------hhhhcccCCHHHHHhhCCEEEEecCC
Confidence            999999999999999997 79999999999876431 00               00011125799999999999999999


Q ss_pred             CccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCc
Q 022672          155 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASAS  233 (294)
Q Consensus       155 t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t  233 (294)
                      |++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||+|. +|||++|||++|||+|++|
T Consensus       204 t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t  283 (315)
T 3pp8_A          204 TAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVT  283 (315)
T ss_dssp             CGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCC
T ss_pred             chhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCccc
Confidence            999999999999999999999999999999999999999999999999999999999875 8999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          234 KWTREGMATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       234 ~~~~~~~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      .+  +++.+.+++|+.+|++|+++.|.+|.
T Consensus       284 ~~--~~~~~~~~~ni~~~~~G~~~~~~V~~  311 (315)
T 3pp8_A          284 RP--AEAIDYISRTITQLEKGEPVTGQVDR  311 (315)
T ss_dssp             CH--HHHHHHHHHHHHHHHHTCCCCCBCCC
T ss_pred             HH--HHHHHHHHHHHHHHHcCCCCCceECc
Confidence            75  67999999999999999999888775

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=3e-60  Score=440.59  Aligned_cols=241  Identities=24%  Similarity=0.368  Sum_probs=218.6

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+||||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|. |.. ...+.++.|+||||||
T Consensus        76 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~-~~~~~~l~g~~vgIiG  153 (331)
T 1xdw_A           76 RTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK-VDA-FMFSKEVRNCTVGVVG  153 (331)
T ss_dssp             SSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCC-CCS-TTCCCCGGGSEEEEEC
T ss_pred             ccccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCc-ccc-CcCccCCCCCEEEEEC
Confidence            48999999999999999999999999999999999999999999999999999999985 622 2356799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+.+|+++ ++|||+|++||++.....+                .. . ...++++++++||+|++|+|++++|++
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~----------------~~-~-~~~~l~ell~~aDvV~~~~p~t~~t~~  214 (331)
T 1xdw_A          154 LGRIGRVAAQIF-HGMGATVIGEDVFEIKGIE----------------DY-C-TQVSLDEVLEKSDIITIHAPYIKENGA  214 (331)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCCSCT----------------TT-C-EECCHHHHHHHCSEEEECCCCCTTTCC
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCccHHHH----------------hc-c-ccCCHHHHHhhCCEEEEecCCchHHHH
Confidence            999999999997 7999999999987643100                00 1 234899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCC--CC--------C----CccCC-CCeEE
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK--------P----GLSEM-KNAIV  225 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~--------~----~L~~~-~nvii  225 (294)
                      +|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+  +.        +    |||++ |||++
T Consensus       215 li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvil  294 (331)
T 1xdw_A          215 VVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLI  294 (331)
T ss_dssp             SBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEE
T ss_pred             HhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEE
Confidence            9999999999999999999999999999999999999999999999999994  21        2    79999 99999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 022672          226 VPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  262 (294)
Q Consensus       226 TPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~~n  262 (294)
                      |||+|++|.++.+++.+.+++|+.+|++|+++.|.+|
T Consensus       295 TPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  331 (331)
T 1xdw_A          295 TPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKIK  331 (331)
T ss_dssp             CCSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTBCC
T ss_pred             cCccccChHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999999999998877664

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=3.4e-60  Score=447.74  Aligned_cols=249  Identities=23%  Similarity=0.281  Sum_probs=222.0

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|... .....+.+|+|+||||||
T Consensus       120 ~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~-~~~~~~~~l~gktvGIIG  198 (393)
T 2nac_A          120 AGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIA-DCVSHAYDLEAMHVGTVA  198 (393)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHH-HHHTTCCCCTTCEEEEEC
T ss_pred             cCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCcc-ccccCCccCCCCEEEEEe
Confidence            4899999999999999999999999999999999999999999999999999999987421 111235789999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|+++ ++|||+|++||++.......  ..            .+.....++++++++||+|++|+|++++|++
T Consensus       199 lG~IG~~vA~~l-~a~G~~V~~~d~~~~~~~~~--~~------------~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~  263 (393)
T 2nac_A          199 AGRIGLAVLRRL-APFDVHLHYTDRHRLPESVE--KE------------LNLTWHATREDMYPVCDVVTLNCPLHPETEH  263 (393)
T ss_dssp             CSHHHHHHHHHH-GGGTCEEEEECSSCCCHHHH--HH------------HTCEECSSHHHHGGGCSEEEECSCCCTTTTT
T ss_pred             ECHHHHHHHHHH-HhCCCEEEEEcCCccchhhH--hh------------cCceecCCHHHHHhcCCEEEEecCCchHHHH
Confidence            999999999997 79999999999875432110  00            1112235899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCcHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG  239 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t~~~~~~  239 (294)
                      +|+++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||++. +|||++|||++|||+|++|.++.++
T Consensus       264 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~  343 (393)
T 2nac_A          264 MINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQAR  343 (393)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHH
T ss_pred             HhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999864 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCC
Q 022672          240 MATLAALNVLGKIKGYPIWGNPNQVE  265 (294)
Q Consensus       240 ~~~~~~~nl~~~~~g~~~~~~~n~~~  265 (294)
                      +...+++|+++|++|+++.|.++.+.
T Consensus       344 ~~~~~~~nl~~~~~G~~~~~~~~~v~  369 (393)
T 2nac_A          344 YAAGTREILECFFEGRPIRDEYLIVQ  369 (393)
T ss_dssp             HHHHHHHHHHHHHHTCCCCGGGEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCcceeEecc
Confidence            99999999999999999988776543

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=8.8e-60  Score=442.34  Aligned_cols=248  Identities=25%  Similarity=0.302  Sum_probs=219.4

Q ss_pred             CccccCcccHHHHHhC--CcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEE
Q 022672            1 MAVGYNNVDVNAANKY--GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV   78 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~--gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGI   78 (294)
                      +|+|+||||+++|+++  ||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|.. ......+.+|+|+||||
T Consensus        91 ~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~-~~~~~~~~~l~g~tvgI  169 (364)
T 2j6i_A           91 AGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEV-AAIAKDAYDIEGKTIAT  169 (364)
T ss_dssp             SSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCH-HHHHTTCCCSTTCEEEE
T ss_pred             CCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCc-CcccCCcccCCCCEEEE
Confidence            5899999999999999  99999999999999999999999999999999999999998742 11112357899999999


Q ss_pred             EcCChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc
Q 022672           79 IGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  157 (294)
Q Consensus        79 IGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~  157 (294)
                      ||+|.||+++|++| ++|||+ |++||++.......  .       .     .+.....++++++++||+|++|+|++++
T Consensus       170 IG~G~IG~~vA~~l-~~~G~~~V~~~d~~~~~~~~~--~-------~-----~g~~~~~~l~ell~~aDvV~l~~P~t~~  234 (364)
T 2j6i_A          170 IGAGRIGYRVLERL-VPFNPKELLYYDYQALPKDAE--E-------K-----VGARRVENIEELVAQADIVTVNAPLHAG  234 (364)
T ss_dssp             ECCSHHHHHHHHHH-GGGCCSEEEEECSSCCCHHHH--H-------H-----TTEEECSSHHHHHHTCSEEEECCCCSTT
T ss_pred             ECcCHHHHHHHHHH-HhCCCcEEEEECCCccchhHH--H-------h-----cCcEecCCHHHHHhcCCEEEECCCCChH
Confidence            99999999999997 799997 99999876332110  0       0     1122345899999999999999999999


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCC--C---CeEEccCCCC
Q 022672          158 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEM--K---NAIVVPHIAS  231 (294)
Q Consensus       158 t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~--~---nviiTPHia~  231 (294)
                      |+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+|. +|||.+  |   ||++|||+|+
T Consensus       235 t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~  314 (364)
T 2j6i_A          235 TKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSG  314 (364)
T ss_dssp             TTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGG
T ss_pred             HHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCc
Confidence            999999999999999999999999999999999999999999999999999999875 799999  9   9999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 022672          232 ASKWTREGMATLAALNVLGKIKGYPIWGNPNQV  264 (294)
Q Consensus       232 ~t~~~~~~~~~~~~~nl~~~~~g~~~~~~~n~~  264 (294)
                      +|.++..++...+++|+.+|++|+++....|.+
T Consensus       315 ~t~e~~~~~~~~~~~nl~~~~~g~~~~~~~n~v  347 (364)
T 2j6i_A          315 TTLDAQTRYAQGTVNILESFFTGKFDYRPQDII  347 (364)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCCCCCCcee
Confidence            999999999999999999999999554555554

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.1e-59  Score=431.85  Aligned_cols=239  Identities=32%  Similarity=0.507  Sum_probs=212.7

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|||+||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|..   ....+.++.|+||||||
T Consensus        96 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~---~~~~~~~l~g~tvgIIG  172 (335)
T 2g76_A           96 AGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWER---KKFMGTELNGKTLGILG  172 (335)
T ss_dssp             SSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCT---GGGCBCCCTTCEEEEEC
T ss_pred             CCCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCc---cCCCCcCCCcCEEEEEe
Confidence            589999999999999999999999999999999999999999999999999999998752   22346799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|+++ ++||++|++||++......   .       ..+     .. ..++++++++||+|++|+|++++|++
T Consensus       173 lG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~---~-------~~g-----~~-~~~l~ell~~aDvV~l~~P~t~~t~~  235 (335)
T 2g76_A          173 LGRIGREVATRM-QSFGMKTIGYDPIISPEVS---A-------SFG-----VQ-QLPLEEIWPLCDFITVHTPLLPSTTG  235 (335)
T ss_dssp             CSHHHHHHHHHH-HTTTCEEEEECSSSCHHHH---H-------HTT-----CE-ECCHHHHGGGCSEEEECCCCCTTTTT
T ss_pred             ECHHHHHHHHHH-HHCCCEEEEECCCcchhhh---h-------hcC-----ce-eCCHHHHHhcCCEEEEecCCCHHHHH
Confidence            999999999997 7999999999998654211   0       011     11 24899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM  240 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~~~~~  240 (294)
                      +++++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||+.||.+++|||++|||++|||++++|.++.+++
T Consensus       236 li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~  315 (335)
T 2g76_A          236 LLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRC  315 (335)
T ss_dssp             SBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHH
T ss_pred             hhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999976789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCC
Q 022672          241 ATLAALNVLGKIKGYPIWG  259 (294)
Q Consensus       241 ~~~~~~nl~~~~~g~~~~~  259 (294)
                      .+.+++|+.+|++|+++.|
T Consensus       316 ~~~~~~nl~~~~~g~~~~n  334 (335)
T 2g76_A          316 GEEIAVQFVDMVKGKSLTG  334 (335)
T ss_dssp             HHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHcCCCCCC
Confidence            9999999999999998754

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=3.6e-58  Score=423.18  Aligned_cols=237  Identities=43%  Similarity=0.667  Sum_probs=218.9

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+||||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|..|.+....+.++.|+||||||
T Consensus        72 ~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG  151 (311)
T 2cuk_A           72 YSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVG  151 (311)
T ss_dssp             SSSCCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEEC
T ss_pred             CCcCccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999997664433456799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+.+|+++ ++||++|++||++....                 .   . ...++++++++||+|++|+|++++|++
T Consensus       152 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~-----------------~---~-~~~~l~ell~~aDvV~l~~p~~~~t~~  209 (311)
T 2cuk_A          152 MGRIGQAVAKRA-LAFGMRVVYHARTPKPL-----------------P---Y-PFLSLEELLKEADVVSLHTPLTPETHR  209 (311)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCSS-----------------S---S-CBCCHHHHHHHCSEEEECCCCCTTTTT
T ss_pred             ECHHHHHHHHHH-HHCCCEEEEECCCCccc-----------------c---c-ccCCHHHHHhhCCEEEEeCCCChHHHh
Confidence            999999999997 79999999999876431                 0   1 235899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC-CCCccCCCCeEEccCCCCCcHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREG  239 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~L~~~~nviiTPHia~~t~~~~~~  239 (294)
                      +++++.++.||+|++|||+|||+++|+++|.++|+ |+|+||+||||+.||++ ++|||++||+++|||++++|.++..+
T Consensus       210 li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~  288 (311)
T 2cuk_A          210 LLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRER  288 (311)
T ss_dssp             CBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHH
T ss_pred             hcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999 99999999999999975 48999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCC
Q 022672          240 MATLAALNVLGKIKGYPIWGN  260 (294)
Q Consensus       240 ~~~~~~~nl~~~~~g~~~~~~  260 (294)
                      +.+.+++|+.+|++|+++.+.
T Consensus       289 ~~~~~~~nl~~~~~g~~~~~~  309 (311)
T 2cuk_A          289 MAEVAVENLLAVLEGREPPNP  309 (311)
T ss_dssp             HHHHHHHHHHHHHTTCCCSSB
T ss_pred             HHHHHHHHHHHHHcCCCCCCc
Confidence            999999999999999987654

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=3.6e-58  Score=424.82  Aligned_cols=241  Identities=32%  Similarity=0.529  Sum_probs=218.8

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+||||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|..|.+....+.++.|+||||||
T Consensus        74 ~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG  153 (320)
T 1gdh_A           74 YSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYG  153 (320)
T ss_dssp             ESSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEEC
T ss_pred             CCcccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEEC
Confidence            48999999999999999999999999999999999999999999999999999999997665433457799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcC-CchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  159 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~  159 (294)
                      +|.||+++|+++ ++||++|++||+ +.......   .            .+.....++++++++||+|++|+|++++|+
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~~---~------------~g~~~~~~l~ell~~aDvVil~~p~~~~t~  217 (320)
T 1gdh_A          154 FGSIGQALAKRA-QGFDMDIDYFDTHRASSSDEA---S------------YQATFHDSLDSLLSVSQFFSLNAPSTPETR  217 (320)
T ss_dssp             CSHHHHHHHHHH-HTTTCEEEEECSSCCCHHHHH---H------------HTCEECSSHHHHHHHCSEEEECCCCCTTTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCCcChhhhh---h------------cCcEEcCCHHHHHhhCCEEEEeccCchHHH
Confidence            999999999997 799999999999 76542110   0            011223489999999999999999999999


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHH
Q 022672          160 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  239 (294)
Q Consensus       160 ~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~~~~  239 (294)
                      ++++++.++.||+|++|||+|||+++|+++|.++|++|+|.||+||||+.||.+++|||++|||++|||++++|.++.++
T Consensus       218 ~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~~~  297 (320)
T 1gdh_A          218 YFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQARED  297 (320)
T ss_dssp             TCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHHHH
T ss_pred             hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999995568999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCC
Q 022672          240 MATLAALNVLGKIKGYPIW  258 (294)
Q Consensus       240 ~~~~~~~nl~~~~~g~~~~  258 (294)
                      +...+ +|+.+|++|+++.
T Consensus       298 ~~~~~-~nl~~~~~g~~~~  315 (320)
T 1gdh_A          298 MAHQA-NDLIDALFGGADM  315 (320)
T ss_dssp             HHHHH-HHHHHHHHTTSCC
T ss_pred             HHHHH-HHHHHHHcCCCCc
Confidence            99999 9999999999864

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=1.1e-57  Score=425.39  Aligned_cols=248  Identities=32%  Similarity=0.460  Sum_probs=219.6

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCC---Ccc-cCcccCCCEE
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP---NLF-VGNLLKGQTV   76 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~---~~~-~g~~l~gktv   76 (294)
                      +|+|||+||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|.....   ... .+.+++|+||
T Consensus        92 ~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tv  171 (347)
T 1mx3_A           92 IGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETL  171 (347)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEE
T ss_pred             cccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEE
Confidence            489999999999999999999999999999999999999999999999999999999742100   001 1258999999


Q ss_pred             EEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCc
Q 022672           77 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  156 (294)
Q Consensus        77 GIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~  156 (294)
                      ||||+|.||+.+|++| ++|||+|++||++.......   .            .+.....++++++++||+|++|+|+++
T Consensus       172 GIIG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~------------~g~~~~~~l~ell~~aDvV~l~~P~t~  235 (347)
T 1mx3_A          172 GIIGLGRVGQAVALRA-KAFGFNVLFYDPYLSDGVER---A------------LGLQRVSTLQDLLFHSDCVTLHCGLNE  235 (347)
T ss_dssp             EEECCSHHHHHHHHHH-HTTTCEEEEECTTSCTTHHH---H------------HTCEECSSHHHHHHHCSEEEECCCCCT
T ss_pred             EEEeECHHHHHHHHHH-HHCCCEEEEECCCcchhhHh---h------------cCCeecCCHHHHHhcCCEEEEcCCCCH
Confidence            9999999999999997 79999999999876432111   0            111234589999999999999999999


Q ss_pred             cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC--CCCccCCCCeEEccCCCCCcH
Q 022672          157 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIASASK  234 (294)
Q Consensus       157 ~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~--~~~L~~~~nviiTPHia~~t~  234 (294)
                      +|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||+.||++  .+|||.+||+++|||++++|.
T Consensus       236 ~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~  315 (347)
T 1mx3_A          236 HNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSE  315 (347)
T ss_dssp             TCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCH
T ss_pred             HHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999986  378999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 022672          235 WTREGMATLAALNVLGKIKGYPIWGNPNQV  264 (294)
Q Consensus       235 ~~~~~~~~~~~~nl~~~~~g~~~~~~~n~~  264 (294)
                      ++.++|.+.+++|+.+|++|+++.+..|.|
T Consensus       316 ~~~~~~~~~~~~ni~~~~~g~~~~~l~~~v  345 (347)
T 1mx3_A          316 QASIEMREEAAREIRRAITGRIPDSLKNCV  345 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCTTTTCSSBC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcccCCCC
Confidence            999999999999999999999876555554

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=8.8e-58  Score=421.04  Aligned_cols=235  Identities=29%  Similarity=0.495  Sum_probs=216.6

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+|+||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|..     ..+.++.|+||||||
T Consensus        75 ~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~-----~~~~~l~g~~vgIIG  149 (313)
T 2ekl_A           75 AGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK-----IEGLELAGKTIGIVG  149 (313)
T ss_dssp             CSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC-----CCCCCCTTCEEEEES
T ss_pred             cCCCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC-----CCCCCCCCCEEEEEe
Confidence            589999999999999999999999999999999999999999999999999999998741     246789999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|+++ ++||++|++||++......   .       ..+     .. ..++++++++||+|++|+|++++|++
T Consensus       150 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~---~-------~~g-----~~-~~~l~ell~~aDvVvl~~P~~~~t~~  212 (313)
T 2ekl_A          150 FGRIGTKVGIIA-NAMGMKVLAYDILDIREKA---E-------KIN-----AK-AVSLEELLKNSDVISLHVTVSKDAKP  212 (313)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCHHHH---H-------HTT-----CE-ECCHHHHHHHCSEEEECCCCCTTSCC
T ss_pred             eCHHHHHHHHHH-HHCCCEEEEECCCcchhHH---H-------hcC-----ce-ecCHHHHHhhCCEEEEeccCChHHHH
Confidence            999999999997 7999999999998754211   0       011     11 24899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCC---CccCCCCeEEccCCCCCcHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP---GLSEMKNAIVVPHIASASKWTR  237 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~---~L~~~~nviiTPHia~~t~~~~  237 (294)
                      +++++.++.||+|++|||+|||+++|+++|.++|++|+++||+||||+.||++++   |||++|||++|||++++|.++.
T Consensus       213 li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~  292 (313)
T 2ekl_A          213 IIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQ  292 (313)
T ss_dssp             SBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHH
T ss_pred             hhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHH
Confidence            9999999999999999999999999999999999999999999999999999887   9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCC
Q 022672          238 EGMATLAALNVLGKIKGYPI  257 (294)
Q Consensus       238 ~~~~~~~~~nl~~~~~g~~~  257 (294)
                      +++.+.+++|+.+|++|+|+
T Consensus       293 ~~~~~~~~~n~~~~~~g~~l  312 (313)
T 2ekl_A          293 KRVAEMTTQNLLNAMKELGM  312 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999986

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=1.1e-57  Score=423.19  Aligned_cols=240  Identities=33%  Similarity=0.531  Sum_probs=221.0

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+||||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|. +. ....+.+++|++|||||
T Consensus        94 ~~~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~-~~~~~~~l~g~~vgIIG  171 (333)
T 3ba1_A           94 FSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK-FG-DFKLTTKFSGKRVGIIG  171 (333)
T ss_dssp             SSSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGG-GC-CCCCCCCCTTCCEEEEC
T ss_pred             cCccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCC-cc-ccccccccCCCEEEEEC
Confidence            58999999999999999999999999999999999999999999999999999999985 22 12346799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+.+|+++ ++||++|++||++....                   .+.....++++++++||+|++|+|++++|++
T Consensus       172 ~G~iG~~vA~~l-~~~G~~V~~~dr~~~~~-------------------~g~~~~~~l~ell~~aDvVil~vP~~~~t~~  231 (333)
T 3ba1_A          172 LGRIGLAVAERA-EAFDCPISYFSRSKKPN-------------------TNYTYYGSVVELASNSDILVVACPLTPETTH  231 (333)
T ss_dssp             CSHHHHHHHHHH-HTTTCCEEEECSSCCTT-------------------CCSEEESCHHHHHHTCSEEEECSCCCGGGTT
T ss_pred             CCHHHHHHHHHH-HHCCCEEEEECCCchhc-------------------cCceecCCHHHHHhcCCEEEEecCCChHHHH
Confidence            999999999997 79999999999876431                   0122346899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM  240 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~~~~~  240 (294)
                      +++++.++.||+|++|||++||.++|+++|.++|++|+++||+||||+.||++.+|||++|||++|||++++|.++.+++
T Consensus       232 li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~  311 (333)
T 3ba1_A          232 IINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVM  311 (333)
T ss_dssp             CBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHHH
T ss_pred             HhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCC
Q 022672          241 ATLAALNVLGKIKGYPIWGNPN  262 (294)
Q Consensus       241 ~~~~~~nl~~~~~g~~~~~~~n  262 (294)
                      .+.+++|+.+|++|+++.+.+|
T Consensus       312 ~~~~~~nl~~~~~g~~~~~~Vn  333 (333)
T 3ba1_A          312 ADLVVGNLEAHFSGKPLLTPVV  333 (333)
T ss_dssp             HHHHHHHHHHHHHTCCCSSBCC
T ss_pred             HHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999877664

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.2e-57  Score=416.24  Aligned_cols=234  Identities=40%  Similarity=0.624  Sum_probs=213.6

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|||+||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|..   ....+.++.|+||||||
T Consensus        73 ~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~---~~~~~~~l~g~~vgIiG  149 (307)
T 1wwk_A           73 AGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAK---KEAMGIELEGKTIGIIG  149 (307)
T ss_dssp             SSSCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCT---TTCCBCCCTTCEEEEEC
T ss_pred             CCccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCc---cCcCCcccCCceEEEEc
Confidence            589999999999999999999999999999999999999999999999999999998753   22346799999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|+++ ++||++|++||++......   .       ..+     .. ..++++++++||+|++|+|++++|++
T Consensus       150 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~---~-------~~g-----~~-~~~l~ell~~aDvV~l~~p~~~~t~~  212 (307)
T 1wwk_A          150 FGRIGYQVAKIA-NALGMNILLYDPYPNEERA---K-------EVN-----GK-FVDLETLLKESDVVTIHVPLVESTYH  212 (307)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCHHHH---H-------HTT-----CE-ECCHHHHHHHCSEEEECCCCSTTTTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCCChhhH---h-------hcC-----cc-ccCHHHHHhhCCEEEEecCCChHHhh
Confidence            999999999997 7999999999998754211   0       011     11 24899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC-CCCccCCCCeEEccCCCCCcHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREG  239 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~L~~~~nviiTPHia~~t~~~~~~  239 (294)
                      +++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||+.||++ ++|||++||+++|||++++|.++..+
T Consensus       213 li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~  292 (307)
T 1wwk_A          213 LINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQER  292 (307)
T ss_dssp             CBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHH
T ss_pred             hcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999985 58999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 022672          240 MATLAALNVLGKIKG  254 (294)
Q Consensus       240 ~~~~~~~nl~~~~~g  254 (294)
                      +.+.+++|+.+|++|
T Consensus       293 ~~~~~~~nl~~~~~g  307 (307)
T 1wwk_A          293 AGVEVAEKVVKILKG  307 (307)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999999976

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=3e-57  Score=415.53  Aligned_cols=237  Identities=24%  Similarity=0.373  Sum_probs=216.8

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+|+||++++ ++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|..+.    .+.++.|+||||||
T Consensus        57 ~~~G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~----~~~~l~g~~vgIIG  131 (303)
T 1qp8_A           57 VTAGLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV----EIPLIQGEKVAVLG  131 (303)
T ss_dssp             SSSCCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS----CCCCCTTCEEEEES
T ss_pred             CCcCcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC----CCCCCCCCEEEEEc
Confidence            5899999999985 799999999999999999999999999999999999999999975421    23489999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|++| ++||++|++||++.. . .                  +.....++++++++||+|++|+|++++|++
T Consensus       132 ~G~IG~~~A~~l-~~~G~~V~~~dr~~~-~-~------------------~~~~~~~l~ell~~aDvV~l~~P~~~~t~~  190 (303)
T 1qp8_A          132 LGEIGTRVGKIL-AALGAQVRGFSRTPK-E-G------------------PWRFTNSLEEALREARAAVCALPLNKHTRG  190 (303)
T ss_dssp             CSTHHHHHHHHH-HHTTCEEEEECSSCC-C-S------------------SSCCBSCSHHHHTTCSEEEECCCCSTTTTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcc-c-c------------------CcccCCCHHHHHhhCCEEEEeCcCchHHHH
Confidence            999999999997 799999999998754 1 0                  112346899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCC-CCCCCC-CCCccCCCCeEEccCCCCC--cHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF-EDEPYM-KPGLSEMKNAIVVPHIASA--SKWT  236 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~-~~EP~~-~~~L~~~~nviiTPHia~~--t~~~  236 (294)
                      +++++.|+.||+|++|||+|||+++|+++|.++|++|+|+||+|||| ++||++ ++|||++||+++|||++++  |.++
T Consensus       191 ~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~  270 (303)
T 1qp8_A          191 LVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERV  270 (303)
T ss_dssp             CBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHH
T ss_pred             HhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999 889987 4799999999999999998  9999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          237 REGMATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       237 ~~~~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      ++++.+.+++|+.+|++|+++.+.+|.
T Consensus       271 ~~~~~~~~~~nl~~~~~g~~~~~~v~~  297 (303)
T 1qp8_A          271 WRQMVMEAVRNLITYATGGRPRNIAKR  297 (303)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSCBCCG
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCceeCH
Confidence            999999999999999999998877764

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=2.5e-57  Score=413.03  Aligned_cols=229  Identities=28%  Similarity=0.393  Sum_probs=206.4

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|||+||+++|++++|.++| +|.++.+||||+++++|++.|+++.+++.+++|.|... +    ..+|+|+||||||
T Consensus        56 ~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~-~----~~~l~g~tvGIIG  129 (290)
T 3gvx_A           56 ISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQS-P----TTLLYGKALGILG  129 (290)
T ss_dssp             CSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-C----CCCCTTCEEEEEC
T ss_pred             HhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccC-C----ceeeecchheeec
Confidence            5899999999999997766655 58899999999999999999999999999999997532 1    2689999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|++| ++|||+|++||++.....                 .  .....++++++++||+|++|+|+|++|++
T Consensus       130 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~-----------------~--~~~~~~l~ell~~aDiV~l~~P~t~~t~~  189 (290)
T 3gvx_A          130 YGGIGRRVAHLA-KAFGMRVIAYTRSSVDQN-----------------V--DVISESPADLFRQSDFVLIAIPLTDKTRG  189 (290)
T ss_dssp             CSHHHHHHHHHH-HHHTCEEEEECSSCCCTT-----------------C--SEECSSHHHHHHHCSEEEECCCCCTTTTT
T ss_pred             cCchhHHHHHHH-HhhCcEEEEEeccccccc-----------------c--ccccCChHHHhhccCeEEEEeeccccchh
Confidence            999999999997 799999999998764310                 0  12346899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCC-CCcHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA-SASKWTREG  239 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia-~~t~~~~~~  239 (294)
                      +++++.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||+  +|||++|||++|||+| ++|.++.++
T Consensus       190 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~pL~~~~nvilTPHiag~~t~e~~~~  267 (290)
T 3gvx_A          190 MVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE--ITETNLRNAILSPHVAGGMSGEIMDI  267 (290)
T ss_dssp             CBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS--CCSCCCSSEEECCSCSSCBTTBCCHH
T ss_pred             hhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc--cchhhhhhhhcCccccCCccchHHHH
Confidence            9999999999999999999999999999999999999999999999999998  8999999999999999 899999999


Q ss_pred             HHHHHHHHHHHHHcCCCC
Q 022672          240 MATLAALNVLGKIKGYPI  257 (294)
Q Consensus       240 ~~~~~~~nl~~~~~g~~~  257 (294)
                      +.+.+++|+.+|++|+.-
T Consensus       268 ~~~~~~~ni~~~~~~~~~  285 (290)
T 3gvx_A          268 AIQLAFENVRNFFEGEGH  285 (290)
T ss_dssp             HHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHhhhcCCCc
Confidence            999999999999999853

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=1.8e-56  Score=417.84  Aligned_cols=248  Identities=29%  Similarity=0.382  Sum_probs=220.3

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCC---CCCCCC-CcccCcccCCCEE
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL---YDGWLP-NLFVGNLLKGQTV   76 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~---~~~w~~-~~~~g~~l~gktv   76 (294)
                      +|+||||||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.   |..+.. ....+.+|+|+||
T Consensus        87 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~~~l~g~~v  166 (348)
T 2w2k_A           87 AGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVL  166 (348)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTCCCSTTCEE
T ss_pred             CCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccCcCCCCCEE
Confidence            589999999999999999999999999999999999999999999999999999998   731110 0124678999999


Q ss_pred             EEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCC
Q 022672           77 GVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  155 (294)
Q Consensus        77 GIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt  155 (294)
                      ||||+|.||+.+|+++ + +||++|++||++....... ..             .+.....++++++++||+|++|+|++
T Consensus       167 gIIG~G~IG~~vA~~l-~~~~G~~V~~~d~~~~~~~~~-~~-------------~g~~~~~~l~ell~~aDvVil~vp~~  231 (348)
T 2w2k_A          167 GAVGLGAIQKEIARKA-VHGLGMKLVYYDVAPADAETE-KA-------------LGAERVDSLEELARRSDCVSVSVPYM  231 (348)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCCEEEEECSSCCCHHHH-HH-------------HTCEECSSHHHHHHHCSEEEECCCCS
T ss_pred             EEEEECHHHHHHHHHH-HHhcCCEEEEECCCCcchhhH-hh-------------cCcEEeCCHHHHhccCCEEEEeCCCC
Confidence            9999999999999997 7 9999999999876432111 00             01122358999999999999999999


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHH
Q 022672          156 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKW  235 (294)
Q Consensus       156 ~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~  235 (294)
                      ++|+++++++.++.||+|++|||+|||+++|+++|.++|++|++.||++|||++||.+.+|||++|||++|||+++.|.+
T Consensus       232 ~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e  311 (348)
T 2w2k_A          232 KLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIE  311 (348)
T ss_dssp             GGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHH
T ss_pred             hHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999555789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          236 TREGMATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       236 ~~~~~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      +..++...+++|+.+|++|+++.+.+|.
T Consensus       312 ~~~~~~~~~~~ni~~~~~g~~~~~~v~~  339 (348)
T 2w2k_A          312 TFHEFERLTMTNIDRFLLQGKPLLTPAG  339 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCSSBCS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceecc
Confidence            9999999999999999999988877765

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=1.5e-55  Score=409.05  Aligned_cols=246  Identities=37%  Similarity=0.511  Sum_probs=222.6

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|||+||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|..|.+....|.++.|++|||||
T Consensus        83 ~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG  162 (330)
T 2gcg_A           83 MSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIG  162 (330)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEEC
T ss_pred             CCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEEC
Confidence            58999999999999999999999999999999999999999999999999999999997775444457899999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+.+|+++ +++|++|++||++..... .. .       .     .+... .++++++++||+|++|+|++++|++
T Consensus       163 ~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~-~~-~-------~-----~g~~~-~~l~e~l~~aDvVi~~vp~~~~t~~  226 (330)
T 2gcg_A          163 LGRIGQAIARRL-KPFGVQRFLYTGRQPRPE-EA-A-------E-----FQAEF-VSTPELAAQSDFIVVACSLTPATEG  226 (330)
T ss_dssp             CSHHHHHHHHHH-GGGTCCEEEEESSSCCHH-HH-H-------T-----TTCEE-CCHHHHHHHCSEEEECCCCCTTTTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCCcchh-HH-H-------h-----cCcee-CCHHHHHhhCCEEEEeCCCChHHHH
Confidence            999999999997 699999999998764321 10 0       0     11222 3899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCCCcHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG  239 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~~t~~~~~~  239 (294)
                      +++++.++.||+|++|||+|||+++|+++|.++|++|++.||++|||++||++. +|||++|||++|||+|+.|.++.++
T Consensus       227 ~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~~~~  306 (330)
T 2gcg_A          227 LCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNT  306 (330)
T ss_dssp             CBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHHHHH
T ss_pred             hhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999764 7999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCC
Q 022672          240 MATLAALNVLGKIKGYPIWGNPN  262 (294)
Q Consensus       240 ~~~~~~~nl~~~~~g~~~~~~~n  262 (294)
                      +...+++|+.+|++|+++.+.+|
T Consensus       307 ~~~~~~~n~~~~~~g~~~~~~v~  329 (330)
T 2gcg_A          307 MSLLAANNLLAGLRGEPMPSELK  329 (330)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTEEC
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999877665

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.7e-55  Score=409.06  Aligned_cols=244  Identities=32%  Similarity=0.521  Sum_probs=220.5

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccC----cccCCCEE
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQTV   76 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g----~~l~gktv   76 (294)
                      +|+|||+||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|..|.. ...|    .+|.|+||
T Consensus        71 ~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~~~~~~l~g~~v  149 (333)
T 2d0i_A           71 HSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAK-IWTGFKRIESLYGKKV  149 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHH-HHTTSCCCCCSTTCEE
T ss_pred             CCcccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcc-cccCCcccCCCCcCEE
Confidence            489999999999999999999999999999999999999999999999999999999865421 1235    68999999


Q ss_pred             EEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCc
Q 022672           77 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  156 (294)
Q Consensus        77 GIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~  156 (294)
                      ||||+|.||+.+|+++ +++|++|++||++......   ...            +.. ..++++++++||+|++|+|+++
T Consensus       150 gIIG~G~iG~~vA~~l-~~~G~~V~~~d~~~~~~~~---~~~------------g~~-~~~l~e~l~~aDiVil~vp~~~  212 (333)
T 2d0i_A          150 GILGMGAIGKAIARRL-IPFGVKLYYWSRHRKVNVE---KEL------------KAR-YMDIDELLEKSDIVILALPLTR  212 (333)
T ss_dssp             EEECCSHHHHHHHHHH-GGGTCEEEEECSSCCHHHH---HHH------------TEE-ECCHHHHHHHCSEEEECCCCCT
T ss_pred             EEEccCHHHHHHHHHH-HHCCCEEEEECCCcchhhh---hhc------------Cce-ecCHHHHHhhCCEEEEcCCCCh
Confidence            9999999999999997 7999999999998754111   000            112 2489999999999999999999


Q ss_pred             cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCC-CeEEccCCCCCcHH
Q 022672          157 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK-NAIVVPHIASASKW  235 (294)
Q Consensus       157 ~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~-nviiTPHia~~t~~  235 (294)
                      +|+++++++.++.||+| +|||+|||.++|+++|.++|++|+++||++|||++||++++|||++| ||++|||+++.|.+
T Consensus       213 ~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~  291 (333)
T 2d0i_A          213 DTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALE  291 (333)
T ss_dssp             TTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHH
T ss_pred             HHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHH
Confidence            99999999999999999 99999999999999999999999999999999999998878999999 99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 022672          236 TREGMATLAALNVLGKIKGYPIWGNPNQ  263 (294)
Q Consensus       236 ~~~~~~~~~~~nl~~~~~g~~~~~~~n~  263 (294)
                      +..++.+.+++|+.+|++|+++.+.+|.
T Consensus       292 ~~~~~~~~~~~n~~~~~~g~~~~~~v~~  319 (333)
T 2d0i_A          292 AQEDVGFRAVENLLKVLRGEVPEDLVNK  319 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTBSCT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcCccCH
Confidence            9999999999999999999998877764

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=3.8e-55  Score=406.92  Aligned_cols=245  Identities=44%  Similarity=0.693  Sum_probs=221.8

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCC----CCCCCcccCcccCCCEE
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTV   76 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~----~w~~~~~~g~~l~gktv   76 (294)
                      +|+|||+||+++|+++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|.    .|.+....+.++.|++|
T Consensus        74 ~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~v  153 (334)
T 2dbq_A           74 YAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTI  153 (334)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEE
T ss_pred             CCcccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEE
Confidence            48999999999999999999999999999999999999999999999999999999986    56443345679999999


Q ss_pred             EEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCc
Q 022672           77 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  156 (294)
Q Consensus        77 GIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~  156 (294)
                      ||||+|.||+.+|++| +++|++|++||++....  .. ..+       +     .. ..++++++++||+|++|+|+++
T Consensus       154 gIIG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~--~~-~~~-------g-----~~-~~~l~~~l~~aDvVil~vp~~~  216 (334)
T 2dbq_A          154 GIIGLGRIGQAIAKRA-KGFNMRILYYSRTRKEE--VE-REL-------N-----AE-FKPLEDLLRESDFVVLAVPLTR  216 (334)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECSSCCHH--HH-HHH-------C-----CE-ECCHHHHHHHCSEEEECCCCCT
T ss_pred             EEEccCHHHHHHHHHH-HhCCCEEEEECCCcchh--hH-hhc-------C-----cc-cCCHHHHHhhCCEEEECCCCCh
Confidence            9999999999999997 69999999999987541  11 000       1     11 2589999999999999999999


Q ss_pred             cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHH
Q 022672          157 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT  236 (294)
Q Consensus       157 ~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~  236 (294)
                      +|+++++++.++.||+|++|||+|||.++|+++|.++|++|++.||++|||++||.+.+|||++|||++|||+++.|.++
T Consensus       217 ~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~  296 (334)
T 2dbq_A          217 ETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGA  296 (334)
T ss_dssp             TTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHH
T ss_pred             HHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999994457999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Q 022672          237 REGMATLAALNVLGKIKGYPIWGNPN  262 (294)
Q Consensus       237 ~~~~~~~~~~nl~~~~~g~~~~~~~n  262 (294)
                      .+++...+++|+.+|++|+++.+.+|
T Consensus       297 ~~~~~~~~~~n~~~~~~g~~~~~~v~  322 (334)
T 2dbq_A          297 REGMAELVAKNLIAFKRGEIPPTLVN  322 (334)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTBSC
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccccC
Confidence            99999999999999999999877766

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=5.5e-54  Score=421.15  Aligned_cols=269  Identities=33%  Similarity=0.441  Sum_probs=240.2

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|+++++++.+++|.|.+   ..+.|.+|+|+||||||
T Consensus        73 ~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~---~~~~~~~l~g~~vgIIG  149 (529)
T 1ygy_A           73 AGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKR---SSFSGTEIFGKTVGVVG  149 (529)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCG---GGCCBCCCTTCEEEEEC
T ss_pred             CCcCcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcc---cCcCccccCCCEEEEEe
Confidence            589999999999999999999999999999999999999999999999999999998753   23457899999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+++|++| +++|++|++||++....  ...        ..+     ... .++++++++||+|++|+|++++|++
T Consensus       150 ~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~--~a~--------~~g-----~~~-~~l~e~~~~aDvV~l~~P~~~~t~~  212 (529)
T 1ygy_A          150 LGRIGQLVAQRI-AAFGAYVVAYDPYVSPA--RAA--------QLG-----IEL-LSLDDLLARADFISVHLPKTPETAG  212 (529)
T ss_dssp             CSHHHHHHHHHH-HTTTCEEEEECTTSCHH--HHH--------HHT-----CEE-CCHHHHHHHCSEEEECCCCSTTTTT
T ss_pred             eCHHHHHHHHHH-HhCCCEEEEECCCCChh--HHH--------hcC-----cEE-cCHHHHHhcCCEEEECCCCchHHHH
Confidence            999999999997 79999999999976421  110        001     122 3899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHH
Q 022672          161 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM  240 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~~~~~  240 (294)
                      +++++.++.||+|+++||++||+++|+++|+++|++|+++||++|||+.||.+++|||++||+++|||+++.|.++.+++
T Consensus       213 ~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~  292 (529)
T 1ygy_A          213 LIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRA  292 (529)
T ss_dssp             CBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHH
T ss_pred             HhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCCccCCCCCCCCCCchhhhHHHhccccccC
Q 022672          241 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL  294 (294)
Q Consensus       241 ~~~~~~nl~~~~~g~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (294)
                      ...+++|+.+|+.|++..+.+|...     +...+...|++.+++++|.++.|+
T Consensus       293 ~~~~~~~l~~~l~~~~~~~~v~~~~-----~~~hd~i~P~l~La~~lg~~~~ql  341 (529)
T 1ygy_A          293 GTDVAESVRLALAGEFVPDAVNVGG-----GVVNEEVAPWLDLVRKLGVLAGVL  341 (529)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCSCCS-----TTSCTTTTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCcccCCcc-----cccchhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999877776521     455667779999999999877664

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=4.4e-55  Score=410.17  Aligned_cols=217  Identities=30%  Similarity=0.396  Sum_probs=198.3

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|+.                     |.+|+||||||||
T Consensus        68 ~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~---------------------g~~l~gktvGIIG  126 (381)
T 3oet_A           68 ATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD---------------------GFSLRDRTIGIVG  126 (381)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT---------------------TCCGGGCEEEEEC
T ss_pred             ccccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc---------------------CCccCCCEEEEEe
Confidence            4899999999999999999999999999999999999999999852                     2479999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc---
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT---  157 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~---  157 (294)
                      +|.||+++|++| ++|||+|++||++....               . .   .....++++++++||+|++|+|+|++   
T Consensus       127 lG~IG~~vA~~l-~a~G~~V~~~d~~~~~~---------------~-~---~~~~~sl~ell~~aDiV~l~~Plt~~g~~  186 (381)
T 3oet_A          127 VGNVGSRLQTRL-EALGIRTLLCDPPRAAR---------------G-D---EGDFRTLDELVQEADVLTFHTPLYKDGPY  186 (381)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECHHHHHT---------------T-C---CSCBCCHHHHHHHCSEEEECCCCCCSSTT
T ss_pred             ECHHHHHHHHHH-HHCCCEEEEECCChHHh---------------c-c---CcccCCHHHHHhhCCEEEEcCcCCccccc
Confidence            999999999997 79999999999753221               0 0   11346899999999999999999999   


Q ss_pred             -ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHH
Q 022672          158 -TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT  236 (294)
Q Consensus       158 -t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~  236 (294)
                       |+++++++.|+.||+|++|||+|||++||++||+++|++|++.||+||||++||+++++||.++ +++|||+||+|.++
T Consensus       187 ~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~e~  265 (381)
T 3oet_A          187 KTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTLEG  265 (381)
T ss_dssp             CCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCHHH
T ss_pred             cchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcHHH
Confidence             9999999999999999999999999999999999999999999999999999999888899875 89999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCC
Q 022672          237 REGMATLAALNVLGKIKGYPIWG  259 (294)
Q Consensus       237 ~~~~~~~~~~nl~~~~~g~~~~~  259 (294)
                      ..++..++++|+.+|+.+.+-..
T Consensus       266 ~~~~~~~~~~~l~~~l~~~~~~~  288 (381)
T 3oet_A          266 KARGTTQVFEAYSAFIGREQRVA  288 (381)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHcCCcccc
Confidence            99999999999999998876433

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=4.3e-53  Score=397.42  Aligned_cols=219  Identities=30%  Similarity=0.390  Sum_probs=199.7

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      +|+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|+.                     +.++.|+||||||
T Consensus        65 ~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~---------------------~~~l~g~tvGIIG  123 (380)
T 2o4c_A           65 CTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR---------------------GADLAERTYGVVG  123 (380)
T ss_dssp             CSSCSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH---------------------TCCGGGCEEEEEC
T ss_pred             cCcccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh---------------------hcccCCCEEEEEe
Confidence            4899999999999999999999999999999999999999999852                     2479999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc---
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT---  157 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~---  157 (294)
                      +|.||+++|++| ++||++|++||++....             ..+     . ...++++++++||+|++|+|++++   
T Consensus       124 lG~IG~~vA~~l-~~~G~~V~~~d~~~~~~-------------~~g-----~-~~~~l~ell~~aDvV~l~~Plt~~g~~  183 (380)
T 2o4c_A          124 AGQVGGRLVEVL-RGLGWKVLVCDPPRQAR-------------EPD-----G-EFVSLERLLAEADVISLHTPLNRDGEH  183 (380)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECHHHHHH-------------STT-----S-CCCCHHHHHHHCSEEEECCCCCSSSSS
T ss_pred             CCHHHHHHHHHH-HHCCCEEEEEcCChhhh-------------ccC-----c-ccCCHHHHHHhCCEEEEeccCcccccc
Confidence            999999999997 79999999999754321             001     1 236899999999999999999999   


Q ss_pred             -ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcHHH
Q 022672          158 -TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT  236 (294)
Q Consensus       158 -t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~~~  236 (294)
                       |+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.+|+||||++||+++++||. +||++|||+||+|.++
T Consensus       184 ~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~-~nvi~TPHiag~t~e~  262 (380)
T 2o4c_A          184 PTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEG  262 (380)
T ss_dssp             CCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHT-TCSEECSSCTTCCHHH
T ss_pred             chhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhcc-CCEEEccccCcCCHHH
Confidence             99999999999999999999999999999999999999999999999999999988888887 5999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCC
Q 022672          237 REGMATLAALNVLGKIKGYPIWGNP  261 (294)
Q Consensus       237 ~~~~~~~~~~nl~~~~~g~~~~~~~  261 (294)
                      ..++...+++|+.+|++|++..+..
T Consensus       263 ~~~~~~~~~~nl~~~l~g~~~~~~~  287 (380)
T 2o4c_A          263 KLRGTAQIYQAYCAWRGIAERVSLQ  287 (380)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCGG
T ss_pred             HHHHHHHHHHHHHHHHcCCCccchh
Confidence            9999999999999999999865543

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=4.2e-38  Score=303.65  Aligned_cols=221  Identities=14%  Similarity=0.164  Sum_probs=181.7

Q ss_pred             ccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC
Q 022672            2 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA   81 (294)
Q Consensus         2 g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl   81 (294)
                      ++|+|++  ++++++||.|+|+++++. +|||+.+       |++....+.+++| |   .+  ..+.++.||||||||+
T Consensus       222 ~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l~-------r~~~~~~~~l~~g-w---~~--~~g~~L~GktVgIIG~  285 (494)
T 3d64_A          222 TTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSKF-------DNLYGCRESLVDG-I---KR--ATDVMIAGKIAVVAGY  285 (494)
T ss_dssp             HHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHHH-------HHHHHHHTTHHHH-H---HH--HHCCCCTTCEEEEECC
T ss_pred             ccCHhhH--HHHHHCCCEEEECCCccH-HHHHHHH-------hhhHhhhhhhhhh-h---hh--ccccccCCCEEEEEcc
Confidence            6899988  889999999999999999 9999543       6665555555554 3   22  3467899999999999


Q ss_pred             ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcccccc
Q 022672           82 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  161 (294)
Q Consensus        82 G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~l  161 (294)
                      |.||+.+|+++ ++||++|++||+++....+..         .     .+. ...++++++++||+|++|+    .|+++
T Consensus       286 G~IG~~vA~~l-~~~G~~V~v~d~~~~~~~~a~---------~-----~G~-~~~~l~ell~~aDiVi~~~----~t~~l  345 (494)
T 3d64_A          286 GDVGKGCAQSL-RGLGATVWVTEIDPICALQAA---------M-----EGY-RVVTMEYAADKADIFVTAT----GNYHV  345 (494)
T ss_dssp             SHHHHHHHHHH-HTTTCEEEEECSCHHHHHHHH---------T-----TTC-EECCHHHHTTTCSEEEECS----SSSCS
T ss_pred             CHHHHHHHHHH-HHCCCEEEEEeCChHhHHHHH---------H-----cCC-EeCCHHHHHhcCCEEEECC----Ccccc
Confidence            99999999997 799999999999875432211         0     011 2358999999999999997    58999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCcceEEeeCCCCCCCCC-CCccCC--CCeEEccCCC-CCcHH-
Q 022672          162 INKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEM--KNAIVVPHIA-SASKW-  235 (294)
Q Consensus       162 i~~~~l~~mk~gailIN~aRG~~-vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~--~nviiTPHia-~~t~~-  235 (294)
                      |+++.|+.||+|++|||+|||++ ||+++| ++|++|+|+    |+++.||+++ +|||.+  |||++| |+| +.+.+ 
T Consensus       346 I~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~----~~~Dv~plp~~~pL~~l~~~nvv~t-H~atg~~~~~  419 (494)
T 3d64_A          346 INHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK----PQVDHIIFPDGKRVILLAEGRLVNL-GCATGHPSFV  419 (494)
T ss_dssp             BCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE----TTEEEEECTTSCEEEEEGGGSBHHH-HTSCCSCHHH
T ss_pred             cCHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc----eeEEEEECCCCCchhhcCCCCEEEE-eCcCCCCHHH
Confidence            99999999999999999999999 699999 999999987    4555557754 789998  999999 999 66644 


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 022672          236 TREGMATLAALNVLGKIKGYPIWGNPNQV  264 (294)
Q Consensus       236 ~~~~~~~~~~~nl~~~~~g~~~~~~~n~~  264 (294)
                      +..++..++++|+..|++|+++.+.++.+
T Consensus       420 ~~~~~a~~~~~ni~~~~~g~~~~n~V~~l  448 (494)
T 3d64_A          420 MSNSFTNQTLAQIELFTRGGEYANKVYVL  448 (494)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGSCSSEEEC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCceeeC
Confidence            67888999999999999999887766543

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=1.5e-37  Score=298.86  Aligned_cols=223  Identities=12%  Similarity=0.101  Sum_probs=188.3

Q ss_pred             ccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC
Q 022672            2 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA   81 (294)
Q Consensus         2 g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl   81 (294)
                      ++|+|++  ++++++||.++|+++++. +|||       ++.|++....+.+++| |.+     ..+.++.||||||||+
T Consensus       202 ~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r-----~~~~~l~GktVgIIG~  265 (479)
T 1v8b_A          202 TTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR-----ATDFLISGKIVVICGY  265 (479)
T ss_dssp             HHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH-----HHCCCCTTSEEEEECC
T ss_pred             CccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh-----ccccccCCCEEEEEee
Confidence            6899988  899999999999999999 9999       3458888888888877 532     2456899999999999


Q ss_pred             ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcccccc
Q 022672           82 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  161 (294)
Q Consensus        82 G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~l  161 (294)
                      |.||+.+|+++ ++||++|++||++........         .     .++ ...++++++++||+|++|+    .|+++
T Consensus       266 G~IG~~vA~~l-~~~G~~Viv~d~~~~~~~~a~---------~-----~g~-~~~~l~ell~~aDiVi~~~----~t~~l  325 (479)
T 1v8b_A          266 GDVGKGCASSM-KGLGARVYITEIDPICAIQAV---------M-----EGF-NVVTLDEIVDKGDFFITCT----GNVDV  325 (479)
T ss_dssp             SHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHH---------T-----TTC-EECCHHHHTTTCSEEEECC----SSSSS
T ss_pred             CHHHHHHHHHH-HhCcCEEEEEeCChhhHHHHH---------H-----cCC-EecCHHHHHhcCCEEEECC----Chhhh
Confidence            99999999997 799999999999875432211         0     111 2358999999999999995    68999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH--HHHcCCcceEEeeCCCCCCCCCCCccCC--CCeEEccCCC-CCcHH
Q 022672          162 INKERLATMKKEAILVNCSRGPV-IDEVALVE--HLKQNPMFRVGLDVFEDEPYMKPGLSEM--KNAIVVPHIA-SASKW  235 (294)
Q Consensus       162 i~~~~l~~mk~gailIN~aRG~~-vd~~aL~~--aL~~g~i~ga~lDV~~~EP~~~~~L~~~--~nviiTPHia-~~t~~  235 (294)
                      |+++.|+.||+|++|||+|||++ ||+++|.+  +|++|+|+ +++|||+.++  .+|||.+  ||+++| |+| +.+.+
T Consensus       326 I~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp~--~~~l~~l~~~nvv~t-H~atghp~e  401 (479)
T 1v8b_A          326 IKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLPN--GNKIIVLARGRLLNL-GCATGHPAF  401 (479)
T ss_dssp             BCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECTT--SCEEEEEGGGSBHHH-HSSCCSCHH
T ss_pred             cCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECCC--CCeeeEecCCCEEEE-eccCCCCch
Confidence            99999999999999999999999 99999999  99999998 8999984322  4789988  999999 999 66755


Q ss_pred             -HHHHHHHHHHHHHHHHHcCC--CCCCCCCCC
Q 022672          236 -TREGMATLAALNVLGKIKGY--PIWGNPNQV  264 (294)
Q Consensus       236 -~~~~~~~~~~~nl~~~~~g~--~~~~~~n~~  264 (294)
                       +...+..++++|+..|++|+  ++.|.++.+
T Consensus       402 ~~~~s~a~~~~~ni~~~~~g~~~~l~n~V~~l  433 (479)
T 1v8b_A          402 VMSFSFCNQTFAQLDLWQNKDTNKYENKVYLL  433 (479)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSSSCCSSEECC
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCcCCcceEeC
Confidence             67788899999999999999  887766544

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.93  E-value=1e-26  Score=224.86  Aligned_cols=220  Identities=15%  Similarity=0.102  Sum_probs=170.6

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      .|+|+|++  .++.++||.++|+++++. +|||+.       .|++....+.+..+    |.+  ..+..+.|++|+|+|
T Consensus       218 tgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s~~~g----~~r--~~~~~l~GktV~IiG  281 (494)
T 3ce6_A          218 TTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHSLIDG----INR--GTDALIGGKKVLICG  281 (494)
T ss_dssp             SHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHHHHHH----HHH--HHCCCCTTCEEEEEC
T ss_pred             eCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------HhhhhhhhhhhhHH----HHh--ccCCCCCcCEEEEEc
Confidence            37899998  788999999999999999 999953       34444333333332    321  123468999999999


Q ss_pred             CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccc
Q 022672           81 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  160 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~  160 (294)
                      +|.||+.+|+++ +++|++|+++|+++......         ...+     .. ..+++++++++|+|+.|++    +.+
T Consensus       282 ~G~IG~~~A~~l-ka~Ga~Viv~d~~~~~~~~A---------~~~G-----a~-~~~l~e~l~~aDvVi~atg----t~~  341 (494)
T 3ce6_A          282 YGDVGKGCAEAM-KGQGARVSVTEIDPINALQA---------MMEG-----FD-VVTVEEAIGDADIVVTATG----NKD  341 (494)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH---------HHTT-----CE-ECCHHHHGGGCSEEEECSS----SSC
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH---------HHcC-----CE-EecHHHHHhCCCEEEECCC----CHH
Confidence            999999999996 79999999999987543211         1111     11 2478899999999999975    566


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH-HHHcCCcceEEeeCCCCCCCCCCC--ccCCCCeE----EccCCCCC
Q 022672          161 LINKERLATMKKEAILVNCSRGPV-IDEVALVE-HLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAI----VVPHIASA  232 (294)
Q Consensus       161 li~~~~l~~mk~gailIN~aRG~~-vd~~aL~~-aL~~g~i~ga~lDV~~~EP~~~~~--L~~~~nvi----iTPHia~~  232 (294)
                      +++++.++.||+|+++||++|++. +|+++|.. +|+++++. +++|+++.++. .++  |+..+|++    +|||+++.
T Consensus       342 ~i~~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~-~~~l~LL~~grlvnL~~~TPH~a~~  419 (494)
T 3ce6_A          342 IIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT-GRSIIVLSEGRLLNLGNATGHPSFV  419 (494)
T ss_dssp             SBCHHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT-CCEEEEEGGGSCHHHHHSCCSCHHH
T ss_pred             HHHHHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc-chHHHHHhCCCEEeccCCCCCcccc
Confidence            888899999999999999999999 99999988 88888887 56799876442 333  66778898    99999987


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 022672          233 SKWTREGMATLAALNVLGKIKGYPIWGNP  261 (294)
Q Consensus       233 t~~~~~~~~~~~~~nl~~~~~g~~~~~~~  261 (294)
                      +.++   +...+.+++..+.+|+++.+.+
T Consensus       420 ~~~s---~~~qa~~ai~~~~~g~~~~~~V  445 (494)
T 3ce6_A          420 MSNS---FANQTIAQIELWTKNDEYDNEV  445 (494)
T ss_dssp             HHHH---HHHHHHHHHHHHHTGGGCCSSE
T ss_pred             chHH---HHHHHHHHHHHHHcCCCCCCEE
Confidence            7654   4778899999999998765543

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.90  E-value=1.3e-23  Score=191.27  Aligned_cols=141  Identities=18%  Similarity=0.168  Sum_probs=116.8

Q ss_pred             ccccCcccH-HHHHhCCcEEEeCC------CCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCC
Q 022672            2 AVGYNNVDV-NAANKYGIAVGNTP------GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ   74 (294)
Q Consensus         2 g~G~d~id~-~~~~~~gI~v~n~~------~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gk   74 (294)
                      ++|+|++|+ ++|+++||.|+|+|      ++++.+|||++++++|..                        .+.++.|+
T Consensus       101 ~~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~------------------------~~~~l~g~  156 (293)
T 3d4o_A          101 YSGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH------------------------TDFTIHGA  156 (293)
T ss_dssp             EESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH------------------------CSSCSTTC
T ss_pred             EecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh------------------------cCCCCCCC
Confidence            479999998 99999999999998      899999999999998863                        12479999


Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  154 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl  154 (294)
                      ||||||+|.||+.+|+++ ++||++|++||++..... ...        ..+   .......++++++++||+|++|+|+
T Consensus       157 ~v~IiG~G~iG~~~a~~l-~~~G~~V~~~dr~~~~~~-~~~--------~~g---~~~~~~~~l~~~l~~aDvVi~~~p~  223 (293)
T 3d4o_A          157 NVAVLGLGRVGMSVARKF-AALGAKVKVGARESDLLA-RIA--------EMG---MEPFHISKAAQELRDVDVCINTIPA  223 (293)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHHH-HHH--------HTT---SEEEEGGGHHHHTTTCSEEEECCSS
T ss_pred             EEEEEeeCHHHHHHHHHH-HhCCCEEEEEECCHHHHH-HHH--------HCC---CeecChhhHHHHhcCCCEEEECCCh
Confidence            999999999999999997 799999999999875421 110        111   1111125789999999999999994


Q ss_pred             CccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          155 DKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       155 t~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                           ++++++.++.||+++++||++||..
T Consensus       224 -----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          224 -----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             -----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             -----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence                 7889999999999999999999764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.85  E-value=1e-20  Score=178.08  Aligned_cols=226  Identities=17%  Similarity=0.155  Sum_probs=156.3

Q ss_pred             cccCcccHHHHHhCCcEEE----------eCCCCCcchHHHHHHHHHHHHh-cCchHHHHHHHcCCCCCCCCCcccCccc
Q 022672            3 VGYNNVDVNAANKYGIAVG----------NTPGVLTETTAELAASLSLAAA-RRIVEADEFMRAGLYDGWLPNLFVGNLL   71 (294)
Q Consensus         3 ~G~d~id~~~~~~~gI~v~----------n~~~~~~~~vAE~~l~~~L~~~-R~~~~~~~~~~~~~~~~w~~~~~~g~~l   71 (294)
                      .++|...++++.++||++.          |.|.++  ++||++..+++.+. |++.    ..+.|+|. |...   ..++
T Consensus        97 ~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s--~~ae~ag~~a~~~a~r~l~----~~~~g~~~-~~~~---~~~l  166 (377)
T 2vhw_A           97 LAASRACTDALLDSGTTSIAYETVQTADGALPLLA--PMSEVAGRLAAQVGAYHLM----RTQGGRGV-LMGG---VPGV  166 (377)
T ss_dssp             GGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTH--HHHHHHHHHHHHHHHHHTS----GGGTSCCC-CTTC---BTTB
T ss_pred             ccCCHHHHHHHHHcCCeEEEeeeccccCCCccccC--chHHHHHHHHHHHHHHHHH----HhcCCCcc-cccC---CCCC
Confidence            4578888999999999997          555544  66699985554444 6663    23445543 2221   1369


Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC-ccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .|++|+|+|+|.||+.+|+.+ +++|++|+++|++.... +...+.+       +... .......+++++++++|+|+.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a-~~~Ga~V~~~d~~~~~l-~~~~~~~-------g~~~~~~~~~~~~l~~~l~~aDvVi~  237 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIA-NGMGATVTVLDINIDKL-RQLDAEF-------CGRIHTRYSSAYELEGAVKRADLVIG  237 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHT-------TTSSEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHHhc-------CCeeEeccCCHHHHHHHHcCCCEEEE
Confidence            999999999999999999996 79999999999986542 2111111       1100 000112367888999999999


Q ss_pred             cc--CCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCC-CCCC-CCCccCCCCeE--
Q 022672          151 HP--VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED-EPYM-KPGLSEMKNAI--  224 (294)
Q Consensus       151 ~~--Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~-EP~~-~~~L~~~~nvi--  224 (294)
                      ++  |.+ ++.++++++.++.||+|+++||++..             .|.       ||+. ||.+ ++|+|..+||+  
T Consensus       238 ~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~-------------~Gg-------v~e~~ep~~~~~~~~~~~~v~i~  296 (377)
T 2vhw_A          238 AVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAID-------------QGG-------CFEGSRPTTYDHPTFAVHDTLFY  296 (377)
T ss_dssp             CCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGG-------------TTC-------SBTTCCCBCSSSCEEEETTEEEE
T ss_pred             CCCcCCC-CCcceecHHHHhcCCCCcEEEEEecC-------------CCC-------ccccccCCCCCCCEEEECCEEEE
Confidence            76  554 78899999999999999999999831             121       7887 8875 46899999999  


Q ss_pred             EccCCCCCcHHHH---------HHHHHHHHHHHH-HHHcCCCCCCCCCCCCCcc
Q 022672          225 VVPHIASASKWTR---------EGMATLAALNVL-GKIKGYPIWGNPNQVEPFL  268 (294)
Q Consensus       225 iTPHia~~t~~~~---------~~~~~~~~~nl~-~~~~g~~~~~~~n~~~~~~  268 (294)
                      +|||+++.+..+.         ..+.+.+.++.. .+.+++++.+.+|.-...+
T Consensus       297 ~~phl~~~~~~~as~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~v~~~~G~i  350 (377)
T 2vhw_A          297 CVANMPASVPKTSTYALTNATMPYVLELADHGWRAACRSNPALAKGLSTHEGAL  350 (377)
T ss_dssp             CBTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTEEEETTEE
T ss_pred             ecCCcchhhHHHHHHHHHHHHHHHHHHHHhCChhhhhhcChHHhCcEEeeCCEE
Confidence            9999999876521         333344445543 5566777777666544333

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.84  E-value=2.3e-22  Score=190.98  Aligned_cols=154  Identities=20%  Similarity=0.246  Sum_probs=123.4

Q ss_pred             Ccc-cCCCEEEEEcCChHHHHHHHHHhhc-CCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           68 GNL-LKGQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        68 g~~-l~gktvGIIGlG~IG~~vA~~L~~~-~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      |.+ |+||||||+|+|+||+.+|++| ++ |||+|++++......       +            ... -.+++++++.+
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l-~~~~G~kVv~~sD~~g~~-------~------------~~~-gvdl~~L~~~~  264 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIM-SEDFGMKVVAVSDSKGGI-------Y------------NPD-GLNADEVLKWK  264 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECSSCEE-------E------------EEE-EECHHHHHHHH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHH-HHhcCCEEEEEeCCCccc-------c------------Ccc-CCCHHHHHHHH
Confidence            456 9999999999999999999997 68 999999994322110       0            000 12577777655


Q ss_pred             CE-EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC--CCccCCCC
Q 022672          146 DV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKN  222 (294)
Q Consensus       146 Di-V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~--~~L~~~~n  222 (294)
                      |. .++ +|+ ++|++ ++.+.|..||+ .+|||++||.+||+++ +++|+++.|.+++     +||++.  ++||.++|
T Consensus       265 d~~~~l-~~l-~~t~~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~  334 (419)
T 1gtm_A          265 NEHGSV-KDF-PGATN-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKG  334 (419)
T ss_dssp             HHHSSS-TTC-TTSEE-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTT
T ss_pred             HhcCEe-ecC-ccCee-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCC
Confidence            54 233 576 67888 89999999998 5999999999999999 6999999999987     899863  58999999


Q ss_pred             eEEccCC----C-----------------CCcHHHHHHHHHHHHHHHHHHH
Q 022672          223 AIVVPHI----A-----------------SASKWTREGMATLAALNVLGKI  252 (294)
Q Consensus       223 viiTPHi----a-----------------~~t~~~~~~~~~~~~~nl~~~~  252 (294)
                      |++|||+    |                 |.+.+..+++.+.+.+|+.+++
T Consensus       335 V~itPhiaaNaGGvt~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~  385 (419)
T 1gtm_A          335 ILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVY  385 (419)
T ss_dssp             CEEECHHHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECchhhhCCcceeeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999    5                 5567788888888889988887

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.83  E-value=1.2e-20  Score=172.24  Aligned_cols=146  Identities=17%  Similarity=0.166  Sum_probs=110.4

Q ss_pred             cccCccc-HHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC
Q 022672            3 VGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA   81 (294)
Q Consensus         3 ~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl   81 (294)
                      +|+|++| +++|+++||.|+|.|+++  ++         ++.|+++.+.     |.|.. . ....+.++.|+|+||||+
T Consensus       104 ~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~~-----g~~~~-~-~~~~~~~l~g~~v~IiG~  165 (300)
T 2rir_A          104 SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTVE-----GTIML-A-IQHTDYTIHGSQVAVLGL  165 (300)
T ss_dssp             ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHHH-----HHHHH-H-HHTCSSCSTTSEEEEECC
T ss_pred             EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHHH-----HHHHH-H-HHhcCCCCCCCEEEEEcc
Confidence            7999999 999999999999999974  33         2345554432     23310 0 012356899999999999


Q ss_pred             ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcccccc
Q 022672           82 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  161 (294)
Q Consensus        82 G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~l  161 (294)
                      |.||+.+|++| ++||++|++||++.... +...        ..+   .......++++++++||+|++|+|+     ++
T Consensus       166 G~iG~~~a~~l-~~~G~~V~~~d~~~~~~-~~~~--------~~g---~~~~~~~~l~~~l~~aDvVi~~~p~-----~~  227 (300)
T 2rir_A          166 GRTGMTIARTF-AALGANVKVGARSSAHL-ARIT--------EMG---LVPFHTDELKEHVKDIDICINTIPS-----MI  227 (300)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHH--------HTT---CEEEEGGGHHHHSTTCSEEEECCSS-----CC
T ss_pred             cHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHH--------HCC---CeEEchhhHHHHhhCCCEEEECCCh-----hh
Confidence            99999999997 79999999999987532 1111        111   1111235799999999999999995     68


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcc
Q 022672          162 INKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       162 i~~~~l~~mk~gailIN~aRG~~  184 (294)
                      ++++.++.||+++++||++||+.
T Consensus       228 i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          228 LNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             BCHHHHTTSCTTCEEEECSSTTC
T ss_pred             hCHHHHHhCCCCCEEEEEeCCCC
Confidence            89999999999999999999864

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.76  E-value=3.9e-18  Score=161.56  Aligned_cols=147  Identities=20%  Similarity=0.278  Sum_probs=109.2

Q ss_pred             HHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHH
Q 022672           10 VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA   89 (294)
Q Consensus        10 ~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA   89 (294)
                      +....+.+|+|.|++........+...+..-++...+      .+.           .+.++.||+|||+|+|.||+.+|
T Consensus       165 ~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi------~ra-----------tg~~L~GktVgIiG~G~IG~~vA  227 (436)
T 3h9u_A          165 RLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGI------KRA-----------TDVMIAGKTACVCGYGDVGKGCA  227 (436)
T ss_dssp             HHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHH------HHH-----------HCCCCTTCEEEEECCSHHHHHHH
T ss_pred             HHHcCCCCCceEeechhhhhhhhhccccchHHHHHHH------HHh-----------cCCcccCCEEEEEeeCHHHHHHH
Confidence            4456789999999986544443333333222222211      111           13579999999999999999999


Q ss_pred             HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhc
Q 022672           90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  169 (294)
Q Consensus        90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~  169 (294)
                      ++| ++||++|+++|+++.........         +     . ...++++++++||+|++    ++.|.++|+++.|+.
T Consensus       228 ~~L-ka~Ga~Viv~D~~p~~a~~A~~~---------G-----~-~~~sL~eal~~ADVVil----t~gt~~iI~~e~l~~  287 (436)
T 3h9u_A          228 AAL-RGFGARVVVTEVDPINALQAAME---------G-----Y-QVLLVEDVVEEAHIFVT----TTGNDDIITSEHFPR  287 (436)
T ss_dssp             HHH-HHTTCEEEEECSCHHHHHHHHHT---------T-----C-EECCHHHHTTTCSEEEE----CSSCSCSBCTTTGGG
T ss_pred             HHH-HHCCCEEEEECCChhhhHHHHHh---------C-----C-eecCHHHHHhhCCEEEE----CCCCcCccCHHHHhh
Confidence            997 79999999999986543221111         1     1 23589999999999996    356899999999999


Q ss_pred             CCCCcEEEEcCCCcc-cCHHHHHHH
Q 022672          170 MKKEAILVNCSRGPV-IDEVALVEH  193 (294)
Q Consensus       170 mk~gailIN~aRG~~-vd~~aL~~a  193 (294)
                      ||+|++|||+|||.+ ||.++|.+.
T Consensus       288 MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          288 MRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             CCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             cCCCcEEEEeCCCCCccCHHHHHhh
Confidence            999999999999998 999999764

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.72  E-value=1.3e-17  Score=156.36  Aligned_cols=227  Identities=14%  Similarity=0.171  Sum_probs=141.8

Q ss_pred             ccccCcccHHHHHhCCcEEE---eCCCC-Cc----chHHHHHH--HHHHHHhcCchHHHHHHHcCCCCCCCCCcccCccc
Q 022672            2 AVGYNNVDVNAANKYGIAVG---NTPGV-LT----ETTAELAA--SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLL   71 (294)
Q Consensus         2 g~G~d~id~~~~~~~gI~v~---n~~~~-~~----~~vAE~~l--~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l   71 (294)
                      ..+.|..+++++.++||++.   +.+.. ..    .++++.+-  +.++++.+ +....    .|+ ..|...   ..++
T Consensus        94 ~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a~~~-l~~~~----~g~-~~~~~~---~~~l  164 (369)
T 2eez_A           94 HLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVGAQF-LEKPK----GGR-GVLLGG---VPGV  164 (369)
T ss_dssp             CGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHHHHH-TSGGG----TSC-CCCTTC---BTBB
T ss_pred             cccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHHHHH-HHHhc----CCC-ceecCC---CCCC
Confidence            35678889999999999997   44432 12    45555444  33333322 22221    121 112111   1369


Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC-ccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .+++|+|+|.|.||+.+|+.+ +++|++|+++|++.... +.....+       +... .......+++++++++|+|+.
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l-~~~Ga~V~~~d~~~~~~-~~~~~~~-------g~~~~~~~~~~~~l~~~~~~~DvVi~  235 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIA-LGMGAQVTILDVNHKRL-QYLDDVF-------GGRVITLTATEANIKKSVQHADLLIG  235 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHT-------TTSEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHhc-------CceEEEecCCHHHHHHHHhCCCEEEE
Confidence            999999999999999999996 79999999999986532 2111111       1100 000112467788999999999


Q ss_pred             ccCCCc-cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC-CCCccCCCCeE----
Q 022672          151 HPVLDK-TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAI----  224 (294)
Q Consensus       151 ~~Plt~-~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~L~~~~nvi----  224 (294)
                      |++.+. .+..++.++.++.||+|+++||++-.             .|   |+ +|++  ||.+ ++|++..+|++    
T Consensus       236 ~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v  296 (369)
T 2eez_A          236 AVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVVHYGV  296 (369)
T ss_dssp             CCC-------CCSCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECC
T ss_pred             CCCCCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEEEEee
Confidence            998765 57788899999999999999999721             22   44 9998  6654 46788899999    


Q ss_pred             -----EccCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 022672          225 -----VVPHIASA--SKWTREGMATLAALNVLGKIKGYPIWGNPNQVE  265 (294)
Q Consensus       225 -----iTPHia~~--t~~~~~~~~~~~~~nl~~~~~g~~~~~~~n~~~  265 (294)
                           +|||+++.  +......+.+.+.+++..++.++++.+.+|.-+
T Consensus       297 ~~lp~~~p~~as~~~~~~~~~~l~~l~~~g~~~~~~~~~l~~~~~~~~  344 (369)
T 2eez_A          297 ANMPGAVPRTSTFALTNQTLPYVLKLAEKGLDALLEDAALLKGLNTHK  344 (369)
T ss_dssp             SCSGGGSHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCHHHHTTEEEET
T ss_pred             CCcchhcHHHHHHHHHHHHHHHHHHHHhcChhhhhcChHHhcCEEeeC
Confidence                 88998874  566778888888889888888887776665543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.71  E-value=2.3e-17  Score=156.26  Aligned_cols=105  Identities=18%  Similarity=0.262  Sum_probs=87.5

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      +.++.|||+||+|+|.||+.+|+++ ++|||+|+++|+.+.........              ++ ...++++++++||+
T Consensus       242 g~~L~GKTVgVIG~G~IGr~vA~~l-rafGa~Viv~d~dp~~a~~A~~~--------------G~-~vv~LeElL~~ADI  305 (464)
T 3n58_A          242 DVMMAGKVAVVCGYGDVGKGSAQSL-AGAGARVKVTEVDPICALQAAMD--------------GF-EVVTLDDAASTADI  305 (464)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHHHHHHHT--------------TC-EECCHHHHGGGCSE
T ss_pred             CCcccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEeCCcchhhHHHhc--------------Cc-eeccHHHHHhhCCE
Confidence            4689999999999999999999996 89999999999876432221111              11 23589999999999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  192 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~~  192 (294)
                      |+++.    .|+++|+++.|+.||+|++|||+|||++ ||.++|.+
T Consensus       306 Vv~at----gt~~lI~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          306 VVTTT----GNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             EEECC----SSSSSBCHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             EEECC----CCccccCHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            99864    4789999999999999999999999998 99998864

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.69  E-value=2.8e-18  Score=162.74  Aligned_cols=206  Identities=14%  Similarity=0.193  Sum_probs=149.3

Q ss_pred             ccccCcccHHHHH-----hCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCC----cccC---c
Q 022672            2 AVGYNNVDVNAAN-----KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN----LFVG---N   69 (294)
Q Consensus         2 g~G~d~id~~~~~-----~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~----~~~g---~   69 (294)
                      |+|+|++++.++.     ++++.+++.+|. ..+++++.+..++.+.|++....... .+.   |...    ....   .
T Consensus        89 ~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~---~s~a~~av~~a~~~~~  163 (404)
T 1gpj_A           89 ASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRIS-EGA---VSIGSAAVELAERELG  163 (404)
T ss_dssp             HTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSSTT-CSC---CSHHHHHHHHHHHHHS
T ss_pred             ccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhhc-CCC---ccHHHHHHHHHHHHhc
Confidence            7899999999888     889999999998 57899999999999999875543222 222   3210    0001   1


Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ++.|++|+|||+|.||+.+++.| +.+|+ +|+++|++.... +.+...+       +..   .....++++++.++|+|
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~l~~~l~~aDvV  231 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYERA-VELARDL-------GGE---AVRFDELVDHLARSDVV  231 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHHH-HHHHHHH-------TCE---ECCGGGHHHHHHTCSEE
T ss_pred             cccCCEEEEEChHHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCc---eecHHhHHHHhcCCCEE
Confidence            47899999999999999999997 68999 999999986542 1111111       111   11124688889999999


Q ss_pred             EEccCCCccccccccHHHHhc--CC----CCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC-CCCccCCC
Q 022672          149 SLHPVLDKTTYHLINKERLAT--MK----KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMK  221 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~--mk----~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~L~~~~  221 (294)
                      +.|+|.   +..+++++.++.  ||    ++.++||++                             +|.+ +++++++|
T Consensus       232 i~at~~---~~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~  279 (404)
T 1gpj_A          232 VSATAA---PHPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIE  279 (404)
T ss_dssp             EECCSS---SSCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGST
T ss_pred             EEccCC---CCceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccC
Confidence            999873   456677777776  42    456666664                             3653 57899999


Q ss_pred             CeEE--ccCCCCCcHHHHH----------HHHHHHHHHHHHHHcCCC
Q 022672          222 NAIV--VPHIASASKWTRE----------GMATLAALNVLGKIKGYP  256 (294)
Q Consensus       222 nvii--TPHia~~t~~~~~----------~~~~~~~~nl~~~~~g~~  256 (294)
                      ||++  +||+++.+.++.+          .+....++++..|+.+++
T Consensus       280 ~v~l~d~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~  326 (404)
T 1gpj_A          280 DVEVRTIDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLK  326 (404)
T ss_dssp             TEEEEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEeHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999  9999988876543          566777888888887654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.65  E-value=5.9e-16  Score=146.34  Aligned_cols=104  Identities=21%  Similarity=0.390  Sum_probs=85.9

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      +..+.||+++|+|+|.||+.+|++| ++||++|+++|+++.........         +     + ...+++++++++|+
T Consensus       215 ~~~L~GktV~ViG~G~IGk~vA~~L-ra~Ga~Viv~D~dp~ra~~A~~~---------G-----~-~v~~Leeal~~ADI  278 (435)
T 3gvp_A          215 DMMFGGKQVVVCGYGEVGKGCCAAL-KAMGSIVYVTEIDPICALQACMD---------G-----F-RLVKLNEVIRQVDI  278 (435)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHT---------T-----C-EECCHHHHTTTCSE
T ss_pred             CceecCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEeCChhhhHHHHHc---------C-----C-EeccHHHHHhcCCE
Confidence            3579999999999999999999997 79999999999876432221111         1     1 23589999999999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALV  191 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~  191 (294)
                      |++|    +.|.++|+++.|+.||+|++|||+|||++ +|.++|.
T Consensus       279 Vi~a----tgt~~lI~~e~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          279 VITC----TGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             EEEC----SSCSCSBCHHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             EEEC----CCCcccCCHHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            9995    46889999999999999999999999998 8877763

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.63  E-value=1.8e-16  Score=150.23  Aligned_cols=176  Identities=15%  Similarity=0.148  Sum_probs=111.3

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHH---HHHhcCchHHHHHHHcCCC--CCCCCCc--ccCcccCC
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLS---LAAARRIVEADEFMRAGLY--DGWLPNL--FVGNLLKG   73 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~---L~~~R~~~~~~~~~~~~~~--~~w~~~~--~~g~~l~g   73 (294)
                      ++.|+|++|++++.++||++.+.     +.|+|++.++.   |+....+.. ...++.+.|  .+|....  ..| ++.|
T Consensus       100 ~~~~~d~~~~~al~~~gI~v~~~-----e~v~~~~~a~~l~~l~~~a~~ag-~~av~~~~~~~~~~~~~~~~~~g-~l~g  172 (401)
T 1x13_A          100 IWPAQNPELMQKLAERNVTVMAM-----DSVPRISRAQSLDALSSMANIAG-YRAIVEAAHEFGRFFTGQITAAG-KVPP  172 (401)
T ss_dssp             CCGGGCHHHHHHHHHTTCEEEEG-----GGCCCSGGGGGGCHHHHHHHHHH-HHHHHHHHHHCSSCSSCEEETTE-EECC
T ss_pred             ecCCCCHHHHHHHHHCCCEEEEe-----ehhhhhhhhcccchHHHHHHHHH-HHHHHHHHHhcccccCCceeecc-CcCC
Confidence            36789999999999999999653     44455444442   222222221 223333322  2221110  012 5889


Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcC-----CCCcccc----------ccCCH
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-----EQPVTWK----------RASSM  138 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----------~~~~l  138 (294)
                      ++|+|+|+|.||..+++.+ +++|++|+++|++..... .. ...+.......     ...-++.          ...++
T Consensus       173 ~~V~ViGaG~iG~~aa~~a-~~~Ga~V~v~D~~~~~~~-~~-~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVKE-QV-QSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCGGGHH-HH-HHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHH-HH-HHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            9999999999999999986 799999999999875421 11 11110000000     0000000          00147


Q ss_pred             HHHhhcCCEEEEc--cCCCccccccccHHHHhcCCCCcEEEEcC--CCcccCH
Q 022672          139 DEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDE  187 (294)
Q Consensus       139 ~ell~~aDiV~l~--~Plt~~t~~li~~~~l~~mk~gailIN~a--RG~~vd~  187 (294)
                      +++++++|+|+.|  +|. ..+..+++++.++.||+|+++||+|  ||+.+++
T Consensus       250 ~e~~~~aDvVI~~~~~pg-~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          250 AAQAKEVDIIVTTALIPG-KPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             HHHHHHCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             HHHhCCCCEEEECCccCC-CCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            7889999999999  553 3467889999999999999999999  8876654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.51  E-value=5.4e-14  Score=132.38  Aligned_cols=177  Identities=15%  Similarity=0.167  Sum_probs=105.8

Q ss_pred             ccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCC--CCCCCcccC-cccCCCEEEE
Q 022672            2 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD--GWLPNLFVG-NLLKGQTVGV   78 (294)
Q Consensus         2 g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~--~w~~~~~~g-~~l~gktvGI   78 (294)
                      ..+.|+.+++++.++||++++. ....+.+++..+. +|+..+.+ ..+..+..+.|.  +|.+....+ .++.|++|+|
T Consensus       101 ~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~~~~~~~~l~g~~V~V  177 (384)
T 1l7d_A          101 GALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV  177 (384)
T ss_dssp             CGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEE
T ss_pred             cccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccchhccCCCCCCCEEEE
Confidence            4577899999999999999984 2222212222222 22222222 122233333221  121111111 3689999999


Q ss_pred             EcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhh---hc----CCCCcccccc----------CCHHHH
Q 022672           79 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---AN----GEQPVTWKRA----------SSMDEV  141 (294)
Q Consensus        79 IGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~----------~~l~el  141 (294)
                      +|+|.||+.+++.+ +++|++|+++|++..... ... .++....   ..    ....-++...          ..++++
T Consensus       178 iGaG~iG~~aa~~a-~~~Ga~V~~~d~~~~~~~-~~~-~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~  254 (384)
T 1l7d_A          178 FGVGVAGLQAIATA-KRLGAVVMATDVRAATKE-QVE-SLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKE  254 (384)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSCSTTHH-HHH-HTTCEECCC-----------------------CCHHHHHHHH
T ss_pred             ECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HHH-HcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHHHH
Confidence            99999999999986 799999999998865321 111 1111000   00    0000000000          117788


Q ss_pred             hhcCCEEEEcc--CCCccccccccHHHHhcCCCCcEEEEcC--CCccc
Q 022672          142 LREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVI  185 (294)
Q Consensus       142 l~~aDiV~l~~--Plt~~t~~li~~~~l~~mk~gailIN~a--RG~~v  185 (294)
                      ++++|+|+.|+  |.. .+.++++++.++.||+|+++||++  ||+.+
T Consensus       255 ~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~~gg~~  301 (384)
T 1l7d_A          255 LVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAGGNC  301 (384)
T ss_dssp             HTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             hCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecCCCCCe
Confidence            99999999888  433 356788999999999999999998  76543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.40  E-value=3.9e-13  Score=122.75  Aligned_cols=118  Identities=11%  Similarity=0.057  Sum_probs=91.4

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .+...-++|||||+|.||+.+|+.| ...|++|++||++.... +.+.        ..     +.....++++++++||+
T Consensus        16 ~~~~~m~~I~iIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~-~~l~--------~~-----g~~~~~~~~~~~~~aDv   80 (310)
T 3doj_A           16 PRGSHMMEVGFLGLGIMGKAMSMNL-LKNGFKVTVWNRTLSKC-DELV--------EH-----GASVCESPAEVIKKCKY   80 (310)
T ss_dssp             --CCCSCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGG-HHHH--------HT-----TCEECSSHHHHHHHCSE
T ss_pred             cccccCCEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHH--------HC-----CCeEcCCHHHHHHhCCE
Confidence            3456668999999999999999998 57899999999987543 2211        11     12345789999999999


Q ss_pred             EEEccCCCccccccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          148 ISLHPVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       148 V~l~~Plt~~t~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      |++|+|....++.++  .++.+..+++|.++||+++........+.+.+.+..+.
T Consensus        81 vi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           81 TIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             EEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            999999655666655  24566789999999999999998888999888776543

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.39  E-value=4.4e-13  Score=122.19  Aligned_cols=116  Identities=20%  Similarity=0.226  Sum_probs=93.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      |+|||||+|.||..+|++| ...|.+|++||+++... +.+.        ..     +.....++.|+++.||+|++|+|
T Consensus         4 ~kIgfIGlG~MG~~mA~~L-~~~G~~v~v~dr~~~~~-~~l~--------~~-----Ga~~a~s~~e~~~~~dvv~~~l~   68 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNL-LKAGYLLNVFDLVQSAV-DGLV--------AA-----GASAARSARDAVQGADVVISMLP   68 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSSHHHH-HHHH--------HT-----TCEECSSHHHHHTTCSEEEECCS
T ss_pred             CEEEEeeehHHHHHHHHHH-HhCCCeEEEEcCCHHHH-HHHH--------Hc-----CCEEcCCHHHHHhcCCceeecCC
Confidence            5899999999999999998 47899999999987653 2221        11     23456799999999999999999


Q ss_pred             CCcccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeC
Q 022672          154 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  206 (294)
Q Consensus       154 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV  206 (294)
                      ..++.+.++.  ...++.+++|.++||++..+.-+...+.+.+++..+.  .+|.
T Consensus        69 ~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa  121 (300)
T 3obb_A           69 ASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  121 (300)
T ss_dssp             CHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             chHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence            8887777763  3477889999999999999999999999999987654  4563

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.37  E-value=3e-12  Score=117.04  Aligned_cols=144  Identities=13%  Similarity=0.017  Sum_probs=90.1

Q ss_pred             HHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCc-hhHHHHHHhhhhhhhhhcCCC
Q 022672           51 EFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQ  128 (294)
Q Consensus        51 ~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~  128 (294)
                      +.++.+.|.+|.+... ......++|||||+|.||..+|+.| ...|. +|++||++. ....+.+.        ..   
T Consensus         3 ~~~~~~~~~~~~~~~~-~~~~~~~~I~iIG~G~mG~~~A~~L-~~~G~~~V~~~dr~~~~~~~~~~~--------~~---   69 (312)
T 3qsg_A            3 HHHHHSSGVDLGTENL-YFQSNAMKLGFIGFGEAASAIASGL-RQAGAIDMAAYDAASAESWRPRAE--------EL---   69 (312)
T ss_dssp             -----------------------CEEEEECCSHHHHHHHHHH-HHHSCCEEEEECSSCHHHHHHHHH--------HT---
T ss_pred             cccccccccccCcccc-cccCCCCEEEEECccHHHHHHHHHH-HHCCCCeEEEEcCCCCHHHHHHHH--------HC---
Confidence            4566777766654432 2234567999999999999999998 46788 999999973 33222211        11   


Q ss_pred             CccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee--C
Q 022672          129 PVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD--V  206 (294)
Q Consensus       129 ~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD--V  206 (294)
                        +.....++++++++||+|++|+|...... .+ ++....++++.++||+++.......++.+.+.+..+....+|  |
T Consensus        70 --g~~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv  145 (312)
T 3qsg_A           70 --GVSCKASVAEVAGECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAV  145 (312)
T ss_dssp             --TCEECSCHHHHHHHCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             --CCEEeCCHHHHHhcCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence              12345789999999999999999654433 33 667788999999999999999999999988876522223344  4


Q ss_pred             CCCCC
Q 022672          207 FEDEP  211 (294)
Q Consensus       207 ~~~EP  211 (294)
                      +..+|
T Consensus       146 ~g~~~  150 (312)
T 3qsg_A          146 MSAVK  150 (312)
T ss_dssp             CSCST
T ss_pred             cCCch
Confidence            55433

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.35  E-value=8.9e-13  Score=119.93  Aligned_cols=113  Identities=12%  Similarity=0.124  Sum_probs=89.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||..+|++| ...|++|++||+++.... .        +.     ..+.....++.|+++.||+|++|+|
T Consensus         6 ~kIgfIGLG~MG~~mA~~L-~~~G~~V~v~dr~~~~~~-~--------l~-----~~G~~~~~s~~e~~~~~dvvi~~l~   70 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEIL-LEAGYELVVWNRTASKAE-P--------LT-----KLGATVVENAIDAITPGGIVFSVLA   70 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEC-------C-T--------TT-----TTTCEECSSGGGGCCTTCEEEECCS
T ss_pred             CcEEEEecHHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-H--------HH-----HcCCeEeCCHHHHHhcCCceeeecc
Confidence            5799999999999999998 478999999998875421 1        11     1233456789999999999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  201 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g  201 (294)
                      ..+....++..+.+..++++.++|+++....-+...+.+.+++..+..
T Consensus        71 ~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~  118 (297)
T 4gbj_A           71 DDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHY  118 (297)
T ss_dssp             SHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             chhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCce
Confidence            777777788888899999999999999999999999999998876653

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.35  E-value=1.1e-12  Score=119.62  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=91.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ++..++|||||+|.||+.+|+.| ...|++|++||+++... +.+.        ..+     .....++++++++||+|+
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~-~~~~--------~~g-----~~~~~~~~e~~~~aDvVi   70 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVL-LKQGKRVAIWNRSPGKA-AALV--------AAG-----AHLCESVKAALSASPATI   70 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHH-HHHH--------HHT-----CEECSSHHHHHHHSSEEE
T ss_pred             ccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHH--------HCC-----CeecCCHHHHHhcCCEEE
Confidence            56678999999999999999998 57899999999987543 2211        111     234578999999999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +|+|....++.++..+.+..+++|.++||+++....+...+.+.+++..+.
T Consensus        71 ~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~  121 (306)
T 3l6d_A           71 FVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH  121 (306)
T ss_dssp             ECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE
T ss_pred             EEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            999976667777753345667899999999999999999999999876544

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.34  E-value=9.8e-12  Score=113.89  Aligned_cols=144  Identities=17%  Similarity=0.111  Sum_probs=96.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-HhhcCC
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREAD  146 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aD  146 (294)
                      ++.-++|||||+|.||+++|+.| +..|.  +|++||++..... ..        ...+..   .....++++ ++++||
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l-~~~G~~~~V~~~dr~~~~~~-~a--------~~~G~~---~~~~~~~~~~~~~~aD   96 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESIS-KA--------VDLGII---DEGTTSIAKVEDFSPD   96 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHH-HH--------HHTTSC---SEEESCTTGGGGGCCS
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCCCEEEEEECCHHHHH-HH--------HHCCCc---chhcCCHHHHhhccCC
Confidence            34458999999999999999998 57788  9999999875422 11        111111   122357788 899999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCC---CCC-CCCccCCCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE---PYM-KPGLSEMKN  222 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~E---P~~-~~~L~~~~n  222 (294)
                      +|++|+|.. .+..++ ++....+++++++++++.......+++.+.+...-+.+.-  ++..|   |.. ...|+.-..
T Consensus        97 vVilavp~~-~~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~~v~~hP--m~G~e~sG~~~A~~~Lf~g~~  172 (314)
T 3ggo_A           97 FVMLSSPVR-TFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHP--IAGTEKSGVEYSLDNLYEGKK  172 (314)
T ss_dssp             EEEECSCGG-GHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEE--CCCCCCCSGGGCCTTTTTTCE
T ss_pred             EEEEeCCHH-HHHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCCCEEecCc--ccCCcccchhhhhhhhhcCCE
Confidence            999999953 344444 5677789999999999877655566666666442222221  23333   111 135778888


Q ss_pred             eEEccCCC
Q 022672          223 AIVVPHIA  230 (294)
Q Consensus       223 viiTPHia  230 (294)
                      +++||+-+
T Consensus       173 ~il~~~~~  180 (314)
T 3ggo_A          173 VILTPTKK  180 (314)
T ss_dssp             EEECCCTT
T ss_pred             EEEEeCCC
Confidence            99999843

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.33  E-value=1.6e-12  Score=119.30  Aligned_cols=116  Identities=13%  Similarity=0.099  Sum_probs=92.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ...++|||||+|.||+.+|+.| ...|++|++||+++... +.+.        ..     +.....++++++++||+|++
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~l~--------~~-----g~~~~~~~~e~~~~aDvVi~   93 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRL-CEAGYALQVWNRTPARA-ASLA--------AL-----GATIHEQARAAARDADIVVS   93 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHHH--------TT-----TCEEESSHHHHHTTCSEEEE
T ss_pred             cCCCEEEEECccHHHHHHHHHH-HhCCCeEEEEcCCHHHH-HHHH--------HC-----CCEeeCCHHHHHhcCCEEEE
Confidence            4567999999999999999998 57899999999987542 2211        11     22345789999999999999


Q ss_pred             ccCCCccccccccH-HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 022672          151 HPVLDKTTYHLINK-ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  201 (294)
Q Consensus       151 ~~Plt~~t~~li~~-~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g  201 (294)
                      |+|....++.++.. +.+..++++.++||++++.+.+.+.+.+.+++..+..
T Consensus        94 ~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~  145 (320)
T 4dll_A           94 MLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAH  145 (320)
T ss_dssp             CCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             ECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEE
Confidence            99965566666543 5677899999999999999999999999998765543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.31  E-value=1.3e-11  Score=110.57  Aligned_cols=142  Identities=18%  Similarity=0.169  Sum_probs=97.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV~l  150 (294)
                      ++|||||+|.||+.+|+.| ...|+  +|++||++.... +..        ...+...   ....+++++++ +||+|++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l-~~~g~~~~V~~~d~~~~~~-~~~--------~~~g~~~---~~~~~~~~~~~~~aDvVil   68 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESI-SKA--------VDLGIID---EGTTSIAKVEDFSPDFVML   68 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHH-HHH--------HHTTSCS---EEESCGGGGGGTCCSEEEE
T ss_pred             cEEEEEecCHHHHHHHHHH-HhcCCCcEEEEEeCCHHHH-HHH--------HHCCCcc---cccCCHHHHhcCCCCEEEE
Confidence            5899999999999999998 56777  999999986542 111        1112110   12357888899 9999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC---CC-CCCccCCCCeEEc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP---YM-KPGLSEMKNAIVV  226 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP---~~-~~~L~~~~nviiT  226 (294)
                      |+|. ..+..++ .+....+++++++++++++.....+.+.+.+.++.+.+  .-++..|.   .. .++++..++++++
T Consensus        69 avp~-~~~~~v~-~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp~~a~~~l~~g~~~~~~  144 (281)
T 2g5c_A           69 SSPV-RTFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG--HPIAGTEKSGVEYSLDNLYEGKKVILT  144 (281)
T ss_dssp             CSCH-HHHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE--EEECCCSCCSGGGCCSSTTTTCEEEEC
T ss_pred             cCCH-HHHHHHH-HHHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceee--ccccCCccCChhhhhhHHhCCCCEEEe
Confidence            9994 3455555 35667789999999999988766677888876531111  12333332   21 2357777889999


Q ss_pred             cCCCCC
Q 022672          227 PHIASA  232 (294)
Q Consensus       227 PHia~~  232 (294)
                      ||.++.
T Consensus       145 ~~~~~~  150 (281)
T 2g5c_A          145 PTKKTD  150 (281)
T ss_dssp             CCSSSC
T ss_pred             cCCCCC
Confidence            997654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.31  E-value=8e-12  Score=116.49  Aligned_cols=123  Identities=15%  Similarity=0.246  Sum_probs=95.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC---C
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA---D  146 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a---D  146 (294)
                      .+.+++|||||+|.||+.+|+.| ...|.+|++||++.... +.+.        ..     +.....+++++++.+   |
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L-~~~G~~V~v~dr~~~~~-~~l~--------~~-----g~~~~~s~~e~~~~a~~~D   83 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRL-RKGGHECVVYDLNVNAV-QALE--------RE-----GIAGARSIEEFCAKLVKPR   83 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHH--------TT-----TCBCCSSHHHHHHHSCSSC
T ss_pred             hhcCCEEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHH--------HC-----CCEEeCCHHHHHhcCCCCC
Confidence            36678999999999999999998 57899999999987542 2211        11     123457899999999   9


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  209 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~  209 (294)
                      +|++|+|.. .+..++ .+.+..+++|.+||+++++...+...+.+.+.+..+......|+..
T Consensus        84 vVi~~vp~~-~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           84 VVWLMVPAA-VVDSML-QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             EEEECSCGG-GHHHHH-HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             EEEEeCCHH-HHHHHH-HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence            999999965 666666 6677889999999999999999999999999887776554455443

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.28  E-value=1.8e-11  Score=113.68  Aligned_cols=108  Identities=23%  Similarity=0.300  Sum_probs=86.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  148 (294)
                      ++.||||+|+|+|+||+.+|++| +++|++|+++|++...  ..+.+.+       +     .. ..+.++++. +||++
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l-~~~GakVvvsD~~~~~--~~~a~~~-------g-----a~-~v~~~ell~~~~DIl  235 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTER--VAHAVAL-------G-----HT-AVALEDVLSTPCDVF  235 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH--HHHHHHT-------T-----CE-ECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEeCCccH--HHHHHhc-------C-----CE-EeChHHhhcCcccee
Confidence            79999999999999999999997 7999999999987542  2221111       1     11 236678887 99999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +-     ..+.++|+.+.++.|| ..+++|.+|+.++++++ .++|+++.+.
T Consensus       236 iP-----~A~~~~I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          236 AP-----CAMGGVITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             EE-----CSCSCCBCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             cH-----hHHHhhcCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            74     3588999999999998 68999999999999777 5888888764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.28  E-value=5e-12  Score=113.90  Aligned_cols=112  Identities=17%  Similarity=0.090  Sum_probs=89.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||+.+|+.| ...|++|++||+++... +.+.        ..     +.....++++++++||+|++|+|
T Consensus         2 ~~i~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~~~--------~~-----g~~~~~~~~~~~~~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNL-VKAGCSVTIWNRSPEKA-EELA--------AL-----GAERAATPCEVVESCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGG-HHHH--------HT-----TCEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HC-----CCeecCCHHHHHhcCCEEEEEcC
Confidence            6899999999999999998 57899999999987543 2211        11     12345789999999999999999


Q ss_pred             CCccccccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          154 LDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       154 lt~~t~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ....++.++  .++.+..++++.++||+++....+...+.+.+++..+.
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR  115 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence            655666665  25566789999999999999999889999988876544

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.28  E-value=4e-12  Score=115.30  Aligned_cols=112  Identities=21%  Similarity=0.246  Sum_probs=89.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .++|||||+|.||+.+|+.| ...|++|++||+++... +.+.        ..     +.....+++++++ ||+|++|+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~-~~~~--------~~-----g~~~~~~~~~~~~-aDvvi~~v   78 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRM-TEWPGGVTVYDIRIEAM-TPLA--------EA-----GATLADSVADVAA-ADLIHITV   78 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHH-TTSTTCEEEECSSTTTS-HHHH--------HT-----TCEECSSHHHHTT-SSEEEECC
T ss_pred             CCeEEEECcCHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHH--------HC-----CCEEcCCHHHHHh-CCEEEEEC
Confidence            36899999999999999998 57899999999987542 1111        11     1234578999999 99999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  201 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g  201 (294)
                      |....++.++ ++.+..++++.++||+++........+.+.+.+..+..
T Consensus        79 p~~~~~~~v~-~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~  126 (296)
T 3qha_A           79 LDDAQVREVV-GELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHI  126 (296)
T ss_dssp             SSHHHHHHHH-HHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEE
T ss_pred             CChHHHHHHH-HHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEE
Confidence            9666666666 77788899999999999999999999999998765543

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.27  E-value=7.4e-11  Score=106.22  Aligned_cols=152  Identities=13%  Similarity=0.043  Sum_probs=101.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhh---hhhhhcC--CCC-------ccccccCCHHHH
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG---QFLKANG--EQP-------VTWKRASSMDEV  141 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~--~~~-------~~~~~~~~l~el  141 (294)
                      ++|+|||+|.||+.+|+.+ ...|++|++||++..... ...+...   ......+  ...       .......++++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~~~-~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~   82 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQT-AFHGFAVTAYDINTDALD-AAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA   82 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHHH-HHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence            6899999999999999998 478999999999875422 1111100   0000000  000       011235789999


Q ss_pred             hhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCC
Q 022672          142 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  221 (294)
Q Consensus       142 l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~  221 (294)
                      +++||+|+.++|.+.+.+..+-++....+++++++++.+.+  +...++.+++... ....++..+.       |.+..+
T Consensus        83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~-------p~~~~~  152 (283)
T 4e12_A           83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN-------HVWVNN  152 (283)
T ss_dssp             TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS-------STTTSC
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC-------CcccCc
Confidence            99999999999977667776667888889999999955443  3567787777543 3456666553       355678


Q ss_pred             CeEEccCCCCCcHHHHH
Q 022672          222 NAIVVPHIASASKWTRE  238 (294)
Q Consensus       222 nviiTPHia~~t~~~~~  238 (294)
                      .+.++||-. .+.+..+
T Consensus       153 lvevv~~~~-t~~~~~~  168 (283)
T 4e12_A          153 TAEVMGTTK-TDPEVYQ  168 (283)
T ss_dssp             EEEEEECTT-SCHHHHH
T ss_pred             eEEEEeCCC-CCHHHHH
Confidence            889999843 3444433

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.24  E-value=2.1e-11  Score=111.78  Aligned_cols=125  Identities=17%  Similarity=0.078  Sum_probs=89.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCch--hHHHHHHhhhhhhhhhcCCCCccccccC-CHHHHhhcCCEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRAS-SMDEVLREADVI  148 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ell~~aDiV  148 (294)
                      .++|||||+|.||..+|+.| ...| .+|++||++..  ...+...+.    +...+     .  .. ++++++++||+|
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L-~~~G~~~V~~~dr~~~~~~~~~~~~~~----~~~~g-----~--~~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGL-GGRNAARLAAYDLRFNDPAASGALRAR----AAELG-----V--EPLDDVAGIACADVV   91 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECGGGGCTTTHHHHHHH----HHHTT-----C--EEESSGGGGGGCSEE
T ss_pred             CCeEEEECccHHHHHHHHHH-HHcCCCeEEEEeCCCccccchHHHHHH----HHHCC-----C--CCCCHHHHHhcCCEE
Confidence            36899999999999999998 5789 99999998862  000111110    11112     1  35 788999999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  211 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  211 (294)
                      ++|+|....... + .+....++++.++||+++........+.+.+.+..+....--|+.++|
T Consensus        92 i~avp~~~~~~~-~-~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~  152 (317)
T 4ezb_A           92 LSLVVGAATKAV-A-ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVP  152 (317)
T ss_dssp             EECCCGGGHHHH-H-HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCST
T ss_pred             EEecCCHHHHHH-H-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCch
Confidence            999996554443 3 677788999999999999999999999999987654432223555433

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.23  E-value=1.6e-11  Score=111.45  Aligned_cols=119  Identities=13%  Similarity=0.162  Sum_probs=85.1

Q ss_pred             CCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .++||||| +|.||+++|+.| ...|++|++||++..                           .+.++.+++||+|++|
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l-~~~G~~V~~~~~~~~---------------------------~~~~~~~~~aDvVila   72 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDW---------------------------AVAESILANADVVIVS   72 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCG---------------------------GGHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCCHHHHHHHHHH-HhCCCeEEEEECCcc---------------------------cCHHHHhcCCCEEEEe
Confidence            56899999 999999999998 578999999997542                           1466788999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC--CCCccCCCCeEEccCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHI  229 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~--~~~L~~~~nviiTPHi  229 (294)
                      +|. ..+..++ ++....+++++++++++.......+++.+.+   ..     ++....|..  ..+++.-..+++|||-
T Consensus        73 vp~-~~~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~-----~~v~~hP~~g~~~~~~~g~~~~l~~~~  142 (298)
T 2pv7_A           73 VPI-NLTLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVH---TG-----AVLGLHPMFGADIASMAKQVVVRCDGR  142 (298)
T ss_dssp             SCG-GGHHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SS-----EEEEEEECSCTTCSCCTTCEEEEEEEE
T ss_pred             CCH-HHHHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhc---CC-----CEEeeCCCCCCCchhhcCCeEEEecCC
Confidence            994 3456665 4556678999999999876654444444432   11     233333432  2346666689999974

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.23  E-value=5.8e-12  Score=113.48  Aligned_cols=112  Identities=15%  Similarity=0.071  Sum_probs=87.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||+.+|+.| ...|++|++||+++.... .+.+        .     +.....++++++++||+|++|+|
T Consensus         2 ~~I~iiG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~-~~~~--------~-----g~~~~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANL-VRAGFDVTVWNRNPAKCA-PLVA--------L-----GARQASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HHHTCCEEEECSSGGGGH-HHHH--------H-----TCEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHHH-HHHH--------C-----CCeecCCHHHHHHcCCEEEEEcC
Confidence            4799999999999999998 467999999999876432 2111        1     12345789999999999999999


Q ss_pred             CCcccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          154 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       154 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ....++.++.  ++.+..++++.++||++++...+...+.+.+.+..+.
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           67 DPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             SHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            6556666552  4566789999999999999998889999888775443

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.22  E-value=7.4e-12  Score=113.79  Aligned_cols=113  Identities=19%  Similarity=0.148  Sum_probs=87.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV~l~  151 (294)
                      .++|||||+|.||+.+|+.| ...|.+|++||+++... +.+.        ..+     ... ..++++++++||+|++|
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~~~--------~~g-----~~~~~~~~~e~~~~aDvvi~~   71 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSC-LRAGLSTWGADLNPQAC-ANLL--------AEG-----ACGAAASAREFAGVVDALVIL   71 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHH--------HTT-----CSEEESSSTTTTTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHH--------HcC-----CccccCCHHHHHhcCCEEEEE
Confidence            46899999999999999998 57899999999987542 2211        111     122 46888999999999999


Q ss_pred             cCCCcccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          152 PVLDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       152 ~Plt~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +|.....+.++.  ++.+..++++.++||+++........+.+.+.+..+.
T Consensus        72 vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           72 VVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             CSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             CCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence            996556666552  4566789999999999999988888999988875443

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.22  E-value=1.3e-11  Score=108.83  Aligned_cols=109  Identities=10%  Similarity=0.152  Sum_probs=66.2

Q ss_pred             CCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhH-------------HHHHHhhhhhhhh
Q 022672           57 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-------------LEKFVTAYGQFLK  123 (294)
Q Consensus        57 ~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~-------------~~~~~~~~~~~~~  123 (294)
                      .|+.|.+......++.+++|||||+|.||+.+|+.| ...|.+|++||++....             ...+..       
T Consensus         3 ~~~~~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-------   74 (245)
T 3dtt_A            3 SDKIHHHHHHENLYFQGMKIAVLGTGTVGRTMAGAL-ADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLP-------   74 (245)
T ss_dssp             ----------------CCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHTCC-------CCHHHHGG-------
T ss_pred             cccccccccccccccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHh-------
Confidence            344454444556789999999999999999999998 57899999999987541             111110       


Q ss_pred             hcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHH-HhcCCCCcEEEEcCC
Q 022672          124 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCSR  181 (294)
Q Consensus       124 ~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~-l~~mk~gailIN~aR  181 (294)
                      ..     +.....++++++++||+|++|+|.... ...+. +. ...+ ++.++|+++-
T Consensus        75 ~~-----~~~~~~~~~e~~~~aDvVilavp~~~~-~~~~~-~i~~~~l-~g~ivi~~s~  125 (245)
T 3dtt_A           75 EH-----PHVHLAAFADVAAGAELVVNATEGASS-IAALT-AAGAENL-AGKILVDIAN  125 (245)
T ss_dssp             GS-----TTCEEEEHHHHHHHCSEEEECSCGGGH-HHHHH-HHCHHHH-TTSEEEECCC
T ss_pred             hc-----CceeccCHHHHHhcCCEEEEccCcHHH-HHHHH-Hhhhhhc-CCCEEEECCC
Confidence            00     112346789999999999999995433 33332 22 2334 7999999993

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.22  E-value=4.4e-11  Score=115.52  Aligned_cols=125  Identities=15%  Similarity=0.207  Sum_probs=95.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---cCCEEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVIS  149 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~  149 (294)
                      .++|||||+|.||+.+|+.| ...|.+|++||++.... +.+.+        .+..........+++|+++   ++|+|+
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L-~~~G~~V~v~dr~~~~~-~~l~~--------~g~~g~~i~~~~s~~e~v~~l~~aDvVi   73 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSKV-DDFLA--------NEAKGTKVVGAQSLKEMVSKLKKPRRII   73 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHHH-HHHHH--------TTTTTSSCEECSSHHHHHHTBCSSCEEE
T ss_pred             CCEEEEEChhHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHh--------cccCCCceeccCCHHHHHhhccCCCEEE
Confidence            35799999999999999998 57899999999987643 22211        1111112223478999887   499999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  208 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~  208 (294)
                      +++|....+..++ ++.+..|++|.++||++++...+...+.+.+.+..+.....-|..
T Consensus        74 l~Vp~~~~v~~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           74 LLVKAGQAVDDFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             ECSCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             EecCChHHHHHHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence            9999766777777 677888999999999999999999999999988766654444444

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.17  E-value=7.4e-11  Score=110.30  Aligned_cols=111  Identities=14%  Similarity=0.198  Sum_probs=77.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhc-----CCCCc--------cccccC
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-----GEQPV--------TWKRAS  136 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~--------~~~~~~  136 (294)
                      .+.+++|+|||+|.||..+|+.+ +++|++|++||++.... +...+ ++......     +....        ......
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l-~~~~~-lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~  257 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATA-KRLGAKTTGYDVRPEVA-EQVRS-VGAQWLDLGIDAAGEGGYARELSEAERAQQQQ  257 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSGGGH-HHHHH-TTCEECCCC-------------CHHHHHHHHH
T ss_pred             CcCCCEEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHH-cCCeEEeccccccccccchhhhhHHHHhhhHH
Confidence            57899999999999999999996 79999999999987542 11111 11100000     00000        001123


Q ss_pred             CHHHHhhcCCEEEEcc--CCCccccccccHHHHhcCCCCcEEEEcC--CCcc
Q 022672          137 SMDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPV  184 (294)
Q Consensus       137 ~l~ell~~aDiV~l~~--Plt~~t~~li~~~~l~~mk~gailIN~a--RG~~  184 (294)
                      +++++++++|+|+.++  |. ..+..+++++.++.||||+++||+|  +|+.
T Consensus       258 ~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~  308 (381)
T 3p2y_A          258 ALEDAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGN  308 (381)
T ss_dssp             HHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCS
T ss_pred             HHHHHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCc
Confidence            6789999999999875  53 3467889999999999999999996  4443

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.14  E-value=2.2e-10  Score=110.04  Aligned_cols=95  Identities=20%  Similarity=0.331  Sum_probs=76.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .++.||+++|+|+|.||+.+|++| +++|++|+++|+++....+...         .+     . ...+++++++.+|++
T Consensus       261 ~~L~GKtVvVtGaGgIG~aiA~~L-aa~GA~Viv~D~~~~~a~~Aa~---------~g-----~-dv~~lee~~~~aDvV  324 (488)
T 3ond_A          261 VMIAGKVAVVAGYGDVGKGCAAAL-KQAGARVIVTEIDPICALQATM---------EG-----L-QVLTLEDVVSEADIF  324 (488)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHH---------TT-----C-EECCGGGTTTTCSEE
T ss_pred             CcccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHH---------hC-----C-ccCCHHHHHHhcCEE
Confidence            468999999999999999999997 6999999999987644322111         11     1 235788999999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +.+.    .+.++++.+.++.||++++++|++++.
T Consensus       325 i~at----G~~~vl~~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          325 VTTT----GNKDIIMLDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             EECS----SCSCSBCHHHHTTSCTTEEEEESSSTT
T ss_pred             EeCC----CChhhhhHHHHHhcCCCeEEEEcCCCC
Confidence            9764    467889999999999999999999984

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.13  E-value=1.8e-10  Score=108.43  Aligned_cols=112  Identities=21%  Similarity=0.273  Sum_probs=78.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhc-------CCCCcccc---------
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-------GEQPVTWK---------  133 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------  133 (294)
                      .+.+.+|+|+|+|.||..+|+.+ +++|++|++||++.... +...+ ++......       +....++.         
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l-~~~~~-~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~  263 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATA-RRLGAVVSATDVRPAAK-EQVAS-LGAKFIAVEDEEFKAAETAGGYAKEMSGEYQV  263 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSTTHH-HHHHH-TTCEECCCCC-----------------CHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HHHHH-cCCceeecccccccccccccchhhhcchhhhh
Confidence            57899999999999999999986 79999999999987542 21111 11100000       00000000         


Q ss_pred             -ccCCHHHHhhcCCEEEEcc--CCCccccccccHHHHhcCCCCcEEEEcC--CCccc
Q 022672          134 -RASSMDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVI  185 (294)
Q Consensus       134 -~~~~l~ell~~aDiV~l~~--Plt~~t~~li~~~~l~~mk~gailIN~a--RG~~v  185 (294)
                       ...+++++++++|+|+.++  |. ..+..+++++.++.||||+++||+|  +|+.+
T Consensus       264 ~~~~~l~e~l~~aDVVI~tvlipg-~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~  319 (405)
T 4dio_A          264 KQAALVAEHIAKQDIVITTALIPG-RPAPRLVTREMLDSMKPGSVVVDLAVERGGNI  319 (405)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCCSS-SCCCCCBCHHHHTTSCTTCEEEETTGGGTCSB
T ss_pred             hhHhHHHHHhcCCCEEEECCcCCC-CCCCEEecHHHHhcCCCCCEEEEEeCCCCCCc
Confidence             1236889999999999875  53 3467889999999999999999997  66544

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.13  E-value=1.5e-10  Score=104.14  Aligned_cols=143  Identities=19%  Similarity=0.160  Sum_probs=95.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|||||+|.||+.+|+.|++ +.|.+|++||++.... +.+.        ..+..   .....+++++++++|+|++|+
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~-~~~~--------~~g~~---~~~~~~~~~~~~~aDvVilav   74 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSR-DIAL--------ERGIV---DEATADFKVFAALADVIILAV   74 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHH-HHHH--------HTTSC---SEEESCTTTTGGGCSEEEECS
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHHH--------HcCCc---ccccCCHHHhhcCCCEEEEcC
Confidence            689999999999999998853 2478999999976542 1111        11111   012356778889999999999


Q ss_pred             CCCccccccccHHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee---CCCC---CCCCC-CCccCCCCeE
Q 022672          153 VLDKTTYHLINKERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD---VFED---EPYMK-PGLSEMKNAI  224 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~-mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD---V~~~---EP~~~-~~L~~~~nvi  224 (294)
                      |.. ....++ ++.... +++++++++++.......+.+.+.+.+..+.  .++   ++..   .|... ..++.-++++
T Consensus        75 p~~-~~~~v~-~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~~  150 (290)
T 3b1f_A           75 PIK-KTIDFI-KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYYI  150 (290)
T ss_dssp             CHH-HHHHHH-HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEEE
T ss_pred             CHH-HHHHHH-HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeEE
Confidence            943 334444 445567 8999999999988776667787777652222  223   2211   23222 3577778899


Q ss_pred             EccCCCCC
Q 022672          225 VVPHIASA  232 (294)
Q Consensus       225 iTPHia~~  232 (294)
                      ++||.++.
T Consensus       151 ~~~~~~~~  158 (290)
T 3b1f_A          151 FSPSCLTK  158 (290)
T ss_dssp             EEECTTCC
T ss_pred             EecCCCCC
Confidence            99997654

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.08  E-value=6.2e-10  Score=107.56  Aligned_cols=119  Identities=15%  Similarity=0.153  Sum_probs=90.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CC
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---AD  146 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aD  146 (294)
                      ....++|||||+|.||+.+|+.| ...|.+|.+||+++... +.+...       ..  ..+.....+++++++.   +|
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~L-a~~G~~V~v~~r~~~~~-~~l~~~-------~~--~~gi~~~~s~~e~v~~l~~aD   80 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNI-ESRGYTVSIFNRSREKT-EEVIAE-------NP--GKKLVPYYTVKEFVESLETPR   80 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHH-HTTTCCEEEECSSHHHH-HHHHHH-------ST--TSCEEECSSHHHHHHTBCSSC
T ss_pred             ccCCCeEEEEccHHHHHHHHHHH-HhCCCeEEEEeCCHHHH-HHHHhh-------CC--CCCeEEeCCHHHHHhCCCCCC
Confidence            35667899999999999999998 47799999999986543 222111       00  0123345689999887   99


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +|++++|....+..++ ++....+++|.++||++.|...+...+.+.+.+..+.
T Consensus        81 vVil~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           81 RILLMVKAGAGTDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             EEEECSCSSSHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EEEEECCCHHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence            9999999766777777 5677889999999999999988888898888775443

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.07  E-value=2.5e-10  Score=102.97  Aligned_cols=110  Identities=17%  Similarity=0.187  Sum_probs=84.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|+|||+|.||+.+|+.| ...|.+|++||++.... +.+.        ..     +.....+++++++++|+|++|+|
T Consensus         6 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~~~--------~~-----g~~~~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVSDRNPEAI-ADVI--------AA-----GAETASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHHH--------HT-----TCEECSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHH--------HC-----CCeecCCHHHHHhCCCEEEEECC
Confidence            4899999999999999998 46799999999876542 2211        11     12334688999999999999999


Q ss_pred             CCcccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672          154 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       154 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  198 (294)
                      ....+..++.  ++....++++.++|+++.|...+.+.|.+.+.+..
T Consensus        71 ~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g  117 (299)
T 1vpd_A           71 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKG  117 (299)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence            6555565653  34557789999999999998877888988887643

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.07  E-value=2.8e-10  Score=102.68  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=84.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||+.+|+.| ...|++|++||++.... +.+.        ..     +.....+++++++++|+|++|+|
T Consensus         5 ~~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~~~--------~~-----g~~~~~~~~~~~~~~D~vi~~vp   69 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINL-LKEGVTVYAFDLMEANV-AAVV--------AQ-----GAQACENNQKVAAASDIIFTSLP   69 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHH-HHTTCEEEEECSSHHHH-HHHH--------TT-----TCEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHH--------HC-----CCeecCCHHHHHhCCCEEEEECC
Confidence            5899999999999999998 46799999999876542 2111        11     12334688999999999999999


Q ss_pred             CCcccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          154 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       154 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      ....+..++.  ++....++++.++|++++|...+.+.|.+.+.+.
T Consensus        70 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~  115 (301)
T 3cky_A           70 NAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEK  115 (301)
T ss_dssp             SHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            6555666664  3566778999999999999877778888888764

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.04  E-value=1.8e-10  Score=106.65  Aligned_cols=137  Identities=14%  Similarity=0.099  Sum_probs=86.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc----CCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----ADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~----aDiV~  149 (294)
                      ++|||||+|.||+++|+.| +..|.+|++||+++.... ..        ...+     .....++++++++    ||+|+
T Consensus         9 ~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~-~a--------~~~G-----~~~~~~~~e~~~~a~~~aDlVi   73 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDL-HAANHSVFGYNRSRSGAK-SA--------VDEG-----FDVSADLEATLQRAAAEDALIV   73 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEECSCHHHHH-HH--------HHTT-----CCEESCHHHHHHHHHHTTCEEE
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HH--------HHcC-----CeeeCCHHHHHHhcccCCCEEE
Confidence            5799999999999999998 678999999999875432 11        1112     1234678888765    69999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEE-eeCCCCC---CCC-CCCccCCCCeE
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG-LDVFEDE---PYM-KPGLSEMKNAI  224 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~-lDV~~~E---P~~-~~~L~~~~nvi  224 (294)
                      +|+|. ..+..++ ++. ..++++++++|++..+....+++.+.+.  .....+ -=++-.|   |.. ...|+.-.+++
T Consensus        74 lavP~-~~~~~vl-~~l-~~~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~i  148 (341)
T 3ktd_A           74 LAVPM-TAIDSLL-DAV-HTHAPNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWV  148 (341)
T ss_dssp             ECSCH-HHHHHHH-HHH-HHHCTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEE
T ss_pred             EeCCH-HHHHHHH-HHH-HccCCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEE
Confidence            99994 4556555 333 3458999999997655432333333321  111111 1122222   111 13577777899


Q ss_pred             EccCCC
Q 022672          225 VVPHIA  230 (294)
Q Consensus       225 iTPHia  230 (294)
                      +||+-.
T Consensus       149 ltp~~~  154 (341)
T 3ktd_A          149 VTFDQL  154 (341)
T ss_dssp             ECCGGG
T ss_pred             EEeCCC
Confidence            999743

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.02  E-value=1.5e-09  Score=96.93  Aligned_cols=139  Identities=15%  Similarity=0.105  Sum_probs=89.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|+|||+|.||+.+|+.| ...|++|++||++.... +.+.        ..+...   ....+++++ +++|+|++++|
T Consensus         1 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~~~--------~~g~~~---~~~~~~~~~-~~~D~vi~av~   66 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTC-EKAV--------ERQLVD---EAGQDLSLL-QTAKIIFLCTP   66 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHH--------HTTSCS---EEESCGGGG-TTCSEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHH--------hCCCCc---cccCCHHHh-CCCCEEEEECC
Confidence            4799999999999999998 57789999999876542 2211        111110   123578888 99999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCC---CCCC-CCccCCCCeEEccCC
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE---PYMK-PGLSEMKNAIVVPHI  229 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~E---P~~~-~~L~~~~nviiTPHi  229 (294)
                      . ..+..++ ++....+++++++|+++.......+.+.+.+.  ++.+. .-++..+   |... +.++.-+.++++|+-
T Consensus        67 ~-~~~~~~~-~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~  141 (279)
T 2f1k_A           67 I-QLILPTL-EKLIPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTE  141 (279)
T ss_dssp             H-HHHHHHH-HHHGGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECT
T ss_pred             H-HHHHHHH-HHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCC
Confidence            3 3444444 45667789999999997766655555555433  22221 1233112   2111 245666678999975


Q ss_pred             CC
Q 022672          230 AS  231 (294)
Q Consensus       230 a~  231 (294)
                      +.
T Consensus       142 ~~  143 (279)
T 2f1k_A          142 YT  143 (279)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.02  E-value=3.3e-10  Score=102.00  Aligned_cols=108  Identities=22%  Similarity=0.281  Sum_probs=80.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||+.+|+.| ...|++|++||++.... +.+        ...     +.....+++++++++|+|++|+|
T Consensus         1 m~i~iiG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~-~~~--------~~~-----g~~~~~~~~~~~~~~Dvvi~~vp   65 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNL-MKHGYPLIIYDVFPDAC-KEF--------QDA-----GEQVVSSPADVAEKADRIITMLP   65 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HHTTCCEEEECSSTHHH-HHH--------HTT-----TCEECSSHHHHHHHCSEEEECCS
T ss_pred             CeEEEEeccHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH--------HHc-----CCeecCCHHHHHhcCCEEEEeCC
Confidence            3699999999999999998 57799999999976542 221        111     12234688999999999999998


Q ss_pred             CCccccccccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          154 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       154 lt~~t~~li~~--~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ....+..++..  ..+..++++.++|+++.....+...+.+.+.+
T Consensus        66 ~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~  110 (296)
T 2gf2_A           66 TSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEK  110 (296)
T ss_dssp             SHHHHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            66566665533  24567899999999888777666777777764

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.02  E-value=2.8e-10  Score=102.34  Aligned_cols=108  Identities=15%  Similarity=0.117  Sum_probs=82.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||+.+|+.| ...|++|++|| +.... +.+.        ..     +.....+++++++++|+|++|+|
T Consensus         4 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~-~~~~~-~~~~--------~~-----g~~~~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINL-ARAGHQLHVTT-IGPVA-DELL--------SL-----GAVNVETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHH-HHTTCEEEECC-SSCCC-HHHH--------TT-----TCBCCSSHHHHHHTCSEEEECCS
T ss_pred             CEEEEEccCHHHHHHHHHH-HhCCCEEEEEc-CHHHH-HHHH--------Hc-----CCcccCCHHHHHhcCCEEEEECC
Confidence            4899999999999999998 46799999999 65432 2211        11     12234688999999999999999


Q ss_pred             CCccccccccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          154 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       154 lt~~t~~li~~--~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      ...++..++..  +....++++.++|+++.|...+.+.|.+.+.+.
T Consensus        68 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  113 (295)
T 1yb4_A           68 DTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM  113 (295)
T ss_dssp             SHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            65545555532  455678999999999999888888899888763

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.00  E-value=9.1e-10  Score=106.79  Aligned_cols=117  Identities=15%  Similarity=0.232  Sum_probs=88.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVIS  149 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~  149 (294)
                      ..+|||||+|.||+.+|+.|+ ..|.+|++||+++... +.+...      ...  ..+.....+++++++.   +|+|+
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~~-~~l~~~------~~~--~~gi~~~~s~~e~v~~l~~aDvVi   79 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAA-DHGFTVCAYNRTQSKV-DHFLAN------EAK--GKSIIGATSIEDFISKLKRPRKVM   79 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSSHHH-HHHHHT------TTT--TSSEECCSSHHHHHHTSCSSCEEE
T ss_pred             CCCEEEEeeHHHHHHHHHHHH-HCCCEEEEEeCCHHHH-HHHHcc------ccc--CCCeEEeCCHHHHHhcCCCCCEEE
Confidence            357999999999999999984 6799999999987643 222110      000  0123345689998887   99999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +++|....+..++ ++....+++|.++|+++.+...+...+.+.+.+..+.
T Consensus        80 l~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           80 LLVKAGAPVDALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             ECCCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EEcCChHHHHHHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence            9999666777777 5677889999999999999988888898888765443

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.99  E-value=7.4e-10  Score=100.83  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=82.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||+.+|+.| ...|.+|++||++.... +.+.        ..+     .....+++++++++|+|++|+|
T Consensus        31 ~~I~iIG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~-~~~~--------~~g-----~~~~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNL-LKMGHTVTVWNRTAEKC-DLFI--------QEG-----ARLGRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEECSSGGGG-HHHH--------HTT-----CEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHH--------HcC-----CEEcCCHHHHHhcCCEEEEeCC
Confidence            6899999999999999998 46789999999876542 2211        111     1234578899999999999999


Q ss_pred             CCccccccccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672          154 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       154 lt~~t~~li~~--~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  198 (294)
                      ....+..++..  ..+..++++.++|+++++.....+.+.+.+....
T Consensus        96 ~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~  142 (316)
T 2uyy_A           96 DPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRG  142 (316)
T ss_dssp             SHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence            65555555532  2456789999999999988777788888886533

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=98.99  E-value=5.4e-10  Score=103.25  Aligned_cols=137  Identities=20%  Similarity=0.165  Sum_probs=91.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ..+.+++|||||+|.||+++|+.| +..|++|++||++.....+..        ...+     .... ++++++++||+|
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L-~~~G~~V~~~~~~~~~~~~~a--------~~~G-----~~~~-~~~e~~~~aDvV   76 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAKA--------EAHG-----LKVA-DVKTAVAAADVV   76 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHHH--------HHTT-----CEEE-CHHHHHHTCSEE
T ss_pred             chhcCCEEEEECchHHHHHHHHHH-HHCcCEEEEEECChHHHHHHH--------HHCC-----CEEc-cHHHHHhcCCEE
Confidence            368899999999999999999998 578999999998765422211        1111     1222 788999999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCC-CC---CccC---CC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KP---GLSE---MK  221 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~---~L~~---~~  221 (294)
                      ++|+|.. ....++.++....|++++++++++  + +..  ..+.+.    ....+||+...|.. .+   .++.   -.
T Consensus        77 ilavp~~-~~~~v~~~~i~~~l~~~~ivi~~~--g-v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~  146 (338)
T 1np3_A           77 MILTPDE-FQGRLYKEEIEPNLKKGATLAFAH--G-FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGI  146 (338)
T ss_dssp             EECSCHH-HHHHHHHHHTGGGCCTTCEEEESC--C-HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCC
T ss_pred             EEeCCcH-HHHHHHHHHHHhhCCCCCEEEEcC--C-chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCC
Confidence            9999943 345555446667899999999873  2 222  111111    13345666656642 22   2343   56


Q ss_pred             CeEEccCCC
Q 022672          222 NAIVVPHIA  230 (294)
Q Consensus       222 nviiTPHia  230 (294)
                      ++++|||..
T Consensus       147 ~~ii~~~~~  155 (338)
T 1np3_A          147 PDLIAIYQD  155 (338)
T ss_dssp             CEEEEEEEC
T ss_pred             eEEEEecCC
Confidence            788999954

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.97  E-value=1.2e-09  Score=97.82  Aligned_cols=106  Identities=17%  Similarity=0.197  Sum_probs=80.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||+.+|+.|+ . |++|++||++.... +.+.+        .+     ..... ++++++++|+|++|+|
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~-~-g~~V~~~~~~~~~~-~~~~~--------~g-----~~~~~-~~~~~~~~D~vi~~v~   64 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLA-R-RFPTLVWNRTFEKA-LRHQE--------EF-----GSEAV-PLERVAEARVIFTCLP   64 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHH-T-TSCEEEECSSTHHH-HHHHH--------HH-----CCEEC-CGGGGGGCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHHh-C-CCeEEEEeCCHHHH-HHHHH--------CC-----CcccC-HHHHHhCCCEEEEeCC
Confidence            47999999999999999984 6 99999999876542 22111        01     11123 6678889999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      ....+..++ ++....++++.++|+++.+...+.+.|.+.+.+.
T Consensus        65 ~~~~~~~v~-~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  107 (289)
T 2cvz_A           65 TTREVYEVA-EALYPYLREGTYWVDATSGEPEASRRLAERLREK  107 (289)
T ss_dssp             SHHHHHHHH-HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            654466555 5566778999999999999888888899988764

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.96  E-value=1.6e-08  Score=96.94  Aligned_cols=141  Identities=18%  Similarity=0.190  Sum_probs=90.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC--------ccccccCCHHHHhhcC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--------VTWKRASSMDEVLREA  145 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~~a  145 (294)
                      ++|||||+|.||..+|..|+ ..|.+|++||++.............. ....+...        .......+++ .+++|
T Consensus        55 ~kVaVIGaG~MG~~IA~~la-~aG~~V~l~D~~~e~a~~~i~~~l~~-~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~a  131 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFG-LAGIETFLVVRNEQRCKQELEVMYAR-EKSFKRLNDKRIEKINANLKITSDFH-KLSNC  131 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHH-HHHTTSCCHHHHHHHHTTEEEESCGG-GCTTC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCeEEEEECcHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHhcceEEeCCHH-HHccC
Confidence            78999999999999999984 67999999999876322111111111 11111110        0112345675 68999


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeE
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI  224 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvi  224 (294)
                      |+|+.++|...+.+..+-++..+.++++++|+ |+|.   +....+.+.+.. .-...++.-|.  |.+     .++-+.
T Consensus       132 DlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSs---l~i~~ia~~~~~-p~r~iG~Hffn--Pv~-----~m~LvE  200 (460)
T 3k6j_A          132 DLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSS---LDLNEISSVLRD-PSNLVGIHFFN--PAN-----VIRLVE  200 (460)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS---SCHHHHHTTSSS-GGGEEEEECCS--STT-----TCCEEE
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCC---hhHHHHHHhccC-CcceEEEEecc--hhh-----hCCEEE
Confidence            99999999766665555567778899999996 5553   344566655543 34567777776  432     234466


Q ss_pred             EccC
Q 022672          225 VVPH  228 (294)
Q Consensus       225 iTPH  228 (294)
                      +.|+
T Consensus       201 Iv~g  204 (460)
T 3k6j_A          201 IIYG  204 (460)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            7775

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.96  E-value=2.4e-09  Score=103.22  Aligned_cols=116  Identities=16%  Similarity=0.142  Sum_probs=87.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l  150 (294)
                      ++|||||+|.||+.+|+.|+ ..|.+|.+||++.... +.+....       +  ..+.....+++++++.   +|+|++
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~-~~G~~V~v~dr~~~~~-~~l~~~~-------~--~~gi~~~~s~~e~v~~l~~aDvVil   74 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVE-SRGYTVAIYNRTTSKT-EEVFKEH-------Q--DKNLVFTKTLEEFVGSLEKPRRIML   74 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSHHHH-HHHHHHT-------T--TSCEEECSSHHHHHHTBCSSCEEEE
T ss_pred             CcEEEEeeHHHHHHHHHHHH-hCCCEEEEEcCCHHHH-HHHHHhC-------c--CCCeEEeCCHHHHHhhccCCCEEEE
Confidence            57999999999999999984 6789999999986542 2222111       0  0123345689999876   999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  201 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g  201 (294)
                      ++|....+..++ ++....+++|.++|+++.|...+...+.+.+.+..+..
T Consensus        75 avp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~  124 (474)
T 2iz1_A           75 MVQAGAATDATI-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINF  124 (474)
T ss_dssp             CCCTTHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEE
T ss_pred             EccCchHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeE
Confidence            999666667666 46667899999999999998888888888887654443

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.95  E-value=2.9e-09  Score=102.52  Aligned_cols=147  Identities=14%  Similarity=0.201  Sum_probs=93.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhc-CCCEEEEEcCCchhHHHHHHhhh--------hhhhhhcCCCCccccccCCHHHHhhc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLRE  144 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~-~g~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~  144 (294)
                      ++|+|||+|.||..+|..|++. .|.+|++||++.... +....+.        .+.+....  ..+.....++++.+++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~-~~l~~g~~~i~e~~l~~~~~~~~--~~~~~~t~~~~e~~~~   82 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRI-NAWNSPTLPIYEPGLKEVVESCR--GKNLFFSTNIDDAIKE   82 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHH-HHHTSSSCSSCCTTHHHHHHHHB--TTTEEEESCHHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHH-HHHhCCCCCcCCCCHHHHHHHhh--cCCEEEECCHHHHHhc
Confidence            5899999999999999998543 289999999986542 2111000        00000000  0112334678889999


Q ss_pred             CCEEEEccCCCccccccc-------------cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee---CCC
Q 022672          145 ADVISLHPVLDKTTYHLI-------------NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD---VFE  208 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li-------------~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD---V~~  208 (294)
                      ||+|++|+|...+..+.+             .++....|++++++|++|+..+-..+.+.+.+.+....+  +|   ++.
T Consensus        83 aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~--~d~~V~~~  160 (467)
T 2q3e_A           83 ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPN--LNLQVLSN  160 (467)
T ss_dssp             CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTT--CEEEEEEC
T ss_pred             CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCC--CCeEEEeC
Confidence            999999999444333211             234566789999999999988877888888887754222  33   356


Q ss_pred             CCCCCC-C---CccCCCCeEE
Q 022672          209 DEPYMK-P---GLSEMKNAIV  225 (294)
Q Consensus       209 ~EP~~~-~---~L~~~~nvii  225 (294)
                      +|+... .   .+...+++++
T Consensus       161 Pe~~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          161 PEFLAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCCCCTTSHHHHHHSCSCEEE
T ss_pred             HHHhhcccchhhccCCCEEEE
Confidence            666532 2   2455566654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.94  E-value=7.3e-09  Score=93.84  Aligned_cols=136  Identities=18%  Similarity=0.180  Sum_probs=87.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      -..|+|||||+|.||..+|+.| . .|.+|++||+++.... ...+.    +...  .-.+.....++++ +++||+|+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~l-a-aG~~V~v~d~~~~~~~-~~~~~----l~~~--~~~~i~~~~~~~~-~~~aDlVie   79 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAI-A-SKHEVVLQDVSEKALE-AAREQ----IPEE--LLSKIEFTTTLEK-VKDCDIVME   79 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHHHH-HHHHH----SCGG--GGGGEEEESSCTT-GGGCSEEEE
T ss_pred             cCCCeEEEEeeCHHHHHHHHHH-H-cCCEEEEEECCHHHHH-HHHHH----HHHH--HhCCeEEeCCHHH-HcCCCEEEE
Confidence            4578999999999999999998 5 7999999999875432 21111    0000  0001223456766 899999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHI  229 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailI-N~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHi  229 (294)
                      |+|...+.+..+-.+ +..+ ++++++ |+|.-+   ...+.+.+. ...+..++.-|.  |.     ...+-+.++|+-
T Consensus        80 avpe~~~vk~~l~~~-l~~~-~~~IlasntSti~---~~~~a~~~~-~~~r~~G~Hf~~--Pv-----~~~~lveiv~g~  146 (293)
T 1zej_A           80 AVFEDLNTKVEVLRE-VERL-TNAPLCSNTSVIS---VDDIAERLD-SPSRFLGVHWMN--PP-----HVMPLVEIVISR  146 (293)
T ss_dssp             CCCSCHHHHHHHHHH-HHTT-CCSCEEECCSSSC---HHHHHTTSS-CGGGEEEEEECS--ST-----TTCCEEEEEECT
T ss_pred             cCcCCHHHHHHHHHH-HhcC-CCCEEEEECCCcC---HHHHHHHhh-cccceEeEEecC--cc-----ccCCEEEEECCC
Confidence            999877766555444 5666 998885 887744   344544442 233455666665  43     234567777763

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.93  E-value=2.7e-09  Score=103.18  Aligned_cols=117  Identities=13%  Similarity=0.191  Sum_probs=86.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---cCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~l  150 (294)
                      ++|||||+|.||+.+|+.|+ ..|.+|.+||++.... +.+...      ..  ...+.....+++++++   ++|+|++
T Consensus         3 m~IgvIG~G~mG~~lA~~La-~~G~~V~v~dr~~~~~-~~l~~~------~~--~g~gi~~~~~~~e~v~~l~~aDvVil   72 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMN-DHGFVVCAFNRTVSKV-DDFLAN------EA--KGTKVLGAHSLEEMVSKLKKPRRIIL   72 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSTHHH-HHHHHT------TT--TTSSCEECSSHHHHHHHBCSSCEEEE
T ss_pred             CeEEEEChHHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHhc------cc--cCCCeEEeCCHHHHHhhccCCCEEEE
Confidence            47999999999999999984 6789999999986542 222110      00  0012234568889875   8999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  201 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g  201 (294)
                      ++|....+..++ .+....+++|.++|+++.|...+...+.+.+.+..+..
T Consensus        73 aVp~~~~v~~vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~  122 (482)
T 2pgd_A           73 LVKAGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILF  122 (482)
T ss_dssp             CSCTTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             eCCChHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeE
Confidence            999655677766 46667899999999999998888888888887654443

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.92  E-value=4.4e-09  Score=101.53  Aligned_cols=120  Identities=17%  Similarity=0.171  Sum_probs=87.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l  150 (294)
                      ++|||||+|.||+.+|+.| ...|.+|.+||++.... +.+....+..     ..+.......+++++++.   +|+|++
T Consensus         2 MkIgVIG~G~mG~~lA~~L-a~~G~~V~v~dr~~~~~-~~l~~~~g~~-----~~~~~i~~~~~~~e~v~~l~~aDvVil   74 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNI-AEKGFKVAVFNRTYSKS-EEFMKANASA-----PFAGNLKAFETMEAFAASLKKPRKALI   74 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHH-HHHHHHTTTS-----TTGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEChHHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHhcCCC-----CCCCCeEEECCHHHHHhcccCCCEEEE
Confidence            3699999999999999998 46799999999976542 2222111100     001112345689998874   999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  201 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g  201 (294)
                      ++|....+..++ ++....+++|.++|+++.|...+...+.+.+.+..+..
T Consensus        75 aVp~~~~v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~  124 (478)
T 1pgj_A           75 LVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRF  124 (478)
T ss_dssp             CCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEE
T ss_pred             ecCChHHHHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeE
Confidence            999655667666 56667899999999999998888888888887754443

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.90  E-value=3.3e-09  Score=93.91  Aligned_cols=103  Identities=12%  Similarity=0.075  Sum_probs=74.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc-hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|||||+|.||+.+|+.| ...|.+|++||+.. ....+.+.        ..+     ..  .+++++++++|+|++|+
T Consensus         1 M~I~iIG~G~mG~~la~~l-~~~g~~V~~~~~~~~~~~~~~~~--------~~g-----~~--~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRL-RSRGVEVVTSLEGRSPSTIERAR--------TVG-----VT--ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCEEEECCTTCCHHHHHHHH--------HHT-----CE--ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEechHHHHHHHHHH-HHCCCeEEEeCCccCHHHHHHHH--------HCC-----Cc--CCHHHHHhcCCEEEEEC
Confidence            3799999999999999998 46789999998731 11122211        111     11  46788899999999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      |.......+  .+....+++  ++|+++.+...+.+.|.+.+.+
T Consensus        65 ~~~~~~~~~--~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~  104 (264)
T 1i36_A           65 TPGVALGAA--RRAGRHVRG--IYVDINNISPETVRMASSLIEK  104 (264)
T ss_dssp             CGGGHHHHH--HHHHTTCCS--EEEECSCCCHHHHHHHHHHCSS
T ss_pred             CCHHHHHHH--HHHHHhcCc--EEEEccCCCHHHHHHHHHHHhh
Confidence            965444443  456677777  9999998887777788888765

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.89  E-value=1.5e-09  Score=103.84  Aligned_cols=101  Identities=21%  Similarity=0.217  Sum_probs=69.7

Q ss_pred             cccCC-CEEEEEcCChHHHHHHHHHhhcC------CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 022672           69 NLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  141 (294)
Q Consensus        69 ~~l~g-ktvGIIGlG~IG~~vA~~L~~~~------g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  141 (294)
                      ..|.| |+|||||+|.||.++|+.| +..      |++|++.++......+..        ...+.... .....+++|+
T Consensus        49 ~~L~GiKkIgIIGlGsMG~AmA~nL-r~s~~~~g~G~~ViVg~r~~sks~e~A--------~e~G~~v~-d~ta~s~aEA  118 (525)
T 3fr7_A           49 EAFKGIKQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKIGLRKGSKSFDEA--------RAAGFTEE-SGTLGDIWET  118 (525)
T ss_dssp             HHTTTCSEEEEECCTTHHHHHHHHH-HHHHHHTTCCCEEEEEECTTCSCHHHH--------HHTTCCTT-TTCEEEHHHH
T ss_pred             HHhcCCCEEEEEeEhHHHHHHHHHH-HhcccccCCCCEEEEEeCCchhhHHHH--------HHCCCEEe-cCCCCCHHHH
Confidence            56999 9999999999999999998 455      999886554432221111        11111110 0012578999


Q ss_pred             hhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          142 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       142 l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      +++||+|++++|.... ..++. +.+..||+|++| -.+-|
T Consensus       119 a~~ADVVILaVP~~~~-~eVl~-eI~p~LK~GaIL-s~AaG  156 (525)
T 3fr7_A          119 VSGSDLVLLLISDAAQ-ADNYE-KIFSHMKPNSIL-GLSHG  156 (525)
T ss_dssp             HHHCSEEEECSCHHHH-HHHHH-HHHHHSCTTCEE-EESSS
T ss_pred             HhcCCEEEECCChHHH-HHHHH-HHHHhcCCCCeE-EEeCC
Confidence            9999999999996544 34564 788999999985 56666

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.88  E-value=2.4e-09  Score=94.99  Aligned_cols=103  Identities=13%  Similarity=0.182  Sum_probs=74.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .++.+++|||||+|.||+.+|+.|+ ..|++ |.+||++.... +.+.+.+            +.....+++++++++|+
T Consensus         6 ~~~~~m~i~iiG~G~mG~~~a~~l~-~~g~~~v~~~~~~~~~~-~~~~~~~------------g~~~~~~~~~~~~~~Dv   71 (266)
T 3d1l_A            6 RSIEDTPIVLIGAGNLATNLAKALY-RKGFRIVQVYSRTEESA-RELAQKV------------EAEYTTDLAEVNPYAKL   71 (266)
T ss_dssp             -CGGGCCEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSHHHH-HHHHHHT------------TCEEESCGGGSCSCCSE
T ss_pred             cCCCCCeEEEEcCCHHHHHHHHHHH-HCCCeEEEEEeCCHHHH-HHHHHHc------------CCceeCCHHHHhcCCCE
Confidence            4566789999999999999999984 56888 89999876542 2221111            12234578888899999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCH
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      |++++|.. ....++ ++....+++++++|+++.|...+.
T Consensus        72 vi~av~~~-~~~~v~-~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           72 YIVSLKDS-AFAELL-QGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             EEECCCHH-HHHHHH-HHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             EEEecCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCchHH
Confidence            99999943 334444 455567889999999999877543

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.87  E-value=1.1e-08  Score=90.79  Aligned_cols=107  Identities=18%  Similarity=0.230  Sum_probs=76.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ++.| +++|||+|.||+++|+.| ...|++|+++|++.... +.+.+.+       +.     . ..+++++ +++|+|+
T Consensus       114 ~l~~-~v~iiG~G~~g~~~a~~l-~~~g~~v~v~~r~~~~~-~~l~~~~-------~~-----~-~~~~~~~-~~~Divi  176 (263)
T 2d5c_A          114 PLKG-PALVLGAGGAGRAVAFAL-REAGLEVWVWNRTPQRA-LALAEEF-------GL-----R-AVPLEKA-REARLLV  176 (263)
T ss_dssp             CCCS-CEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHH-HHHHHHH-------TC-----E-ECCGGGG-GGCSEEE
T ss_pred             CCCC-eEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHHHh-------cc-----c-hhhHhhc-cCCCEEE
Confidence            5788 999999999999999997 57888999999986432 2222211       11     1 2467788 9999999


Q ss_pred             EccCCCc--cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672          150 LHPVLDK--TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       150 l~~Plt~--~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  198 (294)
                      +|+|...  ++...+.   ...+++|+++++++.+.. +. .|.+++++..
T Consensus       177 ~~tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g  222 (263)
T 2d5c_A          177 NATRVGLEDPSASPLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKAKG  222 (263)
T ss_dssp             ECSSTTTTCTTCCSSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTT
T ss_pred             EccCCCCCCCCCCCCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCc
Confidence            9999652  2223443   466899999999998743 44 4777776543

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.87  E-value=1.3e-08  Score=91.26  Aligned_cols=106  Identities=18%  Similarity=0.230  Sum_probs=74.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ++.|++++|||.|.+|+++|+.| ...|++|++||++.... +.+.+.            .+.....+++++++++|+|+
T Consensus       126 ~~~~~~v~iiGaG~~g~aia~~L-~~~g~~V~v~~r~~~~~-~~l~~~------------~g~~~~~~~~~~~~~aDiVi  191 (275)
T 2hk9_A          126 EVKEKSILVLGAGGASRAVIYAL-VKEGAKVFLWNRTKEKA-IKLAQK------------FPLEVVNSPEEVIDKVQVIV  191 (275)
T ss_dssp             TGGGSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSHHHH-HHHTTT------------SCEEECSCGGGTGGGCSEEE
T ss_pred             CcCCCEEEEECchHHHHHHHHHH-HHcCCEEEEEECCHHHH-HHHHHH------------cCCeeehhHHhhhcCCCEEE
Confidence            57899999999999999999998 56788999999986432 221110            11222347888899999999


Q ss_pred             EccCCCcc--ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          150 LHPVLDKT--TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       150 l~~Plt~~--t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      +|+|....  +...++   +..++++.++++++.   . ...+.+..++
T Consensus       192 ~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~---~-~t~ll~~a~~  233 (275)
T 2hk9_A          192 NTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY---K-ETKLLKKAKE  233 (275)
T ss_dssp             ECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS---S-CCHHHHHHHH
T ss_pred             EeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC---C-hHHHHHHHHH
Confidence            99996542  223443   456899999999988   2 3334444444

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.39  E-value=2.2e-10  Score=98.34  Aligned_cols=94  Identities=19%  Similarity=0.192  Sum_probs=71.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      +.+++|||||+|.||+.+|+.| ...|++|++||++.. . +.+.        .     .+... .+++++++++|+|++
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~-~-~~~~--------~-----~g~~~-~~~~~~~~~aDvVil   79 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKM-LQCGYSVVFGSRNPQ-V-SSLL--------P-----RGAEV-LCYSEAASRSDVIVL   79 (201)
Confidence            7788999999999999999998 578999999998754 1 1110        0     11122 267788999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  185 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v  185 (294)
                      ++|. ..+..++  + +..+++++++||+++|-..
T Consensus        80 av~~-~~~~~v~--~-l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           80 AVHR-EHYDFLA--E-LADSLKGRVLIDVSNNQKM  110 (201)
Confidence            9995 4566665  2 4557789999999999754

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.86  E-value=8.6e-09  Score=96.05  Aligned_cols=108  Identities=17%  Similarity=0.236  Sum_probs=80.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  148 (294)
                      +|.||||+|+|+|+||+.+|+.| ..+|++|+++|++... ...+.+.+       +     .. ..+.++++. +||++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L-~~~GakVvv~D~~~~~-l~~~a~~~-------g-----a~-~v~~~~ll~~~~DIv  234 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAA-VSAAVAEE-------G-----AD-AVAPNAIYGVTCDIF  234 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH-HHHHHHHH-------C-----CE-ECCGGGTTTCCCSEE
T ss_pred             CCCcCEEEEECchHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHc-------C-----CE-EEChHHHhccCCcEe
Confidence            69999999999999999999997 6999999999987643 22222211       1     11 124556665 89999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i  199 (294)
                      +.|.     +.++|+.+.++.|+ ..++++.+++.+.+++ ..+.|+++.+
T Consensus       235 ip~a-----~~~~I~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi  278 (364)
T 1leh_A          235 APCA-----LGAVLNDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGI  278 (364)
T ss_dssp             EECS-----CSCCBSTTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTC
T ss_pred             eccc-----hHHHhCHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCC
Confidence            8774     57788888888884 5689999999988755 5566766655

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.85  E-value=1.4e-08  Score=81.86  Aligned_cols=93  Identities=13%  Similarity=0.250  Sum_probs=68.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      +++|+|||.|.||+.+++.| ...|++|+++|++.... +.+...++          .......+++++++++|+|+.++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l-~~~g~~v~v~~r~~~~~-~~~a~~~~----------~~~~~~~~~~~~~~~~Divi~at   88 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYF-SYPQYKVTVAGRNIDHV-RAFAEKYE----------YEYVLINDIDSLIKNNDVIITAT   88 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGC-CTTTCEEEEEESCHHHH-HHHHHHHT----------CEEEECSCHHHHHHTCSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCHHHH-HHHHHHhC----------CceEeecCHHHHhcCCCEEEEeC
Confidence            88999999999999999987 57899999999986542 22222221          11224568899999999999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      |..   ..++..   +.+++|.++++++...
T Consensus        89 ~~~---~~~~~~---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           89 SSK---TPIVEE---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             CCS---SCSBCG---GGCCTTCEEEECCSSC
T ss_pred             CCC---CcEeeH---HHcCCCCEEEEccCCc
Confidence            854   344544   4568899999987643

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.79  E-value=2.8e-08  Score=94.56  Aligned_cols=124  Identities=15%  Similarity=0.242  Sum_probs=83.2

Q ss_pred             cCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh--------hhhhhhcCCCCccccccCCH
Q 022672           67 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSM  138 (294)
Q Consensus        67 ~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l  138 (294)
                      ++++..-++|+|||+|.||..+|..|+ . |.+|++||+++... +.+..+.        .+.+.. .  ........++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La-~-G~~V~~~D~~~~~v-~~l~~g~~~i~e~~l~~ll~~-~--~~~l~~ttd~  103 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIA-Q-NHEVVALDIVQAKV-DMLNQKISPIVDKEIQEYLAE-K--PLNFRATTDK  103 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHH-S--CCCEEEESCH
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHH-c-CCeEEEEecCHHHh-hHHhccCCccccccHHHHHhh-c--cCCeEEEcCH
Confidence            456677789999999999999999985 5 99999999986542 2211100        000000 0  0123345688


Q ss_pred             HHHhhcCCEEEEccCCCccc-------cccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          139 DEVLREADVISLHPVLDKTT-------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       139 ~ell~~aDiV~l~~Plt~~t-------~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      ++.+++||+|++|+|...+.       ..+.  -+.... |++|+++|+.|+-.+-..+.+.+.+.+.
T Consensus       104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~  170 (432)
T 3pid_A          104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID  170 (432)
T ss_dssp             HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC
T ss_pred             HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc
Confidence            99999999999999954221       1121  245566 9999999999998888888898888764

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.77  E-value=1.6e-08  Score=88.96  Aligned_cols=105  Identities=23%  Similarity=0.320  Sum_probs=72.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC----EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ++|||||+|.||+.+|+.| ...|.    +|++||+++... +.+.+.+            +.....+.+++++++|+|+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l-~~~g~~~~~~V~~~~r~~~~~-~~~~~~~------------g~~~~~~~~e~~~~aDvVi   68 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGM-INKNIVSSNQIICSDLNTANL-KNASEKY------------GLTTTTDNNEVAKNADILI   68 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTSSCGGGEEEECSCHHHH-HHHHHHH------------CCEECSCHHHHHHHCSEEE
T ss_pred             CeEEEECccHHHHHHHHHH-HhCCCCCCCeEEEEeCCHHHH-HHHHHHh------------CCEEeCChHHHHHhCCEEE
Confidence            5799999999999999998 46787    999999986542 2221111            1234568899999999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      +|+|. .....++ ++....++++.++|.+.-|-  ..+.|.+.+..
T Consensus        69 lav~~-~~~~~v~-~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~  111 (247)
T 3gt0_A           69 LSIKP-DLYASII-NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK  111 (247)
T ss_dssp             ECSCT-TTHHHHC----CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred             EEeCH-HHHHHHH-HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence            99973 3344444 45556788999999776553  35566666644

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.76  E-value=1.6e-07  Score=84.90  Aligned_cols=143  Identities=15%  Similarity=0.153  Sum_probs=84.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhh---hhhhcCCCC-------------ccccccCC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ---FLKANGEQP-------------VTWKRASS  137 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~~~  137 (294)
                      ++|+|||+|.||..+|..|+ ..|.+|++||++...... .......   .+...+...             .......+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~~~-~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~   93 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAA-ATGHTVVLVDQTEDILAK-SKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD   93 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHH-HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEECCHHHHHH-HHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecC
Confidence            68999999999999999985 679999999998654321 1100000   000111100             01223468


Q ss_pred             HHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCc
Q 022672          138 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL  217 (294)
Q Consensus       138 l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L  217 (294)
                      +++.+++||+|++++|...+.+.-+-++....++++++++..+.+  +....+.+.+... -...++..+.  |.     
T Consensus        94 ~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~--i~~~~l~~~~~~~-~~~~g~h~~~--P~-----  163 (302)
T 1f0y_A           94 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTRQ-DRFAGLHFFN--PV-----  163 (302)
T ss_dssp             HHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSCG-GGEEEEEECS--ST-----
T ss_pred             HHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC--CCHHHHHHhcCCc-ccEEEEecCC--Cc-----
Confidence            888899999999999965443333335555678899998854444  3344555544321 1234555443  32     


Q ss_pred             cCCCCeEEccC
Q 022672          218 SEMKNAIVVPH  228 (294)
Q Consensus       218 ~~~~nviiTPH  228 (294)
                      ...+.+.+.++
T Consensus       164 ~~~~~~~i~~g  174 (302)
T 1f0y_A          164 PVMKLVEVIKT  174 (302)
T ss_dssp             TTCCEEEEECC
T ss_pred             ccCceEEEeCC
Confidence            22345556654

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.74  E-value=5.2e-08  Score=88.87  Aligned_cols=96  Identities=19%  Similarity=0.221  Sum_probs=71.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ..++|||||+|.||+.+++.|++.+|. +|.+||++.... +.+.+.+       +.   ......+++++++++|+|++
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~-~~l~~~~-------~~---~~~~~~~~~e~v~~aDiVi~  202 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENA-EKFADTV-------QG---EVRVCSSVQEAVAGADVIIT  202 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHH-HHHHHHS-------SS---CCEECSSHHHHHTTCSEEEE
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHH-HHHHHHh-------hC---CeEEeCCHHHHHhcCCEEEE
Confidence            467899999999999999988555677 899999986542 2322211       10   12235689999999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                      |+|.   +..++..   ..+++|.++++++....
T Consensus       203 atp~---~~~v~~~---~~l~~g~~vi~~g~~~p  230 (312)
T 2i99_A          203 VTLA---TEPILFG---EWVKPGAHINAVGASRP  230 (312)
T ss_dssp             CCCC---SSCCBCG---GGSCTTCEEEECCCCST
T ss_pred             EeCC---CCcccCH---HHcCCCcEEEeCCCCCC
Confidence            9984   3555654   57899999999976655

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.74  E-value=1e-07  Score=84.05  Aligned_cols=102  Identities=16%  Similarity=0.222  Sum_probs=73.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||+.+++.| ...|.+|.+||++.... +.+.+.+       +     .....+++++++++|+|++|+|
T Consensus         4 m~i~iiG~G~mG~~~a~~l-~~~g~~v~~~~~~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGL-KQTPHELIISGSSLERS-KEIAEQL-------A-----LPYAMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHHH-HHHHHHH-------T-----CCBCSSHHHHHHTCSEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHHc-------C-----CEeeCCHHHHHhcCCEEEEEeC
Confidence            4899999999999999998 57788999999986542 2222111       1     1234678999999999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                       ....     .+.+..++++.++|++..|--  .+.+.+.+..+
T Consensus        70 -~~~~-----~~v~~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           70 -PQLF-----ETVLKPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             -GGGH-----HHHHTTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             -cHhH-----HHHHHHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence             3332     455566778999999976643  34566666543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.72  E-value=2.3e-08  Score=86.26  Aligned_cols=95  Identities=16%  Similarity=0.214  Sum_probs=67.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+++|+|||+|.||+.+|+.| ...|.+|+++|++.... +.+        ...     +... .+++++++++|+|+++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l-~~~g~~V~~~~r~~~~~-~~~--------~~~-----g~~~-~~~~~~~~~~DvVi~a   90 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRL-VGSGFKVVVGSRNPKRT-ARL--------FPS-----AAQV-TFQEEAVSSPEVIFVA   90 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHH-HHTTCCEEEEESSHHHH-HHH--------SBT-----TSEE-EEHHHHTTSCSEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH--------HHc-----CCce-ecHHHHHhCCCEEEEC
Confidence            457899999999999999998 57789999999876432 111        111     1112 2788899999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  186 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  186 (294)
                      +|. .....++.   ++.+.+++++|++++|...+
T Consensus        91 v~~-~~~~~v~~---l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A           91 VFR-EHYSSLCS---LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             SCG-GGSGGGGG---GHHHHTTCEEEECCCCCHHH
T ss_pred             CCh-HHHHHHHH---HHHhcCCCEEEEeCCCcccc
Confidence            994 44555553   33333799999999997544

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.71  E-value=1.7e-08  Score=86.73  Aligned_cols=80  Identities=15%  Similarity=0.228  Sum_probs=60.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .++.+++|+|||+|.||+.+|+.| ...|.+|++||++..                                .+++||+|
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l-~~~g~~V~~~~~~~~--------------------------------~~~~aD~v   61 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNF-EIAGHEVTYYGSKDQ--------------------------------ATTLGEIV   61 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHH-HHTTCEEEEECTTCC--------------------------------CSSCCSEE
T ss_pred             cccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHH--------------------------------HhccCCEE
Confidence            468899999999999999999998 578999999986421                                45789999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                      ++++| ...+..++. +....++ ++++|++++|--
T Consensus        62 i~av~-~~~~~~v~~-~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           62 IMAVP-YPALAALAK-QYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             EECSC-HHHHHHHHH-HTHHHHT-TSEEEECCCCBC
T ss_pred             EEcCC-cHHHHHHHH-HHHHhcC-CCEEEEECCCCC
Confidence            99999 566665553 4445677 999999999765

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.71  E-value=5.8e-08  Score=88.84  Aligned_cols=108  Identities=19%  Similarity=0.276  Sum_probs=75.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCC----CEEEEEcCCch-hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      ...++|||||+|.||..+|+.|+ ..|    .+|++||++.. ...+.+.        ..+     .....+..+++++|
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~-~~G~~~~~~V~v~~r~~~~~~~~~l~--------~~G-----~~~~~~~~e~~~~a   85 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFT-AAGVLAAHKIMASSPDMDLATVSALR--------KMG-----VKLTPHNKETVQHS   85 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHH-HTTSSCGGGEEEECSCTTSHHHHHHH--------HHT-----CEEESCHHHHHHHC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH-HCCCCCcceEEEECCCccHHHHHHHH--------HcC-----CEEeCChHHHhccC
Confidence            44568999999999999999984 567    78999998764 1222211        111     22345788999999


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      |+|++|+| ......++ .+....+++++++|+++-|--  .+.|.+.+.+
T Consensus        86 DvVilav~-~~~~~~vl-~~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~  132 (322)
T 2izz_A           86 DVLFLAVK-PHIIPFIL-DEIGADIEDRHIVVSCAAGVT--ISSIEKKLSA  132 (322)
T ss_dssp             SEEEECSC-GGGHHHHH-HHHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred             CEEEEEeC-HHHHHHHH-HHHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence            99999999 44455544 455567889999999977643  4556666654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.68  E-value=1e-07  Score=91.29  Aligned_cols=119  Identities=15%  Similarity=0.167  Sum_probs=78.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhh--------hhhcCCCCccccccCCHHHHhhcC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF--------LKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      ++|+|||+|.||..+|..|+ ..|.+|++||++.... +.+..+....        +.... .........++++.+++|
T Consensus         3 mkI~VIG~G~vG~~lA~~La-~~G~~V~~~D~~~~~v-~~l~~g~~~i~e~gl~~~l~~~~-~~~~l~~t~d~~ea~~~a   79 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFA-ELGANVRCIDTDRNKI-EQLNSGTIPIYEPGLEKMIARNV-KAGRLRFGTEIEQAVPEA   79 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHHTCSCCCSTTHHHHHHHHH-HTTSEEEESCHHHHGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHH-hcCCEEEEEECCHHHH-HHHHcCCCcccCCCHHHHHHhhc-ccCcEEEECCHHHHHhcC
Confidence            58999999999999999984 6799999999986542 2221110000        00000 001123446899999999


Q ss_pred             CEEEEccCCCc---------cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          146 DVISLHPVLDK---------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       146 DiV~l~~Plt~---------~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      |+|++|+|...         ..+..+ ++....++++.++|+.|.-.+-..+.+.+.+.+
T Consensus        80 DvViiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           80 DIIFIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99999999432         222222 456677999999999997555555666666654

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.67  E-value=3.7e-08  Score=88.35  Aligned_cols=92  Identities=18%  Similarity=0.321  Sum_probs=68.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|||||+ |.||+.+|+.| ...|.+|++||++.... +.+.        ..+   .  . ..++.+++++||+|++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l-~~~g~~V~~~~r~~~~~-~~~~--------~~g---~--~-~~~~~~~~~~aDvVi~av   75 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKI-HDSAHHLAAIEIAPEGR-DRLQ--------GMG---I--P-LTDGDGWIDEADVVVLAL   75 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHSSSEEEEECCSHHHH-HHHH--------HTT---C--C-CCCSSGGGGTCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHH--------hcC---C--C-cCCHHHHhcCCCEEEEcC
Confidence            58999999 99999999998 57889999999976542 2211        111   1  1 135667889999999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      |.. .+..++ ++....+++++++|+++.|.
T Consensus        76 ~~~-~~~~v~-~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           76 PDN-IIEKVA-EDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             CHH-HHHHHH-HHHGGGSCTTCEEEESCSHH
T ss_pred             Cch-HHHHHH-HHHHHhCCCCCEEEECCCCc
Confidence            943 344444 45566789999999998876

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.66  E-value=1.8e-07  Score=90.36  Aligned_cols=141  Identities=21%  Similarity=0.284  Sum_probs=87.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhh---hcCCCCc--------cccccCCHHHHh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQPV--------TWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~l~ell  142 (294)
                      ++|||||+|.||..+|..|+ ..|.+|++||++..... ...+.....+.   ..+....        ......+++ .+
T Consensus         6 ~kVgVIGaG~MG~~IA~~la-~aG~~V~l~D~~~e~l~-~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   82 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAA-SHGHQVLLYDISAEALT-RAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-AL   82 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HTTCCEEEECSCHHHHH-HHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GG
T ss_pred             CEEEEECcCHHHHHHHHHHH-HCCCeEEEEECCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hh
Confidence            57999999999999999984 67999999999876432 21111100010   1111100        112345665 58


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  221 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gail-IN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~  221 (294)
                      ++||+|+.++|...+.+.-+-++..+.++++++| .|+|.-   ....|.+.+.. .-...++..|.+-|.       ++
T Consensus        83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti---~i~~ia~~~~~-p~~~ig~hf~~Pa~v-------~~  151 (483)
T 3mog_A           83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSI---SITAIAAEIKN-PERVAGLHFFNPAPV-------MK  151 (483)
T ss_dssp             GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSS---CHHHHTTTSSS-GGGEEEEEECSSTTT-------CC
T ss_pred             cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCC---CHHHHHHHccC-ccceEEeeecChhhh-------CC
Confidence            9999999999966555544446677789999999 467654   33455555532 335667776664332       24


Q ss_pred             CeEEccC
Q 022672          222 NAIVVPH  228 (294)
Q Consensus       222 nviiTPH  228 (294)
                      -+.+.|+
T Consensus       152 Lvevv~g  158 (483)
T 3mog_A          152 LVEVVSG  158 (483)
T ss_dssp             EEEEEEC
T ss_pred             eEEEecC
Confidence            4566665

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.65  E-value=6.2e-08  Score=87.01  Aligned_cols=106  Identities=10%  Similarity=0.071  Sum_probs=74.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCC---EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .++|||||+|.||+.+|+.| ...|.   +|++||++.... +.+.+.            .+.....+..+++++||+|+
T Consensus         3 ~~~I~iIG~G~mG~aia~~l-~~~g~~~~~V~v~dr~~~~~-~~l~~~------------~gi~~~~~~~~~~~~aDvVi   68 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGL-IANGYDPNRICVTNRSLDKL-DFFKEK------------CGVHTTQDNRQGALNADVVV   68 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHH-HHTTCCGGGEEEECSSSHHH-HHHHHT------------TCCEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEEcccHHHHHHHHHH-HHCCCCCCeEEEEeCCHHHH-HHHHHH------------cCCEEeCChHHHHhcCCeEE
Confidence            46899999999999999998 45677   899999987543 222111            12234468889999999999


Q ss_pred             EccCCCccccccccHHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          150 LHPVLDKTTYHLINKERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~-mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      +++|. .....++ ++.... +++++++|+++-|-  ..+.|.+.+..
T Consensus        69 lav~p-~~~~~vl-~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~  112 (280)
T 3tri_A           69 LAVKP-HQIKMVC-EELKDILSETKILVISLAVGV--TTPLIEKWLGK  112 (280)
T ss_dssp             ECSCG-GGHHHHH-HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTC
T ss_pred             EEeCH-HHHHHHH-HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCC
Confidence            99983 3333333 444445 78888999887654  45677777754

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.62  E-value=1.6e-07  Score=89.72  Aligned_cols=116  Identities=15%  Similarity=0.154  Sum_probs=79.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC-----------ccccccCCHHHHh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-----------VTWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~ell  142 (294)
                      -+++|||+|.||..+|..|+ ..|.+|++||+++... +.+..+..    ......           -......++++.+
T Consensus         9 ~~~~vIGlG~vG~~~A~~La-~~G~~V~~~D~~~~kv-~~l~~g~~----~~~epgl~~~~~~~~~~g~l~~ttd~~ea~   82 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFS-DFGHEVVCVDKDARKI-ELLHQNVM----PIYEPGLDALVASNVKAGRLSFTTDLAEGV   82 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCSTTH-HHHTTTCC----SSCCTTHHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCHHHH-HHHhcCCC----CccCCCHHHHHHhhcccCCEEEECCHHHHH
Confidence            47999999999999999985 6799999999987643 22111100    000000           0123457899999


Q ss_pred             hcCCEEEEccCCCcc----------ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          143 READVISLHPVLDKT----------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~----------t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ++||+|++|+|...+          .+..+ +.....|++|.++|+.|.-.+-..+.+.+.+.+
T Consensus        83 ~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e  145 (446)
T 4a7p_A           83 KDADAVFIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE  145 (446)
T ss_dssp             TTCSEEEECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence            999999999984321          12222 566778999999999997666666677776655

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.62  E-value=1.1e-07  Score=88.35  Aligned_cols=111  Identities=13%  Similarity=0.116  Sum_probs=73.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHh-hhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT-AYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .++|+|||.|.||..+|..| ...|.+|..|++++... +.... +...........+.......++++.++++|+|+++
T Consensus        29 ~mkI~VIGaG~mG~alA~~L-a~~G~~V~l~~r~~~~~-~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVila  106 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVL-ARKGQKVRLWSYESDHV-DEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIV  106 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HTTTCCEEEECSCHHHH-HHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEEC
T ss_pred             CCeEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEEC
Confidence            46899999999999999998 47789999999976432 22111 00000000000111123346899999999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCH
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      +|. ...+.++ ++....+++++++|+++.|-..++
T Consensus       107 Vp~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~t  140 (356)
T 3k96_A          107 VPS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKGS  140 (356)
T ss_dssp             CCH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTTT
T ss_pred             CCH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcCc
Confidence            993 3444444 556677899999999988765543

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.58  E-value=2e-07  Score=88.85  Aligned_cols=119  Identities=10%  Similarity=0.102  Sum_probs=77.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh--------hhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      ++|+|||+|.||..+|..|+ ..|.+|++||++.... +.+..+.        .+.+....... ......++++.+++|
T Consensus         1 mkI~VIG~G~vG~~~A~~la-~~G~~V~~~d~~~~~~-~~l~~~~~~i~e~~l~~~~~~~~~~g-~l~~t~~~~~~~~~a   77 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLS-ARGHEVIGVDVSSTKI-DLINQGKSPIVEPGLEALLQQGRQTG-RLSGTTDFKKAVLDS   77 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHTTCCSSCCTTHHHHHHHHHHTT-CEEEESCHHHHHHTC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCEEEEEECCHHHH-HHHhCCCCCcCCCCHHHHHHhhcccC-ceEEeCCHHHHhccC
Confidence            37999999999999999984 6799999999876542 2211100        00000000000 123346888889999


Q ss_pred             CEEEEccCCCcc---------ccccccHHHHhcCCC---CcEEEEcCCCcccC-HHHHHHHHHc
Q 022672          146 DVISLHPVLDKT---------TYHLINKERLATMKK---EAILVNCSRGPVID-EVALVEHLKQ  196 (294)
Q Consensus       146 DiV~l~~Plt~~---------t~~li~~~~l~~mk~---gailIN~aRG~~vd-~~aL~~aL~~  196 (294)
                      |+|++|+|...+         ....+ ++....|++   ++++|+.|...+-. .+.+.+.+.+
T Consensus        78 DvviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           78 DVSFICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             CEEEEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999999995443         22222 445566888   99999998776655 5667777765

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.54  E-value=5.9e-07  Score=79.08  Aligned_cols=98  Identities=22%  Similarity=0.326  Sum_probs=66.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCC----CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .++|||||+|.||+.+|+.|+ ..|    .+|++||++...                    .+.....+.+++++++|+|
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~-~~g~~~~~~v~~~~~~~~~--------------------~g~~~~~~~~~~~~~~D~v   62 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIA-NANIIKKENLFYYGPSKKN--------------------TTLNYMSSNEELARHCDII   62 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHH-HHTSSCGGGEEEECSSCCS--------------------SSSEECSCHHHHHHHCSEE
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCCCCCeEEEEeCCccc--------------------CceEEeCCHHHHHhcCCEE
Confidence            358999999999999999984 556    689999987542                    1122345788999999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ++|+| ......++ .+....++ +.++|....|  ++.+.+.+.+..
T Consensus        63 i~~v~-~~~~~~v~-~~l~~~l~-~~~vv~~~~g--i~~~~l~~~~~~  105 (262)
T 2rcy_A           63 VCAVK-PDIAGSVL-NNIKPYLS-SKLLISICGG--LNIGKLEEMVGS  105 (262)
T ss_dssp             EECSC-TTTHHHHH-HHSGGGCT-TCEEEECCSS--CCHHHHHHHHCT
T ss_pred             EEEeC-HHHHHHHH-HHHHHhcC-CCEEEEECCC--CCHHHHHHHhCC
Confidence            99999 34444444 34445564 4555554443  334566666654

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.52  E-value=4.4e-07  Score=87.55  Aligned_cols=120  Identities=18%  Similarity=0.198  Sum_probs=77.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhc-CCCEEEEEcCCchhHHHHHHhhh--------hhhhhhcCCCCccccccCCHHHHhhc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLRE  144 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~-~g~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~  144 (294)
                      ++|+|||+|.||..+|..|++. .|.+|++||++.... +.+..+.        .+.+....  ........++++.+++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v-~~l~~g~~~i~e~gl~~~~~~~~--~~~l~~t~~~~~~~~~   86 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKI-AEWNSDKLPIYEPGLDEIVFAAR--GRNLFFSSDIPKAIAE   86 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHH-HHHTSSSCSSCCTTHHHHHHHHB--TTTEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHCCCCCcCCCCHHHHHHHhh--cCCEEEECCHHHHhhc
Confidence            5899999999999999998654 389999999876542 2211100        00000000  0012334577888999


Q ss_pred             CCEEEEccCCCcccc-----------cc--ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          145 ADVISLHPVLDKTTY-----------HL--INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       145 aDiV~l~~Plt~~t~-----------~l--i~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      ||+|++|+|......           .+  +-+.....+++++++|+.|.-.+-..+.+.+.+.+
T Consensus        87 aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           87 ADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            999999998432110           11  12455677999999999887666556667777766

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.52  E-value=3.9e-07  Score=87.91  Aligned_cols=116  Identities=13%  Similarity=0.109  Sum_probs=74.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC-----------ccccccCCHHHH
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-----------VTWKRASSMDEV  141 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~el  141 (294)
                      .++|+|||+|.||..+|..|+ ..|.+|++||++.... +.......    ......           .......++++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la-~~G~~V~~~d~~~~~v-~~l~~~~~----~i~e~gl~~~l~~~~~~~~l~~ttd~~~a   81 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLA-DIGHDVFCLDVDQAKI-DILNNGGV----PIHEPGLKEVIARNRSAGRLRFSTDIEAA   81 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHTTCC----SSCCTTHHHHHHHHHHTTCEEEECCHHHH
T ss_pred             CceEEEECcCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHCCCC----CcCCCCHHHHHHHhcccCCEEEECCHHHH
Confidence            468999999999999999984 6899999999876532 22211100    000000           012334678888


Q ss_pred             hhcCCEEEEccCCC---------ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672          142 LREADVISLHPVLD---------KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       142 l~~aDiV~l~~Plt---------~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  195 (294)
                      +++||+|++|+|..         ...+..+ ++....+++++++|+.|.-.+-..+.+.+.+.
T Consensus        82 ~~~aDvviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~  143 (478)
T 2y0c_A           82 VAHGDVQFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVA  143 (478)
T ss_dssp             HHHCSEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHH
T ss_pred             hhcCCEEEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHH
Confidence            99999999999942         1222222 44566799999999998543433444544443

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.51  E-value=2.6e-07  Score=85.10  Aligned_cols=108  Identities=17%  Similarity=0.185  Sum_probs=69.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCC-------CEEEEEcCCchh----HHHHHHhhhhhhhhhc-C-CCCccccccCCHH
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQAT----RLEKFVTAYGQFLKAN-G-EQPVTWKRASSMD  139 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g-------~~V~~~d~~~~~----~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~  139 (294)
                      .++|+|||+|.||..+|..|+ ..|       .+|++||++...    ..+..... +...... + ..........+++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~-~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~   85 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVG-GNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQ-HENVKYLPGHKLPPNVVAVPDVV   85 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHH-HHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHH-SCCTTTSTTCCCCTTEEEESSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHH-hcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhc-CcccccCCcccCccCeEEEcCHH
Confidence            358999999999999999985 456       899999987651    11211110 0000000 0 0011223346788


Q ss_pred             HHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          140 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       140 ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                      +.+++||+|++++|. .....++ ++....+++++++|+++.|-.
T Consensus        86 ~~~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           86 QAAEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHHTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HHHcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            989999999999993 3444444 445567889999999988754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.51  E-value=4.3e-07  Score=83.41  Aligned_cols=118  Identities=14%  Similarity=0.153  Sum_probs=74.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCC-Cccc-cccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ell~~aDiV~l~  151 (294)
                      ++|+|||+|.||..+|..| ...|.+|++||++.... +.+.+..+..+...... .... ....+++++++++|+|+++
T Consensus         5 mki~iiG~G~~G~~~a~~L-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   82 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYL-ALKGQSVLAWDIDAQRI-KEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   82 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEe
Confidence            5899999999999999998 46789999999876432 22211100000000000 0001 1346888989999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                      +|.. .+..++ ++....+++++++|+. -|.......+.+.+.+
T Consensus        83 v~~~-~~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           83 VPAI-HHASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             SCGG-GHHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             CCch-HHHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            9954 344444 5566778999999998 4422344445555544

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.51  E-value=4.1e-07  Score=77.55  Aligned_cols=124  Identities=12%  Similarity=0.150  Sum_probs=81.0

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|+| .|.||+.+++.| ...|.+|+++|++.... +.+.+.++..+.   ...  .. ..+++++++++|+|++++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~---~~~--~~-~~~~~~~~~~~D~Vi~~~   72 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEKA-EAKAAEYRRIAG---DAS--IT-GMKNEDAAEACDIAVLTI   72 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHHH-HHHHHHHHHHHS---SCC--EE-EEEHHHHHHHCSEEEECS
T ss_pred             CeEEEEcCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHhccccc---cCC--CC-hhhHHHHHhcCCEEEEeC
Confidence            3799999 999999999998 57789999999876432 222211111010   001  11 257888999999999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCcccC------------HHHHHHHHHcCCcceEEeeCCCCCCC
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVID------------EVALVEHLKQNPMFRVGLDVFEDEPY  212 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd------------~~aL~~aL~~g~i~ga~lDV~~~EP~  212 (294)
                      | ...+..++ ++....++ +.++|+++.|--.+            .+.+.+.+..    ...++.+.++|.
T Consensus        73 ~-~~~~~~~~-~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~~~~~  137 (212)
T 1jay_A           73 P-WEHAIDTA-RDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALHTIPA  137 (212)
T ss_dssp             C-HHHHHHHH-HHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCTTCCH
T ss_pred             C-hhhHHHHH-HHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEccchHH
Confidence            9 33444433 23334454 89999999875532            4666666652    335688877764

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.50  E-value=1.3e-07  Score=83.33  Aligned_cols=101  Identities=17%  Similarity=0.205  Sum_probs=68.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|||||+|.||+.+|+.|+ ..| .+|++||++.... +.+.+.+       +     .....++++++ ++|+|++++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~-~~g~~~v~~~~r~~~~~-~~~~~~~-------g-----~~~~~~~~~~~-~~D~vi~~v   65 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLV-KQGGYRIYIANRGAEKR-ERLEKEL-------G-----VETSATLPELH-SDDVLILAV   65 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHCSCEEEEECSSHHHH-HHHHHHT-------C-----CEEESSCCCCC-TTSEEEECS
T ss_pred             CEEEEECchHHHHHHHHHHH-HCCCCeEEEECCCHHHH-HHHHHhc-------C-----CEEeCCHHHHh-cCCEEEEEe
Confidence            47999999999999999984 568 8999999986542 2221111       1     12234666778 999999999


Q ss_pred             CCCccccccccHHHHhcCCC-CcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          153 VLDKTTYHLINKERLATMKK-EAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~-gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      | ......     .+..+++ +.++|+++.|--  .+.|.+.+..+
T Consensus        66 ~-~~~~~~-----v~~~l~~~~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           66 K-PQDMEA-----ACKNIRTNGALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             C-HHHHHH-----HHTTCCCTTCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             C-chhHHH-----HHHHhccCCCEEEEecCCCC--HHHHHHHcCCC
Confidence            9 444333     3333432 899999865543  36677766553

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.46  E-value=4e-07  Score=84.66  Aligned_cols=104  Identities=16%  Similarity=0.309  Sum_probs=73.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+.+++|.|+|.|.+|+.+++.+ +.+|++|+++|++.... +...+..+...      ........++.+.++++|+|+
T Consensus       164 ~l~~~~VlViGaGgvG~~aa~~a-~~~Ga~V~v~dr~~~r~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~DvVI  235 (361)
T 1pjc_A          164 GVKPGKVVILGGGVVGTEAAKMA-VGLGAQVQIFDINVERL-SYLETLFGSRV------ELLYSNSAEIETAVAEADLLI  235 (361)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHHGGGS------EEEECCHHHHHHHHHTCSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHHhhCcee------EeeeCCHHHHHHHHcCCCEEE
Confidence            47889999999999999999986 79999999999986542 22111111000      000001124667788999999


Q ss_pred             EccCCCc-cccccccHHHHhcCCCCcEEEEcCC
Q 022672          150 LHPVLDK-TTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       150 l~~Plt~-~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .+++... .+..++.++.++.|+++++++|++-
T Consensus       236 ~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             ECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            9997533 2345668889999999999999974

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.46  E-value=8.7e-07  Score=83.55  Aligned_cols=116  Identities=16%  Similarity=0.250  Sum_probs=76.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh--------hhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      ++|+|||+|.||..+|..|+ . |.+|++||++.... +.+....        .+.+.. .  ........++++.+++|
T Consensus         1 MkI~VIG~G~vG~~~A~~La-~-G~~V~~~d~~~~~~-~~l~~~~~~i~e~~l~~~~~~-~--~~~l~~t~~~~~~~~~a   74 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLS-L-QNEVTIVDILPSKV-DKINNGLSPIQDEYIEYYLKS-K--QLSIKATLDSKAAYKEA   74 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-T-TSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHH-S--CCCEEEESCHHHHHHHC
T ss_pred             CEEEEECCCHHHHHHHHHHh-C-CCEEEEEECCHHHH-HHHHcCCCCcCCCCHHHHHHh-c--cCcEEEeCCHHHHhcCC
Confidence            37999999999999999985 5 89999999976542 2211100        000000 0  00112345778889999


Q ss_pred             CEEEEccCCCc----------cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          146 DVISLHPVLDK----------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       146 DiV~l~~Plt~----------~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      |+|++|+|...          .....+ +.... +++++++|+.+.-.+-..+.+.+.+.+.
T Consensus        75 Dvviiavpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           75 ELVIIATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             SEEEECCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             CEEEEecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            99999999542          122222 34556 8999999998777766677777776553

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.45  E-value=5.6e-07  Score=80.77  Aligned_cols=81  Identities=15%  Similarity=0.141  Sum_probs=67.1

Q ss_pred             CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.|+++.|||.|. +|+.+|+.| .+.|++|+.++++.                            .++.+.+++||
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL-~~~gAtVtv~hs~t----------------------------~~L~~~~~~AD  204 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMEL-LLAGCTTTVTHRFT----------------------------KNLRHHVENAD  204 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HTTTCEEEEECSSC----------------------------SCHHHHHHHCS
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHH-HHCCCeEEEEeCCc----------------------------hhHHHHhccCC
Confidence            4579999999999997 599999997 68999999886432                            47889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                      +|+.+++-    .+++..+.   +|+|+++||+|.-.+
T Consensus       205 IVI~Avg~----p~lI~~~~---vk~GavVIDVgi~r~  235 (288)
T 1b0a_A          205 LLIVAVGK----PGFIPGDW---IKEGAIVIDVGINRL  235 (288)
T ss_dssp             EEEECSCC----TTCBCTTT---SCTTCEEEECCCEEC
T ss_pred             EEEECCCC----cCcCCHHH---cCCCcEEEEccCCcc
Confidence            99999982    33677766   489999999987553

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.44  E-value=8.8e-07  Score=79.39  Aligned_cols=81  Identities=19%  Similarity=0.221  Sum_probs=66.7

Q ss_pred             CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||.|. +|+.+|..| .+.|++|+.++++.                            .++++.+++||
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL-~~~gAtVtv~hs~T----------------------------~~L~~~~~~AD  206 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALEL-LLGGCTVTVTHRFT----------------------------RDLADHVSRAD  206 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHH-HHTTCEEEEECTTC----------------------------SCHHHHHHTCS
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHH-HHCCCeEEEEeCCC----------------------------cCHHHHhccCC
Confidence            4579999999999987 799999997 68899999876421                            36889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                      +|+.+++.    .+++..+.   +|||+++||++.-.+
T Consensus       207 IVI~Avg~----p~~I~~~~---vk~GavVIDvgi~~~  237 (286)
T 4a5o_A          207 LVVVAAGK----PGLVKGEW---IKEGAIVIDVGINRQ  237 (286)
T ss_dssp             EEEECCCC----TTCBCGGG---SCTTCEEEECCSCSS
T ss_pred             EEEECCCC----CCCCCHHH---cCCCeEEEEeccccc
Confidence            99999982    45677655   599999999986553

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.44  E-value=1.9e-07  Score=86.64  Aligned_cols=107  Identities=14%  Similarity=0.179  Sum_probs=69.2

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhh-cC-CCCccccccCCHHHHhhcCCEEEEcc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NG-EQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      +|+|||+|.||..+|..| ...|.+|++||++.... +.+.+.. ..... .+ ....+.....+++++++++|+|++++
T Consensus        17 kI~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~~~-~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav   93 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVL-SKKCREVCVWHMNEEEV-RLVNEKR-ENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   93 (366)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTEEEEEEECSCHHHH-HHHHHHT-BCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECC
T ss_pred             eEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHcC-cccccccccccccceeeeCCHHHHHcCCCEEEECC
Confidence            899999999999999998 46789999999876432 2221110 00000 00 00111233467889899999999999


Q ss_pred             CCCccccccccHH---HHhcCCC-CcEEEEcCCCccc
Q 022672          153 VLDKTTYHLINKE---RLATMKK-EAILVNCSRGPVI  185 (294)
Q Consensus       153 Plt~~t~~li~~~---~l~~mk~-gailIN~aRG~~v  185 (294)
                      |. .....++...   ....+++ ++++|+++.|-..
T Consensus        94 ~~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           94 PT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             CH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             Ch-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            93 4444444221   4455678 8999999877443

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.43  E-value=7.1e-07  Score=80.01  Aligned_cols=81  Identities=20%  Similarity=0.284  Sum_probs=66.9

Q ss_pred             CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||.|. +|+.+|+.| ...|++|+.++++.                            .++++.+++||
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL-~~~gAtVtv~h~~t----------------------------~~L~~~~~~AD  205 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATML-LNAGATVSVCHIKT----------------------------KDLSLYTRQAD  205 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTTC----------------------------SCHHHHHTTCS
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCCc----------------------------hhHHHHhhcCC
Confidence            4579999999999988 699999997 68899999886531                            36889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                      +|+.+++.    .+++..+.   +|+|+++||++.-.+
T Consensus       206 IVI~Avg~----p~~I~~~~---vk~GavVIDVgi~~~  236 (285)
T 3p2o_A          206 LIIVAAGC----VNLLRSDM---VKEGVIVVDVGINRL  236 (285)
T ss_dssp             EEEECSSC----TTCBCGGG---SCTTEEEEECCCEEC
T ss_pred             EEEECCCC----CCcCCHHH---cCCCeEEEEeccCcc
Confidence            99999982    45677655   599999999986543

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.42  E-value=3.1e-07  Score=85.53  Aligned_cols=105  Identities=12%  Similarity=0.133  Sum_probs=67.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCC-------CEEEEEcCCch-----hHHHHHHhhhhhhhhh-cC-CCCccccccCCHH
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQA-----TRLEKFVTAYGQFLKA-NG-EQPVTWKRASSMD  139 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~  139 (294)
                      ++|+|||+|.||..+|..|+ ..|       .+|++||++..     .. +..... +..... .+ ..+.+.....+++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~-~~G~~~~~~~~~V~~~~r~~~~~~~~~~-~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~   98 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVG-TNAKNNYLFENEVRMWIRDEFVNGERMV-DIINNK-HENTKYLKGVPLPHNIVAHSDLA   98 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHH-HHHHHCTTBCSCEEEECCSCC---CCHH-HHHHHH-CBCTTTSTTCBCCTTEEEESSTH
T ss_pred             CEEEEECcCHHHHHHHHHHH-HcCCccCCCCCeEEEEECChhhhhHHHH-HHHHhc-CcccccCCcccCcCCeEEECCHH
Confidence            47999999999999999985 445       89999998765     21 111110 000000 00 0011223346788


Q ss_pred             HHhhcCCEEEEccCCCccccccccHHHHh----cCCCCcEEEEcCCCc
Q 022672          140 EVLREADVISLHPVLDKTTYHLINKERLA----TMKKEAILVNCSRGP  183 (294)
Q Consensus       140 ell~~aDiV~l~~Plt~~t~~li~~~~l~----~mk~gailIN~aRG~  183 (294)
                      +.++++|+|++++| +.....++ ++...    .+++++++|+++.|-
T Consensus        99 ea~~~aDvVilav~-~~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A           99 SVINDADLLIFIVP-CQYLESVL-ASIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             HHHTTCSEEEECCC-HHHHHHHH-HHHTC---CCCCTTCEEEECCCSC
T ss_pred             HHHcCCCEEEEcCC-HHHHHHHH-HHHhhhhhccCCCCCEEEEeCCcc
Confidence            88999999999999 34444443 33444    678899999998773

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.42  E-value=8.9e-07  Score=79.15  Aligned_cols=111  Identities=18%  Similarity=0.226  Sum_probs=81.1

Q ss_pred             CcccCCCEEEEEcCChH-HHHHHHHHhhcC--CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 022672           68 GNLLKGQTVGVIGAGRI-GSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  144 (294)
Q Consensus        68 g~~l~gktvGIIGlG~I-G~~vA~~L~~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  144 (294)
                      +.++.||++.|||.|.| |+.+|+.| .+.  |++|+.++++.                            .++.+.+++
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL-~~~g~~atVtv~h~~t----------------------------~~L~~~~~~  203 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLL-TRRSENATVTLCHTGT----------------------------RDLPALTRQ  203 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-TSTTTCCEEEEECTTC----------------------------SCHHHHHTT
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHH-hcCCCCCEEEEEECch----------------------------hHHHHHHhh
Confidence            45799999999999985 99999997 577  89999886432                            478899999


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeE
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI  224 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvi  224 (294)
                      ||+|+.+++-    .+++..++   +|+|+++||+|.-.+-|              |..=||- .+      ... .--.
T Consensus       204 ADIVI~Avg~----p~~I~~~~---vk~GavVIDVgi~r~~~--------------glvGDVd-~~------v~~-~a~~  254 (281)
T 2c2x_A          204 ADIVVAAVGV----AHLLTADM---VRPGAAVIDVGVSRTDD--------------GLVGDVH-PD------VWE-LAGH  254 (281)
T ss_dssp             CSEEEECSCC----TTCBCGGG---SCTTCEEEECCEEEETT--------------EEEESBC-GG------GGG-TCSE
T ss_pred             CCEEEECCCC----CcccCHHH---cCCCcEEEEccCCCCCC--------------CccCccc-cc------hhh-heee
Confidence            9999999982    33677776   48999999998755332              2334774 21      112 2235


Q ss_pred             EccCCCCCcHHH
Q 022672          225 VVPHIASASKWT  236 (294)
Q Consensus       225 iTPHia~~t~~~  236 (294)
                      +||==||.-.-+
T Consensus       255 iTPVPGGVGpmT  266 (281)
T 2c2x_A          255 VSPNPGGVGPLT  266 (281)
T ss_dssp             EECSSSSSHHHH
T ss_pred             ecCCCCCccHHH
Confidence            788777765443

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.42  E-value=7.3e-07  Score=79.51  Aligned_cols=77  Identities=9%  Similarity=0.183  Sum_probs=64.7

Q ss_pred             cCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      +.||++.|||.|. +|+.+|+.| .+.|++|+.++++.                            .++++.+++||+|+
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL-~~~gAtVtv~~~~t----------------------------~~L~~~~~~ADIVI  198 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMML-LNRNYTVSVCHSKT----------------------------KDIGSMTRSSKIVV  198 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTTC----------------------------SCHHHHHHHSSEEE
T ss_pred             cCCCEEEEEcCChHHHHHHHHHH-HHCCCeEEEEeCCc----------------------------ccHHHhhccCCEEE
Confidence            8999999999986 799999997 68999999886531                            47889999999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      .+++.    .+++..+.   +|+|+++||++.-.
T Consensus       199 ~Avg~----p~~I~~~~---vk~GavVIDvgi~~  225 (276)
T 3ngx_A          199 VAVGR----PGFLNREM---VTPGSVVIDVGINY  225 (276)
T ss_dssp             ECSSC----TTCBCGGG---CCTTCEEEECCCEE
T ss_pred             ECCCC----CccccHhh---ccCCcEEEEeccCc
Confidence            99983    34677765   59999999998644

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.41  E-value=7.1e-07  Score=85.96  Aligned_cols=116  Identities=13%  Similarity=0.106  Sum_probs=75.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcC-CC-EEEEEcCCch----hHHHHHHhhh----------hhhhhhcCCCCccccccCC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGF-KM-NLIYYDLYQA----TRLEKFVTAY----------GQFLKANGEQPVTWKRASS  137 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~-g~-~V~~~d~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  137 (294)
                      ++|+|||+|.||..+|..|+ .. |. +|++||++..    .. +.+..+.          .+.+.... ..-......+
T Consensus        19 mkIaVIGlG~mG~~lA~~la-~~~G~~~V~~~D~~~~~~~~kv-~~l~~g~~~i~~~e~gl~~l~~~~~-~~g~l~~ttd   95 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFA-DAPCFEKVLGFQRNSKSSGYKI-EMLNRGESPLKGEEPGLEELIGKVV-KAGKFECTPD   95 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HSTTCCEEEEECCCCTTTTTHH-HHHTTTCCCSSCCGGGHHHHHHHHH-HTTCEEEESC
T ss_pred             CEEEEECcCHHHHHHHHHHH-HhCCCCeEEEEECChhHhHHHH-HHHHhcCCCccccCCCHHHHHHhhc-ccCCeEEeCc
Confidence            58999999999999999985 56 89 9999999876    32 2211100          00000000 0001122344


Q ss_pred             HHHHhhcCCEEEEccCCCc--------cccccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 022672          138 MDEVLREADVISLHPVLDK--------TTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEH  193 (294)
Q Consensus       138 l~ell~~aDiV~l~~Plt~--------~t~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~a  193 (294)
                       .+.+++||+|++|+|...        +...+.  .+.....+++|+++|+.|.-.+-..+.+.+.
T Consensus        96 -~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~  160 (478)
T 3g79_A           96 -FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQ  160 (478)
T ss_dssp             -GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHH
T ss_pred             -HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHH
Confidence             578899999999999542        222222  2456778999999999998777666666653

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.41  E-value=8.8e-07  Score=79.42  Aligned_cols=80  Identities=15%  Similarity=0.273  Sum_probs=65.9

Q ss_pred             CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||.|. +|+.+|+.| .+.|++|+.++++.                            .++++.+++||
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL-~~~gAtVtv~hs~t----------------------------~~L~~~~~~AD  206 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLL-LNAKATVTTCHRFT----------------------------TDLKSHTTKAD  206 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTTC----------------------------SSHHHHHTTCS
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHH-HHCCCeEEEEeCCc----------------------------hhHHHhcccCC
Confidence            3579999999999988 699999997 68899998876431                            36889999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +|+.+++.    .+++..+.   +|+|+++||++.-.
T Consensus       207 IVI~Avg~----p~~I~~~~---vk~GavVIDvgi~~  236 (285)
T 3l07_A          207 ILIVAVGK----PNFITADM---VKEGAVVIDVGINH  236 (285)
T ss_dssp             EEEECCCC----TTCBCGGG---SCTTCEEEECCCEE
T ss_pred             EEEECCCC----CCCCCHHH---cCCCcEEEEecccC
Confidence            99999982    44577655   59999999998644

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.40  E-value=4.3e-07  Score=73.10  Aligned_cols=104  Identities=13%  Similarity=0.120  Sum_probs=74.8

Q ss_pred             ccCCCEEEEEcC----ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           70 LLKGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        70 ~l~gktvGIIGl----G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      ..+-++|+|||+    |.+|+.+++.| ...|++|+.+|+.....                   .+...+.+++|+....
T Consensus        11 l~~p~~IavIGaS~~~g~~G~~~~~~L-~~~G~~V~~vnp~~~~i-------------------~G~~~~~s~~el~~~v   70 (138)
T 1y81_A           11 SKEFRKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDEI-------------------EGLKCYRSVRELPKDV   70 (138)
T ss_dssp             ---CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGSCTTC
T ss_pred             ccCCCeEEEEeecCCCCCHHHHHHHHH-HHCCCEEEEeCCCCCeE-------------------CCeeecCCHHHhCCCC
Confidence            355678999999    99999999998 57888998888864221                   1233456899999999


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      |++++++| .+....++ .+..+ +..++++++++.    ..+++.+.+++..+.
T Consensus        71 Dlvii~vp-~~~v~~v~-~~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           71 DVIVFVVP-PKVGLQVA-KEAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             CEEEECSC-HHHHHHHH-HHHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             CEEEEEeC-HHHHHHHH-HHHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            99999999 46666665 33444 566778887754    257777777776554

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.40  E-value=2.3e-06  Score=82.08  Aligned_cols=130  Identities=15%  Similarity=0.156  Sum_probs=77.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh----hhhhh-----hcCCCCccccccCCHHHHhh
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY----GQFLK-----ANGEQPVTWKRASSMDEVLR  143 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~l~ell~  143 (294)
                      -++|+|||+|.||..+|..| ...|.+|++||++..... ......    ...+.     .............++ +.++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~l-a~~G~~V~l~D~~~~~~~-~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~  113 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISF-ARVGISVVAVESDPKQLD-AAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELS  113 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSHHHHH-HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGT
T ss_pred             CCEEEEECcCHHHHHHHHHH-HhCCCeEEEEECCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHC
Confidence            46899999999999999998 477999999999865322 111100    00000     000000001123466 4678


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  208 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~  208 (294)
                      +||+|+.++|...+.+.-+-++....++++++|+... .+ +....|.+.+.. .-...++..|.
T Consensus       114 ~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snT-s~-~~~~~la~~~~~-~~~~ig~hf~~  175 (463)
T 1zcj_A          114 TVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNT-SA-LNVDDIASSTDR-PQLVIGTHFFS  175 (463)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECC-SS-SCHHHHHTTSSC-GGGEEEEEECS
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCC-CC-cCHHHHHHHhcC-CcceEEeecCC
Confidence            9999999999543333333355667789999998633 33 334466665532 22345666663

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.40  E-value=6.2e-07  Score=81.63  Aligned_cols=116  Identities=16%  Similarity=0.154  Sum_probs=72.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcC--CchhHHHHHHhhhhhhhhhcCCCCccccccC--CHHHHhhcCCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQPVTWKRAS--SMDEVLREADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~ell~~aDiV~  149 (294)
                      ++|+|||+|.||..+|..|+ ..|.+|++||+  +... .+.+... +..... +..-.......  ++++.++++|+|+
T Consensus         1 m~I~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~~~~~~-~~~~~~~-~~~~~~-g~~~~~~~~~~~~~~~~~~~~~D~vi   76 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLV-DNGNEVRIWGTEFDTEI-LKSISAG-REHPRL-GVKLNGVEIFWPEQLEKCLENAEVVL   76 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HHCCEEEEECCGGGHHH-HHHHHTT-CCBTTT-TBCCCSEEEECGGGHHHHHTTCSEEE
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEEccCCHHH-HHHHHHh-CcCccc-CccccceEEecHHhHHHHHhcCCEEE
Confidence            37999999999999999984 66889999998  5433 2221110 000000 00000012223  6778889999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCc---c-cCHHHHHHHHHc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP---V-IDEVALVEHLKQ  196 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~---~-vd~~aL~~aL~~  196 (294)
                      +++|. ..+..++ ++... +++++++|+++.|-   - -..+.+.+.+.+
T Consensus        77 ~~v~~-~~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           77 LGVST-DGVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             ECSCG-GGHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             EcCCh-HHHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            99994 3444444 34556 88999999998774   1 122345555544

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.39  E-value=1.2e-06  Score=79.10  Aligned_cols=134  Identities=16%  Similarity=0.244  Sum_probs=87.0

Q ss_pred             CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.|+++.|||.|. +|+.+|+.| .+.|++|+.++++                            ..++.+.+++||
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL-~~~gAtVtv~hs~----------------------------t~~L~~~~~~AD  210 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLL-LWNNATVTTCHSK----------------------------TAHLDEEVNKGD  210 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTT----------------------------CSSHHHHHTTCS
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHH-HhCCCeEEEEECC----------------------------cccHHHHhccCC
Confidence            4579999999999996 699999997 6899999988643                            147899999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC-CcceEEeeCCCCCCCCCCCccCCCCeEE
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVFEDEPYMKPGLSEMKNAIV  225 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~L~~~~nvii  225 (294)
                      +|+.+++-    .++|..++   +|||+++||+|.-.+-|..     -++| ++.|   ||--.+      ... .--.+
T Consensus       211 IVI~Avg~----p~~I~~~~---vk~GavVIDVgi~~~~d~~-----~~~g~klvG---DVdf~~------v~~-~a~~i  268 (301)
T 1a4i_A          211 ILVVATGQ----PEMVKGEW---IKPGAIVIDCGINYVPDDK-----KPNGRKVVG---DVAYDE------AKE-RASFI  268 (301)
T ss_dssp             EEEECCCC----TTCBCGGG---SCTTCEEEECCCBC---------------CCBC---SBCHHH------HTT-TCSEE
T ss_pred             EEEECCCC----cccCCHHH---cCCCcEEEEccCCCccccc-----ccCCCeeec---cccHHH------hhh-hceEe
Confidence            99999983    34677766   5799999999986543221     0123 3332   552111      111 13468


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 022672          226 VPHIASASKWTREGMATLAALNVLGKI  252 (294)
Q Consensus       226 TPHia~~t~~~~~~~~~~~~~nl~~~~  252 (294)
                      ||==||.-.-+...+....++..++++
T Consensus       269 TPVPGGVGpmTiamLl~Ntv~aa~~~~  295 (301)
T 1a4i_A          269 TPVPGGVGPMTVAMLMQSTVESAKRFL  295 (301)
T ss_dssp             CCSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence            897777655444434444444433333

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.39  E-value=9.9e-07  Score=79.14  Aligned_cols=110  Identities=14%  Similarity=0.124  Sum_probs=72.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      ..+.||++.|+|.|.+|++++..| ...|+ +|++++|+..... .        +.    .........+++++++++|+
T Consensus       113 ~~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~a~-~--------la----~~~~~~~~~~~~~~~~~aDi  178 (277)
T 3don_A          113 EGIEDAYILILGAGGASKGIANEL-YKIVRPTLTVANRTMSRFN-N--------WS----LNINKINLSHAESHLDEFDI  178 (277)
T ss_dssp             TTGGGCCEEEECCSHHHHHHHHHH-HTTCCSCCEEECSCGGGGT-T--------CC----SCCEEECHHHHHHTGGGCSE
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHHH-H--------HH----HhcccccHhhHHHHhcCCCE
Confidence            358899999999999999999998 57898 8999999865421 1        10    11111123456677889999


Q ss_pred             EEEccCCC--ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          148 ISLHPVLD--KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       148 V~l~~Plt--~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      |+.++|..  +.....++   .+.++++.+++++..... .+ .|.++.++.
T Consensus       179 VInaTp~Gm~~~~~~~l~---~~~l~~~~~V~D~vY~P~-~T-~ll~~A~~~  225 (277)
T 3don_A          179 IINTTPAGMNGNTDSVIS---LNRLASHTLVSDIVYNPY-KT-PILIEAEQR  225 (277)
T ss_dssp             EEECCC-------CCSSC---CTTCCSSCEEEESCCSSS-SC-HHHHHHHHT
T ss_pred             EEECccCCCCCCCcCCCC---HHHcCCCCEEEEecCCCC-CC-HHHHHHHHC
Confidence            99999964  22221232   356789999999987643 33 355544443

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.38  E-value=1.9e-06  Score=87.05  Aligned_cols=143  Identities=18%  Similarity=0.176  Sum_probs=85.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCCC--------ccccccCCHHHH
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEV  141 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~l~el  141 (294)
                      =++|||||+|.||..+|..++ ..|.+|++||++.......   ....... +...+...        .......++ +.
T Consensus       314 i~kV~VIGaG~MG~~iA~~la-~aG~~V~l~D~~~~~~~~~~~~i~~~l~~-~~~~G~~~~~~~~~~~~~i~~~~d~-~~  390 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSA-SKGTPILMKDINEHGIEQGLAEAAKLLVG-RVDKGRMTPAKMAEVLNGIRPTLSY-GD  390 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHHHHH-HHTTTSSCHHHHHHHHHHEEEESSS-TT
T ss_pred             CCEEEEECCChhhHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHhcCeEEECCH-HH
Confidence            357999999999999999984 6799999999987543211   0000000 11111110        001223456 66


Q ss_pred             hhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCC
Q 022672          142 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  221 (294)
Q Consensus       142 l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~  221 (294)
                      +++||+|+.++|...+.+.-+-++..+.++++++|+..+.+  +....+.+.+.. .-...++..|.  |.     ..++
T Consensus       391 ~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-~~~~ig~hf~~--P~-----~~~~  460 (715)
T 1wdk_A          391 FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKR-PENFVGMHFFN--PV-----HMMP  460 (715)
T ss_dssp             GGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSC-GGGEEEEECCS--ST-----TTCC
T ss_pred             HCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhcC-ccceEEEEccC--Cc-----ccCc
Confidence            89999999999976655544445667789999999744332  333455555432 22346666665  32     2344


Q ss_pred             CeEEccC
Q 022672          222 NAIVVPH  228 (294)
Q Consensus       222 nviiTPH  228 (294)
                      .+.+.|+
T Consensus       461 lvevv~g  467 (715)
T 1wdk_A          461 LVEVIRG  467 (715)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEC
Confidence            5556554

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.38  E-value=2.2e-06  Score=75.82  Aligned_cols=106  Identities=16%  Similarity=0.164  Sum_probs=74.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.| +++|||.|.+|++++..| ...|+ +|++++|+..+. +.+        .    ...+.....++++.++++|+|
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L-~~~G~~~I~v~nR~~~ka-~~l--------a----~~~~~~~~~~~~~~~~~aDiV  170 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYAL-LQMGVKDIWVVNRTIERA-KAL--------D----FPVKIFSLDQLDEVVKKAKSL  170 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHH-HHTTCCCEEEEESCHHHH-HTC--------C----SSCEEEEGGGHHHHHHTCSEE
T ss_pred             CCCC-eEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHH--------H----HHcccCCHHHHHhhhcCCCEE
Confidence            3578 999999999999999998 57888 899999986542 111        0    111112345688889999999


Q ss_pred             EEccCCC--ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          149 SLHPVLD--KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       149 ~l~~Plt--~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      +.++|..  ++ ...++.+.   ++++.+++++..+   .+.-|.++.+.|
T Consensus       171 Inatp~gm~p~-~~~i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          171 FNTTSVGMKGE-ELPVSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             EECSSTTTTSC-CCSCCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             EECCCCCCCCC-CCCCCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            9999863  22 22344443   5689999999888   455555666555

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.37  E-value=9.2e-07  Score=79.84  Aligned_cols=80  Identities=21%  Similarity=0.279  Sum_probs=65.5

Q ss_pred             CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHH--HHhhc
Q 022672           68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EVLRE  144 (294)
Q Consensus        68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--ell~~  144 (294)
                      +.++.||++.|||.|. +|+.+|+.| ...|++|+.++++.                            .+++  +.+++
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL-~~~gAtVtv~~~~T----------------------------~~l~l~~~~~~  210 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALL-MKENATVTIVHSGT----------------------------STEDMIDYLRT  210 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTTS----------------------------CHHHHHHHHHT
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCCC----------------------------CCchhhhhhcc
Confidence            3579999999999988 799999997 68899999987632                            1355  88999


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      ||+|+.++|.    .+++..+.   +|+|+++||++.-.
T Consensus       211 ADIVI~Avg~----p~~I~~~~---vk~GavVIDvgi~~  242 (300)
T 4a26_A          211 ADIVIAAMGQ----PGYVKGEW---IKEGAAVVDVGTTP  242 (300)
T ss_dssp             CSEEEECSCC----TTCBCGGG---SCTTCEEEECCCEE
T ss_pred             CCEEEECCCC----CCCCcHHh---cCCCcEEEEEeccC
Confidence            9999999983    34677655   59999999998644

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.36  E-value=2.5e-06  Score=86.19  Aligned_cols=142  Identities=19%  Similarity=0.164  Sum_probs=83.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhh---hhcCCC--------CccccccCCHHHHh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KANGEQ--------PVTWKRASSMDEVL  142 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~l~ell  142 (294)
                      ++|||||+|.||..+|..|+ ..|.+|++||++...... ........+   ...+..        ........++ +.+
T Consensus       313 ~kV~VIGaG~MG~~iA~~la-~aG~~V~l~D~~~~~~~~-~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~  389 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALI-LSNYPVILKEVNEKFLEA-GIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESF  389 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-TTTCCEEEECSSHHHHHH-HHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGG
T ss_pred             cEEEEEcCCHhhHHHHHHHH-hCCCEEEEEECCHHHHHH-HHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHH
Confidence            68999999999999999984 679999999998754321 111000000   011100        0011233466 568


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  222 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~n  222 (294)
                      ++||+|+.++|...+.+.-+-++..+.++++++|+..+.+  +....+.+.+.. .-...++..|.  |.     ..+|.
T Consensus       390 ~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-p~~~iG~hf~~--P~-----~~~~l  459 (725)
T 2wtb_A          390 RDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKS-QDRIVGAHFFS--PA-----HIMPL  459 (725)
T ss_dssp             TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSC-TTTEEEEEECS--ST-----TTCCE
T ss_pred             CCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcC-CCCEEEecCCC--Cc-----ccCce
Confidence            9999999999966554444445667789999998644332  333445554422 22345666665  32     22445


Q ss_pred             eEEccC
Q 022672          223 AIVVPH  228 (294)
Q Consensus       223 viiTPH  228 (294)
                      +.+.|+
T Consensus       460 vevv~g  465 (725)
T 2wtb_A          460 LEIVRT  465 (725)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            666554

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.36  E-value=9.9e-07  Score=76.14  Aligned_cols=91  Identities=22%  Similarity=0.200  Sum_probs=60.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      -++|+|||+|.||+.+|+.| ...|.+|++ ||++.... +.+...+       +     .....+..+.++++|+|+++
T Consensus        23 mmkI~IIG~G~mG~~la~~l-~~~g~~V~~v~~r~~~~~-~~l~~~~-------g-----~~~~~~~~~~~~~aDvVila   88 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERF-TAAQIPAIIANSRGPASL-SSVTDRF-------G-----ASVKAVELKDALQADVVILA   88 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHH-HHTTCCEEEECTTCGGGG-HHHHHHH-------T-----TTEEECCHHHHTTSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCCHHHH-HHHHHHh-------C-----CCcccChHHHHhcCCEEEEe
Confidence            36899999999999999998 467899988 99876542 2221111       1     11122445668899999999


Q ss_pred             cCCCccccccccHHHHhcC--CCCcEEEEcCCCc
Q 022672          152 PVLDKTTYHLINKERLATM--KKEAILVNCSRGP  183 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~m--k~gailIN~aRG~  183 (294)
                      +|. ....     +.+..+  .++.++|+++-|-
T Consensus        89 vp~-~~~~-----~v~~~l~~~~~~ivi~~~~g~  116 (220)
T 4huj_A           89 VPY-DSIA-----DIVTQVSDWGGQIVVDASNAI  116 (220)
T ss_dssp             SCG-GGHH-----HHHTTCSCCTTCEEEECCCCB
T ss_pred             CCh-HHHH-----HHHHHhhccCCCEEEEcCCCC
Confidence            993 2222     233322  3578999998654

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.33  E-value=8.1e-07  Score=81.11  Aligned_cols=100  Identities=17%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             CcccCCCEEEEEcCChH-HHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc---c--CCHHHH
Q 022672           68 GNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---A--SSMDEV  141 (294)
Q Consensus        68 g~~l~gktvGIIGlG~I-G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~l~el  141 (294)
                      +.++.|+++.|||.|.| |+.+|+.| .+.|++|+.+|++.....+..     ..+   .........   .  .++++.
T Consensus       172 g~~l~gk~vvVIG~G~iVG~~~A~~L-~~~gAtVtv~nR~~~~l~~ra-----~~l---a~~~~~~t~~~~t~~~~L~e~  242 (320)
T 1edz_A          172 GNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTRG-----ESL---KLNKHHVEDLGEYSEDLLKKC  242 (320)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEESC-----CCS---SCCCCEEEEEEECCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCcchHHHHHHHH-HHCCCEEEEEeCchHHHHhHH-----HHH---hhhcccccccccccHhHHHHH
Confidence            45799999999999975 99999997 688999999988633211100     000   000000000   1  468899


Q ss_pred             hhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          142 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       142 l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      +++||+|+.+++.   ..-+|..+.   +|+|+++||+|..
T Consensus       243 l~~ADIVIsAtg~---p~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          243 SLDSDVVITGVPS---ENYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             HHHCSEEEECCCC---TTCCBCTTT---SCTTEEEEECSSS
T ss_pred             hccCCEEEECCCC---CcceeCHHH---cCCCeEEEEcCCC
Confidence            9999999999973   122376665   4899999999764

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.33  E-value=2e-06  Score=81.86  Aligned_cols=109  Identities=19%  Similarity=0.241  Sum_probs=74.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---------
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---------  141 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---------  141 (294)
                      -+|.++.|||+|.+|..+|..|+ ..|.+|++||+++... +.+..         +..+.   ....++|+         
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La-~~G~~V~~~D~~~~kv-~~L~~---------g~~pi---~epgl~~ll~~~~~~g~   74 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFA-KHGVDVLGVDINQQTI-DKLQN---------GQISI---EEPGLQEVYEEVLSSGK   74 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHT---------TCCSS---CCTTHHHHHHHHHHTTC
T ss_pred             ccCCccEEEeeCHHHHHHHHHHH-HCCCEEEEEECCHHHH-HHHHC---------CCCCc---CCCCHHHHHHhhcccCc
Confidence            46889999999999999999985 6799999999987543 22211         11110   11122222         


Q ss_pred             ------hhcCCEEEEccCCCcccc---------ccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022672          142 ------LREADVISLHPVLDKTTY---------HLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL  194 (294)
Q Consensus       142 ------l~~aDiV~l~~Plt~~t~---------~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL  194 (294)
                            +++||+|++|+|. +...         .+.  .+...+.|++|+++|+.|.-.+-..+.+.+.+
T Consensus        75 l~~ttd~~~aDvvii~VpT-p~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i  143 (431)
T 3ojo_A           75 LKVSTTPEASDVFIIAVPT-PNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPV  143 (431)
T ss_dssp             EEEESSCCCCSEEEECCCC-CBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHH
T ss_pred             eEEeCchhhCCEEEEEeCC-CccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHH
Confidence                  3579999999994 4321         122  24567789999999999988877777777654

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.32  E-value=6.9e-07  Score=79.44  Aligned_cols=96  Identities=10%  Similarity=0.078  Sum_probs=64.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc--cc-cccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TW-KRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~l~ell~~aDiV~l  150 (294)
                      ++|+|||+|.||..+|..| ...|.+|++||++.... +.        +...+....  .. ....+ .+.++++|+|++
T Consensus         1 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~r~~~~~-~~--------l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~   69 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTAL-CKQGHEVQGWLRVPQPY-CS--------VNLVETDGSIFNESLTAND-PDFLATSDLLLV   69 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCCSE-EE--------EEEECTTSCEEEEEEEESC-HHHHHTCSEEEE
T ss_pred             CeEEEECcCHHHHHHHHHH-HhCCCCEEEEEcCccce-ee--------EEEEcCCCceeeeeeeecC-ccccCCCCEEEE
Confidence            3799999999999999998 46789999999876432 11        111110000  00 01233 467789999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      ++|.. .+..++ ++....+++++++|++..|
T Consensus        70 ~v~~~-~~~~v~-~~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           70 TLKAW-QVSDAV-KSLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             CSCGG-GHHHHH-HHHHTTSCTTSCEEEECSS
T ss_pred             EecHH-hHHHHH-HHHHhhCCCCCEEEEecCC
Confidence            99953 444444 4556678899999998665

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.31  E-value=1.6e-06  Score=75.77  Aligned_cols=69  Identities=10%  Similarity=0.149  Sum_probs=55.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||.++|+.| +..|.+|++||+.                                ++ +++||  ++++|
T Consensus         7 mkI~IIG~G~~G~sLA~~L-~~~G~~V~~~~~~--------------------------------~~-~~~aD--ilavP   50 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKL-DSVGHYVTVLHAP--------------------------------ED-IRDFE--LVVID   50 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHH-HHTTCEEEECSSG--------------------------------GG-GGGCS--EEEEC
T ss_pred             cEEEEEeeCHHHHHHHHHH-HHCCCEEEEecCH--------------------------------HH-hccCC--EEEEc
Confidence            5899999999999999998 5779999999762                                11 46799  88899


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcC
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .. ....++ ++....+++++++|+++
T Consensus        51 ~~-ai~~vl-~~l~~~l~~g~ivvd~s   75 (232)
T 3dfu_A           51 AH-GVEGYV-EKLSAFARRGQMFLHTS   75 (232)
T ss_dssp             SS-CHHHHH-HHHHTTCCTTCEEEECC
T ss_pred             HH-HHHHHH-HHHHHhcCCCCEEEEEC
Confidence            53 555555 56667789999999985

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.29  E-value=2.9e-06  Score=77.67  Aligned_cols=100  Identities=16%  Similarity=0.256  Sum_probs=64.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ..+|+|||+|.||..+|..|+ ..|.+|++|+++.... +.+.+. +......+ .........++++ ++.+|+|++++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~-~~G~~V~~~~r~~~~~-~~l~~~-g~~~~~~~-~~~~~~~~~~~~~-~~~aDvVil~v   88 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLH-ENGEEVILWARRKEIV-DLINVS-HTSPYVEE-SKITVRATNDLEE-IKKEDILVIAI   88 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSHHHH-HHHHHH-SCBTTBTT-CCCCSEEESCGGG-CCTTEEEEECS
T ss_pred             CCcEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHH-HHHHHh-CCcccCCC-CeeeEEEeCCHHH-hcCCCEEEEEC
Confidence            357999999999999999984 6789999999975432 221111 00000000 0001233457778 88999999999


Q ss_pred             CCCccccccccHHHHhcCC-CCcEEEEcCCCc
Q 022672          153 VLDKTTYHLINKERLATMK-KEAILVNCSRGP  183 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk-~gailIN~aRG~  183 (294)
                      | +..+..     .+..++ ++.++|+++.|-
T Consensus        89 k-~~~~~~-----v~~~l~~~~~~vv~~~nGi  114 (335)
T 1z82_A           89 P-VQYIRE-----HLLRLPVKPSMVLNLSKGI  114 (335)
T ss_dssp             C-GGGHHH-----HHTTCSSCCSEEEECCCCC
T ss_pred             C-HHHHHH-----HHHHhCcCCCEEEEEeCCC
Confidence            9 344433     333344 789999998763

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.29  E-value=1.7e-06  Score=75.45  Aligned_cols=97  Identities=24%  Similarity=0.258  Sum_probs=71.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEE-EEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~  151 (294)
                      .+|||||+|.||+.+++.|. .-|+++ .+||+....  +               .     ...++++++ .++|+|++|
T Consensus         1 m~vgiIG~G~mG~~~~~~l~-~~g~~lv~v~d~~~~~--~---------------~-----~~~~~~~l~~~~~DvVv~~   57 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLE-RNGFEIAAILDVRGEH--E---------------K-----MVRGIDEFLQREMDVAVEA   57 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEEECSSCCC--T---------------T-----EESSHHHHTTSCCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCCEEEEEEecCcch--h---------------h-----hcCCHHHHhcCCCCEEEEC
Confidence            37999999999999999974 678887 588876321  0               0     246899999 699999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  198 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~---~aL~~aL~~g~  198 (294)
                      +|.. ...    +.....++.|..+|..+.+..-+.   +.|.++.++..
T Consensus        58 ~~~~-~~~----~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g  102 (236)
T 2dc1_A           58 ASQQ-AVK----DYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTG  102 (236)
T ss_dssp             SCHH-HHH----HHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHC
T ss_pred             CCHH-HHH----HHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcC
Confidence            9932 111    223456788999999988877666   56777766543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.29  E-value=5e-06  Score=75.20  Aligned_cols=115  Identities=16%  Similarity=0.165  Sum_probs=74.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.|++++|+|.|.+|++++..| ...|+ +|++++++.... +.+.+.+       +..........++.+.+.++|+|
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L-~~~G~~~V~v~nR~~~ka-~~la~~~-------~~~~~~~~~~~~~~~~~~~aDiv  208 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSL-LSTAAERIDMANRTVEKA-ERLVREG-------DERRSAYFSLAEAETRLAEYDII  208 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECSSHHHH-HHHHHHS-------CSSSCCEECHHHHHHTGGGCSEE
T ss_pred             CCCCCEEEEECcHHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHh-------hhccCceeeHHHHHhhhccCCEE
Confidence            57899999999999999999998 57898 999999986542 2222211       10000111113566778999999


Q ss_pred             EEccCCCcccc--c-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672          149 SLHPVLDKTTY--H-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       149 ~l~~Plt~~t~--~-li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  198 (294)
                      +.++|......  . .++   ...++++.+++|++... .... |.+..++..
T Consensus       209 In~t~~~~~~~~~~~~i~---~~~l~~~~~v~D~~y~P-~~T~-ll~~A~~~G  256 (297)
T 2egg_A          209 INTTSVGMHPRVEVQPLS---LERLRPGVIVSDIIYNP-LETK-WLKEAKARG  256 (297)
T ss_dssp             EECSCTTCSSCCSCCSSC---CTTCCTTCEEEECCCSS-SSCH-HHHHHHHTT
T ss_pred             EECCCCCCCCCCCCCCCC---HHHcCCCCEEEEcCCCC-CCCH-HHHHHHHCc
Confidence            99999654211  1 133   24578899999998743 3333 655555543

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.27  E-value=6.8e-06  Score=74.93  Aligned_cols=95  Identities=19%  Similarity=0.309  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ..++++|||.|.+|+..++.|...++ -+|.+||++ +.  +.+.+.+...   .+   ...... ++++.+++||+|++
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a--~~la~~l~~~---~g---~~~~~~-~~~eav~~aDIVi~  189 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-AS--PEILERIGRR---CG---VPARMA-APADIAAQADIVVT  189 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CC--HHHHHHHHHH---HT---SCEEEC-CHHHHHHHCSEEEE
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HH--HHHHHHHHHh---cC---CeEEEe-CHHHHHhhCCEEEE
Confidence            35789999999999999998754444 479999998 32  2222211110   01   112234 89999999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      |+|.+   ..++..   ..++||+++++++..
T Consensus       190 aT~s~---~pvl~~---~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          190 ATRST---TPLFAG---QALRAGAFVGAIGSS  215 (313)
T ss_dssp             CCCCS---SCSSCG---GGCCTTCEEEECCCS
T ss_pred             ccCCC---CcccCH---HHcCCCcEEEECCCC
Confidence            99853   455553   458999999999754

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.24  E-value=7.3e-07  Score=72.30  Aligned_cols=101  Identities=10%  Similarity=0.162  Sum_probs=73.5

Q ss_pred             CCEEEEEcC----ChHHHHHHHHHhhcCCCEEEEEcCCc--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           73 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        73 gktvGIIGl----G~IG~~vA~~L~~~~g~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      -++|+|||+    |.+|..+++.| ...|++|+.+|+..  ...                   .+...+.+++|+....|
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L-~~~G~~v~~vnp~~~g~~i-------------------~G~~~~~sl~el~~~~D   72 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYL-LDQGYHVIPVSPKVAGKTL-------------------LGQQGYATLADVPEKVD   72 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHH-HHHTCCEEEECSSSTTSEE-------------------TTEECCSSTTTCSSCCS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHH-HHCCCEEEEeCCccccccc-------------------CCeeccCCHHHcCCCCC
Confidence            567999999    89999999998 56778898888865  210                   12334567888888999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ++++++| .+....++. +..+ ...++++++.+  ..  ++++.+.+++..+.
T Consensus        73 lvii~vp-~~~v~~v~~-~~~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi~  119 (145)
T 2duw_A           73 MVDVFRN-SEAAWGVAQ-EAIA-IGAKTLWLQLG--VI--NEQAAVLAREAGLS  119 (145)
T ss_dssp             EEECCSC-STHHHHHHH-HHHH-HTCCEEECCTT--CC--CHHHHHHHHTTTCE
T ss_pred             EEEEEeC-HHHHHHHHH-HHHH-cCCCEEEEcCC--hH--HHHHHHHHHHcCCE
Confidence            9999999 466666663 3444 56677777763  22  77888888877664

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.24  E-value=1.9e-06  Score=77.36  Aligned_cols=117  Identities=18%  Similarity=0.199  Sum_probs=70.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCC-CccccccCCHHHHhh---cCCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLR---EADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~---~aDiV~  149 (294)
                      ++|+|||+|.||..+|..| ...|.+|++||++.... +.+.+. +......... .... ...+.+++.+   ++|+|+
T Consensus         4 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~r~~~~~-~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi   79 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIML-HQGGNDVTLIDQWPAHI-EAIRKN-GLIADFNGEEVVANL-PIFSPEEIDHQNEQVDLII   79 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHH-CEEEEETTEEEEECC-CEECGGGCCTTSCCCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHH-HhCCCcEEEEECCHHHH-HHHHhC-CEEEEeCCCeeEecc-eeecchhhcccCCCCCEEE
Confidence            5899999999999999998 46789999999876432 221111 0000000000 0000 0112334444   899999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      +++|. ..+..++ ++....+++++++|+++.|- -..+.+.+.+.+.
T Consensus        80 ~~v~~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~  124 (316)
T 2ew2_A           80 ALTKA-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKE  124 (316)
T ss_dssp             ECSCH-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGG
T ss_pred             EEecc-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCc
Confidence            99993 4444444 45556788999999998653 2345555555443

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.21  E-value=8.3e-06  Score=75.50  Aligned_cols=99  Identities=17%  Similarity=0.228  Sum_probs=68.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ..++++|||.|.+|+.+++.|....+ .+|.+||++.... +.+.+.+.    ..  .........+++++++++|+|++
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a-~~la~~~~----~~--~g~~~~~~~~~~eav~~aDiVi~  200 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLAT-AKLIANLK----EY--SGLTIRRASSVAEAVKGVDIITT  200 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHHT----TC--TTCEEEECSSHHHHHTTCSEEEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHH-HHHHHHHH----hc--cCceEEEeCCHHHHHhcCCEEEE
Confidence            46789999999999999987643444 5899999986542 33332221    00  01122345789999999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |+|.. ....++..   +.+++|..++.++.
T Consensus       201 aTps~-~~~pvl~~---~~l~~G~~V~~vgs  227 (350)
T 1x7d_A          201 VTADK-AYATIITP---DMLEPGMHLNAVGG  227 (350)
T ss_dssp             CCCCS-SEEEEECG---GGCCTTCEEEECSC
T ss_pred             eccCC-CCCceecH---HHcCCCCEEEECCC
Confidence            99964 23445543   46789999999985

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.19  E-value=8.8e-07  Score=79.07  Aligned_cols=88  Identities=14%  Similarity=0.197  Sum_probs=54.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEE-EEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|||||+|.||+.+|+.|+ .. .+| .+||++.... +.+.+.+       +.      ...+++++++++|+|++++
T Consensus         3 m~I~iIG~G~mG~~la~~l~-~~-~~v~~v~~~~~~~~-~~~~~~~-------g~------~~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLK-DR-YEIGYILSRSIDRA-RNLAEVY-------GG------KAATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC------CCCEECSSHHHH-HHHHHHT-------CC------CCCSSCCCCC---CEEECS
T ss_pred             ceEEEEeCCHHHHHHHHHHH-Hc-CcEEEEEeCCHHHH-HHHHHHc-------CC------ccCCHHHHHhcCCEEEEeC
Confidence            36999999999999999874 44 788 4899876542 2211111       11      2346677788999999999


Q ss_pred             CCCccccccccHHHHhcC-CCCcEEEEcCCCc
Q 022672          153 VLDKTTYHLINKERLATM-KKEAILVNCSRGP  183 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~m-k~gailIN~aRG~  183 (294)
                      |... .     .+.+..+ +++.++|+++-+-
T Consensus        67 ~~~~-~-----~~v~~~l~~~~~ivi~~s~~~   92 (276)
T 2i76_A           67 PDRY-I-----KTVANHLNLGDAVLVHCSGFL   92 (276)
T ss_dssp             CTTT-H-----HHHHTTTCCSSCCEEECCSSS
T ss_pred             ChHH-H-----HHHHHHhccCCCEEEECCCCC
Confidence            9432 2     3444444 6889999998553

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.10  E-value=8.6e-06  Score=74.12  Aligned_cols=119  Identities=17%  Similarity=0.136  Sum_probs=75.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhh--cCCCCc-cccccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA--NGEQPV-TWKRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~ell~~aDiV~l  150 (294)
                      ++|+|||.|.||..+|..|+ ..|.+|..|++...   +...+ .+-.+..  .+.... ......+++++.+.+|+|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~-~~g~~V~~~~r~~~---~~i~~-~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVil   77 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLA-KTGHCVSVVSRSDY---ETVKA-KGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLL   77 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HTTCEEEEECSTTH---HHHHH-HCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCChH---HHHHh-CCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEE
Confidence            58999999999999999984 67899999998652   22111 0000110  010000 01123567777668999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ++|. .++...+ ++....+++++++|.+.-| +-.++.|.+.+...++.
T Consensus        78 avK~-~~~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           78 CIKV-VEGADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             CCCC-CTTCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred             ecCC-CChHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence            9994 3444443 4555677889999988776 32346677766554443

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.10  E-value=3.1e-05  Score=70.76  Aligned_cols=148  Identities=13%  Similarity=0.106  Sum_probs=92.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHH---HHHhhhhhhhhhcCCC--C--c-----cccccCCHHH
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE---KFVTAYGQFLKANGEQ--P--V-----TWKRASSMDE  140 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---~~~~~~~~~~~~~~~~--~--~-----~~~~~~~l~e  140 (294)
                      -++|+|||.|.||+.+|..++ ..|++|+.||+.+.....   .....+.. +...+..  .  .     ......++++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a-~~G~~V~l~D~~~~~l~~~~~~i~~~l~~-~~~~g~~~~~~~~~~~l~~i~~~~~l~~   83 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFA-SGGFRVKLYDIEPRQITGALENIRKEMKS-LQQSGSLKGSLSAEEQLSLISSCTNLAE   83 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHH-HTTCCEEEECSCHHHHHHHHHHHHHHHHH-HHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHHH-HHHcCCCCCccCHHHHHhhcccccchHh
Confidence            458999999999999999974 789999999998754221   11111111 1111111  0  0     1234578999


Q ss_pred             HhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCC
Q 022672          141 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM  220 (294)
Q Consensus       141 ll~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~  220 (294)
                      .+++||+|+=++|-+-+.+.-+-++.=+.++++++|-.-+.+  +....|.+.+.. .=+..++=-|.+  .+--||.+ 
T Consensus        84 a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~HffNP--~~~m~LVE-  157 (319)
T 3ado_A           84 AVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPVNP--PYYIPLVE-  157 (319)
T ss_dssp             HTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEECSS--TTTCCEEE-
T ss_pred             HhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCCCC--ccccchHH-
Confidence            999999999999987777766666777788999988654333  455666666543 233444433332  22224443 


Q ss_pred             CCeEEccCCC
Q 022672          221 KNAIVVPHIA  230 (294)
Q Consensus       221 ~nviiTPHia  230 (294)
                        |+-+|+.+
T Consensus       158 --iv~g~~Ts  165 (319)
T 3ado_A          158 --LVPHPETS  165 (319)
T ss_dssp             --EEECTTCC
T ss_pred             --hcCCCCCc
Confidence              55555544

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.10  E-value=6e-06  Score=75.21  Aligned_cols=116  Identities=18%  Similarity=0.255  Sum_probs=69.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhc-CCCCccccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      -..++|+|||.|.||..+|..|+ ..|.+|..| ++... .+...+. +...... ...........++++ ++.+|+|+
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~-~~G~~V~l~-~~~~~-~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi   91 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLA-RAGHEVILI-ARPQH-VQAIEAT-GLRLETQSFDEQVKVSASSDPSA-VQGADLVL   91 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHH-HTTCEEEEE-CCHHH-HHHHHHH-CEEEECSSCEEEECCEEESCGGG-GTTCSEEE
T ss_pred             ccCCcEEEECcCHHHHHHHHHHH-HCCCeEEEE-EcHhH-HHHHHhC-CeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEE
Confidence            45578999999999999999984 678999999 65432 2222110 1000000 000011112345554 58999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  194 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL  194 (294)
                      +++|.. ++..++ ++....+++++++|.+.-|=- .++.|.+.+
T Consensus        92 lavk~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi~-~~~~l~~~~  133 (318)
T 3hwr_A           92 FCVKST-DTQSAA-LAMKPALAKSALVLSLQNGVE-NADTLRSLL  133 (318)
T ss_dssp             ECCCGG-GHHHHH-HHHTTTSCTTCEEEEECSSSS-HHHHHHHHC
T ss_pred             EEcccc-cHHHHH-HHHHHhcCCCCEEEEeCCCCC-cHHHHHHHc
Confidence            999943 444444 445566788999999877732 224555555

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.10  E-value=1.7e-05  Score=73.96  Aligned_cols=104  Identities=13%  Similarity=0.220  Sum_probs=77.0

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCC----chhH---HHHHHhhhhhhhhhcCCCCccccccCCHH
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY----QATR---LEKFVTAYGQFLKANGEQPVTWKRASSMD  139 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  139 (294)
                      |..+.+.+|.|+|.|..|..+|+.| .+.|. +|+.+|++    ....   ...+...+...    .. .  .....+|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll-~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~----~~-~--~~~~~~L~  258 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFL-LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARI----TN-P--ERLSGDLE  258 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHH-HHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHT----SC-T--TCCCSCHH
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHH-HhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHh----hh-c--cCchhhHH
Confidence            3468999999999999999999997 57898 89999987    3221   11112222111    11 1  11246899


Q ss_pred             HHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          140 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       140 ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                      |.++++|+++-+..     -++++++.++.|+++++++.+|+...
T Consensus       259 eav~~ADVlIG~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt~  298 (388)
T 1vl6_A          259 TALEGADFFIGVSR-----GNILKPEWIKKMSRKPVIFALANPVP  298 (388)
T ss_dssp             HHHTTCSEEEECSC-----SSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred             HHHccCCEEEEeCC-----CCccCHHHHHhcCCCCEEEEcCCCCC
Confidence            99999999987742     38999999999999999999998654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.08  E-value=2.2e-06  Score=71.36  Aligned_cols=98  Identities=11%  Similarity=0.112  Sum_probs=61.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH--h
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV--L  142 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el--l  142 (294)
                      .++.+++|+|+|+|.+|+.+|+.| +.. |.+|+++|+++... +...        ..+.... .-...+   ++++  +
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L-~~~~g~~V~vid~~~~~~-~~~~--------~~g~~~~-~gd~~~~~~l~~~~~~  103 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDEL-RARYGKISLGIEIREEAA-QQHR--------SEGRNVI-SGDATDPDFWERILDT  103 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHH-HHHHCSCEEEEESCHHHH-HHHH--------HTTCCEE-ECCTTCHHHHHTBCSC
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHH-HhccCCeEEEEECCHHHH-HHHH--------HCCCCEE-EcCCCCHHHHHhccCC
Confidence            357788999999999999999998 577 99999999876542 2111        1111100 001122   3444  6


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      .++|+|++++|....+..+  ...++.+.+...+|..
T Consensus       104 ~~ad~vi~~~~~~~~~~~~--~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          104 GHVKLVLLAMPHHQGNQTA--LEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             CCCCEEEECCSSHHHHHHH--HHHHHHTTCCSEEEEE
T ss_pred             CCCCEEEEeCCChHHHHHH--HHHHHHHCCCCEEEEE
Confidence            7899999999854333322  2345566666666654

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.07  E-value=2.9e-06  Score=77.78  Aligned_cols=103  Identities=15%  Similarity=0.132  Sum_probs=65.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhc-CCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .++|+|||.|.||..+|..|+ ..|.+|.+|++. . ..+...+ .+...... +..........++++ +..+|+|+++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~-~~g~~V~~~~r~-~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vila   77 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLA-LAGEAINVLARG-A-TLQALQT-AGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVA   77 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHH-HTTCCEEEECCH-H-HHHHHHH-TCEEEEETTEEEEECCEEESCHHH-HCCCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCEEEEEECh-H-HHHHHHH-CCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEe
Confidence            368999999999999999984 678899999984 2 2222211 11000000 000011122356776 5899999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      +|. .++..++ ++....+++++++|.+..|
T Consensus        78 vk~-~~~~~~~-~~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           78 VKA-PALESVA-AGIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             CCH-HHHHHHH-GGGSSSCCTTCEEEECCSS
T ss_pred             CCc-hhHHHHH-HHHHhhCCCCCEEEEECCC
Confidence            994 4444443 3344557789999999888

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.05  E-value=1.3e-05  Score=75.61  Aligned_cols=96  Identities=20%  Similarity=0.250  Sum_probs=68.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  144 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  144 (294)
                      -|.||||+|||||.-|++=|..| +-.|++|++--+...     +.....        ..     .++ .+.+.+|+.++
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNL-RDSGv~V~Vglr~~s~~e~~~S~~~A--------~~-----~Gf-~v~~~~eA~~~   98 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRKA--------TE-----NGF-KVGTYEELIPQ   98 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHH-HHTTCEEEEEECHHHHHTTCHHHHHH--------HH-----TTC-EEEEHHHHGGG
T ss_pred             HHcCCEEEEeCCChHhHHHHhHH-HhcCCcEEEEeCCCCcccccchHHHH--------HH-----CCC-EecCHHHHHHh
Confidence            58999999999999999999998 789999876543211     111110        11     122 23579999999


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      ||+|.+.+|.. ....++ ++....||+|+.|. .|.|=
T Consensus        99 ADvV~~L~PD~-~q~~vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A           99 ADLVINLTPDK-QHSDVV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             CSEEEECSCGG-GHHHHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             CCEEEEeCChh-hHHHHH-HHHHhhCCCCCEEE-ecCcc
Confidence            99999999943 333344 57889999999887 55553

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.05  E-value=2.4e-05  Score=63.32  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=60.5

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhh-hcCCCCccccccCC---HHHH-h
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTWKRASS---MDEV-L  142 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---l~el-l  142 (294)
                      .....+++|.|+|+|.+|+.+|+.| +..|.+|+++|+++... +.        +. ..+.... .....+   +.+. +
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L-~~~g~~V~vid~~~~~~-~~--------~~~~~g~~~~-~~d~~~~~~l~~~~~   82 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLA-SSSGHSVVVVDKNEYAF-HR--------LNSEFSGFTV-VGDAAEFETLKECGM   82 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGGG-GG--------SCTTCCSEEE-ESCTTSHHHHHTTTG
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HH--------HHhcCCCcEE-EecCCCHHHHHHcCc
Confidence            3467889999999999999999997 67899999999876432 11        11 1110000 001112   2232 5


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      .++|+|++++|.. +... .-......+.+...+|-..++.
T Consensus        83 ~~ad~Vi~~~~~~-~~~~-~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           83 EKADMVFAFTNDD-STNF-FISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             GGCSEEEECSSCH-HHHH-HHHHHHHHTSCCSEEEEECSSG
T ss_pred             ccCCEEEEEeCCc-HHHH-HHHHHHHHHCCCCeEEEEECCH
Confidence            7899999999842 2221 2233444445555666555544

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.05  E-value=1.7e-05  Score=70.83  Aligned_cols=94  Identities=17%  Similarity=0.066  Sum_probs=61.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      |+++.|||.|.+|++++..| ...|.+|++++|+..+.. .+. .+       +   ...   .+++++ .++|+|+.++
T Consensus       118 ~k~vlvlGaGGaaraia~~L-~~~G~~v~V~nRt~~ka~-~la-~~-------~---~~~---~~~~~l-~~~DiVInaT  180 (269)
T 3phh_A          118 YQNALILGAGGSAKALACEL-KKQGLQVSVLNRSSRGLD-FFQ-RL-------G---CDC---FMEPPK-SAFDLIINAT  180 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCTTHH-HHH-HH-------T---CEE---ESSCCS-SCCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HHH-HC-------C---CeE---ecHHHh-ccCCEEEEcc
Confidence            89999999999999999998 577899999999876432 211 11       1   111   122232 3899999999


Q ss_pred             CCCccccccccHHHHh-cCCCCcEEEEcCCCc
Q 022672          153 VLDKTTYHLINKERLA-TMKKEAILVNCSRGP  183 (294)
Q Consensus       153 Plt~~t~~li~~~~l~-~mk~gailIN~aRG~  183 (294)
                      |..-.....++.+.+. .++++.+++|+....
T Consensus       181 p~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P  212 (269)
T 3phh_A          181 SASLHNELPLNKEVLKGYFKEGKLAYDLAYGF  212 (269)
T ss_dssp             TTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS
T ss_pred             cCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC
Confidence            9653322234444222 456667777776654

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=98.05  E-value=4.7e-06  Score=75.06  Aligned_cols=115  Identities=14%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcC-----C-CEEEEEcCCchhHHHHHHhhhhhhhhhc-CC-CCccccccCCHHHHhhcC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGF-----K-MNLIYYDLYQATRLEKFVTAYGQFLKAN-GE-QPVTWKRASSMDEVLREA  145 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~-----g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~ell~~a  145 (294)
                      ++|+|||+|.||..+|..|+ ..     | .+|++|++ . ...+.+.+..+...... +. .........+. +.+..+
T Consensus         9 m~I~iiG~G~mG~~~a~~L~-~~~~~~~g~~~V~~~~r-~-~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~   84 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLA-LRAAATDGLLEVSWIAR-G-AHLEAIRAAGGLRVVTPSRDFLARPTCVTDNP-AEVGTV   84 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHHHHTTSSEEEEEECC-H-HHHHHHHHHTSEEEECSSCEEEECCSEEESCH-HHHCCE
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCccccCCCCCEEEEEc-H-HHHHHHHhcCCeEEEeCCCCeEEecceEecCc-cccCCC
Confidence            47999999999999999985 45     7 89999998 4 33333221011111000 00 00000111233 457899


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCH-HHHHHHHHc
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE-VALVEHLKQ  196 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~-~aL~~aL~~  196 (294)
                      |+|++++|. ..+..++ ++....+++++++|.+.-|  +.. +.|.+.+..
T Consensus        85 D~vil~vk~-~~~~~v~-~~i~~~l~~~~~iv~~~nG--~~~~~~l~~~l~~  132 (317)
T 2qyt_A           85 DYILFCTKD-YDMERGV-AEIRPMIGQNTKILPLLNG--ADIAERMRTYLPD  132 (317)
T ss_dssp             EEEEECCSS-SCHHHHH-HHHGGGEEEEEEEEECSCS--SSHHHHHTTTSCT
T ss_pred             CEEEEecCc-ccHHHHH-HHHHhhcCCCCEEEEccCC--CCcHHHHHHHCCC
Confidence            999999994 3344443 3444567788999998776  343 455555533

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.04  E-value=2.4e-05  Score=61.35  Aligned_cols=95  Identities=12%  Similarity=0.178  Sum_probs=56.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH---H-hhcCCEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE---V-LREADVI  148 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e---l-l~~aDiV  148 (294)
                      +++|+|+|+|.+|+.+|+.| ...|.+|+++|++.... +.+...+       +.... .....+.+.   . +.++|+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~~~~-------~~~~~-~~d~~~~~~l~~~~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDIC-KKASAEI-------DALVI-NGDCTKIKTLEDAGIEDADMY   73 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHC-------SSEEE-ESCTTSHHHHHHTTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHhc-------CcEEE-EcCCCCHHHHHHcCcccCCEE
Confidence            47899999999999999998 56799999999876432 2211110       10000 001112222   2 5789999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      ++++|.. ++ ...-....+.++++.+++-+
T Consensus        74 i~~~~~~-~~-~~~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           74 IAVTGKE-EV-NLMSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             EECCSCH-HH-HHHHHHHHHHTTCCCEEEEC
T ss_pred             EEeeCCc-hH-HHHHHHHHHHcCCCEEEEEe
Confidence            9999843 22 22223445557777666644

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.03  E-value=3.5e-05  Score=70.36  Aligned_cols=93  Identities=15%  Similarity=0.224  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ..++++|||.|.+|+.+++.|++..+ -+|.+||++.... +.+.+.++.    .+   .... ..++++++ ++|+|++
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a-~~la~~~~~----~~---~~~~-~~~~~e~v-~aDvVi~  193 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAA-KKFVSYCED----RG---ISAS-VQPAEEAS-RCDVLVT  193 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHHHH----TT---CCEE-ECCHHHHT-SSSEEEE
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHH-HHHHHHHHh----cC---ceEE-ECCHHHHh-CCCEEEE
Confidence            45789999999999999998754344 5799999987542 333332211    11   1223 57899999 9999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      |+|..   ..++..   ..+++|..+++++
T Consensus       194 aTp~~---~pv~~~---~~l~~G~~V~~ig  217 (322)
T 1omo_A          194 TTPSR---KPVVKA---EWVEEGTHINAIG  217 (322)
T ss_dssp             CCCCS---SCCBCG---GGCCTTCEEEECS
T ss_pred             eeCCC---CceecH---HHcCCCeEEEECC
Confidence            99953   345543   4678999999995

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.02  E-value=2e-05  Score=73.90  Aligned_cols=103  Identities=13%  Similarity=0.030  Sum_probs=62.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEc---CCchhHHHHHHhhhhhhhh--hcCC--CC--cccc-ccCCHHHHhh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD---LYQATRLEKFVTAYGQFLK--ANGE--QP--VTWK-RASSMDEVLR  143 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d---~~~~~~~~~~~~~~~~~~~--~~~~--~~--~~~~-~~~~l~ell~  143 (294)
                      ++|+|||.|.||..+|..|++..|.+|++||   ++... .+......+-.+.  ..+.  ..  .... ...++++.++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   81 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAER-WTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS   81 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHH-HHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHH-HHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence            4799999999999999998432589999999   53322 1211110000000  0000  00  0011 3457888899


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      .+|+|++++|. .....++ ++....+++++++|..
T Consensus        82 ~aD~Vilav~~-~~~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           82 GADVVILTVPA-FAHEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             TCSEEEECSCG-GGHHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCCEEEEeCch-HHHHHHH-HHHHhhCCCCcEEEEc
Confidence            99999999994 3333333 4445567889999984

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.95  E-value=5e-05  Score=72.28  Aligned_cols=148  Identities=14%  Similarity=0.086  Sum_probs=85.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh--------hhhhhhcCCCCccccccCCHHHHhh
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLR  143 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~  143 (294)
                      +-++|+|||+|-+|..+|..|+ ..|.+|+++|...... +....+.        .+.+.... ..-......+.++.++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A-~~G~~V~g~Did~~kV-~~ln~G~~pi~Epgl~ell~~~~-~~g~l~~tt~~~~ai~   96 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFA-LLGHRVVGYDVNPSIV-ERLRAGRPHIYEPGLEEALGRAL-SSGRLSFAESAEEAVA   96 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHTCEEEEECSCHHHH-HHHHTTCCSSCCTTHHHHHHHHH-HTTCEEECSSHHHHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHH-hCCCcEEEEECCHHHH-HHHHCCCCCCCCCCHHHHHHHHH-HcCCeeEEcCHHHHHh
Confidence            4468999999999999999884 6799999999876542 2211100        00000000 0001223467889999


Q ss_pred             cCCEEEEccCCCcccc-cccc--------HHHHhcCC---CCcEEEEcCCCcccCHHHHHH-HHHcCCcceEEee-CCCC
Q 022672          144 EADVISLHPVLDKTTY-HLIN--------KERLATMK---KEAILVNCSRGPVIDEVALVE-HLKQNPMFRVGLD-VFED  209 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~-~li~--------~~~l~~mk---~gailIN~aRG~~vd~~aL~~-aL~~g~i~ga~lD-V~~~  209 (294)
                      +||++++|+| ||... +-.|        +...+.|+   ++.++|.-|+-.+=-.+.+.. .|.+.. .+.-.+ ++.+
T Consensus        97 ~ad~~~I~Vp-TP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~~~P  174 (444)
T 3vtf_A           97 ATDATFIAVG-TPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVASNP  174 (444)
T ss_dssp             TSSEEEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEEECC
T ss_pred             cCCceEEEec-CCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceeecCc
Confidence            9999999998 44322 1111        22333444   678999999877755555543 333322 222222 2566


Q ss_pred             CCCCC-C---CccCCCCeE
Q 022672          210 EPYMK-P---GLSEMKNAI  224 (294)
Q Consensus       210 EP~~~-~---~L~~~~nvi  224 (294)
                      |-+.. .   .+...++|+
T Consensus       175 Erl~eG~a~~d~~~~~riV  193 (444)
T 3vtf_A          175 EFLREGSALEDFFKPDRIV  193 (444)
T ss_dssp             CCCCTTSHHHHHHSCSCEE
T ss_pred             ccccCCccccccccCCcEE
Confidence            75532 1   345556665

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.91  E-value=2.9e-05  Score=72.75  Aligned_cols=107  Identities=15%  Similarity=0.221  Sum_probs=67.9

Q ss_pred             EEEEEcCChHHHHHHHHHhhc-------CCCEEEEEcCCchhHHHHHHhhh-----hhhhhhcCCCCccccccCCHHHHh
Q 022672           75 TVGVIGAGRIGSAYARMMVEG-------FKMNLIYYDLYQATRLEKFVTAY-----GQFLKANGEQPVTWKRASSMDEVL  142 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~-------~g~~V~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~ell  142 (294)
                      +|+|||.|..|.++|+.|++.       ++.+|..|.+.+....+...+..     +......-..+.......++++.+
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            799999999999999988642       23468888765432111111100     000011111122334567899999


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      ++||+|++++| +...+.++ ++....++++..+|+++.|=
T Consensus       116 ~~ad~ii~avP-s~~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          116 KDVDIIVFNIP-HQFLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             TTCSEEEECSC-GGGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             hcCCEEEEECC-hhhhHHHH-HHhccccCCCceeEEecccc
Confidence            99999999999 33333333 45556778999999999884

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.90  E-value=1.4e-05  Score=74.72  Aligned_cols=83  Identities=29%  Similarity=0.462  Sum_probs=67.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCC---EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      ...+|.|||. |..|+..++.+ +++|+   .|..+|.+....               +.         .+++ +.++|+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a-~~lGa~~~~V~v~D~~~~~~---------------g~---------~~~~-i~~aDi  266 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLL-HKVGIPDANILKWDIKETSR---------------GG---------PFDE-IPQADI  266 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHH-HHTTCCGGGEEEECHHHHTT---------------CS---------CCTH-HHHSSE
T ss_pred             CCCeEEEEcCCCHHHHHHHHHH-HhCCCCcCceEEeecccccc---------------CC---------chhh-HhhCCE
Confidence            4567999999 99999999985 79998   899999754210               10         1233 569999


Q ss_pred             EEEccCCCccccccccHHHHhcC-CCCcEEEEcC
Q 022672          148 ISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  180 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~m-k~gailIN~a  180 (294)
                      |+.|+......-.+|+++.++.| |||+++||+|
T Consensus       267 vIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          267 FINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             EEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred             EEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence            99999987777889999999999 9999999996

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.88  E-value=4.6e-05  Score=69.03  Aligned_cols=119  Identities=13%  Similarity=0.150  Sum_probs=73.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhc-CCCCc-cccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV-TWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ++|+|||.|.||..+|..|+ ..|.+|..|++...   +...+ .+..+... +.... ......+.++ +..+|+|+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~-~~g~~V~~~~r~~~---~~i~~-~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vila   76 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQ-RSGEDVHFLLRRDY---EAIAG-NGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVG   76 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHH-HTSCCEEEECSTTH---HHHHH-TCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHH-HCCCeEEEEEcCcH---HHHHh-CCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEe
Confidence            57999999999999999984 67889999998652   22111 11111100 00000 0112245655 6799999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  201 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g  201 (294)
                      +|. ..+...+ ++....+++++++|.+.-| +-.++.|.+.+...++.+
T Consensus        77 vk~-~~~~~~l-~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~  123 (312)
T 3hn2_A           77 LKT-FANSRYE-ELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIG  123 (312)
T ss_dssp             CCG-GGGGGHH-HHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEE
T ss_pred             cCC-CCcHHHH-HHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEE
Confidence            994 3344433 4555668899999999877 222556666665445444

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.85  E-value=7.7e-05  Score=67.17  Aligned_cols=108  Identities=20%  Similarity=0.315  Sum_probs=66.5

Q ss_pred             CEEEEEcCChHHHH-HHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~-vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+|||||+|.||+. .++.|.+.-+++++ ++|++.... +.+.+.+       +     ...+.++++++.+.|+|++|
T Consensus         7 ~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------~-----~~~~~~~~~ll~~~D~V~i~   73 (308)
T 3uuw_A            7 IKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKR-EKICSDY-------R-----IMPFDSIESLAKKCDCIFLH   73 (308)
T ss_dssp             CEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHH-HHHHHHH-------T-----CCBCSCHHHHHTTCSEEEEC
T ss_pred             CcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHH-HHHHHHc-------C-----CCCcCCHHHHHhcCCEEEEe
Confidence            58999999999996 88877433578887 688876542 2222222       1     12257899999999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCc-EEEE-cCCCcccCHHHHHHHHHcCCc
Q 022672          152 PVLDKTTYHLINKERLATMKKEA-ILVN-CSRGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~ga-ilIN-~aRG~~vd~~aL~~aL~~g~i  199 (294)
                      +|..  .+.-+-...   ++.|. +++. -.--.+-+.+.|.++.++..+
T Consensus        74 tp~~--~h~~~~~~a---l~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~  118 (308)
T 3uuw_A           74 SSTE--THYEIIKIL---LNLGVHVYVDKPLASTVSQGEELIELSTKKNL  118 (308)
T ss_dssp             CCGG--GHHHHHHHH---HHTTCEEEECSSSSSSHHHHHHHHHHHHHHTC
T ss_pred             CCcH--hHHHHHHHH---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence            9933  222222233   33443 4443 222334445567777766544

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.79  E-value=6.1e-05  Score=67.56  Aligned_cols=101  Identities=19%  Similarity=0.212  Sum_probs=63.1

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.|+++.|+|.|.+|++++..| ...|+ +|++++|+.... +.+.+.+..    .+  ..   ...+++++.+++|
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~a-~~la~~~~~----~~--~~---~~~~~~~l~~~aD  189 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPL-LDQQPASITVTNRTFAKA-EQLAELVAA----YG--EV---KAQAFEQLKQSYD  189 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHH-HTTCCSEEEEEESSHHHH-HHHHHHHGG----GS--CE---EEEEGGGCCSCEE
T ss_pred             CCCccCCEEEEECchHHHHHHHHHH-HhcCCCeEEEEECCHHHH-HHHHHHhhc----cC--Ce---eEeeHHHhcCCCC
Confidence            3468899999999999999999998 57896 999999986542 222222211    01  11   1124555558899


Q ss_pred             EEEEccCCCcccc-ccccHHHHhcCCCCcEEEEcCCC
Q 022672          147 VISLHPVLDKTTY-HLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       147 iV~l~~Plt~~t~-~li~~~~l~~mk~gailIN~aRG  182 (294)
                      +|+.++|..-... -.+..   ..++++.+++++.-.
T Consensus       190 iIInaTp~gm~~~~~~l~~---~~l~~~~~V~DlvY~  223 (281)
T 3o8q_A          190 VIINSTSASLDGELPAIDP---VIFSSRSVCYDMMYG  223 (281)
T ss_dssp             EEEECSCCCC----CSCCG---GGEEEEEEEEESCCC
T ss_pred             EEEEcCcCCCCCCCCCCCH---HHhCcCCEEEEecCC
Confidence            9999999643211 11222   234566666666544

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.78  E-value=2.3e-05  Score=59.53  Aligned_cols=94  Identities=18%  Similarity=0.132  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhcCCEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVI  148 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV  148 (294)
                      .+++|+|+|.|.||+.+++.| ...| .+|+++|++..... ...        ..+...  .......+++++++++|+|
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l-~~~g~~~v~~~~r~~~~~~-~~~--------~~~~~~~~~d~~~~~~~~~~~~~~d~v   73 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALL-KTSSNYSVTVADHDLAALA-VLN--------RMGVATKQVDAKDEAGLAKALGGFDAV   73 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHH-HHCSSEEEEEEESCHHHHH-HHH--------TTTCEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CcCeEEEECCCHHHHHHHHHH-HhCCCceEEEEeCCHHHHH-HHH--------hCCCcEEEecCCCHHHHHHHHcCCCEE
Confidence            467899999999999999998 5678 89999998765421 111        001000  0111123566788899999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +.++|... +..++    -...+.|...++.+
T Consensus        74 i~~~~~~~-~~~~~----~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           74 ISAAPFFL-TPIIA----KAAKAAGAHYFDLT  100 (118)
T ss_dssp             EECSCGGG-HHHHH----HHHHHTTCEEECCC
T ss_pred             EECCCchh-hHHHH----HHHHHhCCCEEEec
Confidence            99998322 12111    12234566677664

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.77  E-value=0.00015  Score=64.38  Aligned_cols=100  Identities=16%  Similarity=0.146  Sum_probs=62.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV  148 (294)
                      .+.|+++.|+|.|.+|+++++.| ...|.+|++++++.... +.+.+.++.    .+  ...   ..+++++. .++|+|
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L-~~~G~~V~v~~R~~~~~-~~la~~~~~----~~--~~~---~~~~~~~~~~~~Div  184 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSRA-EELAKLFAH----TG--SIQ---ALSMDELEGHEFDLI  184 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHH-HHHHHHTGG----GS--SEE---ECCSGGGTTCCCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHcCCEEEEEECCHHHH-HHHHHHhhc----cC--Cee---EecHHHhccCCCCEE
Confidence            57899999999999999999998 57789999999886532 222222111    00  010   12233333 589999


Q ss_pred             EEccCCCcccc-ccccHHHHhcCCCCcEEEEcCCCc
Q 022672          149 SLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       149 ~l~~Plt~~t~-~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      +.++|...... .-+..+   .++++.+++|+....
T Consensus       185 Vn~t~~~~~~~~~~i~~~---~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          185 INATSSGISGDIPAIPSS---LIHPGIYCYDMFYQK  217 (271)
T ss_dssp             EECCSCGGGTCCCCCCGG---GCCTTCEEEESCCCS
T ss_pred             EECCCCCCCCCCCCCCHH---HcCCCCEEEEeccCC
Confidence            99999543210 012222   246777788776654

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.77  E-value=0.00011  Score=68.71  Aligned_cols=188  Identities=15%  Similarity=0.176  Sum_probs=113.7

Q ss_pred             CcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcC
Q 022672           17 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF   96 (294)
Q Consensus        17 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~   96 (294)
                      .|++.|+ +.  .-+|=-+++-+++..|                     ..|..+...+|.|+|.|..|..+|+.+ .++
T Consensus       156 ~ipvf~D-Di--qGTa~V~lAall~al~---------------------l~g~~l~d~kVVi~GAGaAG~~iA~ll-~~~  210 (398)
T 2a9f_A          156 HIPVFHD-DQ--HGTAIVVLAAIFNSLK---------------------LLKKSLDEVSIVVNGGGSAGLSITRKL-LAA  210 (398)
T ss_dssp             SSCEEEH-HH--HHHHHHHHHHHHHHHH---------------------TTTCCTTSCEEEEECCSHHHHHHHHHH-HHH
T ss_pred             Ccceecc-hh--hhHHHHHHHHHHHHHH---------------------HhCCCCCccEEEEECCCHHHHHHHHHH-HHc
Confidence            5777773 21  2344445566666555                     124578899999999999999999987 688


Q ss_pred             CC-EEEEEcCCch------hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhc
Q 022672           97 KM-NLIYYDLYQA------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  169 (294)
Q Consensus        97 g~-~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~  169 (294)
                      |. +|+.+|++.-      .....+...+....   .  .  .....+|+|.++.+|+++=+-     +-+++.++.++.
T Consensus       211 Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~---~--~--~~~~~~L~eav~~ADV~IG~S-----apgl~T~EmVk~  278 (398)
T 2a9f_A          211 GATKVTVVDKFGIINEQEAAQLAPHHLDIAKVT---N--R--EFKSGTLEDALEGADIFIGVS-----APGVLKAEWISK  278 (398)
T ss_dssp             TCCEEEEEETTEECCTTCCCSCCC---CHHHHH---S--C--TTCCCSCSHHHHTTCSEEECC-----STTCCCHHHHHT
T ss_pred             CCCeEEEEECCCcccCCccccchHHHHHHhhcc---C--c--ccchhhHHHHhccCCEEEecC-----CCCCCCHHHHHh
Confidence            99 9999998730      11111111121110   0  0  012357999999999987662     368999999999


Q ss_pred             CCCCcEEEEcCCCcc-cCHHHHHHHHHcCC-cceEEeeCCCCCCCCCCCccCCCCeEEccCCCCCcH-----HHHHHHHH
Q 022672          170 MKKEAILVNCSRGPV-IDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK-----WTREGMAT  242 (294)
Q Consensus       170 mk~gailIN~aRG~~-vd~~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~t~-----~~~~~~~~  242 (294)
                      |+++++++.+|+... +..++   +.+.|+ |.+-+   -...|      -+..|+++-|=++-..-     .-.+.|..
T Consensus       279 Ma~~pIIfalsNPt~E~~pe~---a~~~g~~i~atG---rs~~p------~Q~NN~~~FPgi~~Gal~~~a~~I~d~m~~  346 (398)
T 2a9f_A          279 MAARPVIFAMANPIPEIYPDE---ALEAGAYIVGTG---RSDFP------NQINNVLAFPGIFRGALDARAKTITVEMQI  346 (398)
T ss_dssp             SCSSCEEEECCSSSCSSCHHH---HHTTTCSEEEES---CTTSS------SBCCGGGTHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             hCCCCEEEECCCCCccCCHHH---HHHhCCeEEEeC---CCCCC------CcCCceeEcchHHHHHHHcCCcCCCHHHHH
Confidence            999999999998764 22222   333355 33222   11112      35677777775541100     11244555


Q ss_pred             HHHHHHHHHHc
Q 022672          243 LAALNVLGKIK  253 (294)
Q Consensus       243 ~~~~nl~~~~~  253 (294)
                      .+++-|..+..
T Consensus       347 aAa~alA~~~~  357 (398)
T 2a9f_A          347 AAAKGIASLVP  357 (398)
T ss_dssp             HHHHHHHHTCS
T ss_pred             HHHHHHHhcCC
Confidence            56666666543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.76  E-value=6.4e-05  Score=59.83  Aligned_cols=93  Identities=14%  Similarity=0.166  Sum_probs=57.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhcCCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV~  149 (294)
                      .++.|+|+|.+|+.+|+.| +..|.+|+++|+++... +...        ..+.... .-...+   ++++ +.++|+|+
T Consensus         8 ~~viIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~~-~~~~--------~~g~~~i-~gd~~~~~~l~~a~i~~ad~vi   76 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKL-LASDIPLVVIETSRTRV-DELR--------ERGVRAV-LGNAANEEIMQLAHLECAKWLI   76 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHHH-HHHH--------HTTCEEE-ESCTTSHHHHHHTTGGGCSEEE
T ss_pred             CCEEEECcCHHHHHHHHHH-HHCCCCEEEEECCHHHH-HHHH--------HcCCCEE-ECCCCCHHHHHhcCcccCCEEE
Confidence            4699999999999999998 68899999999987542 2111        1111100 001112   2222 46899999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      +++|....+..+  ...++.+.++..+|-.
T Consensus        77 ~~~~~~~~n~~~--~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           77 LTIPNGYEAGEI--VASARAKNPDIEIIAR  104 (140)
T ss_dssp             ECCSCHHHHHHH--HHHHHHHCSSSEEEEE
T ss_pred             EECCChHHHHHH--HHHHHHHCCCCeEEEE
Confidence            999954444333  2345556666666643

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.76  E-value=0.00013  Score=65.17  Aligned_cols=76  Identities=13%  Similarity=0.088  Sum_probs=51.7

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcC
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-REA  145 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~a  145 (294)
                      +.++.||++.|+|.|.+|++++..| ...|+ +|++++|+.... +.+.+.+.       ......   .+++++- .++
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L-~~~G~~~v~i~~R~~~~a-~~la~~~~-------~~~~~~---~~~~~l~~~~~  182 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPF-LQAGPSELVIANRDMAKA-LALRNELD-------HSRLRI---SRYEALEGQSF  182 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHH-HHTCCSEEEEECSCHHHH-HHHHHHHC-------CTTEEE---ECSGGGTTCCC
T ss_pred             CCCccCCEEEEECccHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhc-------cCCeeE---eeHHHhcccCC
Confidence            3468899999999999999999998 47896 999999986542 22222211       001111   2333333 789


Q ss_pred             CEEEEccCCC
Q 022672          146 DVISLHPVLD  155 (294)
Q Consensus       146 DiV~l~~Plt  155 (294)
                      |+|+.++|..
T Consensus       183 DivInaTp~g  192 (272)
T 3pwz_A          183 DIVVNATSAS  192 (272)
T ss_dssp             SEEEECSSGG
T ss_pred             CEEEECCCCC
Confidence            9999999853

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.75  E-value=0.00044  Score=62.00  Aligned_cols=81  Identities=21%  Similarity=0.246  Sum_probs=55.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      ..+.||++.|+|.|.+|++++..| ...|+ +|+.++|+..+. +.+.+.+....   ...........++++.++++|+
T Consensus       123 ~~l~~k~vlVlGaGG~g~aia~~L-~~~G~~~v~i~~R~~~~a-~~la~~~~~~~---~~~~i~~~~~~~l~~~l~~~Di  197 (283)
T 3jyo_A          123 PNAKLDSVVQVGAGGVGNAVAYAL-VTHGVQKLQVADLDTSRA-QALADVINNAV---GREAVVGVDARGIEDVIAAADG  197 (283)
T ss_dssp             TTCCCSEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSSHHHH-HHHHHHHHHHH---TSCCEEEECSTTHHHHHHHSSE
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEECCHHHH-HHHHHHHHhhc---CCceEEEcCHHHHHHHHhcCCE
Confidence            368899999999999999999998 47898 799999986543 22222221100   0011111122478889999999


Q ss_pred             EEEccCC
Q 022672          148 ISLHPVL  154 (294)
Q Consensus       148 V~l~~Pl  154 (294)
                      |+.+.|.
T Consensus       198 VInaTp~  204 (283)
T 3jyo_A          198 VVNATPM  204 (283)
T ss_dssp             EEECSST
T ss_pred             EEECCCC
Confidence            9999995

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.75  E-value=6.3e-05  Score=66.94  Aligned_cols=76  Identities=17%  Similarity=0.173  Sum_probs=50.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADV  147 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDi  147 (294)
                      ..+.+++++|+|.|.+|++++..| ...|.+|++++|+..+. +.+.+.++.    .+  ...   ..+++++.+ ++|+
T Consensus       115 ~~~~~~~vlvlGaGg~g~a~a~~L-~~~G~~v~v~~R~~~~a-~~l~~~~~~----~~--~~~---~~~~~~~~~~~~Di  183 (272)
T 1p77_A          115 WLRPNQHVLILGAGGATKGVLLPL-LQAQQNIVLANRTFSKT-KELAERFQP----YG--NIQ---AVSMDSIPLQTYDL  183 (272)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHH-HHTTCEEEEEESSHHHH-HHHHHHHGG----GS--CEE---EEEGGGCCCSCCSE
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHHHccc----cC--CeE---EeeHHHhccCCCCE
Confidence            357899999999999999999998 46789999999986532 222222111    00  010   123344333 8999


Q ss_pred             EEEccCCC
Q 022672          148 ISLHPVLD  155 (294)
Q Consensus       148 V~l~~Plt  155 (294)
                      |+.++|..
T Consensus       184 vIn~t~~~  191 (272)
T 1p77_A          184 VINATSAG  191 (272)
T ss_dssp             EEECCCC-
T ss_pred             EEECCCCC
Confidence            99999954

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.74  E-value=9.4e-05  Score=67.09  Aligned_cols=104  Identities=17%  Similarity=0.210  Sum_probs=61.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhc-CCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~-~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.+|..+|..|+.. +|.+|+.||+..... +.............. .........++++ +++||+|++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~-~~~~~~l~~~~~~~~-~~~~i~~t~d~~~-l~~aDvViiav   77 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIP-QGKALDMYESGPVGL-FDTKVTGSNDYAD-TANSDIVIITA   77 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHH-HHHHHHHHTTHHHHT-CCCEEEEESCGGG-GTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHH-HHHHHhHHhhhhccc-CCcEEEECCCHHH-HCCCCEEEEeC
Confidence            4799999999999999988643 689999999976432 221110000000000 1112223356766 89999999999


Q ss_pred             CCCcccccc-------cc----HH---HHhcCCCCcEEEEcCC
Q 022672          153 VLDKTTYHL-------IN----KE---RLATMKKEAILVNCSR  181 (294)
Q Consensus       153 Plt~~t~~l-------i~----~~---~l~~mk~gailIN~aR  181 (294)
                      |. +...+.       .|    ++   .+....|++++|+++-
T Consensus        78 ~~-p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN  119 (310)
T 1guz_A           78 GL-PRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (310)
T ss_dssp             SC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            83 433222       11    11   1222357888888844

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.72  E-value=5.3e-05  Score=68.84  Aligned_cols=117  Identities=11%  Similarity=0.125  Sum_probs=67.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .++|+|||.|.||..+|..|+ ..|. +|+.||+..........+ ........ ..........++ +.+++||+|+++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la-~~g~~~V~l~D~~~~~~~~~~~~-l~~~~~~~-~~~~~i~~t~d~-~a~~~aDiVi~a   79 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVG-KDNLADVVLFDIAEGIPQGKALD-ITHSMVMF-GSTSKVIGTDDY-ADISGSDVVIIT   79 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHH-HHHHHHHH-TCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCceEEEEeCCchHHHHHHHH-HHhhhhhc-CCCcEEEECCCH-HHhCCCCEEEEe
Confidence            368999999999999999985 4566 899999876432211111 00000000 011122223566 678999999999


Q ss_pred             cCCCcccccc-----------ccHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022672          152 PVLDKTTYHL-----------INKE---RLATMKKEAILVNCSRGPVIDEVALVEHL  194 (294)
Q Consensus       152 ~Plt~~t~~l-----------i~~~---~l~~mk~gailIN~aRG~~vd~~aL~~aL  194 (294)
                      ++. +...++           +-++   .+....|++++|+++...-+....+.+..
T Consensus        80 vg~-p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           80 ASI-PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             CCC-SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCC-CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            942 221111           0011   12223569999999876545455555544

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.71  E-value=9.7e-05  Score=59.27  Aligned_cols=104  Identities=13%  Similarity=0.139  Sum_probs=70.3

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           72 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        72 ~gktvGIIGl----G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      +-++|+|||.    |.+|..+++.| +..|++|+..++.....  .               -.+...+.+++|+-...|+
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l-~~~G~~v~~vnp~~~~~--~---------------i~G~~~~~sl~el~~~vDl   73 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE--E---------------LFGEEAVASLLDLKEPVDI   73 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS--E---------------ETTEECBSSGGGCCSCCSE
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHH-HHCCCEEEEeCCCcccC--c---------------CCCEEecCCHHHCCCCCCE
Confidence            4568999999    89999999998 67888877776642110  0               0123345688888889999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +++++|. +....++. +..+. ..++++++.+-.    ++++.+..++..+.
T Consensus        74 avi~vp~-~~~~~v~~-~~~~~-gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           74 LDVFRPP-SALMDHLP-EVLAL-RPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             EEECSCH-HHHTTTHH-HHHHH-CCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             EEEEeCH-HHHHHHHH-HHHHc-CCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence            9999994 55666663 44432 334666654332    57778877776554

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.71  E-value=0.00019  Score=65.19  Aligned_cols=67  Identities=24%  Similarity=0.417  Sum_probs=49.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  150 (294)
                      .+|||||+|.||+..++.|.+.-+++++ ++|++.... +.+.+.+            +.. +.+++++++  +.|+|++
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~------------~~~-~~~~~~~l~~~~~D~V~i   69 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAA-EAIAGAY------------GCE-VRTIDAIEAAADIDAVVI   69 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHT------------TCE-ECCHHHHHHCTTCCEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHH-HHHHHHh------------CCC-cCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987433488877 588876542 2222211            122 578999998  8999999


Q ss_pred             ccCC
Q 022672          151 HPVL  154 (294)
Q Consensus       151 ~~Pl  154 (294)
                      |+|.
T Consensus        70 ~tp~   73 (331)
T 4hkt_A           70 CTPT   73 (331)
T ss_dssp             CSCG
T ss_pred             eCCc
Confidence            9994

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.70  E-value=0.00024  Score=64.94  Aligned_cols=68  Identities=24%  Similarity=0.328  Sum_probs=49.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  150 (294)
                      .+|||||+|.||+..++.|.+.-+++++ ++|++.... +.+.+.+            +...+.+++++++  +.|+|++
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~------------g~~~~~~~~~~l~~~~~D~V~i   71 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGA-QRLAEAN------------GAEAVASPDEVFARDDIDGIVI   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHTT------------TCEEESSHHHHTTCSCCCEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHH-HHHHHHc------------CCceeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987544478877 588876442 2222111            1234579999998  8999999


Q ss_pred             ccCC
Q 022672          151 HPVL  154 (294)
Q Consensus       151 ~~Pl  154 (294)
                      |+|.
T Consensus        72 ~tp~   75 (344)
T 3euw_A           72 GSPT   75 (344)
T ss_dssp             CSCG
T ss_pred             eCCc
Confidence            9994

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.69  E-value=0.00042  Score=63.10  Aligned_cols=80  Identities=13%  Similarity=0.113  Sum_probs=53.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCC---chhHHHHHHhhhhhhhhhcCCCCccccccC---CHHHH
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEV  141 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~el  141 (294)
                      .++.||++.|+|.|.+|++++..| ...|+ +|++++|+   ... .+.+.+.+..    ............   ++.+.
T Consensus       150 ~~l~gk~~lVlGaGG~g~aia~~L-~~~Ga~~V~i~nR~~~~~~~-a~~la~~~~~----~~~~~~~~~~~~~~~~l~~~  223 (315)
T 3tnl_A          150 HDIIGKKMTICGAGGAATAICIQA-ALDGVKEISIFNRKDDFYAN-AEKTVEKINS----KTDCKAQLFDIEDHEQLRKE  223 (315)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTTHHH-HHHHHHHHHH----HSSCEEEEEETTCHHHHHHH
T ss_pred             CCccCCEEEEECCChHHHHHHHHH-HHCCCCEEEEEECCCchHHH-HHHHHHHhhh----hcCCceEEeccchHHHHHhh
Confidence            468999999999999999999998 57898 89999998   332 2222222211    111111111222   35567


Q ss_pred             hhcCCEEEEccCC
Q 022672          142 LREADVISLHPVL  154 (294)
Q Consensus       142 l~~aDiV~l~~Pl  154 (294)
                      +.++|+|+.+.|.
T Consensus       224 l~~aDiIINaTp~  236 (315)
T 3tnl_A          224 IAESVIFTNATGV  236 (315)
T ss_dssp             HHTCSEEEECSST
T ss_pred             hcCCCEEEECccC
Confidence            8899999999995

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.69  E-value=0.00011  Score=57.60  Aligned_cols=99  Identities=11%  Similarity=0.182  Sum_probs=56.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhcCC
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREAD  146 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aD  146 (294)
                      +.+++|.|+|+|.+|+.+++.| ...|.+|+++|++.... +.        +...+. ..-.....+   ++++ +.++|
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l-~~~g~~v~~~d~~~~~~-~~--------~~~~~~-~~~~~d~~~~~~l~~~~~~~~d   72 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKV-NA--------YASYAT-HAVIANATEENELLSLGIRNFE   72 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHH-HT--------TTTTCS-EEEECCTTCHHHHHTTTGGGCS
T ss_pred             CcCCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH--------HHHhCC-EEEEeCCCCHHHHHhcCCCCCC
Confidence            5678899999999999999998 57899999999875432 11        111111 000001122   2233 57899


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      +|+.++|...++ .+.-....+.+.+. .+|-.+.+
T Consensus        73 ~vi~~~~~~~~~-~~~~~~~~~~~~~~-~ii~~~~~  106 (144)
T 2hmt_A           73 YVIVAIGANIQA-STLTTLLLKELDIP-NIWVKAQN  106 (144)
T ss_dssp             EEEECCCSCHHH-HHHHHHHHHHTTCS-EEEEECCS
T ss_pred             EEEECCCCchHH-HHHHHHHHHHcCCC-eEEEEeCC
Confidence            999999853222 22223344556666 44444443

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.67  E-value=0.00021  Score=65.42  Aligned_cols=79  Identities=18%  Similarity=0.283  Sum_probs=51.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.+|..+|..|+ ..|. +|..||+..........+ ....... ...........++++.+++||+|++++
T Consensus        10 ~kI~VIGaG~vG~~lA~~la-~~g~~~V~L~D~~~~~~~~~~~~-l~~~~~~-~~~~~~i~~t~d~~ea~~~aDiVi~a~   86 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCA-LRELADVVLYDVVKGMPEGKALD-LSHVTSV-VDTNVSVRAEYSYEAALTGADCVIVTA   86 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHH-HHHHHHH-TTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECChhHHHHHHHH-HHhhhhc-cCCCCEEEEeCCHHHHhCCCCEEEEcc
Confidence            58999999999999999985 4465 899999876432221111 1111111 111222333468888899999999998


Q ss_pred             --CCC
Q 022672          153 --VLD  155 (294)
Q Consensus       153 --Plt  155 (294)
                        |..
T Consensus        87 g~p~~   91 (331)
T 1pzg_A           87 GLTKV   91 (331)
T ss_dssp             SCSSC
T ss_pred             CCCCC
Confidence              643

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.67  E-value=0.00011  Score=59.28  Aligned_cols=101  Identities=9%  Similarity=0.101  Sum_probs=69.4

Q ss_pred             CCEEEEEcC----ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           73 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        73 gktvGIIGl----G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      -++|+|||.    |.+|..+++.| +..|++|+..++.....                   .+...+.+++|+....|++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l-~~~G~~v~~Vnp~~~~i-------------------~G~~~y~sl~~l~~~vDlv   81 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEEV-------------------LGRKCYPSVLDIPDKIEVV   81 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGCSSCCSEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHH-HHCCCEEEEECCCCCeE-------------------CCeeccCCHHHcCCCCCEE
Confidence            678999999    79999999997 57888887777653210                   1223456888888899999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ++++|. +....++ ++..+ ...+++++..+  .  .++++.+.+++..+.
T Consensus        82 vi~vp~-~~~~~vv-~~~~~-~gi~~i~~~~g--~--~~~~l~~~a~~~Gi~  126 (144)
T 2d59_A           82 DLFVKP-KLTMEYV-EQAIK-KGAKVVWFQYN--T--YNREASKKADEAGLI  126 (144)
T ss_dssp             EECSCH-HHHHHHH-HHHHH-HTCSEEEECTT--C--CCHHHHHHHHHTTCE
T ss_pred             EEEeCH-HHHHHHH-HHHHH-cCCCEEEECCC--c--hHHHHHHHHHHcCCE
Confidence            999994 4555555 33333 23345665533  2  367788888776654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.64  E-value=9.3e-05  Score=58.60  Aligned_cols=93  Identities=13%  Similarity=0.123  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhcCCE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADV  147 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDi  147 (294)
                      .++++.|+|+|.+|+.+|+.| ...|.+|+++|+++... +...        ..+.. .-.-...+   ++++ +.++|+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L-~~~g~~V~~id~~~~~~-~~~~--------~~~~~-~~~gd~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVREL-TAAGKKVLAVDKSKEKI-ELLE--------DEGFD-AVIADPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHHH-HHHH--------HTTCE-EEECCTTCHHHHHHSCCTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHH--------HCCCc-EEECCCCCHHHHHhCCcccCCE
Confidence            457899999999999999998 57899999999876542 2111        11110 00001122   2222 468999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEE
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILV  177 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailI  177 (294)
                      |++++|. + ...+.-....+.+....+++
T Consensus        74 vi~~~~~-~-~~n~~~~~~a~~~~~~~iia  101 (141)
T 3llv_A           74 VLITGSD-D-EFNLKILKALRSVSDVYAIV  101 (141)
T ss_dssp             EEECCSC-H-HHHHHHHHHHHHHCCCCEEE
T ss_pred             EEEecCC-H-HHHHHHHHHHHHhCCceEEE
Confidence            9999983 2 23333334444444333444

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.61  E-value=0.00032  Score=63.41  Aligned_cols=109  Identities=15%  Similarity=0.191  Sum_probs=66.7

Q ss_pred             CEEEEEcCChHHHH-HHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~-vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+|||||+|.||+. +++.|.+.-+++++ ++|++.... +.+.+.+       +     .....+++++..++|+|+++
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~-~~~~~~~-------g-----~~~~~~~~~l~~~~D~V~i~   72 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA-LPICESW-------R-----IPYADSLSSLAASCDAVFVH   72 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH-HHHHHHH-------T-----CCBCSSHHHHHTTCSEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHH-HHHHHHc-------C-----CCccCcHHHhhcCCCEEEEe
Confidence            47999999999996 88876433578876 788876542 2222211       1     11346777776789999999


Q ss_pred             cCCCccccccccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcc
Q 022672          152 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +|..  ...   +-....++.|. +++.- .-..+-+.+.|.++.++..+.
T Consensus        73 tp~~--~h~---~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           73 SSTA--SHF---DVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             SCTT--HHH---HHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCch--hHH---HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence            9932  221   22223345564 55542 222344556688877766554

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.61  E-value=9.5e-05  Score=59.57  Aligned_cols=99  Identities=8%  Similarity=0.015  Sum_probs=57.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-c-ccccCCHHHH-hhcCCEEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-T-WKRASSMDEV-LREADVIS  149 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~el-l~~aDiV~  149 (294)
                      .+++.|+|+|.+|+.+++.| ...|.+|++.|+......+......     ..+.... + ......+++. +.++|.|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L-~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCcEEEECCCHHHHHHHHHH-HHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            46799999999999999998 5789999999987432222111100     0000000 0 0011234554 78999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      ++++..  ...+.-....+.+.+...+|..
T Consensus        77 ~~~~~d--~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           77 ALSDND--ADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             ECSSCH--HHHHHHHHHHHHHTSSSCEEEE
T ss_pred             EecCCh--HHHHHHHHHHHHHCCCCEEEEE
Confidence            999843  2333334455556444444443

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.56  E-value=1.6e-05  Score=71.49  Aligned_cols=98  Identities=13%  Similarity=0.061  Sum_probs=61.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~~  152 (294)
                      ++|+|||.|.||..+|..|+ ..|.+|..|+++.... +.        ....+..+...  ..+..+.+ ..+|+|++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~-~~g~~V~~~~r~~~~~-~~--------~~~~g~~~~~~--~~~~~~~~~~~~D~vilav   70 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQ-QSLPHTTLIGRHAKTI-TY--------YTVPHAPAQDI--VVKGYEDVTNTFDVIIIAV   70 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HHCTTCEEEESSCEEE-EE--------ESSTTSCCEEE--EEEEGGGCCSCEEEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHH-HCCCeEEEEEeccCcE-EE--------EecCCeeccce--ecCchHhcCCCCCEEEEeC
Confidence            57999999999999999984 5578899999875321 10        00011111111  11233433 7899999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI  185 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v  185 (294)
                      |. .++...+ ++....+++++++|.+.-|=-.
T Consensus        71 k~-~~~~~~l-~~l~~~l~~~~~iv~~~nGi~~  101 (294)
T 3g17_A           71 KT-HQLDAVI-PHLTYLAHEDTLIILAQNGYGQ  101 (294)
T ss_dssp             CG-GGHHHHG-GGHHHHEEEEEEEEECCSSCCC
T ss_pred             Cc-cCHHHHH-HHHHHhhCCCCEEEEeccCccc
Confidence            94 3444443 3344456778899998877443

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.56  E-value=0.00036  Score=64.07  Aligned_cols=68  Identities=25%  Similarity=0.394  Sum_probs=49.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcC-CCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh--hcCCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--READVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--~~aDiV~  149 (294)
                      .+|||||+|.||+..++.+ +.. +++++ ++|++.... +.+.+.+       +     ...+.++++++  .+.|+|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l-~~~~~~~lvav~d~~~~~~-~~~~~~~-------g-----~~~~~~~~~~l~~~~~D~V~   71 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAY-TKSEKLKLVTCYSRTEDKR-EKFGKRY-------N-----CAGDATMEALLAREDVEMVI   71 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTCSSEEEEEEECSSHHHH-HHHHHHH-------T-----CCCCSSHHHHHHCSSCCEEE
T ss_pred             ceEEEEccCHHHHHHHHHH-HhCCCcEEEEEECCCHHHH-HHHHHHc-------C-----CCCcCCHHHHhcCCCCCEEE
Confidence            4799999999999999987 455 88866 678876542 2222211       1     12357899999  5699999


Q ss_pred             EccCCC
Q 022672          150 LHPVLD  155 (294)
Q Consensus       150 l~~Plt  155 (294)
                      +|+|..
T Consensus        72 i~tp~~   77 (354)
T 3db2_A           72 ITVPND   77 (354)
T ss_dssp             ECSCTT
T ss_pred             EeCChH
Confidence            999943

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.55  E-value=0.00037  Score=63.19  Aligned_cols=107  Identities=15%  Similarity=0.223  Sum_probs=62.9

Q ss_pred             EEEEEcCChHHHHH-HHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672           75 TVGVIGAGRIGSAY-ARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  150 (294)
Q Consensus        75 tvGIIGlG~IG~~v-A~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  150 (294)
                      +|||||+|.||+.+ ++.|.+ .+++++ ++|++.... +.+.+.+       +..    ..+.+++++++  ++|+|++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~-~~~~~~~-------g~~----~~~~~~~~~l~~~~~D~V~i   68 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERG-AAYATEN-------GIG----KSVTSVEELVGDPDVDAVYV   68 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHH-HHHHHHT-------TCS----CCBSCHHHHHTCTTCCEEEE
T ss_pred             eEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHH-HHHHHHc-------CCC----cccCCHHHHhcCCCCCEEEE
Confidence            79999999999998 777755 788876 678876542 2222211       110    13468999997  5999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vd~~aL~~aL~~g~i  199 (294)
                      ++|.  ..+.   .-..+.++.|. +++.- .-...-+.+.|.++.++..+
T Consensus        69 ~tp~--~~h~---~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~  114 (332)
T 2glx_A           69 STTN--ELHR---EQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGV  114 (332)
T ss_dssp             CSCG--GGHH---HHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred             eCCh--hHhH---HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCC
Confidence            9993  2221   22223345554 44432 11223333456665554443

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.55  E-value=0.00025  Score=63.56  Aligned_cols=95  Identities=14%  Similarity=0.079  Sum_probs=60.6

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .++.|+++.|+|.|.+|++++..| ...|+ +|++++|+.... +.+.+            ........++++ + ++|+
T Consensus       118 ~~~~~k~vlvlGaGGaaraia~~L-~~~G~~~v~v~nRt~~ka-~~La~------------~~~~~~~~~l~~-l-~~Di  181 (282)
T 3fbt_A          118 VEIKNNICVVLGSGGAARAVLQYL-KDNFAKDIYVVTRNPEKT-SEIYG------------EFKVISYDELSN-L-KGDV  181 (282)
T ss_dssp             CCCTTSEEEEECSSTTHHHHHHHH-HHTTCSEEEEEESCHHHH-HHHCT------------TSEEEEHHHHTT-C-CCSE
T ss_pred             CCccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHH------------hcCcccHHHHHh-c-cCCE
Confidence            357899999999999999999998 57898 899999886542 22111            011111223334 4 8999


Q ss_pred             EEEccCCC--cccc-ccccHHHHhcCCCCcEEEEcCCC
Q 022672          148 ISLHPVLD--KTTY-HLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       148 V~l~~Plt--~~t~-~li~~~~l~~mk~gailIN~aRG  182 (294)
                      |+.++|..  +... -.++.+.   ++++.+++++.-.
T Consensus       182 vInaTp~Gm~~~~~~~pi~~~~---l~~~~~v~DlvY~  216 (282)
T 3fbt_A          182 IINCTPKGMYPKEGESPVDKEV---VAKFSSAVDLIYN  216 (282)
T ss_dssp             EEECSSTTSTTSTTCCSSCHHH---HTTCSEEEESCCS
T ss_pred             EEECCccCccCCCccCCCCHHH---cCCCCEEEEEeeC
Confidence            99999853  1111 1234333   3566677776543

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.54  E-value=0.0002  Score=68.06  Aligned_cols=121  Identities=21%  Similarity=0.261  Sum_probs=78.7

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCC---EEEEEc----CC--chh--HHHHHHhhhhhhhhhcCCCCccccccC
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYD----LY--QAT--RLEKFVTAYGQFLKANGEQPVTWKRAS  136 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~---~V~~~d----~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (294)
                      |..+.++++.|+|.|..|+++++.| ...|+   +|+.+|    ++  ...  ..+... .+..........   .....
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L-~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~-~~~~~~a~~~~~---~~~~~  255 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRIL-TEAGVKPENVRVVELVNGKPRILTSDLDLEKLF-PYRGWLLKKTNG---ENIEG  255 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHH-HHTTCCGGGEEEEEEETTEEEECCTTSCHHHHS-TTCHHHHTTSCT---TCCCS
T ss_pred             CCCccCCEEEEECccHHHHHHHHHH-HHcCCCcCeEEEEEccCCCcCccccccchhHHH-HHHHHHhhcccc---ccccc
Confidence            3468899999999999999999998 57898   799999    76  111  100010 000000000000   00135


Q ss_pred             CHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672          137 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       137 ~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  198 (294)
                      ++.+.++++|+|+.+.|..   .+++.++.++.|+++.++++++...  .+.-+.+|.+.|.
T Consensus       256 ~L~e~l~~aDVlInaT~~~---~G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~  312 (439)
T 2dvm_A          256 GPQEALKDADVLISFTRPG---PGVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA  312 (439)
T ss_dssp             SHHHHHTTCSEEEECSCCC---SSSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC
T ss_pred             cHHHHhccCCEEEEcCCCc---cCCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC
Confidence            7899999999999998842   2566677888999999999995443  4444555555554

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.53  E-value=0.00035  Score=63.73  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=65.1

Q ss_pred             CEEEEEcCChHHHHHHHHHh-hcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~-~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  149 (294)
                      .+|||||+|.||+..++.+. +.-+++++ ++|++.... +.+.+.+       +. +   ..+.+++++++  ++|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~-~~~a~~~-------g~-~---~~~~~~~~~l~~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQL-EWAKNEL-------GV-E---TTYTNYKDMIDTENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHH-HHHHHTT-------CC-S---EEESCHHHHHTTSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHH-HHHHHHh-------CC-C---cccCCHHHHhcCCCCCEEE
Confidence            47999999999999999874 33578864 678876432 2221111       11 0   23468999996  699999


Q ss_pred             EccCCCccccccccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcC-Ccc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQN-PMF  200 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vd~~aL~~aL~~g-~i~  200 (294)
                      +|+|.  ..+.   +...+.++.|. +++.- .-..+-+.+.|.++.++. .+.
T Consensus        77 i~tp~--~~h~---~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           77 IVAPT--PFHP---EMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             ECSCG--GGHH---HHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             EeCCh--HhHH---HHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence            99993  2221   22233445565 44431 111222334577777665 543

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.53  E-value=0.00074  Score=61.37  Aligned_cols=81  Identities=17%  Similarity=0.200  Sum_probs=53.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCC---chhHHHHHHhhhhhhhhhcCCCCccccccCCH---HHH
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEV  141 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el  141 (294)
                      ..+.||++.|+|.|.+|++++..| ...|+ +|++++|+   ... .+.+.+.+..    ............++   .+.
T Consensus       144 ~~l~gk~~lVlGAGGaaraia~~L-~~~G~~~v~v~nRt~~~~~~-a~~la~~~~~----~~~~~v~~~~~~~l~~~~~~  217 (312)
T 3t4e_A          144 FDMRGKTMVLLGAGGAATAIGAQA-AIEGIKEIKLFNRKDDFFEK-AVAFAKRVNE----NTDCVVTVTDLADQHAFTEA  217 (312)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTHHHH-HHHHHHHHHH----HSSCEEEEEETTCHHHHHHH
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHH-HHcCCCEEEEEECCCchHHH-HHHHHHHhhh----ccCcceEEechHhhhhhHhh
Confidence            468899999999999999999998 57898 89999998   332 2222222111    01011111122344   567


Q ss_pred             hhcCCEEEEccCCC
Q 022672          142 LREADVISLHPVLD  155 (294)
Q Consensus       142 l~~aDiV~l~~Plt  155 (294)
                      +.++|+|+.+.|..
T Consensus       218 l~~~DiIINaTp~G  231 (312)
T 3t4e_A          218 LASADILTNGTKVG  231 (312)
T ss_dssp             HHHCSEEEECSSTT
T ss_pred             ccCceEEEECCcCC
Confidence            88999999999953

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.52  E-value=0.00031  Score=64.53  Aligned_cols=68  Identities=22%  Similarity=0.308  Sum_probs=49.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhc-CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  149 (294)
                      .+|||||+|.||+..++.+.+. -+++++ ++|++.... +.+.+.+       +     ...+.+++++++  +.|+|+
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~~~~~-------~-----~~~~~~~~~ll~~~~~D~V~   80 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAAL-KAAVERT-------G-----ARGHASLTDMLAQTDADIVI   80 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHH-------C-----CEEESCHHHHHHHCCCSEEE
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHH-HHHHHHc-------C-----CceeCCHHHHhcCCCCCEEE
Confidence            5799999999999999987433 388866 688876542 2222211       1     234579999997  799999


Q ss_pred             EccCC
Q 022672          150 LHPVL  154 (294)
Q Consensus       150 l~~Pl  154 (294)
                      +|+|.
T Consensus        81 i~tp~   85 (354)
T 3q2i_A           81 LTTPS   85 (354)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            99993

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.52  E-value=0.00042  Score=62.37  Aligned_cols=78  Identities=21%  Similarity=0.297  Sum_probs=63.7

Q ss_pred             CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+. +|+.+|.+| ..-++.|+.+..+                            ..+|.+..++||
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL-~~~~ATVTi~Hs~----------------------------T~dl~~~~~~AD  224 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMML-LQANATVTICHSR----------------------------TQNLPELVKQAD  224 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTT----------------------------CSSHHHHHHTCS
T ss_pred             CCCCCCCEEEEEeccccccchHHHHH-HhcCCEEEEecCC----------------------------CCCHHHHhhcCC
Confidence            4689999999999865 699999987 5789999887532                            247899999999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +|+.++.    ..+++..++   .|+|+++||++-
T Consensus       225 IvV~A~G----~p~~i~~d~---vk~GavVIDVGi  252 (303)
T 4b4u_A          225 IIVGAVG----KAELIQKDW---IKQGAVVVDAGF  252 (303)
T ss_dssp             EEEECSC----STTCBCGGG---SCTTCEEEECCC
T ss_pred             eEEeccC----CCCcccccc---ccCCCEEEEece
Confidence            9999986    245677664   689999999974

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.48  E-value=0.00029  Score=61.00  Aligned_cols=97  Identities=22%  Similarity=0.212  Sum_probs=62.4

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .-.+.|++|.|||.|.+|...++.| ...|++|+++++........+.+        .+.  +.+..-.--++.+.++|+
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l~~l~~--------~~~--i~~i~~~~~~~dL~~adL   94 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGF-LQEGAAITVVAPTVSAEINEWEA--------KGQ--LRVKRKKVGEEDLLNVFF   94 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHH-GGGCCCEEEECSSCCHHHHHHHH--------TTS--CEEECSCCCGGGSSSCSE
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHH--------cCC--cEEEECCCCHhHhCCCCE
Confidence            3479999999999999999999998 57899999999876554433221        111  111111111345678999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |+.+.. .++    +|.......+ -.++||++.
T Consensus        95 VIaAT~-d~~----~N~~I~~~ak-~gi~VNvvD  122 (223)
T 3dfz_A           95 IVVATN-DQA----VNKFVKQHIK-NDQLVNMAS  122 (223)
T ss_dssp             EEECCC-CTH----HHHHHHHHSC-TTCEEEC--
T ss_pred             EEECCC-CHH----HHHHHHHHHh-CCCEEEEeC
Confidence            987764 333    3445445556 567888743

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.48  E-value=0.00075  Score=61.65  Aligned_cols=69  Identities=22%  Similarity=0.232  Sum_probs=49.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  150 (294)
                      .+|||||+|.||+..++.|.+.-+++++ ++|++.... +.+.+.+       +.    ...+.+++++++  ++|+|++
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~-------~~----~~~~~~~~~ll~~~~~D~V~i   70 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRL-REMKEKL-------GV----EKAYKDPHELIEDPNVDAVLV   70 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHH-HHHHHHH-------TC----SEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHH-HHHHHHh-------CC----CceeCCHHHHhcCCCCCEEEE
Confidence            3799999999999999987443478877 578876532 2222221       10    123579999998  8999999


Q ss_pred             ccCC
Q 022672          151 HPVL  154 (294)
Q Consensus       151 ~~Pl  154 (294)
                      |+|.
T Consensus        71 ~tp~   74 (344)
T 3ezy_A           71 CSST   74 (344)
T ss_dssp             CSCG
T ss_pred             cCCC
Confidence            9994

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.47  E-value=0.0006  Score=62.03  Aligned_cols=69  Identities=12%  Similarity=0.134  Sum_probs=49.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  150 (294)
                      .+|||||+|.||+..++.|.+.-+++++ ++|++.... +.+.+.+       +..    ..+.++++++.  +.|+|++
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~-------~~~----~~~~~~~~ll~~~~~D~V~i   73 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENA-QKMAKEL-------AIP----VAYGSYEELCKDETIDIIYI   73 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHH-HHHHHHT-------TCC----CCBSSHHHHHHCTTCSEEEE
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HHHHHHc-------CCC----ceeCCHHHHhcCCCCCEEEE
Confidence            5799999999999999988543578877 578776432 2222221       110    23578999997  8999999


Q ss_pred             ccCC
Q 022672          151 HPVL  154 (294)
Q Consensus       151 ~~Pl  154 (294)
                      |+|.
T Consensus        74 ~tp~   77 (330)
T 3e9m_A           74 PTYN   77 (330)
T ss_dssp             CCCG
T ss_pred             cCCC
Confidence            9994

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.46  E-value=0.0003  Score=64.04  Aligned_cols=103  Identities=15%  Similarity=0.156  Sum_probs=59.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ++|+|||.|.||..+|..|+ ..|.  +|+.+|+..... +........... .. ....... .+. +.+++||+|+++
T Consensus         1 mkI~VIGaG~~G~~la~~l~-~~g~~~~V~l~D~~~~~~-~~~~~~l~~~~~-~~-~~~~i~~-~d~-~~~~~aDvViia   74 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALL-MKGFAREMVLIDVDKKRA-EGDALDLIHGTP-FT-RRANIYA-GDY-ADLKGSDVVIVA   74 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSSHHHH-HHHHHHHHHHGG-GS-CCCEEEE-CCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEeCChHHH-HHHHHHHHhhhh-hc-CCcEEEe-CCH-HHhCCCCEEEEc
Confidence            47999999999999999874 4566  999999976432 221111100010 00 1111112 343 567899999999


Q ss_pred             cCCCcccccc-----------ccHHHHhc---CCCCcEEEEcCCCc
Q 022672          152 PVLDKTTYHL-----------INKERLAT---MKKEAILVNCSRGP  183 (294)
Q Consensus       152 ~Plt~~t~~l-----------i~~~~l~~---mk~gailIN~aRG~  183 (294)
                      +|... ..++           +-++.+..   ..|++++|+++-+.
T Consensus        75 v~~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~  119 (319)
T 1a5z_A           75 AGVPQ-KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPV  119 (319)
T ss_dssp             CCCCC-CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred             cCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcH
Confidence            99533 2111           00222222   25788998886544

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.44  E-value=0.00063  Score=61.42  Aligned_cols=76  Identities=17%  Similarity=0.221  Sum_probs=47.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ++|+|||.|.||..+|..|+ ..|  .+|+.||+..... +.............. ...... ..++ +.+++||+|+++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~-~~g~~~~V~l~d~~~~~~-~~~~~~l~~~~~~~~-~~~~~~-~~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLI-AQGVADDYVFIDANEAKV-KADQIDFQDAMANLE-AHGNIV-INDW-AALADADVVIST   76 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSSHHHH-HHHHHHHHHHGGGSS-SCCEEE-ESCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEcCCHHHH-HHHHHHHHhhhhhcC-CCeEEE-eCCH-HHhCCCCEEEEe
Confidence            57999999999999999885 445  6999999976432 222111111000000 111111 2466 678999999999


Q ss_pred             cCC
Q 022672          152 PVL  154 (294)
Q Consensus       152 ~Pl  154 (294)
                      +|.
T Consensus        77 v~~   79 (309)
T 1hyh_A           77 LGN   79 (309)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            984

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.44  E-value=0.00032  Score=63.36  Aligned_cols=106  Identities=18%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  150 (294)
                      .+|||||+|.||+.+++.|.+.-+++++ ++|++.... +.        +..   .   .....+++++++  ++|+|++
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~-~~--------~~~---~---~~~~~~~~~~l~~~~~D~V~i   75 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNL-AL--------VPP---G---CVIESDWRSVVSAPEVEAVII   75 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHH-TT--------CCT---T---CEEESSTHHHHTCTTCCEEEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HH--------HHh---h---CcccCCHHHHhhCCCCCEEEE
Confidence            4799999999999999987433477755 788875432 11        000   1   223568999995  7999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vd~~aL~~aL~~g~i  199 (294)
                      ++|.  ..+.   +-..+.++.|. +++.- .--.+-+...|.++.++..+
T Consensus        76 ~tp~--~~h~---~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~  121 (315)
T 3c1a_A           76 ATPP--ATHA---EITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGV  121 (315)
T ss_dssp             ESCG--GGHH---HHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCC
T ss_pred             eCCh--HHHH---HHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCC
Confidence            9993  3222   22223345564 55552 12233344567777665443

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.44  E-value=0.00026  Score=63.32  Aligned_cols=105  Identities=15%  Similarity=0.151  Sum_probs=64.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ++.||++.|+|.|.||+++|+.| ...| +|++++++.... +.+.+.+.....  ....... ...++.+.+.++|+|+
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L-~~~G-~V~v~~r~~~~~-~~l~~~~~~~~~--~~~~~~~-d~~~~~~~~~~~DilV  198 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEKA-EALAKEIAEKLN--KKFGEEV-KFSGLDVDLDGVDIII  198 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHHH-HHHHHHHHHHHT--CCHHHHE-EEECTTCCCTTCCEEE
T ss_pred             CcCCCEEEEECchHHHHHHHHHH-HHCC-CEEEEECCHHHH-HHHHHHHhhhcc--cccceeE-EEeeHHHhhCCCCEEE
Confidence            57899999999999999999998 5788 999999876432 222221111000  0000000 1112345578899999


Q ss_pred             EccCCCcccc---ccccHHHHhcCCCCcEEEEcCCC
Q 022672          150 LHPVLDKTTY---HLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       150 l~~Plt~~t~---~li~~~~l~~mk~gailIN~aRG  182 (294)
                      .+.|......   ..+.  ..+.++++.+++|+...
T Consensus       199 n~ag~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~  232 (287)
T 1nvt_A          199 NATPIGMYPNIDVEPIV--KAEKLREDMVVMDLIYN  232 (287)
T ss_dssp             ECSCTTCTTCCSSCCSS--CSTTCCSSSEEEECCCS
T ss_pred             ECCCCCCCCCCCCCCCC--CHHHcCCCCEEEEeeeC
Confidence            9998543211   0120  13457888888888764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.43  E-value=0.00037  Score=63.01  Aligned_cols=122  Identities=16%  Similarity=0.121  Sum_probs=66.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ++|+|||.|.+|..+|..|+ ..|.  +|+.+|+..... +.......... . ......... .+. +.+++||+|+++
T Consensus         1 mkI~VIGaG~vG~~la~~la-~~g~~~eV~L~D~~~~~~-~~~~~~l~~~~-~-~~~~~~i~~-~~~-~a~~~aDvVIi~   74 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALV-LRGSCSELVLVDRDEDRA-QAEAEDIAHAA-P-VSHGTRVWH-GGH-SELADAQVVILT   74 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSSHHHH-HHHHHHHTTSC-C-TTSCCEEEE-ECG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCCHHHH-HHHHHhhhhhh-h-hcCCeEEEE-CCH-HHhCCCCEEEEc
Confidence            47999999999999999874 5677  999999876432 21111110000 0 001111111 343 568999999999


Q ss_pred             cCCCccccc------------ccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 022672          152 PVLDKTTYH------------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  202 (294)
Q Consensus       152 ~Plt~~t~~------------li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga  202 (294)
                      ++. +...+            ++.  .+.+....|++++|+++-+.-+....+.+.....++.|.
T Consensus        75 ~~~-~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           75 AGA-NQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             C-------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCC-CCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            953 22111            110  022233368999998766543434444444444455444

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.42  E-value=0.0013  Score=66.45  Aligned_cols=147  Identities=18%  Similarity=0.182  Sum_probs=90.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHH--Hh-hhhh---hhhhcCC--CCccccccCCHHHHhhcC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VT-AYGQ---FLKANGE--QPVTWKRASSMDEVLREA  145 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~--~~-~~~~---~~~~~~~--~~~~~~~~~~l~ell~~a  145 (294)
                      ++|||||.|.||..+|..++ ..|++|+.+|..........  .. .+..   .......  .........++++ +++|
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a-~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~a  394 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFA-RVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-LSTV  394 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-GGSC
T ss_pred             cEEEEEcccHHHHHHHHHHH-hCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-HhhC
Confidence            69999999999999999874 78999999999875422110  00 0000   0000011  1111223345544 7899


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEE
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIV  225 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvii  225 (294)
                      |+|+=++|.+-+.+.-+-++.-+.++++++|-.-..  -+.-..|.+.++ ..-+..++=-|.+  .+.-||.+   ||-
T Consensus       395 DlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTS--sl~i~~ia~~~~-~p~r~ig~HFfnP--~~~m~LVE---vi~  466 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS--ALNVDDIASSTD-RPQLVIGTHFFSP--AHVMRLLE---VIP  466 (742)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCS--SSCHHHHHTTSS-CGGGEEEEECCSS--TTTCCEEE---EEE
T ss_pred             CEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCC--cCChHHHHhhcC-CccccccccccCC--CCCCceEE---Eec
Confidence            999999998877776666777788999998865433  355566666653 3445566665543  22234444   565


Q ss_pred             ccCCC
Q 022672          226 VPHIA  230 (294)
Q Consensus       226 TPHia  230 (294)
                      +|+.+
T Consensus       467 g~~Ts  471 (742)
T 3zwc_A          467 SRYSS  471 (742)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            65544

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.42  E-value=0.00064  Score=62.64  Aligned_cols=67  Identities=18%  Similarity=0.260  Sum_probs=48.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  150 (294)
                      .+|||||+|.||+..++.|.+.-++++. ++|++.... +. ..       .     .+...+.+++++++  +.|+|++
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~-a~-------~-----~g~~~~~~~~~ll~~~~~D~V~i   71 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKR-EA-AA-------Q-----KGLKIYESYEAVLADEKVDAVLI   71 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHH-HH-HH-------T-----TTCCBCSCHHHHHHCTTCCEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHH-HH-HH-------h-----cCCceeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987433378876 568876542 11 11       1     11234579999997  7899999


Q ss_pred             ccCC
Q 022672          151 HPVL  154 (294)
Q Consensus       151 ~~Pl  154 (294)
                      |+|.
T Consensus        72 ~tp~   75 (359)
T 3e18_A           72 ATPN   75 (359)
T ss_dssp             CSCG
T ss_pred             cCCc
Confidence            9994

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.41  E-value=0.00075  Score=61.97  Aligned_cols=69  Identities=13%  Similarity=0.109  Sum_probs=48.3

Q ss_pred             CCEEEEEcCChHHH-HHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 022672           73 GQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  148 (294)
Q Consensus        73 gktvGIIGlG~IG~-~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  148 (294)
                      -.+|||||+|.||+ .+++.|.+.-+++++ ++|+.... .+.+.+.+            +.....+++++++  +.|+|
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~a~~~------------g~~~~~~~~~ll~~~~~D~V   93 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDR-AKRFTERF------------GGEPVEGYPALLERDDVDAV   93 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHH-HHHHHHHH------------CSEEEESHHHHHTCTTCSEE
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHH-HHHHHHHc------------CCCCcCCHHHHhcCCCCCEE
Confidence            45899999999998 788887433488876 67887543 22222222            1223478999996  58999


Q ss_pred             EEccCC
Q 022672          149 SLHPVL  154 (294)
Q Consensus       149 ~l~~Pl  154 (294)
                      ++|+|.
T Consensus        94 ~i~tp~   99 (350)
T 3rc1_A           94 YVPLPA   99 (350)
T ss_dssp             EECCCG
T ss_pred             EECCCc
Confidence            999994

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.41  E-value=0.00062  Score=61.84  Aligned_cols=68  Identities=12%  Similarity=0.189  Sum_probs=47.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccc-cccCCHHHHhh--cCCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLR--EADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~--~aDiV~  149 (294)
                      .+|||||+|.||+..++.|.+.-+++++ ++|++.... +.+.+            ..+. ..+.++++++.  +.|+|+
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~-~~~a~------------~~~~~~~~~~~~~ll~~~~~D~V~   72 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESA-QAFAN------------KYHLPKAYDKLEDMLADESIDVIY   72 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTT-CC---------------CCCCSCEESCHHHHHTCTTCCEEE
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHH-HHHHH------------HcCCCcccCCHHHHhcCCCCCEEE
Confidence            4799999999999999887544467766 568776432 11111            1112 24579999998  799999


Q ss_pred             EccCC
Q 022672          150 LHPVL  154 (294)
Q Consensus       150 l~~Pl  154 (294)
                      +++|.
T Consensus        73 i~tp~   77 (329)
T 3evn_A           73 VATIN   77 (329)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            99994

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.40  E-value=0.00053  Score=62.71  Aligned_cols=76  Identities=20%  Similarity=0.354  Sum_probs=48.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.+|..+|..|+ ..|. +|+.||....... .............. .........++ +.+++||+|++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la-~~g~~~V~L~Di~~~~l~-~~~~~l~~~~~~~~-~~~~i~~t~d~-~al~~aD~VI~av   90 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLG-QKDLGDVYMFDIIEGVPQ-GKALDLNHCMALIG-SPAKIFGENNY-EYLQNSDVVIITA   90 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSTTHHH-HHHHHHHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECCHHHHH-HHHHHHHhHhhccC-CCCEEEECCCH-HHHCCCCEEEEcC
Confidence            68999999999999999875 5566 8999999764322 11111111111101 11222333567 6789999999998


Q ss_pred             C
Q 022672          153 V  153 (294)
Q Consensus       153 P  153 (294)
                      +
T Consensus        91 g   91 (328)
T 2hjr_A           91 G   91 (328)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.40  E-value=0.00076  Score=61.02  Aligned_cols=110  Identities=15%  Similarity=0.179  Sum_probs=62.7

Q ss_pred             CEEEEEcCChHHH-HHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEEEc
Q 022672           74 QTVGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~-~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~  151 (294)
                      .+|||||+|.||+ .+++.|.+.-+++++++|++.... +.+.+.+       +..    ....+..+++ .++|+|+++
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~-~~~a~~~-------g~~----~~~~~~~~~l~~~~D~V~i~   70 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVL-GTLATRY-------RVS----ATCTDYRDVLQYGVDAVMIH   70 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHH-HHHHHHT-------TCC----CCCSSTTGGGGGCCSEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHHc-------CCC----ccccCHHHHhhcCCCEEEEE
Confidence            3799999999998 488887433478888899876542 2222221       111    0022333455 789999999


Q ss_pred             cCCCccccccccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcc
Q 022672          152 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +|.  ....-+   ..+.++.|. +++.- .--.+-+...|.++.++..+.
T Consensus        71 tp~--~~h~~~---~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           71 AAT--DVHSTL---AAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             SCG--GGHHHH---HHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCc--hhHHHH---HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence            993  322212   223344453 56552 112233445577777766554

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.34  E-value=0.00037  Score=62.96  Aligned_cols=104  Identities=13%  Similarity=0.121  Sum_probs=60.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .+|||||+|.||+.+++.+.+.-++++. ++|+++... +           ..+   ..+....++.+. .++|+|++|+
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~-~-----------~~g---~~~~~~~~l~~~-~~~DvViiat   73 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEV-P-----------FEL---QPFRVVSDIEQL-ESVDVALVCS   73 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------------------CC---TTSCEESSGGGS-SSCCEEEECS
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHH-H-----------HcC---CCcCCHHHHHhC-CCCCEEEECC
Confidence            4799999999999999987544578887 588765431 1           011   111223455555 7899999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCC--C-cccCHHHHHHHHHcCC
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSR--G-PVIDEVALVEHLKQNP  198 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aR--G-~~vd~~aL~~aL~~g~  198 (294)
                      |.  .++.   +...+.++.|.-++...-  + ...+...|.++.++..
T Consensus        74 p~--~~h~---~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g  117 (304)
T 3bio_A           74 PS--REVE---RTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG  117 (304)
T ss_dssp             CH--HHHH---HHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             Cc--hhhH---HHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence            83  2221   223344566766665432  2 2233355666665544

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.34  E-value=0.00074  Score=61.55  Aligned_cols=76  Identities=14%  Similarity=0.225  Sum_probs=47.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.+|..+|..|+ ..|. +|..+|...... +.............. .........++ +.+++||+|+++.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la-~~g~~~v~L~Di~~~~l-~~~~~~l~~~~~~~~-~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIV-QKNLGDVVLFDIVKNMP-HGKALDTSHTNVMAY-SNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHH-HHHHHHHHTHHHHHT-CCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCHHHH-HHHHHHHHhhhhhcC-CCcEEEECCCH-HHhCCCCEEEEeC
Confidence            58999999999999999875 4566 899999876432 211111111111111 11222233567 6789999999998


Q ss_pred             C
Q 022672          153 V  153 (294)
Q Consensus       153 P  153 (294)
                      +
T Consensus        81 g   81 (322)
T 1t2d_A           81 G   81 (322)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=97.33  E-value=0.00063  Score=65.35  Aligned_cols=128  Identities=10%  Similarity=0.175  Sum_probs=75.9

Q ss_pred             CCEEEEEcCChH--HHHHHHHHhh--cC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           73 GQTVGVIGAGRI--GSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        73 gktvGIIGlG~I--G~~vA~~L~~--~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .++|+|||.|.+  |.++|..|++  ++ +.+|..||+..... +...+.. .........+.......++++.+++||+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l-~~~~~~~-~~~l~~~~~~~~I~~ttD~~eal~dAD~   80 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERL-DAILTIA-KKYVEEVGADLKFEKTMNLDDVIIDADF   80 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHH-HHHHHHH-HHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHH-HHHHHHH-HHHhccCCCCcEEEEECCHHHHhCCCCE
Confidence            468999999997  5666766642  34 78999999986532 2211111 1111112223334445688888999999


Q ss_pred             EEEccCCC---------------------cccc-------ccc----c----H---HHHhcCCCCcEEEEcCCCcccCHH
Q 022672          148 ISLHPVLD---------------------KTTY-------HLI----N----K---ERLATMKKEAILVNCSRGPVIDEV  188 (294)
Q Consensus       148 V~l~~Plt---------------------~~t~-------~li----~----~---~~l~~mk~gailIN~aRG~~vd~~  188 (294)
                      |++++|..                     .+|.       |++    +    .   +.+....|++++||++-.--+-..
T Consensus        81 VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~  160 (480)
T 1obb_A           81 VINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTT  160 (480)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHH
T ss_pred             EEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Confidence            99999731                     1110       111    0    1   233445689999999876545455


Q ss_pred             HHHHHHHcCCcceEE
Q 022672          189 ALVEHLKQNPMFRVG  203 (294)
Q Consensus       189 aL~~aL~~g~i~ga~  203 (294)
                      ++.+ +...++.|.+
T Consensus       161 ~~~k-~p~~rviG~c  174 (480)
T 1obb_A          161 LVTR-TVPIKAVGFC  174 (480)
T ss_dssp             HHHH-HSCSEEEEEC
T ss_pred             HHHH-CCCCcEEecC
Confidence            5544 5555666653

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.32  E-value=0.00062  Score=62.19  Aligned_cols=70  Identities=21%  Similarity=0.299  Sum_probs=49.2

Q ss_pred             CEEEEEcCChHHHHHHHHHh-hcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~-~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  149 (294)
                      .+|||||+|.||+..++.+. +.-+++++ ++|++.... +.+.+.+       +   .....+.++++++++  .|+|+
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~-~~~~~~~-------g---~~~~~~~~~~~ll~~~~~D~V~   71 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAA-QKVVEQY-------Q---LNATVYPNDDSLLADENVDAVL   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHH-HHHHHHT-------T---CCCEEESSHHHHHHCTTCCEEE
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHH-HHHHHHh-------C---CCCeeeCCHHHHhcCCCCCEEE
Confidence            37999999999999999874 33578876 578876432 2222221       1   012345799999976  89999


Q ss_pred             EccCC
Q 022672          150 LHPVL  154 (294)
Q Consensus       150 l~~Pl  154 (294)
                      +|+|.
T Consensus        72 i~tp~   76 (344)
T 3mz0_A           72 VTSWG   76 (344)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            99993

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.31  E-value=0.00011  Score=64.49  Aligned_cols=100  Identities=19%  Similarity=0.252  Sum_probs=64.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCc-------------------hhHHHHHHhhhhhhhhhcCCC
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-------------------ATRLEKFVTAYGQFLKANGEQ  128 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~  128 (294)
                      ..|.+++|.|||+|.+|..+|+.|+ ..|+ ++..+|+..                   .+ .+...+.    +.... .
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La-~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~K-a~~~~~~----l~~~n-p   99 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLA-SAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPK-VESARDA----LTRIN-P   99 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBH-HHHHHHH----HHHHC-T
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHH-HcCCCeEEEEcCCCcccccCCcccccChhhcCcHH-HHHHHHH----HHHHC-C
Confidence            3589999999999999999999984 6787 888899775                   11 1111111    11100 0


Q ss_pred             Ccccc------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          129 PVTWK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       129 ~~~~~------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      ...+.      ...+++++++++|+|+.+.+ +.+++.++++...+.   +..+|+.
T Consensus       100 ~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~  152 (249)
T 1jw9_B          100 HIAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG  152 (249)
T ss_dssp             TSEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred             CcEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence            11111      01245678899999999997 577888887665553   3345554

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.29  E-value=0.00048  Score=63.68  Aligned_cols=95  Identities=20%  Similarity=0.138  Sum_probs=56.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      -+.++|+|+|.|.+|+.+|+.|++  ..+|.+.|+..... +...+.    ...   ..+......++.++++++|+|+.
T Consensus        14 g~~mkilvlGaG~vG~~~~~~L~~--~~~v~~~~~~~~~~-~~~~~~----~~~---~~~d~~d~~~l~~~~~~~DvVi~   83 (365)
T 3abi_A           14 GRHMKVLILGAGNIGRAIAWDLKD--EFDVYIGDVNNENL-EKVKEF----ATP---LKVDASNFDKLVEVMKEFELVIG   83 (365)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHTT--TSEEEEEESCHHHH-HHHTTT----SEE---EECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCccEEEEECCCHHHHHHHHHHhc--CCCeEEEEcCHHHH-HHHhcc----CCc---EEEecCCHHHHHHHHhCCCEEEE
Confidence            344579999999999999999843  46788888765432 221110    000   01111223467888999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ++|..  ...-+   .-+.++.|.-+|+++
T Consensus        84 ~~p~~--~~~~v---~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           84 ALPGF--LGFKS---IKAAIKSKVDMVDVS  108 (365)
T ss_dssp             CCCGG--GHHHH---HHHHHHHTCEEEECC
T ss_pred             ecCCc--ccchH---HHHHHhcCcceEeee
Confidence            99842  11111   112335566677765

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.23  E-value=0.00075  Score=59.43  Aligned_cols=99  Identities=19%  Similarity=0.221  Sum_probs=69.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEE-EEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      -..++|+++|+|.||+.+++.   . ++++ .+|+ .. .                +..  +.....++++++.++|+|+
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~---~-~leLv~v~~-~k-~----------------gel--gv~a~~d~d~lla~pD~VV   65 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL---G-NFEKIYAYD-RI-S----------------KDI--PGVVRLDEFQVPSDVSTVV   65 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH---S-CCSEEEEEC-SS-C----------------CCC--SSSEECSSCCCCTTCCEEE
T ss_pred             cccceEEEECcCHHHHHHHhc---C-CcEEEEEEe-cc-c----------------ccc--CceeeCCHHHHhhCCCEEE
Confidence            356789999999999999986   3 7765 4566 11 0                001  2233467889988999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  198 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~---~aL~~aL~~g~  198 (294)
                      -|.+-     .-+.+.....|+.|.-+|-+|-|.+.|.   +.|.++.++|.
T Consensus        66 e~A~~-----~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg  112 (253)
T 1j5p_A           66 ECASP-----EAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSP  112 (253)
T ss_dssp             ECSCH-----HHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCS
T ss_pred             ECCCH-----HHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCC
Confidence            98851     1333446677899999999999988887   45666666654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.22  E-value=0.00035  Score=63.14  Aligned_cols=100  Identities=16%  Similarity=0.221  Sum_probs=57.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|+|||.|.||..+|..| . .|.+|..|+++.... +.+.+ .+-.....+.. . ......-++....+|+|++++|
T Consensus         3 mkI~IiGaGa~G~~~a~~L-~-~g~~V~~~~r~~~~~-~~l~~-~G~~~~~~~~~-~-~~~~~~~~~~~~~~D~vilavK   76 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYL-S-LYHDVTVVTRRQEQA-AAIQS-EGIRLYKGGEE-F-RADCSADTSINSDFDLLVVTVK   76 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHHH-HHHHH-HCEEEEETTEE-E-EECCEEESSCCSCCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHH-h-cCCceEEEECCHHHH-HHHHh-CCceEecCCCe-e-cccccccccccCCCCEEEEEeC
Confidence            5899999999999999998 5 789999999876421 22111 11111100000 0 0000000234678999999998


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      . .++...+  +.++.+.+++ +|.+.-|=
T Consensus        77 ~-~~~~~~l--~~l~~~~~~~-ivs~~nGi  102 (307)
T 3ego_A           77 Q-HQLQSVF--SSLERIGKTN-ILFLQNGM  102 (307)
T ss_dssp             G-GGHHHHH--HHTTSSCCCE-EEECCSSS
T ss_pred             H-HHHHHHH--HHhhcCCCCe-EEEecCCc
Confidence            3 2333332  2233345666 88777663

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.22  E-value=0.013  Score=53.05  Aligned_cols=142  Identities=15%  Similarity=0.073  Sum_probs=88.6

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY   88 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~v   88 (294)
                      +.++-.+|+|-|.-+....++-  +++=++.+.++.                     | .+.|.+|++||=|  ++.+++
T Consensus       110 ~lA~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~---------------------g-~l~gl~va~vGD~~~rva~Sl  165 (307)
T 2i6u_A          110 AMASVATVPVINALSDEFHPCQ--VLADLQTIAERK---------------------G-ALRGLRLSYFGDGANNMAHSL  165 (307)
T ss_dssp             HHHHHCSSCEEESCCSSCCHHH--HHHHHHHHHHHH---------------------S-CCTTCEEEEESCTTSHHHHHH
T ss_pred             HHHhhCCCCEEcCCCCCcCccH--HHHHHHHHHHHh---------------------C-CcCCeEEEEECCCCcCcHHHH
Confidence            3455667999998765555532  233333333211                     1 4789999999996  999999


Q ss_pred             HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC-C------Ccc----
Q 022672           89 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV-L------DKT----  157 (294)
Q Consensus        89 A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P-l------t~~----  157 (294)
                      +..+ ..||++|....|..-...+.+.+...+.....|   ..+....+++|.++++|+|..-.= .      .++    
T Consensus       166 ~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~  241 (307)
T 2i6u_A          166 LLGG-VTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTG---ASVTVTADAHAAAAGADVLVTDTWTSMGQENDGLDRVKP  241 (307)
T ss_dssp             HHHH-HHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEEEECCSSCTTCTTSCCCSSGG
T ss_pred             HHHH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhcCCCEEEecceecCCcccchHHHHHH
Confidence            9986 579999999887542111111110000011112   113345789999999999987331 0      011    


Q ss_pred             -ccccccHHHHhcCCCCcEEEEcC
Q 022672          158 -TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       158 -t~~li~~~~l~~mk~gailIN~a  180 (294)
                       ...-++++.++.+||+++|..+.
T Consensus       242 ~~~y~v~~~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          242 FRPFQLNSRLLALADSDAIVLHCL  265 (307)
T ss_dssp             GGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             HhhcCCCHHHHhhcCCCcEEECCC
Confidence             12456889999999999999985

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.22  E-value=0.0017  Score=59.90  Aligned_cols=66  Identities=14%  Similarity=0.156  Sum_probs=46.2

Q ss_pred             CEEEEEcCChHHHH-HHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 022672           74 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~-vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  149 (294)
                      .+|||||+|.||+. .++.+.+.-++++. ++|++.....+.    +       .    +...+.++++++.  +.|+|+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~----~-------~----~~~~~~~~~~ll~~~~~D~V~   72 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRD----L-------P----DVTVIASPEAAVQHPDVDLVV   72 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHH----C-------T----TSEEESCHHHHHTCTTCSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhh----C-------C----CCcEECCHHHHhcCCCCCEEE
Confidence            47999999999997 67766333378876 578776432111    0       0    1234579999998  789999


Q ss_pred             EccCC
Q 022672          150 LHPVL  154 (294)
Q Consensus       150 l~~Pl  154 (294)
                      +|+|.
T Consensus        73 i~tp~   77 (364)
T 3e82_A           73 IASPN   77 (364)
T ss_dssp             ECSCG
T ss_pred             EeCCh
Confidence            99994

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.00069  Score=64.94  Aligned_cols=100  Identities=16%  Similarity=0.199  Sum_probs=58.9

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhcC
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREA  145 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~a  145 (294)
                      +..+.+++|+|+|.|.+|+.+++.|++..+.+|++++++.... +.+.+.       .+...  .......++.++++++
T Consensus        18 ~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka-~~la~~-------~~~~~~~~D~~d~~~l~~~l~~~   89 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANA-QALAKP-------SGSKAISLDVTDDSALDKVLADN   89 (467)
T ss_dssp             -----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHH-HHHHGG-------GTCEEEECCTTCHHHHHHHHHTS
T ss_pred             ccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHh-------cCCcEEEEecCCHHHHHHHHcCC
Confidence            4578899999999999999999998544478999999876432 221110       01000  0111112566788999


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      |+|+.++|..-.  .-+..   +.+++|..+++++
T Consensus        90 DvVIn~tp~~~~--~~v~~---a~l~~g~~vvd~~  119 (467)
T 2axq_A           90 DVVISLIPYTFH--PNVVK---SAIRTKTDVVTSS  119 (467)
T ss_dssp             SEEEECSCGGGH--HHHHH---HHHHHTCEEEECS
T ss_pred             CEEEECCchhhh--HHHHH---HHHhcCCEEEEee
Confidence            999999994321  11111   2234566677664

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.21  E-value=0.0021  Score=57.82  Aligned_cols=105  Identities=17%  Similarity=0.175  Sum_probs=59.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ..++|+|||.|.||..+|..|+ ..|.  +|+.+|+..........+ ......-..  ........+. +.+++||+|+
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~-~~g~~~~V~l~d~~~~~~~~~~~~-~~~~~~~~~--~~~v~~~~~~-~~~~~aD~Vi   80 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAA-QRGIAREIVLEDIAKERVEAEVLD-MQHGSSFYP--TVSIDGSDDP-EICRDADMVV   80 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSSHHHHHHHHHH-HHHTGGGST--TCEEEEESCG-GGGTTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCChhHHHHHHHH-HHhhhhhcC--CeEEEeCCCH-HHhCCCCEEE
Confidence            3468999999999999999874 5677  999999875332111111 000000000  1111111243 4578999999


Q ss_pred             EccCCCccccc---------------cccHHHHhcCCCCcEEEEcCCCc
Q 022672          150 LHPVLDKTTYH---------------LINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       150 l~~Plt~~t~~---------------li~~~~l~~mk~gailIN~aRG~  183 (294)
                      ++++. +...+               -+-++. ....+++++|+++-|-
T Consensus        81 i~v~~-~~~~g~~r~~~~~~n~~~~~~~~~~i-~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           81 ITAGP-RQKPGQSRLELVGATVNILKAIMPNL-VKVAPNAIYMLITNPV  127 (319)
T ss_dssp             ECCCC-CCCTTCCHHHHHHHHHHHHHHHHHHH-HHHCTTSEEEECCSSH
T ss_pred             ECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCceEEEecCch
Confidence            99963 22221               011222 2236888999887654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.21  E-value=0.00072  Score=57.61  Aligned_cols=97  Identities=15%  Similarity=0.147  Sum_probs=55.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~l~~  152 (294)
                      ++|.|+|+|.+|+.+|+.| ...|.+|+++|+++... +.+.+..+... -.+    .......+++. +.++|+|++++
T Consensus         1 M~iiIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~~-~~l~~~~~~~~-i~g----d~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSM-LSRKYGVVIINKDRELC-EEFAKKLKATI-IHG----DGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHH-HHTTCCEEEEESCHHHH-HHHHHHSSSEE-EES----CTTSHHHHHHHTCCTTCEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHcCCeE-EEc----CCCCHHHHHhcCcccCCEEEEec
Confidence            3699999999999999998 57899999999876542 22111100000 000    00011224443 67899999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEc
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      |...  ..++-....+.+.+...+|-.
T Consensus        74 ~~d~--~n~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           74 PRDE--VNLFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             SCHH--HHHHHHHHHHHTSCCCEEEEC
T ss_pred             CCcH--HHHHHHHHHHHHcCCCeEEEE
Confidence            8432  233333444444444445433

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.20  E-value=0.0025  Score=58.47  Aligned_cols=113  Identities=17%  Similarity=0.128  Sum_probs=67.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  150 (294)
                      .+|||||+|.||+.+++.|.+.-+++++ ++|++.... +.+.+.+       +.. .....+.+++++++  +.|+|++
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~-~~~a~~~-------~~~-~~~~~~~~~~~ll~~~~~D~V~i   77 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKA-KAFATAN-------NYP-ESTKIHGSYESLLEDPEIDALYV   77 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHT-------TCC-TTCEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHH-HHHHHHh-------CCC-CCCeeeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999887433477765 678776432 2222221       110 01223578999996  5999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ++|.  ..+.   .-..+.++.|. +++.- ---.+-+.++|.++.++..+.
T Consensus        78 ~tp~--~~h~---~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           78 PLPT--SLHV---EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             CCCG--GGHH---HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             cCCh--HHHH---HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence            9993  3222   22234456665 44432 112233446677777766554

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.16  E-value=0.0011  Score=60.25  Aligned_cols=103  Identities=17%  Similarity=0.183  Sum_probs=64.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .+|||||+|+||+.+++.+.+.-+++++ ++|++....           +.      .+.....++++++.++|+|++|+
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~-----------~~------~gv~~~~d~~~ll~~~DvViiat   66 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-----------TK------TPVFDVADVDKHADDVDVLFLCM   66 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-----------SS------SCEEEGGGGGGTTTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHh-----------hc------CCCceeCCHHHHhcCCCEEEEcC
Confidence            3799999999999999987433378764 678764321           00      12223457788888899999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCcc-cC-H-HHHHHHHHcCC
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGPV-ID-E-VALVEHLKQNP  198 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd-~-~aL~~aL~~g~  198 (294)
                      |..  +.   -+.....++.|.-+|...-..+ +. . +.|.++.+++.
T Consensus        67 p~~--~h---~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           67 GSA--TD---IPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             CTT--TH---HHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             CcH--HH---HHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            832  21   1334455667776665544332 22 2 45666666544

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.16  E-value=0.0011  Score=60.22  Aligned_cols=109  Identities=17%  Similarity=0.251  Sum_probs=60.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      -++|+|||.|.||.++|..|+. ++.-+|+.+|.... ..+.......... ..........  .+..+.+++||+|+++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~-~~~~~~~dl~~~~-~~~~~~~~i~--~~~~~al~~aDvViia   81 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES-KAIGDAMDFNHGK-VFAPKPVDIW--HGDYDDCRDADLVVIC   81 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH-HHHHHHHHHHHHT-TSSSSCCEEE--ECCGGGTTTCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcc-hHHHHHhhHHHHh-hhcCCCeEEE--cCcHHHhCCCCEEEEc
Confidence            3689999999999999988743 23348999999764 2222111111100 0000011111  2334668999999999


Q ss_pred             cCCCcccccc-----c--c----HH---HHhcCCCCcEEEEcCCCcccCHH
Q 022672          152 PVLDKTTYHL-----I--N----KE---RLATMKKEAILVNCSRGPVIDEV  188 (294)
Q Consensus       152 ~Plt~~t~~l-----i--~----~~---~l~~mk~gailIN~aRG~~vd~~  188 (294)
                      .|.. ...++     +  +    .+   .+....|++++++++.  .+|.-
T Consensus        82 ~~~~-~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN--Pv~~~  129 (316)
T 1ldn_A           82 AGAN-QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN--PVDIL  129 (316)
T ss_dssp             CSCC-CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS--SHHHH
T ss_pred             CCCC-CCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC--chHHH
Confidence            8743 22221     1  0    11   2222357888998754  44443

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.15  E-value=0.0011  Score=60.92  Aligned_cols=71  Identities=15%  Similarity=0.291  Sum_probs=50.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHh-hcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  148 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~-~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  148 (294)
                      -.+|||||+|.||+..++.|. +.-+++++ ++|++.... +.+.+.+       +.   ....+.++++++.  +.|+|
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~a~~~-------g~---~~~~~~~~~~ll~~~~~D~V   91 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRA-QAALDKY-------AI---EAKDYNDYHDLINDKDVEVV   91 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHH-HHHHHHH-------TC---CCEEESSHHHHHHCTTCCEE
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHH-HHHHHHh-------CC---CCeeeCCHHHHhcCCCCCEE
Confidence            358999999999999999874 33578876 588876542 2222222       10   1234579999997  48999


Q ss_pred             EEccCC
Q 022672          149 SLHPVL  154 (294)
Q Consensus       149 ~l~~Pl  154 (294)
                      ++|+|.
T Consensus        92 ~i~tp~   97 (357)
T 3ec7_A           92 IITASN   97 (357)
T ss_dssp             EECSCG
T ss_pred             EEcCCc
Confidence            999994

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=97.14  E-value=0.0013  Score=62.70  Aligned_cols=76  Identities=16%  Similarity=0.223  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCChH--HHHHHHHHhh--c-CCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           72 KGQTVGVIGAGRI--GSAYARMMVE--G-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        72 ~gktvGIIGlG~I--G~~vA~~L~~--~-~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      ..++|+|||.|.+  |..+++.|++  . .| +|+.||...... +.. ......+..   .+..+....++++.+++||
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~l-e~~-~~~~~~l~~---~~~~I~~TtD~~eAl~dAD   77 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAA-QKN-EVIGNHSGN---GRWRYEAVSTLKKALSAAD   77 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHH-HHH-HHHHTTSTT---SCEEEEEESSHHHHHTTCS
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHH-HHH-HHHHHHHhc---cCCeEEEECCHHHHhcCCC
Confidence            3568999999997  6788887653  2 36 999999976432 111 111111111   2334455679999999999


Q ss_pred             EEEEccC
Q 022672          147 VISLHPV  153 (294)
Q Consensus       147 iV~l~~P  153 (294)
                      +|+.+++
T Consensus        78 fVI~air   84 (450)
T 3fef_A           78 IVIISIL   84 (450)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            9999996

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.13  E-value=0.0025  Score=57.83  Aligned_cols=68  Identities=13%  Similarity=0.221  Sum_probs=46.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcC---CCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGF---KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  147 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~---g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  147 (294)
                      .++||||+|.||+..++.| +..   +++++ ++|++... .+.+.+.+       +..    ..+.++++++.  +.|+
T Consensus         3 ~rigiiG~G~ig~~~~~~l-~~~~~~~~~l~av~d~~~~~-a~~~a~~~-------~~~----~~~~~~~~ll~~~~vD~   69 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVL-QTLPRSEHQVVAVAARDLSR-AKEFAQKH-------DIP----KAYGSYEELAKDPNVEV   69 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTSCTTTEEEEEEECSSHHH-HHHHHHHH-------TCS----CEESSHHHHHHCTTCCE
T ss_pred             cEEEEECchHHHHHHHHHH-HhCCCCCeEEEEEEcCCHHH-HHHHHHHc-------CCC----cccCCHHHHhcCCCCCE
Confidence            3799999999999999987 443   35655 57877543 22322222       110    23578999997  6999


Q ss_pred             EEEccCC
Q 022672          148 ISLHPVL  154 (294)
Q Consensus       148 V~l~~Pl  154 (294)
                      |++++|.
T Consensus        70 V~i~tp~   76 (334)
T 3ohs_X           70 AYVGTQH   76 (334)
T ss_dssp             EEECCCG
T ss_pred             EEECCCc
Confidence            9999993

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.13  E-value=0.0029  Score=56.89  Aligned_cols=125  Identities=17%  Similarity=0.246  Sum_probs=72.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ++|+|||.|.+|.++|..|+ ..|.  +|..||+..........+ ..... .....+.......+ .+.+++||+|+++
T Consensus         1 MkI~ViGaG~vG~~la~~l~-~~~~~~~v~L~D~~~~~~~g~~~d-l~~~~-~~~~~~~~i~~t~d-~~a~~~aDiVVia   76 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCL-LNLDVDEIALVDIAEDLAVGEAMD-LAHAA-AGIDKYPKIVGGAD-YSLLKGSEIIVVT   76 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHSCCSEEEEECSSHHHHHHHHHH-HHHHH-HTTTCCCEEEEESC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEECChHHHHHHHHH-HHhhh-hhcCCCCEEEEeCC-HHHhCCCCEEEEC
Confidence            47999999999999999874 4455  999999976542211111 00000 00111222222345 7889999999999


Q ss_pred             cCCCcccccc-----c--cH-------HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH----cCCcceEE--ee
Q 022672          152 PVLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSRGPVIDEVALVEHLK----QNPMFRVG--LD  205 (294)
Q Consensus       152 ~Plt~~t~~l-----i--~~-------~~l~~mk~gailIN~aRG~~vd~~aL~~aL~----~g~i~ga~--lD  205 (294)
                      .+. +...++     +  |.       +.+....|++++++++  ..+|.-..+-.-.    ..++.|.+  ||
T Consensus        77 ag~-~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD  147 (294)
T 1oju_A           77 AGL-ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLD  147 (294)
T ss_dssp             CCC-CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHH
T ss_pred             CCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccH
Confidence            863 322222     1  11       2344557899999997  5565444322111    34566663  55

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.12  E-value=0.00031  Score=65.29  Aligned_cols=39  Identities=26%  Similarity=0.490  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      ..+.||||+|||.|.+|+.+++.+ +.+|++|+++|+.+.
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa-~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAA-KEMGYKIAVLDPTKN   48 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCC
Confidence            457999999999999999999996 799999999998654

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.06  E-value=0.0019  Score=56.56  Aligned_cols=80  Identities=18%  Similarity=0.176  Sum_probs=52.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE-c
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL-H  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l-~  151 (294)
                      .+|+|+|+|+||+.+++.+...-+ ++.+ +|+....                   ..++....++++++ ++|+|+- +
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~~~~~-------------------~~gv~v~~dl~~l~-~~DVvIDft   62 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGH-EIVGVIENTPKA-------------------TTPYQQYQHIADVK-GADVAIDFS   62 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEECSSCC---------------------CCSCBCSCTTTCT-TCSEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCC-EEEEEEecCccc-------------------cCCCceeCCHHHHh-CCCEEEEeC
Confidence            579999999999999998743335 7665 7876432                   11223446788888 9999884 4


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      .|  +.+.     +.+. ++.|.-+|....|
T Consensus        63 ~p--~a~~-----~~~~-l~~g~~vVigTTG   85 (243)
T 3qy9_A           63 NP--NLLF-----PLLD-EDFHLPLVVATTG   85 (243)
T ss_dssp             CH--HHHH-----HHHT-SCCCCCEEECCCS
T ss_pred             Ch--HHHH-----HHHH-HhcCCceEeCCCC
Confidence            44  2222     2334 7777777766666

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.05  E-value=0.0018  Score=61.21  Aligned_cols=73  Identities=11%  Similarity=0.113  Sum_probs=47.7

Q ss_pred             CEEEEEcCChHHH-HHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 022672           74 QTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~-~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  149 (294)
                      .+|||||+|.||+ .+++.|.+.-+++++ ++|++.... +.+.+.+       +........+.++++++.  +.|+|+
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~-~~~a~~~-------g~~~~~~~~~~~~~~ll~~~~vD~V~  155 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKA-KIVAAEY-------GVDPRKIYDYSNFDKIAKDPKIDAVY  155 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHH-HHHHHHT-------TCCGGGEECSSSGGGGGGCTTCCEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHH-HHHHHHh-------CCCcccccccCCHHHHhcCCCCCEEE
Confidence            4899999999997 888887433367764 678876432 2222211       111101123568999997  799999


Q ss_pred             EccCC
Q 022672          150 LHPVL  154 (294)
Q Consensus       150 l~~Pl  154 (294)
                      +|+|.
T Consensus       156 iatp~  160 (433)
T 1h6d_A          156 IILPN  160 (433)
T ss_dssp             ECSCG
T ss_pred             EcCCc
Confidence            99993

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.05  E-value=0.0013  Score=60.62  Aligned_cols=68  Identities=10%  Similarity=0.142  Sum_probs=46.9

Q ss_pred             CEEEEEcCChHHHH-HHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC--CEEE
Q 022672           74 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~-vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~  149 (294)
                      .+|||||+|.||+. .++.|.+.-+++++ ++|++.... +.+.+.+       +    ....+.++++++++.  |+|+
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------~----~~~~~~~~~~ll~~~~vD~V~   73 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERA-RRVHRFI-------S----DIPVLDNVPAMLNQVPLDAVV   73 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHH-GGGGGTS-------C----SCCEESSHHHHHHHSCCSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHH-HHHHHhc-------C----CCcccCCHHHHhcCCCCCEEE
Confidence            47999999999995 78887433478876 678876542 2111110       1    123457999999865  9999


Q ss_pred             EccC
Q 022672          150 LHPV  153 (294)
Q Consensus       150 l~~P  153 (294)
                      +|+|
T Consensus        74 i~tp   77 (359)
T 3m2t_A           74 MAGP   77 (359)
T ss_dssp             ECSC
T ss_pred             EcCC
Confidence            9999

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.04  E-value=0.0034  Score=57.45  Aligned_cols=67  Identities=15%  Similarity=0.123  Sum_probs=46.7

Q ss_pred             CEEEEEcCChHHHH-HHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEE
Q 022672           74 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~-vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  149 (294)
                      .+|||||+|.||+. .++.+.+.-++++. ++|+.......             .  ..+...+.++++++.+  .|+|+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~--~~~~~~~~~~~~ll~~~~vD~V~   72 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------D--WPAIPVVSDPQMLFNDPSIDLIV   72 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------T--CSSCCEESCHHHHHHCSSCCEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------h--CCCCceECCHHHHhcCCCCCEEE
Confidence            47999999999997 67776333378876 57876543210             0  0122345799999976  89999


Q ss_pred             EccCCC
Q 022672          150 LHPVLD  155 (294)
Q Consensus       150 l~~Plt  155 (294)
                      +|+|..
T Consensus        73 i~tp~~   78 (352)
T 3kux_A           73 IPTPND   78 (352)
T ss_dssp             ECSCTT
T ss_pred             EeCChH
Confidence            999943

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.03  E-value=0.0012  Score=60.30  Aligned_cols=68  Identities=13%  Similarity=0.161  Sum_probs=45.6

Q ss_pred             CEEEEEcCChHHHH-HHH-HHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEE
Q 022672           74 QTVGVIGAGRIGSA-YAR-MMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  148 (294)
Q Consensus        74 ktvGIIGlG~IG~~-vA~-~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV  148 (294)
                      .+|||||+|.||+. .++ .+...-++++. ++|++.... +. ..       ..    .+...+.++++++.+  .|+|
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~-~~-~~-------~~----~~~~~~~~~~~ll~~~~~D~V   69 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQ-AP-------IY----SHIHFTSDLDEVLNDPDVKLV   69 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGG-GG-SG-------GG----TTCEEESCTHHHHTCTTEEEE
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHH-HH-HH-------hc----CCCceECCHHHHhcCCCCCEE
Confidence            37999999999996 455 43334578877 688876432 11 00       00    112345799999976  8999


Q ss_pred             EEccCC
Q 022672          149 SLHPVL  154 (294)
Q Consensus       149 ~l~~Pl  154 (294)
                      ++|+|.
T Consensus        70 ~i~tp~   75 (345)
T 3f4l_A           70 VVCTHA   75 (345)
T ss_dssp             EECSCG
T ss_pred             EEcCCh
Confidence            999994

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=97.00  E-value=0.0013  Score=60.30  Aligned_cols=102  Identities=17%  Similarity=0.240  Sum_probs=64.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCch------------------hHHHHHHhhhhhhhhhcCCCC
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  129 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  129 (294)
                      ..|++++|.|||+|.+|..+|+.|+ ..|+ ++..+|...-                  ...+...+    .+.... ..
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La-~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~----~L~~in-P~  103 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA----SLKRIF-PL  103 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHH----HHHHHC-TT
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHH----HHHHhC-CC
Confidence            4689999999999999999999985 6676 6778876430                  01111111    111111 11


Q ss_pred             ccccc---------------------cCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          130 VTWKR---------------------ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       130 ~~~~~---------------------~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +.+..                     ...++++++++|+|+.|+- +.+++.++++...+   .+..+|+.+
T Consensus       104 v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD-n~~tR~lin~~c~~---~~~plI~aa  171 (340)
T 3rui_A          104 MDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNI---ENKTVINAA  171 (340)
T ss_dssp             CEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS-STGGGHHHHHHHHH---TTCEEEEEE
T ss_pred             CEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC-CHHHHHHHHHHHHH---cCCcEEEee
Confidence            11111                     1235688999999999986 67789888776654   344577764

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=96.96  E-value=0.0017  Score=58.24  Aligned_cols=105  Identities=10%  Similarity=0.096  Sum_probs=64.9

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  148 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  148 (294)
                      ..+|+|+|+ |.+|+.+++.+ +..|++++ .+||.....                 ...+...+.+++|+..  ..|++
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l-~~~g~~~V~~V~p~~~g~-----------------~~~G~~vy~sl~el~~~~~~D~v   68 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQA-IAYGTKMVGGVTPGKGGT-----------------THLGLPVFNTVREAVAATGATAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHHCCCEE
T ss_pred             CCEEEEECCCChHHHHHHHHH-HHCCCeEEEEeCCCcccc-----------------eeCCeeccCCHHHHhhcCCCCEE
Confidence            357999999 99999999987 45688854 566642100                 0122334578999998  89999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDEVALVEHLKQNPM  199 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~-~vd~~aL~~aL~~g~i  199 (294)
                      ++++|. +.....+ .+.++. ... .+|..+-|- .-+.+.|.++.++..+
T Consensus        69 iI~tP~-~~~~~~~-~ea~~~-Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv  116 (288)
T 2nu8_A           69 VIYVPA-PFCKDSI-LEAIDA-GIK-LIITITEGIPTLDMLTVKVKLDEAGV  116 (288)
T ss_dssp             EECCCG-GGHHHHH-HHHHHT-TCS-EEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred             EEecCH-HHHHHHH-HHHHHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            999993 3333332 333331 222 334455443 2334578888876554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.95  E-value=0.00094  Score=62.99  Aligned_cols=96  Identities=17%  Similarity=0.199  Sum_probs=60.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhcCCEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  148 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV  148 (294)
                      +.+|.|+|+|.+|+.+|+.| ...|.+|++.|..+... +..        ...+...+ .-...+   |+++ +.++|+|
T Consensus         4 ~~~viIiG~Gr~G~~va~~L-~~~g~~vvvId~d~~~v-~~~--------~~~g~~vi-~GDat~~~~L~~agi~~A~~v   72 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLL-LSSGVKMVVLDHDPDHI-ETL--------RKFGMKVF-YGDATRMDLLESAGAAKAEVL   72 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEECCHHHH-HHH--------HHTTCCCE-ESCTTCHHHHHHTTTTTCSEE
T ss_pred             CCeEEEECCCHHHHHHHHHH-HHCCCCEEEEECCHHHH-HHH--------HhCCCeEE-EcCCCCHHHHHhcCCCccCEE
Confidence            34699999999999999998 68899999999887542 211        11111111 001122   3333 6789999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +++++...  ..+.-....+.+.|...+|--++
T Consensus        73 iv~~~~~~--~n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           73 INAIDDPQ--TNLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             EECCSSHH--HHHHHHHHHHHHCTTCEEEEEES
T ss_pred             EECCCChH--HHHHHHHHHHHhCCCCeEEEEEC
Confidence            99998433  33333455566777755554433

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.95  E-value=0.0024  Score=58.28  Aligned_cols=109  Identities=20%  Similarity=0.246  Sum_probs=61.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      -.+++|+|||.|.||.++|..|+ ..|.  ++..+|...........+ .... .... ...  ....+..+.+++||+|
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~-~~~~~~el~l~D~~~~k~~g~a~D-L~~~-~~~~-~~~--~i~~~~~~a~~~aDiV   80 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMV-LQGIAQEIGIVDIFKDKTKGDAID-LEDA-LPFT-SPK--KIYSAEYSDAKDADLV   80 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSCHHHHHHHHHH-HHTT-GGGS-CCC--EEEECCGGGGTTCSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEeCChHHHHHHHhh-Hhhh-hhhc-CCc--EEEECcHHHhcCCCEE
Confidence            35678999999999999999874 3444  899999865432211111 1000 0000 111  1122335678999999


Q ss_pred             EEccCCCc---ccc-ccc--c----H---HHHhcCCCCcEEEEcCCCcccCH
Q 022672          149 SLHPVLDK---TTY-HLI--N----K---ERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       149 ~l~~Plt~---~t~-~li--~----~---~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      +++.....   .++ .++  |    +   +.+....|++++++++  ..+|.
T Consensus        81 vi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt--NPvdi  130 (326)
T 3vku_A           81 VITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDI  130 (326)
T ss_dssp             EECCCCC----------------CHHHHHHHHHTTTCCSEEEECS--SSHHH
T ss_pred             EECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc--CchHH
Confidence            99875321   112 112  1    1   2334456899999996  44553

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.94  E-value=0.0036  Score=56.80  Aligned_cols=108  Identities=19%  Similarity=0.201  Sum_probs=61.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ..+|+|||.|.+|.+++..|+. ++.-++..+|...........+ ..... .....+.....  +..+.+++||+|+++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~d-l~~~~-~~~~~~~~v~~--~~~~a~~~aDvVvi~   81 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMD-LKHAT-PYSPTTVRVKA--GEYSDCHDADLVVIC   81 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHH-HHHHG-GGSSSCCEEEE--CCGGGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhh-HHhhh-hhcCCCeEEEe--CCHHHhCCCCEEEEC
Confidence            4689999999999999988753 2335899999875322111111 11101 11101122221  345678999999999


Q ss_pred             cCCCcccccc-------ccH-------HHHhcCCCCcEEEEcCCCcccCH
Q 022672          152 PVLDKTTYHL-------INK-------ERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       152 ~Plt~~t~~l-------i~~-------~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      .+. +...+.       .|.       +.+....|++++|+++  ..+|.
T Consensus        82 ag~-~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~  128 (317)
T 3d0o_A           82 AGA-AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDI  128 (317)
T ss_dssp             CCC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHH
T ss_pred             CCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHH
Confidence            974 322221       011       1223347899999976  44443

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.93  E-value=0.029  Score=51.08  Aligned_cols=107  Identities=19%  Similarity=0.237  Sum_probs=70.5

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           70 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        70 ~l~gktvGIIGlG--~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .+.|.+|++||=|  ++.++++..+ ..||++|....|..-...+.+.+...+.....+   ..+....+++|.++++|+
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDv  239 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEIVKETD---GSVSFTSNLEEALAGADV  239 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHC---CEEEEESCHHHHHTTCSE
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHHccCCE
Confidence            4889999999995  9999999987 579999999887542111111110000011112   123345789999999999


Q ss_pred             EEEccCC-------Ccc-----ccccccHHHHhcC-CCCcEEEEcC
Q 022672          148 ISLHPVL-------DKT-----TYHLINKERLATM-KKEAILVNCS  180 (294)
Q Consensus       148 V~l~~Pl-------t~~-----t~~li~~~~l~~m-k~gailIN~a  180 (294)
                      |..-.=.       .++     ...-++++.++.+ ||+++|..+.
T Consensus       240 vyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L  285 (325)
T 1vlv_A          240 VYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  285 (325)
T ss_dssp             EEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             EEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC
Confidence            9773220       011     1355789999999 9999999985

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.93  E-value=0.016  Score=53.05  Aligned_cols=143  Identities=14%  Similarity=0.141  Sum_probs=88.9

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY   88 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~v   88 (294)
                      +.++-.+|+|-|.-+....++  .+|+=++.+.++.                     |..+.|.+|++||=|  ++.+++
T Consensus       116 ~lA~~s~vPVINa~~~~~HPt--Q~LaDl~Ti~e~~---------------------g~~l~gl~va~vGD~~~~va~Sl  172 (335)
T 1dxh_A          116 ELAKFAGVPVFNGLTDEYHPT--QMLADVLTMREHS---------------------DKPLHDISYAYLGDARNNMGNSL  172 (335)
T ss_dssp             HHHHHSSSCEEEEECSSCCHH--HHHHHHHHHHHTC---------------------SSCGGGCEEEEESCCSSHHHHHH
T ss_pred             HHHHhCCCCEEcCCCCCCCcH--HHHHHHHHHHHHc---------------------CCCcCCeEEEEecCCccchHHHH
Confidence            345566799999776554443  2233333333311                     224889999999996  999999


Q ss_pred             HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC--CCc--c-------
Q 022672           89 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV--LDK--T-------  157 (294)
Q Consensus        89 A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P--lt~--~-------  157 (294)
                      +..+ ..+|++|....|..-...+.+.+...+.....+   ..+....+++|.++++|+|..-.=  ...  +       
T Consensus       173 ~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDvvytd~w~smg~~~e~~~er~~  248 (335)
T 1dxh_A          173 LLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG---AKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIK  248 (335)
T ss_dssp             HHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSEEEECCCSCSSSCGGGCHHHHH
T ss_pred             HHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhCCCCEEEeCCccccCccchhhHHHHH
Confidence            9986 579999999887542211111110000011112   123345799999999999977332  000  0       


Q ss_pred             --ccccccHHHHhcC-CCCcEEEEcC
Q 022672          158 --TYHLINKERLATM-KKEAILVNCS  180 (294)
Q Consensus       158 --t~~li~~~~l~~m-k~gailIN~a  180 (294)
                        ...-++.+.++.+ ||+++|..+.
T Consensus       249 ~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (335)
T 1dxh_A          249 ELLPYQVNMEIMKATGNPRAKFMHCL  274 (335)
T ss_dssp             HHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             HhhcceeCHHHHHhccCCCeEEECCC
Confidence              1245789999999 9999999984

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.93  E-value=0.0037  Score=55.50  Aligned_cols=68  Identities=21%  Similarity=0.302  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .++++.|||.|.+|++++..| ...|+ +|++++|+..+. +.+.+.++          ..+.  .++.  +.++|+|+.
T Consensus       118 ~~~~vlvlGaGgaarav~~~L-~~~G~~~i~v~nRt~~ka-~~la~~~~----------~~~~--~~~~--~~~~DivIn  181 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKTG-QYLAALYG----------YAYI--NSLE--NQQADILVN  181 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHHH-HHHHHHHT----------CEEE--SCCT--TCCCSEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHcC----------Cccc--hhhh--cccCCEEEE
Confidence            468899999999999999998 57887 799999986542 22222111          0111  1222  468999999


Q ss_pred             ccCCC
Q 022672          151 HPVLD  155 (294)
Q Consensus       151 ~~Plt  155 (294)
                      ++|..
T Consensus       182 aTp~g  186 (271)
T 1npy_A          182 VTSIG  186 (271)
T ss_dssp             CSSTT
T ss_pred             CCCCC
Confidence            99954

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.93  E-value=0.015  Score=53.74  Aligned_cols=106  Identities=16%  Similarity=0.195  Sum_probs=69.8

Q ss_pred             cCCCEEEEEcCC--hHHHHHHHHHhhcCCCEEEEEcCCchhH--HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           71 LKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        71 l~gktvGIIGlG--~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.|++|++||=+  ++..+++..+ ..+|++|....|..-..  .+.+.+...+.....+   ..+....+++|.++++|
T Consensus       178 l~glkva~vGD~~nnva~Sl~~~~-~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g---~~i~~~~d~~eav~~aD  253 (365)
T 4amu_A          178 LKNKKIVFIGDYKNNVGVSTMIGA-AFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNG---GSLRFSTDKILAAQDAD  253 (365)
T ss_dssp             CTTCEEEEESSTTSHHHHHHHHHH-HHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHS---CEEEEESCHHHHTTTCS
T ss_pred             CCCCEEEEECCCCcchHHHHHHHH-HHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcC---CEEEEECCHHHHhcCCC
Confidence            889999999987  7888888876 57999999988753221  1122111101111111   12334579999999999


Q ss_pred             EEEEcc--CCCcc-----------ccccccHHHHhcCCCCcEEEEcC
Q 022672          147 VISLHP--VLDKT-----------TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       147 iV~l~~--Plt~~-----------t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +|..-+  ..+.+           ...-++.+.++.+||+++|..+.
T Consensus       254 VVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          254 VIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             EEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred             EEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            998732  11111           12447899999999999999885

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.91  E-value=0.0019  Score=58.44  Aligned_cols=103  Identities=16%  Similarity=0.261  Sum_probs=58.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.+|..+|..|+ ..|. +|..+|...... +.............. .........+. +.+++||+|+++.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la-~~g~~~v~L~Di~~~~~-~g~~~dl~~~~~~~~-~~~~i~~t~d~-~a~~~aD~Vi~a~   78 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLA-AKELGDIVLLDIVEGVP-QGKALDLYEASPIEG-FDVRVTGTNNY-ADTANSDVIVVTS   78 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSSSSHH-HHHHHHHHTTHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCCeEEEEeCCccHH-HHHHHhHHHhHhhcC-CCeEEEECCCH-HHHCCCCEEEEcC
Confidence            58999999999999999874 5565 899999875432 221111111000001 11122223566 6689999999998


Q ss_pred             CCCcccccc-------cc----HH---HHhcCCCCcEEEEcCC
Q 022672          153 VLDKTTYHL-------IN----KE---RLATMKKEAILVNCSR  181 (294)
Q Consensus       153 Plt~~t~~l-------i~----~~---~l~~mk~gailIN~aR  181 (294)
                      +. +...++       .|    ++   .+....|++++++++-
T Consensus        79 g~-p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  120 (309)
T 1ur5_A           79 GA-PRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  120 (309)
T ss_dssp             CC---------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence            63 332221       01    12   2233358899998744

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=96.90  E-value=0.019  Score=51.77  Aligned_cols=141  Identities=13%  Similarity=0.060  Sum_probs=90.4

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC-ChHHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA   89 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA   89 (294)
                      +.++-.+|+|-|.-+....++-  +++=++.+.++.                     | .+.|.+|++||= +++.++.+
T Consensus       116 ~la~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~---------------------g-~l~gl~ia~vGD~~rva~Sl~  171 (301)
T 2ef0_A          116 ALARHAKVPVVNALSDRAHPLQ--ALADLLTLKEVF---------------------G-GLAGLEVAWVGDGNNVLNSLL  171 (301)
T ss_dssp             HHHHHCSSCEEEEECSSCCHHH--HHHHHHHHHHHH---------------------S-CCTTCEEEEESCCCHHHHHHH
T ss_pred             HHHHHCCCCEEeCCCCccCchH--HHHHHHHHHHHh---------------------C-CcCCcEEEEECCCchhHHHHH
Confidence            3445567999998765544432  233333333210                     1 488999999998 88999999


Q ss_pred             HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC-C---C--cc------
Q 022672           90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV-L---D--KT------  157 (294)
Q Consensus        90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P-l---t--~~------  157 (294)
                      ..+ ..||++|....|..-...+.+.+.    +        .+....+++|.++++|+|..-.= .   .  ..      
T Consensus       172 ~~~-~~~g~~v~~~~P~~~~~~~~~~~~----~--------~~~~~~d~~eav~~aDvvy~~~~~smg~~~~~~~~~~~~  238 (301)
T 2ef0_A          172 EVA-PLAGLKVRVATPKGYEPDPGLLKR----A--------NAFFTHDPKEAALGAHALYTDVWTSMGQEAEREKRLRDF  238 (301)
T ss_dssp             HHH-HHHTCEEEEECCTTCCCCHHHHHH----H--------TCEEESCHHHHHTTCSEEEECCCC--------CHHHHHT
T ss_pred             HHH-HHcCCEEEEECCchhcCCHHHHhh----c--------eeEEECCHHHHhcCCCEEEecCcccCCcccchhHHHHHh
Confidence            886 578999999887532111111110    0        02345789999999999977331 0   0  11      


Q ss_pred             ccccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022672          158 TYHLINKERLATMKKEAILVNCS---RGPVIDEV  188 (294)
Q Consensus       158 t~~li~~~~l~~mk~gailIN~a---RG~~vd~~  188 (294)
                      ...-++++.++.+||+++|..+.   ||.=|+.+
T Consensus       239 ~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~e  272 (301)
T 2ef0_A          239 QGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEE  272 (301)
T ss_dssp             TTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             hccccCHHHHHhcCCCcEEECCCCCCCCCccCHH
Confidence            13457899999999999999996   56545444

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.89  E-value=0.005  Score=55.90  Aligned_cols=106  Identities=19%  Similarity=0.198  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCc-hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ..++|+|||.|.+|..+|..|+ ..|. +|..+|+.. ....+............ ...........+ .+.+++||+|+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~-~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~-~~~~~~i~~t~d-~~a~~~aDvVI   83 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLA-QKELADVVLVDIPQLENPTKGKALDMLEASPV-QGFDANIIGTSD-YADTADSDVVV   83 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCGGGHHHHHHHHHHHHHHHHH-HTCCCCEEEESC-GGGGTTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeccchHHHHHHhhhhHHHhhhh-ccCCCEEEEcCC-HHHhCCCCEEE
Confidence            4679999999999999999874 5677 999999974 22222111111000000 001111122233 35689999999


Q ss_pred             EccCCCcccccc-----c--c----H---HHHhcCCCCcEEEEcCC
Q 022672          150 LHPVLDKTTYHL-----I--N----K---ERLATMKKEAILVNCSR  181 (294)
Q Consensus       150 l~~Plt~~t~~l-----i--~----~---~~l~~mk~gailIN~aR  181 (294)
                      ++... +...++     +  |    +   +.+....|++++++++.
T Consensus        84 iaag~-p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           84 ITAGI-ARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             ECCSC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EeCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            99752 222221     1  1    1   12233468999999974

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.88  E-value=0.037  Score=50.15  Aligned_cols=142  Identities=15%  Similarity=0.130  Sum_probs=87.3

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC-ChHHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA   89 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA   89 (294)
                      +.++-.+|+|-|.-+-...++  .+++=++.+.++.                     | .+.|.+|++||= +++.++++
T Consensus       117 ~lA~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------------------g-~l~gl~va~vGD~~rva~Sl~  172 (315)
T 1pvv_A          117 DLAKYATVPVINGLSDFSHPC--QALADYMTIWEKK---------------------G-TIKGVKVVYVGDGNNVAHSLM  172 (315)
T ss_dssp             HHHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHH---------------------S-CCTTCEEEEESCCCHHHHHHH
T ss_pred             HHHHhCCCCEEcCCCCCCCcH--HHHHHHHHHHHHh---------------------C-CcCCcEEEEECCCcchHHHHH
Confidence            344556799999766544443  2233333333210                     1 478999999998 89999999


Q ss_pred             HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC-------Ccc-----
Q 022672           90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL-------DKT-----  157 (294)
Q Consensus        90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl-------t~~-----  157 (294)
                      ..+ ..+|++|....|..-...+.+.+...+.....+   ..+....+++|.++++|+|..-.=-       .++     
T Consensus       173 ~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~  248 (315)
T 1pvv_A          173 IAG-TKLGADVVVATPEGYEPDEKVIKWAEQNAAESG---GSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIF  248 (315)
T ss_dssp             HHH-HHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSEEEECCCCCSSTTSSSSHHHHHH
T ss_pred             HHH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhCCCCEEEEcceeccCcccchHHHHHHH
Confidence            886 579999999887532111111110000001111   1233457899999999999773320       011     


Q ss_pred             ccccccHHHHhcCCCCcEEEEcC
Q 022672          158 TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       158 t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ...-++.+.++.+||+++|..+.
T Consensus       249 ~~y~v~~ell~~a~~~ai~mH~l  271 (315)
T 1pvv_A          249 RPFQVNKDLVKHAKPDYMFMHCL  271 (315)
T ss_dssp             GGGCBCHHHHHTSCTTCEEEECS
T ss_pred             HhcCCCHHHHhhcCCCcEEECCC
Confidence            12457899999999999999985

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.87  E-value=0.017  Score=52.55  Aligned_cols=142  Identities=16%  Similarity=0.099  Sum_probs=85.2

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC-hHHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA   89 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA   89 (294)
                      +.++-.+|+|-|.-+....++-  +++=++.+.++.                     | .+.|.+|++||=| ++.++++
T Consensus       117 ~lA~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~---------------------g-~l~gl~va~vGD~~~va~Sl~  172 (321)
T 1oth_A          117 TLAKEASIPIINGLSDLYHPIQ--ILADYLTLQEHY---------------------S-SLKGLTLSWIGDGNNILHSIM  172 (321)
T ss_dssp             HHHHHCSSCEEESCCSSCCHHH--HHHHHHHHHHHH---------------------S-CCTTCEEEEESCSSHHHHHHH
T ss_pred             HHHHhCCCCEEcCCCCCCCcHH--HHHHHHHHHHHh---------------------C-CcCCcEEEEECCchhhHHHHH
Confidence            3455667999998765555432  233333333211                     1 4889999999985 4777777


Q ss_pred             HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc----CCCcc--------
Q 022672           90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP----VLDKT--------  157 (294)
Q Consensus        90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~----Plt~~--------  157 (294)
                      ..+ ..||++|....|..-...+.+.+...+.....+   ..+....+++|.++++|+|..-+    ....+        
T Consensus       173 ~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~  248 (321)
T 1oth_A          173 MSA-AKFGMHLQAATPKGYEPDASVTKLAEQYAKENG---TKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAF  248 (321)
T ss_dssp             TTT-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHT
T ss_pred             HHH-HHcCCeEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhc
Confidence            664 578999999887532111111110000011112   12334578999999999998833    11111        


Q ss_pred             ccccccHHHHhcCCCCcEEEEcC
Q 022672          158 TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       158 t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ...-++.+.++.+||+++|..+.
T Consensus       249 ~~y~v~~~~l~~a~~dai~mH~l  271 (321)
T 1oth_A          249 QGYQVTMKTAKVAASDWTFLHCL  271 (321)
T ss_dssp             TTCCBCHHHHHTSCTTCEEEECS
T ss_pred             cCceECHHHHhhcCCCCEEECCC
Confidence            11446888999999999999874

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.87  E-value=0.0034  Score=57.03  Aligned_cols=123  Identities=18%  Similarity=0.197  Sum_probs=64.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+|+|||.|.+|.++|-.|+ ..+.  +|..+|...... +.......... . ........ ..+ .+.+++||+|+++
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~-~~~~~~ev~L~Di~~~~~-~g~~~dl~~~~-~-~~~~~~i~-~~~-~~a~~~aDvVii~   81 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMA-LRQTANELVLIDVFKEKA-IGEAMDINHGL-P-FMGQMSLY-AGD-YSDVKDCDVIVVT   81 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HTTCSSEEEEECCC---C-CHHHHHHTTSC-C-CTTCEEEC---C-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCChHHH-HHHHHHHHHhH-H-hcCCeEEE-ECC-HHHhCCCCEEEEc
Confidence            57999999999999998874 4455  999999875332 11111110000 0 00111121 123 4568999999999


Q ss_pred             cCCCcccccc-------cc----H---HHHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHcCCcceE--Eee
Q 022672          152 PVLDKTTYHL-------IN----K---ERLATMKKEAILVNCSRGPVIDEVA--LVEH--LKQNPMFRV--GLD  205 (294)
Q Consensus       152 ~Plt~~t~~l-------i~----~---~~l~~mk~gailIN~aRG~~vd~~a--L~~a--L~~g~i~ga--~lD  205 (294)
                      .+. +...++       .|    .   +.+....|++++|+++  ..+|.-.  +.+.  +...++.|.  .||
T Consensus        82 ~g~-p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~~~~~~k~s~~p~~rviG~gt~Ld  152 (318)
T 1y6j_A           82 AGA-NRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS--NPVDIITYMIQKWSGLPVGKVIGSGTVLD  152 (318)
T ss_dssp             CCC-------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS--SSHHHHHHHHHHHHTCCTTTEEECTTHHH
T ss_pred             CCC-CCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHcCCCHHHEeccCCchH
Confidence            984 332222       01    1   1222236899999974  3444333  3332  233356565  256

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.84  E-value=0.0028  Score=54.38  Aligned_cols=92  Identities=10%  Similarity=0.178  Sum_probs=56.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccC---CHHHH-hhcCCEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEV-LREADVI  148 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~el-l~~aDiV  148 (294)
                      .+++.|+|+|.+|+.+|+.| ...|. |+++|+++... +..        . .+ ...-.-...   .+++. +.++|.|
T Consensus         9 ~~~viI~G~G~~G~~la~~L-~~~g~-v~vid~~~~~~-~~~--------~-~~-~~~i~gd~~~~~~l~~a~i~~ad~v   75 (234)
T 2aef_A            9 SRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVRK-KVL--------R-SG-ANFVHGDPTRVSDLEKANVRGARAV   75 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHS-TTSEE-EEEESCGGGHH-HHH--------H-TT-CEEEESCTTCHHHHHHTTCTTCSEE
T ss_pred             CCEEEEECCChHHHHHHHHH-HhCCe-EEEEECCHHHH-HHH--------h-cC-CeEEEcCCCCHHHHHhcCcchhcEE
Confidence            45799999999999999997 67788 99999876532 111        1 01 000000112   23344 6789999


Q ss_pred             EEccCCCccccccccHHHHhcCCCC-cEEEEc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKE-AILVNC  179 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~g-ailIN~  179 (294)
                      ++++|..  ...+.-....+.+.++ .+++.+
T Consensus        76 i~~~~~d--~~n~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           76 IVDLESD--SETIHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             EECCSCH--HHHHHHHHHHHHHCSSSEEEEEC
T ss_pred             EEcCCCc--HHHHHHHHHHHHHCCCCeEEEEE
Confidence            9999843  3334445556667777 444444

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.84  E-value=0.0033  Score=57.40  Aligned_cols=107  Identities=20%  Similarity=0.267  Sum_probs=61.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .++|+|||.|.||.++|..|+ ..|.  ++..+|...........+ ..... .........  ..+..+.+++||+|++
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~-~~~~~~~l~l~D~~~~k~~g~a~D-L~~~~-~~~~~~v~i--~~~~~~a~~~aDvVvi   79 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALI-NQGITDELVVIDVNKEKAMGDVMD-LNHGK-AFAPQPVKT--SYGTYEDCKDADIVCI   79 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSCHHHHHHHHHH-HHHTG-GGSSSCCEE--EEECGGGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCceEEEEecchHHHHHHHHH-HHhcc-ccccCCeEE--EeCcHHHhCCCCEEEE
Confidence            568999999999999999874 4454  899999875432211111 10000 000011111  1222357899999999


Q ss_pred             ccCCCcccccc-----c--cH-------HHHhcCCCCcEEEEcCCCcccCH
Q 022672          151 HPVLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       151 ~~Plt~~t~~l-----i--~~-------~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      +.+. +...++     +  |.       +.+....|++++++++-  .+|.
T Consensus        80 ~ag~-p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN--Pvd~  127 (326)
T 3pqe_A           80 CAGA-NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN--PVDI  127 (326)
T ss_dssp             CCSC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS--SHHH
T ss_pred             eccc-CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC--hHHH
Confidence            9863 332222     1  11       12334568999999974  4443

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.84  E-value=0.0013  Score=59.52  Aligned_cols=98  Identities=11%  Similarity=0.118  Sum_probs=56.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .++|+|||.|.+|..+|..++ ..|.  +|..+|.... ......+..     .....  ......++ +.+++||+|++
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~-~~g~~~ev~L~Di~~~-~~g~a~dl~-----~~~~~--~i~~t~d~-~~l~~aD~Vi~   83 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAIS-AKGIADRLVLLDLSEG-TKGATMDLE-----IFNLP--NVEISKDL-SASAHSKVVIF   83 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECCC------CHHHHH-----HHTCT--TEEEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEcCCcc-hHHHHHHHh-----hhcCC--CeEEeCCH-HHHCCCCEEEE
Confidence            478999999999999998874 3455  9999998764 221111111     01111  12223566 66899999999


Q ss_pred             ccCCCc----------ccccc---ccHHHHhcCCCCcEEEEcCC
Q 022672          151 HPVLDK----------TTYHL---INKERLATMKKEAILVNCSR  181 (294)
Q Consensus       151 ~~Plt~----------~t~~l---i~~~~l~~mk~gailIN~aR  181 (294)
                      +.....          ++..+   +-++.-+. .|++++++++.
T Consensus        84 aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~sN  126 (303)
T 2i6t_A           84 TVNSLGSSQSYLDVVQSNVDMFRALVPALGHY-SQHSVLLVASQ  126 (303)
T ss_dssp             CCCC----CCHHHHHHHHHHHHHHHHHHHHHH-TTTCEEEECSS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcCC
Confidence            973210          11111   11222232 48999999876

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.83  E-value=0.0033  Score=57.28  Aligned_cols=69  Identities=12%  Similarity=0.125  Sum_probs=46.6

Q ss_pred             CEEEEEcCChHHHH-HHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 022672           74 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~-vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  149 (294)
                      .++||||+|.||+. .+..+...-+++|+ ++|+++.. .+.+.+.++       .    ...+.+++++++  +.|+|+
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~-a~~~a~~~g-------~----~~~y~d~~ell~~~~iDaV~   91 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTR-AREMADRFS-------V----PHAFGSYEEMLASDVIDAVY   91 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHH-HHHHHHHHT-------C----SEEESSHHHHHHCSSCSEEE
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHH-HHHHHHHcC-------C----CeeeCCHHHHhcCCCCCEEE
Confidence            37999999999985 46665334478877 47887643 233333221       1    123579999995  479999


Q ss_pred             EccCC
Q 022672          150 LHPVL  154 (294)
Q Consensus       150 l~~Pl  154 (294)
                      +|+|.
T Consensus        92 I~tP~   96 (350)
T 4had_A           92 IPLPT   96 (350)
T ss_dssp             ECSCG
T ss_pred             EeCCC
Confidence            99993

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.83  E-value=0.019  Score=51.60  Aligned_cols=135  Identities=17%  Similarity=0.188  Sum_probs=86.6

Q ss_pred             HHHHhCCcEEEeC-CCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC---ChHHH
Q 022672           11 NAANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA---GRIGS   86 (294)
Q Consensus        11 ~~~~~~gI~v~n~-~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl---G~IG~   86 (294)
                      +.++-.+|+|-|. -|....++-  +++=++.+.++.                     | .+.|++|++||=   +++.+
T Consensus       110 ~la~~~~vPVINaG~g~~~HPtQ--~LaDl~Ti~e~~---------------------g-~l~gl~va~vGD~~~~rva~  165 (299)
T 1pg5_A          110 FASEISDIPVINAGDGKHEHPTQ--AVIDIYTINKHF---------------------N-TIDGLVFALLGDLKYARTVN  165 (299)
T ss_dssp             HHHHHCSSCEEEEEETTTBCHHH--HHHHHHHHHHHH---------------------S-CSTTCEEEEEECCSSCHHHH
T ss_pred             HHHHhCCCCEEeCCCCCCcCcHH--HHHHHHHHHHHh---------------------C-CcCCcEEEEECCCCCCchHH
Confidence            3455667999998 555544432  222233332210                     1 478999999998   59999


Q ss_pred             HHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc--------
Q 022672           87 AYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT--------  157 (294)
Q Consensus        87 ~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~--------  157 (294)
                      +++..+ ..+ |++|....|..-...+.+       +...+   ..+....+++|.++++|+|..-.=-.+.        
T Consensus       166 Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~-------~~~~g---~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~  234 (299)
T 1pg5_A          166 SLLRIL-TRFRPKLVYLISPQLLRARKEI-------LDELN---YPVKEVENPFEVINEVDVLYVTRIQKERFVDEMEYE  234 (299)
T ss_dssp             HHHHHG-GGSCCSEEEEECCGGGCCCHHH-------HTTCC---SCEEEESCGGGTGGGCSEEEEECCCSTTSSCHHHHH
T ss_pred             HHHHHH-HhCCCCEEEEECCchhcCCHHH-------HHHcC---CeEEEeCCHHHHhcCCCEEEeCCcccccccCHHHHH
Confidence            999986 578 999999887532111111       11111   2233457899999999999665432211        


Q ss_pred             ---ccccccHHHHhcCCCCcEEEEcC
Q 022672          158 ---TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       158 ---t~~li~~~~l~~mk~gailIN~a  180 (294)
                         ...-++.+.++.+||+++|..+.
T Consensus       235 ~~~~~y~v~~~~l~~a~~~ai~mH~l  260 (299)
T 1pg5_A          235 KIKGSYIVSLDLANKMKKDSIILHPL  260 (299)
T ss_dssp             HHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             HhhcCcccCHHHHHhcCCCCEEECCC
Confidence               02456889999999999999884

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.83  E-value=0.0016  Score=59.56  Aligned_cols=104  Identities=7%  Similarity=0.020  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ..++|+|||.|.||..+|..++ ..|.  +|..+|...........+-. ..... . .........+.++ +++||+|+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la-~~g~~~ev~L~Di~~~~~~g~a~DL~-~~~~~-~-~~~~i~~t~d~~~-~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVL-MKDLADEVALVDVMEDKLKGEMMDLE-HGSLF-L-HTAKIVSGKDYSV-SAGSKLVV   94 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHH-HHCCCSEEEEECSCHHHHHHHHHHHH-HHGGG-S-CCSEEEEESSSCS-CSSCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEECCHHHHHHHHHHhh-hhhhc-c-cCCeEEEcCCHHH-hCCCCEEE
Confidence            5689999999999999999874 4455  89999987643222111110 00000 0 1111222346665 89999999


Q ss_pred             EccCCCcccccc-----c--cH-------HHHhcCCCCcEEEEcCC
Q 022672          150 LHPVLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSR  181 (294)
Q Consensus       150 l~~Plt~~t~~l-----i--~~-------~~l~~mk~gailIN~aR  181 (294)
                      ++... +...++     +  |.       +.+....|++++++++.
T Consensus        95 itaG~-p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           95 ITAGA-RQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             ECCSC-CCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EeCCC-CCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            98653 322211     1  11       12334478999999974

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.82  E-value=0.015  Score=53.19  Aligned_cols=143  Identities=14%  Similarity=0.087  Sum_probs=88.1

Q ss_pred             HHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHHHH
Q 022672           12 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYA   89 (294)
Q Consensus        12 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA   89 (294)
                      .++-.+|+|-|.-+....++-  +|+=++.+.+++                    .|..+.|.+|++||=|  ++.++++
T Consensus       116 lA~~~~vPVINa~~~~~HPtQ--~LaDl~Ti~e~~--------------------~g~~l~gl~ia~vGD~~~~va~Sl~  173 (333)
T 1duv_G          116 LAEYASVPVWNGLTNEFHPTQ--LLADLLTMQEHL--------------------PGKAFNEMTLVYAGDARNNMGNSML  173 (333)
T ss_dssp             HHHHHSSCEEESCCSSCCHHH--HHHHHHHHHHHS--------------------TTCCGGGCEEEEESCTTSHHHHHHH
T ss_pred             HHHhCCCCeEcCCCCCCCchH--HHHHHHHHHHHh--------------------cCCCCCCcEEEEECCCccchHHHHH
Confidence            344557999998765544432  233333333210                    1224889999999986  9999999


Q ss_pred             HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC-C-Cc------c----
Q 022672           90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV-L-DK------T----  157 (294)
Q Consensus        90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P-l-t~------~----  157 (294)
                      ..+ ..+|++|....|..-...+.+.+...+.....+   ..+....++++.++++|+|..-.= . ..      +    
T Consensus       174 ~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er~~~  249 (333)
T 1duv_G          174 EAA-ALTGLDLRLVAPQACWPEAALVTECRALAQQNG---GNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIAL  249 (333)
T ss_dssp             HHH-HHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTT---CEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHH
T ss_pred             HHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhCCCCEEEeCCccccCccccchHHHHHH
Confidence            986 578999999887542211111110000011112   123345799999999999977332 0 00      0    


Q ss_pred             -ccccccHHHHhcC-CCCcEEEEcC
Q 022672          158 -TYHLINKERLATM-KKEAILVNCS  180 (294)
Q Consensus       158 -t~~li~~~~l~~m-k~gailIN~a  180 (294)
                       ...-++.+.++.+ ||+++|..+.
T Consensus       250 ~~~y~v~~~ll~~a~~~~ai~mHcL  274 (333)
T 1duv_G          250 LREYQVNSKMMQLTGNPEVKFLHCL  274 (333)
T ss_dssp             HGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             hhccccCHHHHHhccCCCcEEECCC
Confidence             1245789999999 9999999984

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.81  E-value=0.0036  Score=57.09  Aligned_cols=106  Identities=16%  Similarity=0.280  Sum_probs=60.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ...++|+|||.|.+|.++|..|+ ..|. +|..||...........+ ......... .........+. +.+++||+|+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~-~~~~~~v~L~Di~~~~~~g~~~d-l~~~~~~~~-~~~~v~~t~d~-~a~~~aDiVI   80 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAG-LKELGDVVLFDIAEGTPQGKGLD-IAESSPVDG-FDAKFTGANDY-AAIEGADVVI   80 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHHHHHHHH-HHHHHHHHT-CCCCEEEESSG-GGGTTCSEEE
T ss_pred             CcCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCchhHHHHHHH-HhchhhhcC-CCCEEEEeCCH-HHHCCCCEEE
Confidence            45679999999999999999874 4555 999999876542111111 000000000 11112222455 6789999999


Q ss_pred             EccCCCcccccc-----c--cH-------HHHhcCCCCcEEEEcCC
Q 022672          150 LHPVLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSR  181 (294)
Q Consensus       150 l~~Plt~~t~~l-----i--~~-------~~l~~mk~gailIN~aR  181 (294)
                      ++.+. +...++     +  |.       +.+....|++++++++.
T Consensus        81 iaag~-p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           81 VTAGV-PRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             ECCSC-CCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EccCc-CCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            99762 322222     1  11       12233358999999974

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.79  E-value=0.0012  Score=56.83  Aligned_cols=67  Identities=15%  Similarity=0.262  Sum_probs=42.5

Q ss_pred             CEEEEEcCChHHHHHHHH-HhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARM-MVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~-L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ++++|||.|.+|+.+++. .....|+++.+ +|..+.....             ......+....++++++++.|+++++
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~-------------~i~gv~V~~~~dl~eli~~~D~ViIA  152 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGT-------------EVGGVPVYNLDDLEQHVKDESVAILT  152 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTC-------------EETTEEEEEGGGHHHHCSSCCEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHh-------------HhcCCeeechhhHHHHHHhCCEEEEe
Confidence            579999999999999994 22356787664 6766543110             00112233456899999777999999


Q ss_pred             cC
Q 022672          152 PV  153 (294)
Q Consensus       152 ~P  153 (294)
                      +|
T Consensus       153 vP  154 (215)
T 2vt3_A          153 VP  154 (215)
T ss_dssp             SC
T ss_pred             cC
Confidence            99

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.79  E-value=0.0033  Score=57.75  Aligned_cols=79  Identities=15%  Similarity=0.158  Sum_probs=44.3

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhc--C---CCCccccccCCHHHHhhcCCEE
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKAN--G---EQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      +|||+|+|.||+.+++.|...-++++.+ .|+...... ......+-.....  .   -...+.....++++++.++|+|
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~-~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEA-FIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHH-HHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHH-HHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            7999999999999999875444788765 455432211 1111000000000  0   0000111223667777899999


Q ss_pred             EEccCC
Q 022672          149 SLHPVL  154 (294)
Q Consensus       149 ~l~~Pl  154 (294)
                      +.|+|.
T Consensus        82 ~~aTp~   87 (340)
T 1b7g_O           82 VDTTPN   87 (340)
T ss_dssp             EECCST
T ss_pred             EECCCC
Confidence            999984

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.79  E-value=0.033  Score=50.96  Aligned_cols=142  Identities=16%  Similarity=0.097  Sum_probs=84.9

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC-ChHHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA   89 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA   89 (294)
                      +.++..+|+|-|.-+....++  .+++=++.+.++.                     | .+.|++|++||= +++.++++
T Consensus       141 ~lA~~~~vPVINag~~~~HPt--QaLaDl~TI~E~~---------------------G-~l~glkva~vGD~~nva~Sl~  196 (340)
T 4ep1_A          141 ELAKESSIPVINGLTDDHHPC--QALADLMTIYEET---------------------N-TFKGIKLAYVGDGNNVCHSLL  196 (340)
T ss_dssp             HHHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHH---------------------S-CCTTCEEEEESCCCHHHHHHH
T ss_pred             HHHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh---------------------C-CCCCCEEEEECCCchhHHHHH
Confidence            345667899999765443333  2222223332210                     1 388999999997 56778888


Q ss_pred             HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCC----cc-------c
Q 022672           90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD----KT-------T  158 (294)
Q Consensus        90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt----~~-------t  158 (294)
                      ..+ ..||++|....|..-...+.+.+...+.....+   ..+....+++|.++++|+|..-.=-.    .+       .
T Consensus       197 ~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDVvyt~~w~smg~e~~~~~~~~~~  272 (340)
T 4ep1_A          197 LAS-AKVGMHMTVATPVGYRPNEEIVKKALAIAKETG---AEIEILHNPELAVNEADFIYTDVWMSMGQEGEEEKYTLFQ  272 (340)
T ss_dssp             HHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHC---CCEEEESCHHHHHTTCSEEEECCC------CHHHHHHHHG
T ss_pred             HHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEECCHHHHhCCCCEEEecCccCCCCCchHHHHHHhc
Confidence            776 578999998877532111111111000011112   11334578999999999997644211    00       1


Q ss_pred             cccccHHHHhcCCCCcEEEEcC
Q 022672          159 YHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       159 ~~li~~~~l~~mk~gailIN~a  180 (294)
                      ..-++.+.++.+|++++|..+.
T Consensus       273 ~y~vt~ell~~ak~dai~MHcL  294 (340)
T 4ep1_A          273 PYQINKELVKHAKQTYHFLHCL  294 (340)
T ss_dssp             GGCBCHHHHTTSCTTCEEEECS
T ss_pred             cccCCHHHHHhcCCCcEEECCC
Confidence            2457899999999999999986

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.79  E-value=0.0061  Score=55.31  Aligned_cols=108  Identities=16%  Similarity=0.219  Sum_probs=60.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ++|+|||.|.||.++|..|+ ..+.  ++..+|...........+ ......... ....... .+..+.+++||+|+++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~-~~~~~~el~l~D~~~~k~~g~a~D-L~~~~~~~~-~~~~v~~-~~~~~a~~~aDvVii~   76 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVA-RQDVAKEVVMVDIKDGMPQGKALD-MRESSPIHG-FDTRVTG-TNDYGPTEDSDVCIIT   76 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCSSEEEEECSSTTHHHHHHHH-HHHHHHHHT-CCCEEEE-ESSSGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCchHHHHHHHHH-HhccccccC-CCcEEEE-CCCHHHhCCCCEEEEC
Confidence            47999999999999999874 3344  899999876432211111 000000000 0111111 1345778999999999


Q ss_pred             cCCCcccccc-----c--cH-------HHHhcCCCCcEEEEcCCCcccCHH
Q 022672          152 PVLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSRGPVIDEV  188 (294)
Q Consensus       152 ~Plt~~t~~l-----i--~~-------~~l~~mk~gailIN~aRG~~vd~~  188 (294)
                      .+. +...++     +  |.       +.+....|++++++++.  .+|.-
T Consensus        77 ag~-~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN--Pvd~~  124 (314)
T 3nep_X           77 AGL-PRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN--PLDVM  124 (314)
T ss_dssp             CCC--------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS--SHHHH
T ss_pred             CCC-CCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC--chhHH
Confidence            863 322221     1  11       23344578999999974  44443

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.78  E-value=0.0029  Score=57.56  Aligned_cols=106  Identities=18%  Similarity=0.193  Sum_probs=59.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .+|+|||.|.+|.+++..|+. +..-++..+|...... +.......... ... .+....  .+..+.+++||+|+++.
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~-~g~~~dl~~~~-~~~-~~~~v~--~~~~~a~~~aDvVii~a   80 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT-KGDALDLEDAQ-AFT-APKKIY--SGEYSDCKDADLVVITA   80 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH-HHHHHHHHGGG-GGS-CCCEEE--ECCGGGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHH-HHHHHHHHHHH-Hhc-CCeEEE--ECCHHHhCCCCEEEECC
Confidence            689999999999999988743 2334899999865432 22111111111 011 122121  23456689999999998


Q ss_pred             CCCcccccc-------ccH-------HHHhcCCCCcEEEEcCCCcccCH
Q 022672          153 VLDKTTYHL-------INK-------ERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       153 Plt~~t~~l-------i~~-------~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      +. +...++       .|.       +.+....|++++++++  ..+|.
T Consensus        81 g~-~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~  126 (318)
T 1ez4_A           81 GA-PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA--NPVDI  126 (318)
T ss_dssp             CC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHH
T ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC--CcHHH
Confidence            74 322221       111       2223347899999984  44443

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.76  E-value=0.0048  Score=55.98  Aligned_cols=108  Identities=12%  Similarity=0.122  Sum_probs=62.2

Q ss_pred             CEEEEEcCChHHH-HHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 022672           74 QTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~-~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  149 (294)
                      .+|||||+|.+|. .+++.| +..+++++ ++|++.... +.+.+.+       +    +...+.+++++++  +.|+|+
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l-~~~~~~lvav~d~~~~~~-~~~a~~~-------~----~~~~~~~~~~ll~~~~~D~V~   71 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQL-IDAGAELAGVFESDSDNR-AKFTSLF-------P----SVPFAASAEQLITDASIDLIA   71 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHH-HHTTCEEEEEECSCTTSC-HHHHHHS-------T----TCCBCSCHHHHHTCTTCCEEE
T ss_pred             cEEEEECCChHHHHHhhhhh-cCCCcEEEEEeCCCHHHH-HHHHHhc-------C----CCcccCCHHHHhhCCCCCEEE
Confidence            4799999999996 677776 45688864 688876432 2222211       1    1124578999996  689999


Q ss_pred             EccCCCccccccccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vd~~aL~~aL~~g~i  199 (294)
                      +|+|.  .++.   +-..+.|+.|. +++.- ---.+-+.++|.++.++..+
T Consensus        72 i~tp~--~~h~---~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~  118 (336)
T 2p2s_A           72 CAVIP--CDRA---ELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGR  118 (336)
T ss_dssp             ECSCG--GGHH---HHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCC
T ss_pred             EeCCh--hhHH---HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence            99993  2222   22223344454 45542 11222334455655554433

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.75  E-value=0.0023  Score=62.91  Aligned_cols=129  Identities=16%  Similarity=0.165  Sum_probs=78.1

Q ss_pred             CcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcC
Q 022672           27 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDL  105 (294)
Q Consensus        27 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~  105 (294)
                      .....||.+.-+-|-+.|             |+-|....  ...|++++|.|||+|.+|..+|+.|+ ..|+ ++..+|.
T Consensus       295 dp~~la~~~~~Lnlklm~-------------wRllp~~g--~ekL~~arVLIVGaGGLGs~vA~~La-~aGVG~ItLvD~  358 (615)
T 4gsl_A          295 DPLKIADQSVDLNLKLMK-------------WRILPDLN--LDIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDN  358 (615)
T ss_dssp             CHHHHHHHHHHHHHHHHH-------------HHTCTTCC--HHHHHTCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred             CHHHHHhhhhhhhhHHHH-------------Hhhcchhh--HHHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcC
Confidence            455677777766555554             22232211  13689999999999999999999985 6676 6888886


Q ss_pred             Cch------------------hHHHHHHhhhhhhhhhcCCCCccccc---------------------cCCHHHHhhcCC
Q 022672          106 YQA------------------TRLEKFVTAYGQFLKANGEQPVTWKR---------------------ASSMDEVLREAD  146 (294)
Q Consensus       106 ~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~ell~~aD  146 (294)
                      ..-                  ...+...    +.+.... ..+.+..                     ...++++++++|
T Consensus       359 D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa----~~L~~iN-P~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~D  433 (615)
T 4gsl_A          359 GTVSYSNPVRQALYNFEDCGKPKAELAA----ASLKRIF-PLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHD  433 (615)
T ss_dssp             CBCCTTGGGTSTTCCGGGTTSBHHHHHH----HHHHHHC-TTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCS
T ss_pred             CCCcccCcccccCCChhhcChHHHHHHH----HHHHhhC-CCcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCC
Confidence            431                  0011111    1111111 1111111                     123567899999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +|+.|+- +.+++.+++......   +..+|+.+
T Consensus       434 lVvd~tD-n~~tR~~ln~~c~~~---~~PlI~aa  463 (615)
T 4gsl_A          434 IIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  463 (615)
T ss_dssp             EEEECCS-SGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred             EEEecCC-CHHHHHHHHHHHHHc---CCeEEEEE
Confidence            9999986 677888887765543   44567754

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.73  E-value=0.043  Score=49.42  Aligned_cols=128  Identities=20%  Similarity=0.259  Sum_probs=82.7

Q ss_pred             HHHHhCCcEEEeCC-CCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC---hHHH
Q 022672           11 NAANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG---RIGS   86 (294)
Q Consensus        11 ~~~~~~gI~v~n~~-~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG---~IG~   86 (294)
                      +.++..+|+|-|.- |....++-  +++=++.+.++.                     | .+.|++|++||=|   ++.+
T Consensus       108 ~la~~~~vPVINagdg~~~HPtQ--aLaDl~Ti~e~~---------------------g-~l~glkva~vGD~~~~rva~  163 (304)
T 3r7f_A          108 ELVSQVNIPILNAGDGCGQHPTQ--SLLDLMTIYEEF---------------------N-TFKGLTVSIHGDIKHSRVAR  163 (304)
T ss_dssp             HHHHHCSSCEEESCCTTSCCHHH--HHHHHHHHHHHH---------------------S-CCTTCEEEEESCCTTCHHHH
T ss_pred             HHHHhCCCCEEeCCCCCCcCcHH--HHHHHHHHHHHh---------------------C-CCCCCEEEEEcCCCCcchHH
Confidence            34555789999985 45444432  222223332211                     1 4789999999985   6999


Q ss_pred             HHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCcc---------
Q 022672           87 AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT---------  157 (294)
Q Consensus        87 ~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~---------  157 (294)
                      +++..+ ..||++|....|..-.. +              ....+  ...+++|.++++|+|..-.--.+.         
T Consensus       164 Sl~~~~-~~~G~~v~~~~P~~~~~-~--------------~~~~g--~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~  225 (304)
T 3r7f_A          164 SNAEVL-TRLGARVLFSGPSEWQD-E--------------ENTFG--TYVSMDEAVESSDVVMLLRIQNERHQSAVSQEG  225 (304)
T ss_dssp             HHHHHH-HHTTCEEEEESCGGGSC-T--------------TCSSC--EECCHHHHHHHCSEEEECCCCTTTCCSSCCSTT
T ss_pred             HHHHHH-HHcCCEEEEECCCccCc-c--------------hhhcC--ccCCHHHHhCCCCEEEeccchhhccccchhHHH
Confidence            999986 57999999887743110 0              00111  235899999999999874321110         


Q ss_pred             --ccccccHHHHhcCCCCcEEEEcC
Q 022672          158 --TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       158 --t~~li~~~~l~~mk~gailIN~a  180 (294)
                        ...-++.+.++.+|++++|..+.
T Consensus       226 ~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          226 YLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             HHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             HhCCCccCHHHHhhcCCCCEEECCC
Confidence              12347888999999999999874

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.70  E-value=0.0018  Score=61.77  Aligned_cols=76  Identities=9%  Similarity=0.123  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhcCCEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+++|+|+|.|.||+.+++.|+ ..|.+|.++|++.... +.+...++      ....  .......+++++++++|+|+
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~-~~G~~V~v~~R~~~~a-~~la~~~~------~~~~~~~Dv~d~~~l~~~l~~~DvVI   73 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLT-DSGIKVTVACRTLESA-KKLSAGVQ------HSTPISLDVNDDAALDAEVAKHDLVI   73 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHH-TTTCEEEEEESSHHHH-HHTTTTCT------TEEEEECCTTCHHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCcCEEEEEECCHHHH-HHHHHhcC------CceEEEeecCCHHHHHHHHcCCcEEE
Confidence            3689999999999999999984 6889999999876432 11111000      0000  01111125667888999999


Q ss_pred             EccCCC
Q 022672          150 LHPVLD  155 (294)
Q Consensus       150 l~~Plt  155 (294)
                      .+.|..
T Consensus        74 n~a~~~   79 (450)
T 1ff9_A           74 SLIPYT   79 (450)
T ss_dssp             ECCC--
T ss_pred             ECCccc
Confidence            999853

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.70  E-value=0.0041  Score=56.74  Aligned_cols=107  Identities=19%  Similarity=0.223  Sum_probs=59.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .++|+|||.|.+|.+++..|+. +..-++..+|...........+ ..... ... .+....  .+..+.+++||+|+++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~d-l~~~~-~~~-~~~~i~--~~~~~a~~~aDvVii~   83 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAID-LSNAL-PFT-SPKKIY--SAEYSDAKDADLVVIT   83 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHH-HHTTG-GGS-CCCEEE--ECCGGGGGGCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHH-HHHHH-Hhc-CCeEEE--ECCHHHhCCCCEEEEc
Confidence            3689999999999999988742 3334899999865432211111 11100 001 112121  2345668999999999


Q ss_pred             cCCCcccccc-------ccH-------HHHhcCCCCcEEEEcCCCcccCH
Q 022672          152 PVLDKTTYHL-------INK-------ERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       152 ~Plt~~t~~l-------i~~-------~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      .+. +...++       .|.       +.+....|++++++++  ..+|.
T Consensus        84 ag~-~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~  130 (326)
T 2zqz_A           84 AGA-PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDI  130 (326)
T ss_dssp             CCC-C-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS--SSHHH
T ss_pred             CCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CcHHH
Confidence            874 332222       111       1222236899999984  44444

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.70  E-value=0.0025  Score=61.06  Aligned_cols=80  Identities=13%  Similarity=0.265  Sum_probs=50.4

Q ss_pred             CCEEEEEcCChH-HHHHHHHHhh---cC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           73 GQTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        73 gktvGIIGlG~I-G~~vA~~L~~---~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .++|+|||.|.. |.++|..|++   ++ +.+|..||+..... +...+ ...........+.......++++.+++||+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~-~~~~~-~~~~~l~~~~~~~~I~~t~D~~eal~~AD~  105 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQ-DRIAG-ACDVFIREKAPDIEFAATTDPEEAFTDVDF  105 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHH-HHHHH-HHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHH-HHHHH-HHHHHhccCCCCCEEEEECCHHHHHcCCCE
Confidence            458999999998 6667765543   34 66899999976532 22111 111111111123333444688899999999


Q ss_pred             EEEccCC
Q 022672          148 ISLHPVL  154 (294)
Q Consensus       148 V~l~~Pl  154 (294)
                      |++++|.
T Consensus       106 VViaag~  112 (472)
T 1u8x_X          106 VMAHIRV  112 (472)
T ss_dssp             EEECCCT
T ss_pred             EEEcCCC
Confidence            9999984

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=96.68  E-value=0.0048  Score=58.76  Aligned_cols=80  Identities=13%  Similarity=0.149  Sum_probs=51.0

Q ss_pred             CCEEEEEcCChH-HHHHHHHHhh---cC-CCEEEEEcCCc--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           73 GQTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        73 gktvGIIGlG~I-G~~vA~~L~~---~~-g~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      ..+|+|||.|.. |.+++..|++   .+ +-+|..||...  ... +...+ ....+......+..+....++++.+++|
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~-~~~~~-~~~~~~~~~~~~~~i~~t~D~~eal~gA   84 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKL-EIVGA-LAKRMVEKAGVPIEIHLTLDRRRALDGA   84 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHH-HHHHH-HHHHHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHH-HHHHH-HHHHHHhhcCCCcEEEEeCCHHHHhCCC
Confidence            358999999999 8887766543   34 56899999976  432 21111 1111111112233344446888999999


Q ss_pred             CEEEEccCC
Q 022672          146 DVISLHPVL  154 (294)
Q Consensus       146 DiV~l~~Pl  154 (294)
                      |+|+++.|.
T Consensus        85 D~VVitagv   93 (450)
T 1s6y_A           85 DFVTTQFRV   93 (450)
T ss_dssp             SEEEECCCT
T ss_pred             CEEEEcCCC
Confidence            999999984

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.68  E-value=0.0043  Score=57.96  Aligned_cols=93  Identities=16%  Similarity=0.131  Sum_probs=67.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      -.++-|+|.|.+|+++++.+ +.+|++|+++|++..-.                          + .+-+..+|-++...
T Consensus       204 ~~rL~IfGAGhva~ala~~a-~~lg~~V~v~D~R~~~~--------------------------~-~~~fp~a~~~~~~~  255 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQG-AFLGYRVTVCDARPVFA--------------------------T-TARFPTADEVVVDW  255 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHH-HHTTCEEEEEESCTTTS--------------------------C-TTTCSSSSEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCchhhc--------------------------c-cccCCCceEEEeCC
Confidence            45899999999999999985 79999999999875310                          1 12245666555555


Q ss_pred             CCCccccccccHHHHhc------CCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEE
Q 022672          153 VLDKTTYHLINKERLAT------MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  203 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~------mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~  203 (294)
                      |          .+.+..      +.+++++|=+.++.-.|...|..+|+++.....+
T Consensus       256 p----------~~~~~~~~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG  302 (386)
T 2we8_A          256 P----------HRYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIG  302 (386)
T ss_dssp             H----------HHHHHHHHHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEE
T ss_pred             h----------HHHHHhhccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEE
Confidence            5          222222      6778888888999889999999999886334433

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.68  E-value=0.0044  Score=55.11  Aligned_cols=97  Identities=19%  Similarity=0.255  Sum_probs=58.2

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+|+|+| +|.||+.+++.+...-++++.+ +|+........   ..++ +.  +... ++....++++++.++|+|+-+
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~---d~ge-l~--g~~~-gv~v~~dl~~ll~~~DVVIDf   80 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQ---DAGA-FL--GKQT-GVALTDDIERVCAEADYLIDF   80 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTS---BTTT-TT--TCCC-SCBCBCCHHHHHHHCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccc---cHHH-Hh--CCCC-CceecCCHHHHhcCCCEEEEc
Confidence            5899999 8999999999875566888876 67754321000   0000 00  1111 334457999999999999988


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      .+  ++...   ......++.|.-+|-...|
T Consensus        81 T~--p~a~~---~~~~~al~~G~~vVigTTG  106 (272)
T 4f3y_A           81 TL--PEGTL---VHLDAALRHDVKLVIGTTG  106 (272)
T ss_dssp             SC--HHHHH---HHHHHHHHHTCEEEECCCC
T ss_pred             CC--HHHHH---HHHHHHHHcCCCEEEECCC
Confidence            76  33211   1122224455556655555

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.68  E-value=0.0034  Score=57.49  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=25.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhc--CCCEEEEEcC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  105 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~--~g~~V~~~d~  105 (294)
                      .+|||+|+|.||+.+.|.|...  -.++|.+.+.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~   34 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence            3799999999999999987544  4689886644

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.68  E-value=0.027  Score=50.86  Aligned_cols=136  Identities=13%  Similarity=0.148  Sum_probs=84.7

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC-ChHHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA   89 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA   89 (294)
                      +.++..+|+|-|.-+....++-  +++=++.+.++                     .| .+.|++|++||= +++.++.+
T Consensus       116 ~lA~~~~vPVINag~~~~HPtQ--aLaDl~Ti~e~---------------------~g-~l~glkva~vGD~~~va~Sl~  171 (309)
T 4f2g_A          116 RFAENSRVPVINGLTNEYHPCQ--VLADIFTYYEH---------------------RG-PIRGKTVAWVGDANNMLYTWI  171 (309)
T ss_dssp             HHHHTCSSCEEEEECSSCCHHH--HHHHHHHHHHH---------------------HS-CCTTCEEEEESCCCHHHHHHH
T ss_pred             HHHHhCCCCEEECCCCccCcHH--HHHHHHHHHHH---------------------hC-CCCCCEEEEECCCcchHHHHH
Confidence            3456678999998766554432  22222333221                     01 478999999997 56778888


Q ss_pred             HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc----CCCc--------c
Q 022672           90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP----VLDK--------T  157 (294)
Q Consensus        90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~----Plt~--------~  157 (294)
                      ..+ ..||++|....|..-...+.+       +..  .....+....+++|.++++|+|..-.    ....        -
T Consensus       172 ~~~-~~~G~~v~~~~P~~~~~~~~~-------~~~--~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~r~~~~  241 (309)
T 4f2g_A          172 QAA-RILDFKLQLSTPPGYALDAKL-------VDA--ESAPFYQVFDDPNEACKGADLVTTDVWTSMGFEAENEARKRAF  241 (309)
T ss_dssp             HHH-HHHTCEEEEECCGGGCCCGGG-------SCG--GGGGGEEECSSHHHHTTTCSEEEECCC------------CCSG
T ss_pred             HHH-HHcCCEEEEECCcccCCCHHH-------HHH--HcCCeEEEEcCHHHHhcCCCEEEecccccCcchhhHHHHHHHh
Confidence            776 578999999877432111110       000  00122344679999999999998743    1000        0


Q ss_pred             ccccccHHHHhcCCCCcEEEEcC
Q 022672          158 TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       158 t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ...-++.+.++.+|++++|..+.
T Consensus       242 ~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          242 ADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             GGGCBCHHHHTTSCTTCEEEECS
T ss_pred             cCceeCHHHHHhcCCCeEEECCC
Confidence            12457899999999999999885

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.66  E-value=0.0074  Score=55.14  Aligned_cols=69  Identities=17%  Similarity=0.296  Sum_probs=45.1

Q ss_pred             CEEEEEcCChHHH-HHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEE
Q 022672           74 QTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~-~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  149 (294)
                      .+|||||+|.||+ ..++.+.+.-++++. ++|++..   +.+.+.++       ..  +...+.++++++.+  .|+|+
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~---~~~a~~~~-------~~--~~~~~~~~~~ll~~~~~D~V~   70 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVN---EKAAAPFK-------EK--GVNFTADLNELLTDPEIELIT   70 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCC---HHHHHHHH-------TT--TCEEESCTHHHHSCTTCCEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHH---HHHHHhhC-------CC--CCeEECCHHHHhcCCCCCEEE
Confidence            3799999999998 566666333378876 5777621   12211110       01  12345799999976  89999


Q ss_pred             EccCC
Q 022672          150 LHPVL  154 (294)
Q Consensus       150 l~~Pl  154 (294)
                      +|+|.
T Consensus        71 i~tp~   75 (349)
T 3i23_A           71 ICTPA   75 (349)
T ss_dssp             ECSCG
T ss_pred             EeCCc
Confidence            99994

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.64  E-value=0.004  Score=53.09  Aligned_cols=77  Identities=12%  Similarity=0.129  Sum_probs=50.6

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCC-CCccccccCCHHHHhhcCC
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~~aD  146 (294)
                      ..+.||+|.|.|. |.||+.+++.| ...|.+|++.+++..... ....        .+. .........++.+.+.++|
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L-~~~G~~V~~~~R~~~~~~-~~~~--------~~~~~~~~~Dl~~~~~~~~~~~D   86 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSEL-KNKGHEPVAMVRNEEQGP-ELRE--------RGASDIVVANLEEDFSHAFASID   86 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSGGGHH-HHHH--------TTCSEEEECCTTSCCGGGGTTCS
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHH-HhCCCeEEEEECChHHHH-HHHh--------CCCceEEEcccHHHHHHHHcCCC
Confidence            4699999999998 99999999998 467999999998765432 1111        011 0000001156778889999


Q ss_pred             EEEEccCCC
Q 022672          147 VISLHPVLD  155 (294)
Q Consensus       147 iV~l~~Plt  155 (294)
                      +|+.+....
T Consensus        87 ~vi~~ag~~   95 (236)
T 3e8x_A           87 AVVFAAGSG   95 (236)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999888644

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.63  E-value=0.0034  Score=57.38  Aligned_cols=77  Identities=21%  Similarity=0.215  Sum_probs=45.7

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCC--c------cccccCCHHHHhhcC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQP--V------TWKRASSMDEVLREA  145 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~l~ell~~a  145 (294)
                      +|||+|+|.||+.+++.|...-++++.+ .|+.... ...+...++-  ...+..+  .      ......+.++++.++
T Consensus         4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~-~~~~~~~~g~--~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~v   80 (334)
T 2czc_A            4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF-EAYRAKELGI--PVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH-HHHHHHHTTC--CEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHH-HHHHHHhcCc--cccccccccceeccCCceEEcCcHHHhccCC
Confidence            7999999999999999874334678765 5654322 2222111100  0000000  0      011235788999999


Q ss_pred             CEEEEccCC
Q 022672          146 DVISLHPVL  154 (294)
Q Consensus       146 DiV~l~~Pl  154 (294)
                      |+|+.|.|.
T Consensus        81 DvV~~aTp~   89 (334)
T 2czc_A           81 DIIVDATPG   89 (334)
T ss_dssp             SEEEECCST
T ss_pred             CEEEECCCc
Confidence            999999984

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.62  E-value=0.0097  Score=52.85  Aligned_cols=40  Identities=25%  Similarity=0.244  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|+..+++...
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~   83 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFA-KEGANIAIAYLDEEG   83 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCchH
Confidence            4689999999987 889999999984 789999999887654

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.62  E-value=0.0014  Score=60.80  Aligned_cols=38  Identities=26%  Similarity=0.503  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .+.+++|+|+|.|.+|+.+++.+ +.+|++|+++|+.+.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa-~~lG~~viv~d~~~~   46 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSA-QKMGYKVVVLDPSED   46 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCC
Confidence            46899999999999999999996 799999999998754

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.61  E-value=0.0034  Score=57.83  Aligned_cols=97  Identities=12%  Similarity=0.173  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  150 (294)
                      .|++|.|+|.|.||..+++.+ +.+|++|++.+++..... ....       ..+.... .......+.++....|+|+-
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~~-~~~~-------~lGa~~v~~~~~~~~~~~~~~~~D~vid  257 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFA-KAFGSKVTVISTSPSKKE-EALK-------NFGADSFLVSRDQEQMQAAAGTLDGIID  257 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGGHH-HHHH-------TSCCSEEEETTCHHHHHHTTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HHHH-------hcCCceEEeccCHHHHHHhhCCCCEEEE
Confidence            688999999999999999985 789999999998764421 1110       1111111 00000123344457899999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      ++.....     -...++.|+++..+|+++..
T Consensus       258 ~~g~~~~-----~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          258 TVSAVHP-----LLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             CCSSCCC-----SHHHHHHEEEEEEEEECCCC
T ss_pred             CCCcHHH-----HHHHHHHHhcCCEEEEEccC
Confidence            9874321     25677888999999998653

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.59  E-value=0.012  Score=53.60  Aligned_cols=111  Identities=16%  Similarity=0.243  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ..++|+|||.|.+|.++|..|+ ..+. +|..+|...........+ ........+ .........+ .+.+++||+|++
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~-~~~~~~v~l~Di~~~~~~g~a~d-L~~~~~~~~-~~~~v~~t~d-~~a~~~aDvVIi   79 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLAL-IKQLGDVVLFDIAQGMPNGKALD-LLQTCPIEG-VDFKVRGTND-YKDLENSDVVIV   79 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHHHHHHHH-HHTTHHHHT-CCCCEEEESC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCceEEEEeCChHHHHHHHHH-HHhhhhhcC-CCcEEEEcCC-HHHHCCCCEEEE
Confidence            3578999999999999999874 3444 999999876542111111 100000000 1111222234 367899999999


Q ss_pred             ccCCCcccccc-----c--cH-------HHHhcCCCCcEEEEcCCCcccCHHH
Q 022672          151 HPVLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSRGPVIDEVA  189 (294)
Q Consensus       151 ~~Plt~~t~~l-----i--~~-------~~l~~mk~gailIN~aRG~~vd~~a  189 (294)
                      +.+. +...++     +  |.       +.+....|++++++++  ..+|.-.
T Consensus        80 ~ag~-p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t  129 (321)
T 3p7m_A           80 TAGV-PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIMV  129 (321)
T ss_dssp             CCSC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHH
T ss_pred             cCCc-CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHH
Confidence            9753 322222     1  11       1223335889999995  4555433

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.59  E-value=0.0052  Score=56.28  Aligned_cols=31  Identities=32%  Similarity=0.487  Sum_probs=25.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  104 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d  104 (294)
                      .+|||+|+|.||+.++|.|...-++++.+..
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~   34 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   34 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEec
Confidence            3799999999999999987555678987654

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.58  E-value=0.0044  Score=57.50  Aligned_cols=68  Identities=19%  Similarity=0.283  Sum_probs=48.0

Q ss_pred             CEEEEEcCC-hHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEE
Q 022672           74 QTVGVIGAG-RIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  149 (294)
Q Consensus        74 ktvGIIGlG-~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  149 (294)
                      .+|||||+| .+|+..++.|.+.-+++++ ++|++.... +.+...+       +     ...+.++++++++  .|+|+
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------g-----~~~~~~~~ell~~~~vD~V~   69 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVR-ERFGKEY-------G-----IPVFATLAEMMQHVQMDAVY   69 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHH-HHHHHHH-------T-----CCEESSHHHHHHHSCCSEEE
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHH-HHHHHHc-------C-----CCeECCHHHHHcCCCCCEEE
Confidence            479999999 9999999887444477876 578775432 2222211       1     2245799999975  89999


Q ss_pred             EccCC
Q 022672          150 LHPVL  154 (294)
Q Consensus       150 l~~Pl  154 (294)
                      +++|.
T Consensus        70 i~tp~   74 (387)
T 3moi_A           70 IASPH   74 (387)
T ss_dssp             ECSCG
T ss_pred             EcCCc
Confidence            99993

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.57  E-value=0.004  Score=57.21  Aligned_cols=67  Identities=10%  Similarity=0.130  Sum_probs=46.2

Q ss_pred             CEEEEEcCChHHHH-HHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 022672           74 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~-vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  149 (294)
                      .+|||||+|.||+. .++.+.+.-++++. ++|+......    ..+       +    +...+.++++++.  +.|+|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~----~~~-------~----~~~~~~~~~~ll~~~~vD~V~   70 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVK----RDF-------P----DAEVVHELEEITNDPAIELVI   70 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHH----HHC-------T----TSEEESSTHHHHTCTTCCEEE
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH----hhC-------C----CCceECCHHHHhcCCCCCEEE
Confidence            47999999999997 67766323378876 5687654311    111       0    1234578999997  789999


Q ss_pred             EccCCC
Q 022672          150 LHPVLD  155 (294)
Q Consensus       150 l~~Plt  155 (294)
                      +|+|..
T Consensus        71 i~tp~~   76 (358)
T 3gdo_A           71 VTTPSG   76 (358)
T ss_dssp             ECSCTT
T ss_pred             EcCCcH
Confidence            999943

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.56  E-value=0.0029  Score=58.16  Aligned_cols=66  Identities=15%  Similarity=0.159  Sum_probs=46.1

Q ss_pred             CEEEEEcCChHHHH-HHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEE
Q 022672           74 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~-vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  149 (294)
                      .+|||||+|.||+. .++.+.+.-++++. ++|++.....    +.+       +    +...+.++++++.+  .|+|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~----~~~-------~----~~~~~~~~~~ll~~~~vD~V~   70 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK----ERY-------P----QASIVRSFKELTEDPEIDLIV   70 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG----TTC-------T----TSEEESCSHHHHTCTTCCEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH----HhC-------C----CCceECCHHHHhcCCCCCEEE
Confidence            47999999999997 67766333478876 5787754311    000       0    22345799999976  89999


Q ss_pred             EccCC
Q 022672          150 LHPVL  154 (294)
Q Consensus       150 l~~Pl  154 (294)
                      +|+|.
T Consensus        71 i~tp~   75 (362)
T 3fhl_A           71 VNTPD   75 (362)
T ss_dssp             ECSCG
T ss_pred             EeCCh
Confidence            99994

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.56  E-value=0.038  Score=50.92  Aligned_cols=143  Identities=17%  Similarity=0.154  Sum_probs=88.2

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY   88 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~v   88 (294)
                      +.++-.+|+|-|.-+....++-  +|+=++.+.++.                     | .+.|.+|++||=|  ++.+++
T Consensus       138 ~lA~~s~vPVINa~~~~~HPtQ--aLaDl~Ti~E~~---------------------g-~l~gl~va~vGD~~~rva~Sl  193 (359)
T 2w37_A          138 ILARDSGVPVWNGLTDEWHPTQ--MLADFMTVKENF---------------------G-KLQGLTLTFMGDGRNNVANSL  193 (359)
T ss_dssp             HHHHHSSSCEEEEECSSCCHHH--HHHHHHHHHHHH---------------------S-CCTTCEEEEESCTTSHHHHHH
T ss_pred             HHHHhCCCCEEcCCCCCCCccH--HHHHHHHHHHHh---------------------C-CcCCeEEEEECCCccchHHHH
Confidence            3455667999997765444432  233333333210                     1 4889999999996  999999


Q ss_pred             HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC-C-Cc----c-----
Q 022672           89 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV-L-DK----T-----  157 (294)
Q Consensus        89 A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P-l-t~----~-----  157 (294)
                      +..+ ..+|++|....|..-...+.+.+...+.....+   ..+....+++|.++++|+|..-.= . ..    +     
T Consensus       194 ~~~~-~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDvvytd~w~smg~ee~~er~~~~  269 (359)
T 2w37_A          194 LVTG-AILGVNIHIVAPKALFPTEETQNIAKGFAEKSG---AKLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERVKEL  269 (359)
T ss_dssp             HHHH-HHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEEEECCSCCTTCTTHHHHHHHH
T ss_pred             HHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhcCCCEEEEcccccccccchHHHHHHh
Confidence            9986 578999999887542211111110000011112   123345799999999999977332 0 00    0     


Q ss_pred             ccccccHHHHhcCC---CCcEEEEcCC
Q 022672          158 TYHLINKERLATMK---KEAILVNCSR  181 (294)
Q Consensus       158 t~~li~~~~l~~mk---~gailIN~aR  181 (294)
                      ...-++.+.++.+|   |+++|..+.-
T Consensus       270 ~~y~v~~ell~~ak~~~~dai~MHcLP  296 (359)
T 2w37_A          270 TPYQVNMEAMKKTGTPDDQLIFMHCLP  296 (359)
T ss_dssp             GGGCBCHHHHHTTCCCGGGCEEEECSC
T ss_pred             hccccCHHHHHhhCCCCCCEEEECCCC
Confidence            13457889999999   9999999843

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.55  E-value=0.006  Score=56.07  Aligned_cols=77  Identities=23%  Similarity=0.290  Sum_probs=49.4

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      +.+++|+|||. |.+|+.+|..++ ..|  -+|..+|...........+     +....-.........++.+.+++||+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~-~~g~~~evvLiDi~~~k~~g~a~D-----L~~~~~~~~~i~~t~d~~~al~dADv   79 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAA-MMRLTPNLCLYDPFAVGLEGVAEE-----IRHCGFEGLNLTFTSDIKEALTDAKY   79 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHH-HTTCCSCEEEECSCHHHHHHHHHH-----HHHHCCTTCCCEEESCHHHHHTTEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHH-hcCCCCEEEEEeCCchhHHHHHHh-----hhhCcCCCCceEEcCCHHHHhCCCCE
Confidence            45789999998 999999997763 455  4899999865432211111     11101011122234678888999999


Q ss_pred             EEEccC
Q 022672          148 ISLHPV  153 (294)
Q Consensus       148 V~l~~P  153 (294)
                      |+++..
T Consensus        80 VvitaG   85 (343)
T 3fi9_A           80 IVSSGG   85 (343)
T ss_dssp             EEECCC
T ss_pred             EEEccC
Confidence            999864

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.53  E-value=0.0054  Score=56.29  Aligned_cols=68  Identities=21%  Similarity=0.277  Sum_probs=44.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhc--------CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-
Q 022672           74 QTVGVIGAGRIGSAYARMMVEG--------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-  143 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~--------~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-  143 (294)
                      -+|||||+|.||+.-++.+ +.        -+++++ ++|++.... +.+.+.++       .    ...+.+++++++ 
T Consensus        26 irvgiIG~G~ig~~H~~a~-~~~~~~~~~~~~~~lvav~d~~~~~a-~~~a~~~g-------~----~~~y~d~~ell~~   92 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAW-NAVKTVFGDVERPRLVHLAEANAGLA-EARAGEFG-------F----EKATADWRALIAD   92 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTHHHHHCSSCCCEEEEEECC--TTH-HHHHHHHT-------C----SEEESCHHHHHHC
T ss_pred             ccEEEEcCCHHHHHHHHHH-HhhhhhhccCCCcEEEEEECCCHHHH-HHHHHHhC-------C----CeecCCHHHHhcC
Confidence            4799999999999777654 22        256766 468776432 33333221       1    124579999996 


Q ss_pred             -cCCEEEEccCC
Q 022672          144 -EADVISLHPVL  154 (294)
Q Consensus       144 -~aDiV~l~~Pl  154 (294)
                       +.|+|++|+|.
T Consensus        93 ~~iDaV~IatP~  104 (393)
T 4fb5_A           93 PEVDVVSVTTPN  104 (393)
T ss_dssp             TTCCEEEECSCG
T ss_pred             CCCcEEEECCCh
Confidence             47899999993

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.53  E-value=0.0036  Score=59.70  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=36.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhH
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR  110 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~  110 (294)
                      -.++|++|.|||.|.+|.+.++.| ...|++|+++|+.....
T Consensus         8 ~~l~~~~vlVvGgG~va~~k~~~L-~~~ga~V~vi~~~~~~~   48 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQ   48 (457)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHH
T ss_pred             EECCCCEEEEECCCHHHHHHHHHH-HhCcCEEEEEcCCCCHH
Confidence            468999999999999999999998 68999999999875543

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.49  E-value=0.037  Score=52.36  Aligned_cols=118  Identities=15%  Similarity=0.239  Sum_probs=71.3

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCC---------chhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASS  137 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (294)
                      |.++.|+||.|.|+|++|+.+|+.| ...|++|++ .|.+         ......+..+..+.      ..........+
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L-~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~------i~~y~~a~~i~  302 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAF-HDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGG------VRGYPKAEPLP  302 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSS------STTCTTSEECC
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHH-HHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCC------cccCCCceEcC
Confidence            4578999999999999999999997 588999984 4542         11111111111110      00000001124


Q ss_pred             HHHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          138 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       138 l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      .++++ ..||+++-|..     .+.++.+....++ -.+++-.+-+.+- .+ -.+.|.+..|.
T Consensus       303 ~~ei~~~~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~e-A~~iL~~~GI~  358 (440)
T 3aog_A          303 AADFWGLPVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PA-ADDILLEKGVL  358 (440)
T ss_dssp             HHHHTTCCCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HH-HHHHHHHHTCE
T ss_pred             chhhhcCCCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HH-HHHHHHHCCCE
Confidence            55665 47999998865     4556666666664 5678888888864 33 33555555543

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.48  E-value=0.012  Score=55.90  Aligned_cols=103  Identities=17%  Similarity=0.219  Sum_probs=69.7

Q ss_pred             CcccCCCEEEEEcCC----------hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 022672           68 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  137 (294)
Q Consensus        68 g~~l~gktvGIIGlG----------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (294)
                      +..+.|++|+|+|+-          .-...+++.| ...|++|.+|||........   .+         .  +.....+
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~---------~--~~~~~~~  381 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAAL-QDAGATVKAYDPEGVEQASK---ML---------T--DVEFVEN  381 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHH-HHTSCEEEEECSSCHHHHGG---GC---------S--SCCBCSC
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCCHhHHH---hc---------C--CceEecC
Confidence            456899999999997          5578899998 68999999999987432110   00         0  1234468


Q ss_pred             HHHHhhcCCEEEEccCCCccccccccHHH-HhcCCCCcEEEEcCCCcccCHHHH
Q 022672          138 MDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCSRGPVIDEVAL  190 (294)
Q Consensus       138 l~ell~~aDiV~l~~Plt~~t~~li~~~~-l~~mk~gailIN~aRG~~vd~~aL  190 (294)
                      +++.++++|.|++++.- ++-+. ++-+. .+.|+ +.+++++ |+ +.|.+.+
T Consensus       382 ~~~~~~~ad~vvi~t~~-~~f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          382 PYAAADGADALVIVTEW-DAFRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             HHHHHTTBSEEEECSCC-TTTTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred             hhHHhcCCCEEEEeeCC-HHhhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence            89999999999999862 33332 44444 45565 4678885 54 4555544

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=96.47  E-value=0.095  Score=47.25  Aligned_cols=150  Identities=15%  Similarity=0.100  Sum_probs=89.3

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccC-CCEEEEEcC-ChHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLK-GQTVGVIGA-GRIGSAY   88 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~-gktvGIIGl-G~IG~~v   88 (294)
                      +.++-.+|+|-|.-.-...++  .+++=++.+.++.                     | .+. |++|++||= +++.++.
T Consensus       107 ~lA~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~---------------------g-~l~~gl~va~vGD~~~va~Sl  162 (307)
T 3tpf_A          107 EFARYSKAPVINALSELYHPT--QVLGDLFTIKEWN---------------------K-MQNGIAKVAFIGDSNNMCNSW  162 (307)
T ss_dssp             HHHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHTT---------------------C-CGGGCCEEEEESCSSHHHHHH
T ss_pred             HHHHhCCCCEEeCCCCCcCcH--HHHHHHHHHHHHh---------------------C-CCCCCCEEEEEcCCCccHHHH
Confidence            345667889998766444443  2233233333211                     2 477 999999997 5678888


Q ss_pred             HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc--CCCc--c-------
Q 022672           89 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP--VLDK--T-------  157 (294)
Q Consensus        89 A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~--Plt~--~-------  157 (294)
                      +..+ ..||++|....|..-...+.+.+.........+   ..+....+++|.++++|+|..-.  ....  +       
T Consensus       163 ~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~~~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~~~~~  238 (307)
T 3tpf_A          163 LITA-AILGFEISIAMPKNYKISPEIWEFAMKQALISG---AKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKE  238 (307)
T ss_dssp             HHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CEEEEESCHHHHHTTCSEEEECCSSCTTGGGGHHHHHHH
T ss_pred             HHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhcCCCEEEecCcccCCchhhHHHHHHH
Confidence            8776 578999998877532111111110000000111   12334579999999999997755  0111  1       


Q ss_pred             -ccccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022672          158 -TYHLINKERLATMKKEAILVNCS---RGPVIDEV  188 (294)
Q Consensus       158 -t~~li~~~~l~~mk~gailIN~a---RG~~vd~~  188 (294)
                       ...-++.+.++.+|++++|..+.   ||.=|+.+
T Consensus       239 ~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~e  273 (307)
T 3tpf_A          239 FEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEE  273 (307)
T ss_dssp             TGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             hcccccCHHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence             12447899999999999999985   56544443

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.47  E-value=0.0082  Score=53.77  Aligned_cols=105  Identities=17%  Similarity=0.128  Sum_probs=65.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  148 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  148 (294)
                      .++|.|+|+ |++|+.+++.+ +..|++++ ..+|.....                 ...+...+.+++|+..  ..|++
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l-~~~g~~~v~~VnP~~~g~-----------------~i~G~~vy~sl~el~~~~~~Dv~   68 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQM-LTYGTKIVAGVTPGKGGM-----------------EVLGVPVYDTVKEAVAHHEVDAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHSCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHH-HHcCCeEEEEECCCCCCc-----------------eECCEEeeCCHHHHhhcCCCCEE
Confidence            468999999 99999999987 45688854 566653110                 0122344578999998  89999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDEVALVEHLKQNPM  199 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~-~vd~~aL~~aL~~g~i  199 (294)
                      ++++|. +.+...+ ++..+. .-. .+|..+.|= ..+++.|.++.++..+
T Consensus        69 Ii~vp~-~~~~~~~-~ea~~~-Gi~-~vVi~t~G~~~~~~~~l~~~a~~~gi  116 (288)
T 1oi7_A           69 IIFVPA-PAAADAA-LEAAHA-GIP-LIVLITEGIPTLDMVRAVEEIKALGS  116 (288)
T ss_dssp             EECCCH-HHHHHHH-HHHHHT-TCS-EEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred             EEecCH-HHHHHHH-HHHHHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            999992 3333333 333331 222 244455552 2345578887776555

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.46  E-value=0.0026  Score=54.54  Aligned_cols=67  Identities=15%  Similarity=0.152  Sum_probs=45.1

Q ss_pred             CCEEEEEcCChHHHHHHHHH-hhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEEE
Q 022672           73 GQTVGVIGAGRIGSAYARMM-VEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVIS  149 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L-~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV~  149 (294)
                      .++++|||+|.+|+.+++.+ ... |+++++ +|..+.....             ......+....+++++++ +.|.|+
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~-------------~i~gv~V~~~~dl~ell~~~ID~Vi  145 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGR-------------PVRGGVIEHVDLLPQRVPGRIEIAL  145 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTC-------------EETTEEEEEGGGHHHHSTTTCCEEE
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhh-------------hhcCCeeecHHhHHHHHHcCCCEEE
Confidence            35799999999999999852 134 888765 5765543100             001122333568999886 589999


Q ss_pred             EccC
Q 022672          150 LHPV  153 (294)
Q Consensus       150 l~~P  153 (294)
                      +|+|
T Consensus       146 IA~P  149 (211)
T 2dt5_A          146 LTVP  149 (211)
T ss_dssp             ECSC
T ss_pred             EeCC
Confidence            9999

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.45  E-value=0.0069  Score=53.80  Aligned_cols=39  Identities=18%  Similarity=0.297  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           69 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        69 ~~l~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      ..+.||++.|+| .|.||+++++.| ...|++|+.++++..
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L-~~~G~~V~i~~R~~~  154 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLD  154 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEECCHH
Confidence            457899999999 999999999998 478999999998754

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.45  E-value=0.0046  Score=56.25  Aligned_cols=61  Identities=13%  Similarity=0.186  Sum_probs=45.0

Q ss_pred             CCEEEEEcCChHHH-HHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCE
Q 022672           73 GQTVGVIGAGRIGS-AYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADV  147 (294)
Q Consensus        73 gktvGIIGlG~IG~-~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDi  147 (294)
                      -.+|||||+|.||+ ..++.+.+.-++++++ +|+....                    .+...+.++++++++   .|+
T Consensus        25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~--------------------~g~~~~~~~~~ll~~~~~vD~   84 (330)
T 4ew6_A           25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV--------------------EGVNSYTTIEAMLDAEPSIDA   84 (330)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC--------------------TTSEEESSHHHHHHHCTTCCE
T ss_pred             CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh--------------------cCCCccCCHHHHHhCCCCCCE
Confidence            35899999999998 6788774334788764 6765421                    112345799999976   899


Q ss_pred             EEEccC
Q 022672          148 ISLHPV  153 (294)
Q Consensus       148 V~l~~P  153 (294)
                      |++++|
T Consensus        85 V~i~tp   90 (330)
T 4ew6_A           85 VSLCMP   90 (330)
T ss_dssp             EEECSC
T ss_pred             EEEeCC
Confidence            999999

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=96.45  E-value=0.018  Score=54.06  Aligned_cols=72  Identities=15%  Similarity=0.170  Sum_probs=47.2

Q ss_pred             CEEEEEcCCh---HHHHHHHHHhhcCCCEEE--EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc----
Q 022672           74 QTVGVIGAGR---IGSAYARMMVEGFKMNLI--YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----  144 (294)
Q Consensus        74 ktvGIIGlG~---IG~~vA~~L~~~~g~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~----  144 (294)
                      .+|||||+|.   ||+..+..+...-+++++  ++|+++... +.+.+.+       +...  ...+.+++++++.    
T Consensus        38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a-~~~a~~~-------g~~~--~~~~~~~~~ll~~~~~~  107 (417)
T 3v5n_A           38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKA-EASGREL-------GLDP--SRVYSDFKEMAIREAKL  107 (417)
T ss_dssp             EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHH-HHHHHHH-------TCCG--GGBCSCHHHHHHHHHHC
T ss_pred             ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHH-HHHHHHc-------CCCc--ccccCCHHHHHhccccc
Confidence            4799999999   999988876333357776  468876542 2222222       1110  1245799999976    


Q ss_pred             ---CCEEEEccCCC
Q 022672          145 ---ADVISLHPVLD  155 (294)
Q Consensus       145 ---aDiV~l~~Plt  155 (294)
                         .|+|++++|..
T Consensus       108 ~~~vD~V~I~tp~~  121 (417)
T 3v5n_A          108 KNGIEAVAIVTPNH  121 (417)
T ss_dssp             TTCCSEEEECSCTT
T ss_pred             CCCCcEEEECCCcH
Confidence               89999999943

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.44  E-value=0.0052  Score=57.39  Aligned_cols=69  Identities=25%  Similarity=0.320  Sum_probs=46.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhc--------CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-
Q 022672           74 QTVGVIGAGRIGSAYARMMVEG--------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-  143 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~--------~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-  143 (294)
                      .+|||||+|.||+.-++.+++.        -+++|+ ++|+++.. .+.+.+.+       +.    ...+.+++++++ 
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~-a~~~a~~~-------~~----~~~y~d~~~ll~~   94 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAM-AERHAAKL-------GA----EKAYGDWRELVND   94 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHH-HHHHHHHH-------TC----SEEESSHHHHHHC
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHH-HHHHHHHc-------CC----CeEECCHHHHhcC
Confidence            3799999999999888776321        156766 46877643 23333322       11    124578999996 


Q ss_pred             -cCCEEEEccCC
Q 022672          144 -EADVISLHPVL  154 (294)
Q Consensus       144 -~aDiV~l~~Pl  154 (294)
                       +.|+|++|+|.
T Consensus        95 ~~vD~V~I~tp~  106 (412)
T 4gqa_A           95 PQVDVVDITSPN  106 (412)
T ss_dssp             TTCCEEEECSCG
T ss_pred             CCCCEEEECCCc
Confidence             57999999993

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=96.44  E-value=0.0025  Score=58.41  Aligned_cols=78  Identities=19%  Similarity=0.229  Sum_probs=44.0

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCCchhHHHHHHhh----hhhh---hhhcCCCCccccccCCHHHHhhcCC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTA----YGQF---LKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +|||+|+|.||+.+++.|...-++++.+. |+............    ++.+   .........  ....+.++++.++|
T Consensus         3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l--~v~~~~~~~~~~vD   80 (337)
T 1cf2_P            3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGI--EVAGTVDDMLDEAD   80 (337)
T ss_dssp             EEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTC--CCCEEHHHHHHTCS
T ss_pred             EEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCce--EEcCCHHHHhcCCC
Confidence            79999999999999998754467887654 54422111110000    0000   000000000  11125778888999


Q ss_pred             EEEEccCC
Q 022672          147 VISLHPVL  154 (294)
Q Consensus       147 iV~l~~Pl  154 (294)
                      +|+.|+|.
T Consensus        81 vV~~atp~   88 (337)
T 1cf2_P           81 IVIDCTPE   88 (337)
T ss_dssp             EEEECCST
T ss_pred             EEEECCCc
Confidence            99999984

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.42  E-value=0.0033  Score=55.10  Aligned_cols=101  Identities=19%  Similarity=0.209  Sum_probs=63.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCch------------------hHHHHHHhhhhhhhhhcCCCC
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  129 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  129 (294)
                      ..|.+++|.|||+|.+|..+++.|+ ..|+ ++..+|...-                  ...+...+    .+.... ..
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La-~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~----~l~~~n-p~   97 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLA-GAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQ----RLTQLN-PD   97 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHH-HTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHH----HHHHHC-TT
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHH-HcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHH----HHHHHC-CC
Confidence            3689999999999999999999985 6776 7788876421                  01111111    111111 11


Q ss_pred             ccccc------cCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          130 VTWKR------ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       130 ~~~~~------~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      ..+..      ..+++++++++|+|+.+.. +.+++..+++...+.   +.-+|..
T Consensus        98 ~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~  149 (251)
T 1zud_1           98 IQLTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITA  149 (251)
T ss_dssp             SEEEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEE
T ss_pred             CEEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEE
Confidence            11111      1246678899999999987 677888887776653   3335554

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.42  E-value=0.0056  Score=60.08  Aligned_cols=102  Identities=17%  Similarity=0.238  Sum_probs=64.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCch------------------hHHHHHHhhhhhhhhhcCCCC
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  129 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  129 (294)
                      ..|.+++|.|||+|.+|..+|+.|+ ..|+ ++..+|...-                  ...+...+    .+.... ..
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La-~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~----~L~~iN-P~  396 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA----SLKRIF-PL  396 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-TTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHH----HHHHHC-TT
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHH----HHHhHC-CC
Confidence            4699999999999999999999985 6777 6888875410                  01111111    111111 11


Q ss_pred             cccc---------------------ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          130 VTWK---------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       130 ~~~~---------------------~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +.+.                     ....++++++++|+|+.|+. +.+++.+++......   +..+|+.+
T Consensus       397 v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD-n~~tR~lin~~c~~~---~~plI~aa  464 (598)
T 3vh1_A          397 MDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  464 (598)
T ss_dssp             CEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS-BGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred             cEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHhc---CCCEEEEE
Confidence            1111                     01235678999999999987 677888887765543   33566654

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.41  E-value=0.0095  Score=53.86  Aligned_cols=102  Identities=22%  Similarity=0.214  Sum_probs=58.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.+|.+++..|+. +..-++..+|...... +.......... ... .+..... .+ .+.+++||+|+++.
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~-~g~a~dl~~~~-~~~-~~~~v~~-~~-~~a~~~aD~Vii~a   75 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLA-QAHAEDILHAT-PFA-HPVWVWA-GS-YGDLEGARAVVLAA   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHH-HHHHHHHHTTG-GGS-CCCEEEE-CC-GGGGTTEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHH-HHHHHHHHHhH-hhc-CCeEEEE-CC-HHHhCCCCEEEECC
Confidence            479999999999999988743 2335899999875432 22111111110 001 1222222 33 56689999999998


Q ss_pred             CCCcccccc-------ccH-------HHHhcCCCCcEEEEcCC
Q 022672          153 VLDKTTYHL-------INK-------ERLATMKKEAILVNCSR  181 (294)
Q Consensus       153 Plt~~t~~l-------i~~-------~~l~~mk~gailIN~aR  181 (294)
                      +. +...++       .|.       +.+....|++++++++-
T Consensus        76 g~-~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (310)
T 2xxj_A           76 GV-AQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN  117 (310)
T ss_dssp             CC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CC-CCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            74 332222       011       12222378999999843

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=96.40  E-value=0.0053  Score=56.24  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=25.1

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  105 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~  105 (294)
                      +|||+|+|.||+.+.|.|...-.++|.+.+.
T Consensus         3 kVgI~G~G~iGr~l~R~l~~~~~veivain~   33 (334)
T 3cmc_O            3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (334)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhCCCCeEEEEEeC
Confidence            7999999999999999874334788876654

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=96.39  E-value=0.011  Score=53.56  Aligned_cols=103  Identities=16%  Similarity=0.231  Sum_probs=69.3

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           70 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        70 ~l~gktvGIIGlG---~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      .+.|++|++||=|   ++.++++..+ ..||++|....|..-...+.+.+    .+...+   ..+....+++|.++++|
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~eav~~aD  223 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVE----ELREKG---MKVVETTTLEDVIGKLD  223 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHH----HHHHTT---CCEEEESCTHHHHTTCS
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHH-HHCCCEEEEECCccccCCHHHHH----HHHHcC---CeEEEEcCHHHHhcCCC
Confidence            4889999999984   8999999986 58999999988754221111111    111112   12334578999999999


Q ss_pred             EEEEccCCC------cc-----ccccccHHHHhcCCCCcEEEEcC
Q 022672          147 VISLHPVLD------KT-----TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       147 iV~l~~Plt------~~-----t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +|..-.=-.      ++     ...-++.+.++.+||+++|..+.
T Consensus       224 vvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          224 VLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             EEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             EEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence            997754211      11     02446788888889999988874

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.35  E-value=0.0068  Score=50.38  Aligned_cols=94  Identities=16%  Similarity=0.164  Sum_probs=57.5

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHH---h--hc
Q 022672           72 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEV---L--RE  144 (294)
Q Consensus        72 ~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~el---l--~~  144 (294)
                      .|++|.|+| .|.||+.+++.+ +..|++|++.+++.... +.. .       ..+..........+. +++   .  ..
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~-~~~-~-------~~g~~~~~d~~~~~~~~~~~~~~~~~~  107 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAKR-EML-S-------RLGVEYVGDSRSVDFADEILELTDGYG  107 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHHH-HHH-H-------TTCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCEEEEeeCCChHHHHHHHHH-HHcCCEEEEEeCCHHHH-HHH-H-------HcCCCEEeeCCcHHHHHHHHHHhCCCC
Confidence            578999999 699999999986 67899999999865432 111 1       111110000001122 222   2  14


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|+|+.+..  .+    .-...+..|+++..+|+++.
T Consensus       108 ~D~vi~~~g--~~----~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          108 VDVVLNSLA--GE----AIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             EEEEEECCC--TH----HHHHHHHTEEEEEEEEECSC
T ss_pred             CeEEEECCc--hH----HHHHHHHHhccCCEEEEEcC
Confidence            788887764  22    12567788888888888864

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.35  E-value=0.0047  Score=56.27  Aligned_cols=95  Identities=15%  Similarity=0.084  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh------c
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  144 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------~  144 (294)
                      .|++|.|+|.|.||..+++.+ +.+|+ +|++.+++.... +. ...+       +....-.....++.+.+.      .
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~-~~-~~~~-------Ga~~~~~~~~~~~~~~v~~~~~g~g  236 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVA-KASGAYPVIVSEPSDFRR-EL-AKKV-------GADYVINPFEEDVVKEVMDITDGNG  236 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHHH-HH-HHHH-------TCSEEECTTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HH-HHHh-------CCCEEECCCCcCHHHHHHHHcCCCC
Confidence            788999999999999999985 78999 999999875432 11 1111       111010001123333222      5


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|+|+-++.. +++    -...++.|+++..+|.++.
T Consensus       237 ~D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          237 VDVFLEFSGA-PKA----LEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EEEEEECSCC-HHH----HHHHHHHEEEEEEEEECCC
T ss_pred             CCEEEECCCC-HHH----HHHHHHHHhcCCEEEEEcc
Confidence            7999888863 121    1556677888888888753

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=96.34  E-value=0.13  Score=47.03  Aligned_cols=144  Identities=14%  Similarity=0.118  Sum_probs=84.5

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC-ChHHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA   89 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA   89 (294)
                      +.++..+|+|-|.-+....++  .+++=++.+.++.+                   .|..+.|++|++||= +++.++++
T Consensus       134 ~lA~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~~-------------------~G~~l~glkva~vGD~~rva~Sl~  192 (339)
T 4a8t_A          134 DLANCATIPVINGMSDYNHPT--QELGDLCTMVEHLP-------------------EGKKLEDCKVVFVGDATQVCFSLG  192 (339)
T ss_dssp             HHHHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTCC-------------------TTCCGGGCEEEEESSCCHHHHHHH
T ss_pred             HHHHhCCCCEEECCCCCcCcH--HHHHHHHHHHHHhh-------------------cCCCCCCCEEEEECCCchhHHHHH
Confidence            445667899999876544443  22333333332210                   022588999999997 67888888


Q ss_pred             HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc--CC--Cccc-------
Q 022672           90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP--VL--DKTT-------  158 (294)
Q Consensus        90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~--Pl--t~~t-------  158 (294)
                      ..+ ..||++|....|..-...+.+.+...+.....+   ..+....+++ .++++|+|..-+  ..  ..+.       
T Consensus       193 ~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~v~~~~d~~-av~~aDvvytd~w~smg~~~~~~~er~~~  267 (339)
T 4a8t_A          193 LIT-TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSG---GSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKV  267 (339)
T ss_dssp             HHH-HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHC---CEEEEECCGG-GGTTCSEEEECCSSCCTTSCCCHHHHHHH
T ss_pred             HHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CEEEEECChh-HHcCCCEEEecCcccCCchhhhhHHHHHH
Confidence            876 579999999887532111111110000001111   1233457888 999999998632  11  1111       


Q ss_pred             ---cccccHHHHhcCCCCcEEEEcC
Q 022672          159 ---YHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       159 ---~~li~~~~l~~mk~gailIN~a  180 (294)
                         ..-++.+.++.+|++++|..+.
T Consensus       268 ~~~~y~vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          268 FYPKYQVNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             HTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             hccccccCHHHHHhcCCCcEEECCC
Confidence               1446788888888999888875

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.34  E-value=0.084  Score=49.61  Aligned_cols=118  Identities=19%  Similarity=0.230  Sum_probs=71.9

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhc-CCCEEEE-EcCC---------chhHHHHHHhhhhhhhhhcCCCCccccccC
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEG-FKMNLIY-YDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRAS  136 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~-~g~~V~~-~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (294)
                      |.++.|++|.|.|+|++|+.+|+.| .. .|++|++ .|.+         ......++.+..+      ...........
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L-~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g------~l~~y~~a~~~  276 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLI-SQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHG------TVVTYPKGERI  276 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSS------CSTTCSSSEEE
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHH-HHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhC------CcccCCCceEc
Confidence            4579999999999999999999987 56 8999884 4542         1111111111110      00000000112


Q ss_pred             CHHHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          137 SMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       137 ~l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +.++++ ..||+++-|..     .+.++.+....++ -.+++-.+-+.+- .++ .+.|.+..+.
T Consensus       277 ~~~eil~~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~  333 (415)
T 2tmg_A          277 TNEELLELDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PEA-DEILSRRGIL  333 (415)
T ss_dssp             CHHHHTTCSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             CchhhhcCCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HHH-HHHHHHCCCE
Confidence            455665 48999998875     4557777777774 4578888888864 333 3455555543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.34  E-value=0.023  Score=52.24  Aligned_cols=95  Identities=20%  Similarity=0.153  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccc-cCCHHHHhh-----
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR-----  143 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~ell~-----  143 (294)
                      .|++|.|+|.|.+|...++. ++.+|+ +|++.+++.... +. ..       ..+.... .... ..++.+.+.     
T Consensus       192 ~g~~VlV~GaG~vG~~a~ql-a~~~Ga~~Vi~~~~~~~~~-~~-~~-------~lGa~~vi~~~~~~~~~~~~~~~~~~~  261 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMG-CHSAGAKRIIAVDLNPDKF-EK-AK-------VFGATDFVNPNDHSEPISQVLSKMTNG  261 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEECSCGGGH-HH-HH-------HTTCCEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEEcCCHHHH-HH-HH-------HhCCceEEeccccchhHHHHHHHHhCC
Confidence            57899999999999999997 478999 899998776542 11 11       1121111 1110 123444433     


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCC-cEEEEcCC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  181 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~g-ailIN~aR  181 (294)
                      ..|+|+-++.. +++    -...++.++++ ..+|.++-
T Consensus       262 g~D~vid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          262 GVDFSLECVGN-VGV----MRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCC-HHH----HHHHHHHhhcCCcEEEEEcC
Confidence            48999988863 222    25677889998 88888864

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.34  E-value=0.01  Score=54.09  Aligned_cols=69  Identities=16%  Similarity=0.210  Sum_probs=47.5

Q ss_pred             CEEEEEcCC-hHHHHHHHHHhhc-CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 022672           74 QTVGVIGAG-RIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  148 (294)
Q Consensus        74 ktvGIIGlG-~IG~~vA~~L~~~-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  148 (294)
                      .+|||||+| .+|+..++.+.+. -++++. ++|+++... +.+.+.+       +.    ...+.+++++++  +.|+|
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~a~~~-------~~----~~~~~~~~~ll~~~~vD~V   86 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHA-EEFAKMV-------GN----PAVFDSYEELLESGLVDAV   86 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHH-HHHHHHH-------SS----CEEESCHHHHHHSSCCSEE
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHH-HHHHHHh-------CC----CcccCCHHHHhcCCCCCEE
Confidence            479999999 8999999887432 367774 678876432 2322222       11    124578999996  58999


Q ss_pred             EEccCC
Q 022672          149 SLHPVL  154 (294)
Q Consensus       149 ~l~~Pl  154 (294)
                      ++++|.
T Consensus        87 ~i~tp~   92 (340)
T 1zh8_A           87 DLTLPV   92 (340)
T ss_dssp             EECCCG
T ss_pred             EEeCCc
Confidence            999993

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=96.33  E-value=0.014  Score=53.74  Aligned_cols=31  Identities=29%  Similarity=0.480  Sum_probs=25.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  104 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d  104 (294)
                      .+|||+|+|.||+.+.|.|...-+++|.+.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            3899999999999999987433478887765

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.33  E-value=0.021  Score=52.52  Aligned_cols=95  Identities=18%  Similarity=0.141  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccc-cCCHHHHhh-----
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR-----  143 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~ell~-----  143 (294)
                      .|++|.|+|.|.||...++. ++.+|+ +|++.+++.... +. ..       ..+.... .... ..++.+.+.     
T Consensus       191 ~g~~VlV~GaG~vG~~a~ql-a~~~Ga~~Vi~~~~~~~~~-~~-~~-------~lGa~~vi~~~~~~~~~~~~~~~~~~~  260 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMG-CKAAGAARIIGVDINKDKF-AK-AK-------EVGATECVNPQDYKKPIQEVLTEMSNG  260 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEECSCGGGH-HH-HH-------HTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHHH-HH-HH-------HhCCceEecccccchhHHHHHHHHhCC
Confidence            57899999999999999997 478999 899998776542 11 11       1121111 1110 123444332     


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCC-cEEEEcCC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  181 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~g-ailIN~aR  181 (294)
                      ..|+|+-++.. +++    -...++.++++ ..+|.++-
T Consensus       261 g~D~vid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          261 GVDFSFEVIGR-LDT----MVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHHBCTTTCEEEECSC
T ss_pred             CCcEEEECCCC-HHH----HHHHHHHhhcCCcEEEEecc
Confidence            47999988863 222    15667888988 88888753

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.32  E-value=0.019  Score=51.91  Aligned_cols=103  Identities=17%  Similarity=0.329  Sum_probs=68.8

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           70 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        70 ~l~gktvGIIGl---G~IG~~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      .+.|++|++||=   |++.++++..+ ..+ |++|....|..-...+...+    .+...+   ..+....+++|.++++
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~eav~~a  222 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILD----MLDEKG---IAWSLHSSIEEVMAEV  222 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHH----HHHHTT---CCEEECSCGGGTTTTC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCcccccCHHHHH----HHHHcC---CeEEEEcCHHHHhcCC
Confidence            488999999998   59999999987 578 99999988754221111111    111112   1233457899999999


Q ss_pred             CEEEEccCCCc----cc------cccccHHHHhcCCCCcEEEEcC
Q 022672          146 DVISLHPVLDK----TT------YHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       146 DiV~l~~Plt~----~t------~~li~~~~l~~mk~gailIN~a  180 (294)
                      |+|..-.=-.+    +.      ..-++.+.++.+||+++|..+.
T Consensus       223 Dvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  267 (310)
T 3csu_A          223 DILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             SEEEECC-----------------CCBCGGGGTTCCTTCEEECCS
T ss_pred             CEEEECCccccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence            99976543111    11      2446888888899999999874

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.32  E-value=0.02  Score=52.35  Aligned_cols=107  Identities=12%  Similarity=0.141  Sum_probs=61.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      ....++|+|||.|.||..+|..|+ ..|.  ++..+|...........+ .... .... .........+.+ .+++||+
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~-~~~~~~el~L~Di~~~~~~g~a~D-L~~~-~~~~-~~~~i~~~~d~~-~~~~aDi   90 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISIL-MKDLADELALVDVIEDKLKGEMMD-LQHG-SLFL-KTPKIVSSKDYS-VTANSKL   90 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSCHHHHHHHHHH-HHHT-GGGC-SCCEEEECSSGG-GGTTEEE
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHH-hCCCCceEEEEeCChHHHHHHHHh-hhhh-hhcc-CCCeEEEcCCHH-HhCCCCE
Confidence            356789999999999999998874 3354  899999875432211111 1000 0000 011112234555 4899999


Q ss_pred             EEEccCCCc---cccc-cc--cH-------HHHhcCCCCcEEEEcCC
Q 022672          148 ISLHPVLDK---TTYH-LI--NK-------ERLATMKKEAILVNCSR  181 (294)
Q Consensus       148 V~l~~Plt~---~t~~-li--~~-------~~l~~mk~gailIN~aR  181 (294)
                      |+++.....   .|+- ++  |.       +.+....|++++++++.
T Consensus        91 Vvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           91 VIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            999864221   1221 22  11       12333478999999974

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.32  E-value=0.024  Score=53.89  Aligned_cols=97  Identities=13%  Similarity=0.122  Sum_probs=65.7

Q ss_pred             CcccCCCEEEEEcCC----------hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 022672           68 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  137 (294)
Q Consensus        68 g~~l~gktvGIIGlG----------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (294)
                      +..+.|++|+|+|+-          .=...+++.| ...|++|.+|||........   .++          .......+
T Consensus       313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~~----------~~~~~~~~  378 (450)
T 3gg2_A          313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKL-LEVGCRVRVYDPVAMKEAQK---RLG----------DKVEYTTD  378 (450)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSCHHHHHH---HHG----------GGSEECSS
T ss_pred             cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCcHHHHH---hcC----------ccceecCC
Confidence            346899999999984          3357888887 68999999999987532111   111          01223468


Q ss_pred             HHHHhhcCCEEEEccCCCccccccccHH-HHhcCCCCcEEEEcCCC
Q 022672          138 MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRG  182 (294)
Q Consensus       138 l~ell~~aDiV~l~~Plt~~t~~li~~~-~l~~mk~gailIN~aRG  182 (294)
                      +++.++.+|.|++++. -++-+. ++-+ ..+.|+ +.+++|+ |+
T Consensus       379 ~~~~~~~ad~~vi~t~-~~~f~~-~~~~~~~~~~~-~~~i~D~-r~  420 (450)
T 3gg2_A          379 MYDAVRGAEALFHVTE-WKEFRM-PDWSALSQAMA-ASLVIDG-RN  420 (450)
T ss_dssp             HHHHTTTCSCEEECSC-CGGGSS-CCHHHHHHHSS-SCEEEES-SC
T ss_pred             HHHHhcCCCEEEEccC-CHHHhh-cCHHHHHHhcC-CCEEEEC-CC
Confidence            8999999999999987 233333 3444 445566 5688885 54

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.31  E-value=0.0034  Score=57.68  Aligned_cols=95  Identities=14%  Similarity=0.170  Sum_probs=61.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc---hhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHh---
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVL---  142 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell---  142 (294)
                      .+.|++|.|+|.|.||..+++.+ +.+|++|++.+++.   ... + +...++       .... . .. ++ +++.   
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~~~~-~-~~~~~g-------a~~v-~-~~-~~~~~~~~~~  244 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLF-RTYGLEVWMANRREPTEVEQ-T-VIEETK-------TNYY-N-SS-NGYDKLKDSV  244 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHH-HHHTCEEEEEESSCCCHHHH-H-HHHHHT-------CEEE-E-CT-TCSHHHHHHH
T ss_pred             cCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCccchHHH-H-HHHHhC-------Ccee-c-hH-HHHHHHHHhC
Confidence            57799999999999999999985 78899999999876   332 1 111111       1101 0 00 11 1211   


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      ...|+|+.++......   + +..+..|+++..+|+++-
T Consensus       245 ~~~d~vid~~g~~~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          245 GKFDVIIDATGADVNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CCEEEEEECCCCCTHH---H-HHHGGGEEEEEEEEECSC
T ss_pred             CCCCEEEECCCChHHH---H-HHHHHHHhcCCEEEEEec
Confidence            3589999988732211   1 556788899999998864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.31  E-value=0.007  Score=55.44  Aligned_cols=96  Identities=18%  Similarity=0.163  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccC-CHHH-HhhcCCEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-SMDE-VLREADVIS  149 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~e-ll~~aDiV~  149 (294)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++..... . ...+       +....-..... ++.+ +....|+|+
T Consensus       179 ~g~~VlV~GaG~vG~~~~qla-k~~Ga~Vi~~~~~~~~~~-~-~~~l-------Ga~~v~~~~~~~~~~~~~~~~~D~vi  248 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLIS-KAMGAETYVISRSSRKRE-D-AMKM-------GADHYIATLEEGDWGEKYFDTFDLIV  248 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSSTTHH-H-HHHH-------TCSEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHH-H-HHHc-------CCCEEEcCcCchHHHHHhhcCCCEEE
Confidence            478999999999999999974 789999999997654421 1 1111       11111000111 3333 224789999


Q ss_pred             EccCCC-ccccccccHHHHhcCCCCcEEEEcCC
Q 022672          150 LHPVLD-KTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       150 l~~Plt-~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      -++..+ +.+   + ...++.|+++..+|.++.
T Consensus       249 d~~g~~~~~~---~-~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          249 VCASSLTDID---F-NIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             ECCSCSTTCC---T-TTGGGGEEEEEEEEECCC
T ss_pred             ECCCCCcHHH---H-HHHHHHhcCCCEEEEecC
Confidence            998742 111   1 456678899999998864

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.30  E-value=0.0041  Score=48.55  Aligned_cols=99  Identities=15%  Similarity=0.123  Sum_probs=66.9

Q ss_pred             CEEEEEcC----ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           74 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        74 ktvGIIGl----G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ++|+|||.    +..|..+.+.| +..|.+|+-.+|.....                   .+...+.++.++-. -|+++
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L-~~~g~~V~pVnP~~~~i-------------------~G~~~y~sl~dlp~-vDlav   63 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERL-KSHGHEFIPVGRKKGEV-------------------LGKTIINERPVIEG-VDTVT   63 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHH-HHHTCCEEEESSSCSEE-------------------TTEECBCSCCCCTT-CCEEE
T ss_pred             CEEEEEccCCCCCCHHHHHHHHH-HHCCCeEEEECCCCCcC-------------------CCeeccCChHHCCC-CCEEE
Confidence            57999998    67999999998 57788999999865321                   12233467777767 99999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +++| .+.+..++. +..+ +...+++++.+-    .++++.+.+++..+.
T Consensus        64 i~~p-~~~v~~~v~-e~~~-~g~k~v~~~~G~----~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           64 LYIN-PQNQLSEYN-YILS-LKPKRVIFNPGT----ENEELEEILSENGIE  107 (122)
T ss_dssp             ECSC-HHHHGGGHH-HHHH-HCCSEEEECTTC----CCHHHHHHHHHTTCE
T ss_pred             EEeC-HHHHHHHHH-HHHh-cCCCEEEECCCC----ChHHHHHHHHHcCCe
Confidence            9999 345555553 3332 334466665432    356777777776664

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.30  E-value=0.0074  Score=54.73  Aligned_cols=94  Identities=14%  Similarity=0.181  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh----cCCE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR----EADV  147 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----~aDi  147 (294)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++.... + +..       ..+....-.....++.+.+.    ..|+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~-~-~~~-------~lGa~~~i~~~~~~~~~~~~~~~g~~d~  235 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYA-RAMGLRVAAVDIDDAKL-N-LAR-------RLGAEVAVNARDTDPAAWLQKEIGGAHG  235 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHH-HHTTCEEEEEESCHHHH-H-HHH-------HTTCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeCCHHHH-H-HHH-------HcCCCEEEeCCCcCHHHHHHHhCCCCCE
Confidence            578999999999999999874 78999999999876542 1 111       11211110011123333332    5788


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      |+.+... +++    -...+..++++..++.++
T Consensus       236 vid~~g~-~~~----~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          236 VLVTAVS-PKA----FSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             EEESSCC-HHH----HHHHHHHEEEEEEEEECS
T ss_pred             EEEeCCC-HHH----HHHHHHHhccCCEEEEeC
Confidence            8887752 221    256677888888888875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.30  E-value=0.0079  Score=54.79  Aligned_cols=92  Identities=17%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++..... . ..       ..+.... +   .+.+++.+..|+|+-+
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~-~-~~-------~lGa~~v-~---~~~~~~~~~~D~vid~  241 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYA-VAMGAEVSVFARNEHKKQ-D-AL-------SMGVKHF-Y---TDPKQCKEELDFIIST  241 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHTTCEEEEECSSSTTHH-H-HH-------HTTCSEE-E---SSGGGCCSCEEEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-H-HH-------hcCCCee-c---CCHHHHhcCCCEEEEC
Confidence            578999999999999999874 789999999987765431 1 11       1121111 1   2223333378999988


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      +... ++    -...++.++++..++.++..
T Consensus       242 ~g~~-~~----~~~~~~~l~~~G~iv~~G~~  267 (348)
T 3two_A          242 IPTH-YD----LKDYLKLLTYNGDLALVGLP  267 (348)
T ss_dssp             CCSC-CC----HHHHHTTEEEEEEEEECCCC
T ss_pred             CCcH-HH----HHHHHHHHhcCCEEEEECCC
Confidence            8732 11    25677889999999988643

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.29  E-value=0.0084  Score=54.43  Aligned_cols=96  Identities=14%  Similarity=0.194  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh----hcCCE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----READV  147 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~~aDi  147 (294)
                      .|++|.|+|.|.||..+++.+ +.+|++|++.+++.... +. ....       +....-.....++.+.+    ...|+
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~~-~~~l-------Ga~~~~d~~~~~~~~~~~~~~~~~d~  233 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKL-EL-AKEL-------GADLVVNPLKEDAAKFMKEKVGGVHA  233 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH-HH-HHHT-------TCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH-HH-HHHC-------CCCEEecCCCccHHHHHHHHhCCCCE
Confidence            478999999999999999985 78999999999875432 11 1111       11110000112333222    46899


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      |+.++.. +.+    -...++.|+++..+|.++..
T Consensus       234 vid~~g~-~~~----~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          234 AVVTAVS-KPA----FQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             EEESSCC-HHH----HHHHHHHEEEEEEEEECCCC
T ss_pred             EEECCCC-HHH----HHHHHHHhhcCCEEEEeccc
Confidence            9988863 121    25667888999999988653

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.28  E-value=0.0079  Score=50.70  Aligned_cols=103  Identities=11%  Similarity=0.213  Sum_probs=60.5

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      |++.|.| .|.||+.+++.|++.-|++|++.+++.....+.+... ...+.   ....+.....+++++++++|+|+.+.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~---~~~~D~~d~~~~~~~~~~~d~vv~~a   81 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIID-HERVT---VIEGSFQNPGXLEQAVTNAEVVFVGA   81 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHT-STTEE---EEECCTTCHHHHHHHHTTCSEEEESC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccC-CCceE---EEECCCCCHHHHHHHHcCCCEEEEcC
Confidence            6799999 5999999999984268999999998765111111000 00000   00001112245677889999999988


Q ss_pred             CCCccccccccHHHHhcCCC-C-cEEEEcCCCcc
Q 022672          153 VLDKTTYHLINKERLATMKK-E-AILVNCSRGPV  184 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~-g-ailIN~aRG~~  184 (294)
                      ... ...   ....+..|+. + ..||++|....
T Consensus        82 g~~-n~~---~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           82 MES-GSD---MASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             CCC-HHH---HHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             CCC-Chh---HHHHHHHHHhcCCCeEEEEeecee
Confidence            642 111   3445555532 2 36888765443

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=96.28  E-value=0.01  Score=53.53  Aligned_cols=109  Identities=14%  Similarity=0.099  Sum_probs=69.5

Q ss_pred             ccCCCEEEEE-cC-ChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--c
Q 022672           70 LLKGQTVGVI-GA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E  144 (294)
Q Consensus        70 ~l~gktvGII-Gl-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~  144 (294)
                      .+..+++.|| |+ |+.|+.+++.| +.+|++++ ..+|.....                 .-.+...+.+++|+.+  .
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l-~~~G~~~v~~VnP~~~g~-----------------~i~G~~vy~sl~el~~~~~   71 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQA-LEYGTNLVGGTTPGKGGK-----------------THLGLPVFNTVKEAKEQTG   71 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHHC
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHH-HHCCCcEEEEeCCCcCcc-----------------eECCeeeechHHHhhhcCC
Confidence            4667889999 99 99999999987 57888844 566643110                 0112334568999988  8


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcC-Ccc
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQN-PMF  200 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~~aL~~g-~i~  200 (294)
                      .|++++++|. +.....+ ++..+. .- ..+|+.+-|-. -++..+.+..++. .+.
T Consensus        72 vD~avI~vP~-~~~~~~~-~e~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           72 ATASVIYVPP-PFAAAAI-NEAIDA-EV-PLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             CCEEEECCCH-HHHHHHH-HHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             CCEEEEecCH-HHHHHHH-HHHHHC-CC-CEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            9999999993 3333333 333331 11 23466666643 2344788888776 543

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=96.28  E-value=0.0076  Score=56.11  Aligned_cols=72  Identities=13%  Similarity=0.161  Sum_probs=48.4

Q ss_pred             CCEEEEEcCCh---HHHHHHHHHhhcCCCEEEE--EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---
Q 022672           73 GQTVGVIGAGR---IGSAYARMMVEGFKMNLIY--YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---  144 (294)
Q Consensus        73 gktvGIIGlG~---IG~~vA~~L~~~~g~~V~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---  144 (294)
                      -.+|||||+|.   ||+..+..+...-++++++  +|+++... +.+.+.+       +...  ...+.++++++++   
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a-~~~a~~~-------g~~~--~~~~~~~~~ll~~~~~   81 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRG-SAFGEQL-------GVDS--ERCYADYLSMFEQEAR   81 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHH-HHHHHHT-------TCCG--GGBCSSHHHHHHHHTT
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHH-HHHHHHh-------CCCc--ceeeCCHHHHHhcccc
Confidence            35799999999   9999888764333578764  68876542 2222221       1110  1345799999975   


Q ss_pred             ----CCEEEEccCC
Q 022672          145 ----ADVISLHPVL  154 (294)
Q Consensus       145 ----aDiV~l~~Pl  154 (294)
                          .|+|++|+|.
T Consensus        82 ~~~~vD~V~i~tp~   95 (398)
T 3dty_A           82 RADGIQAVSIATPN   95 (398)
T ss_dssp             CTTCCSEEEEESCG
T ss_pred             cCCCCCEEEECCCc
Confidence                8999999994

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.28  E-value=0.019  Score=53.06  Aligned_cols=97  Identities=13%  Similarity=0.238  Sum_probs=54.7

Q ss_pred             CCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ..+|+|+| +|.||+.+.+.|...-.+++.+........ ..+...++. +...-..+..   ..+ ++.+.++|+|++|
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g-~~~~~~~~~-~~~~v~~dl~---~~~-~~~~~~vDvVf~a   89 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG-QSMESVFPH-LRAQKLPTLV---SVK-DADFSTVDAVFCC   89 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT-SCHHHHCGG-GTTSCCCCCB---CGG-GCCGGGCSEEEEC
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC-CCHHHhCch-hcCcccccce---ecc-hhHhcCCCEEEEc
Confidence            36899999 899999999998533356887765432211 111111110 0000001111   112 4456789999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +|... +     .+.....+.|+.+|+.+-
T Consensus        90 tp~~~-s-----~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           90 LPHGT-T-----QEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             CCTTT-H-----HHHHHTSCTTCEEEECSS
T ss_pred             CCchh-H-----HHHHHHHhCCCEEEECCc
Confidence            98432 2     333322377899999874

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=96.26  E-value=0.0072  Score=55.87  Aligned_cols=134  Identities=12%  Similarity=0.143  Sum_probs=85.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      -.++-|+|.|.+|+++|+.+ +.+|++|+++|+++...                          + .+-++.+|-++...
T Consensus       199 ~~~L~I~GaGhva~aLa~la-~~lgf~V~v~D~R~~~~--------------------------~-~~~fp~a~~v~~~~  250 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFA-SNVGFYTVVTDWRPNQC--------------------------E-KHFFPDADEIIVDF  250 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHH-HHHTEEEEEEESCGGGG--------------------------C-GGGCTTCSEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCeEEEECCCcccc--------------------------c-cccCCCceEEecCC
Confidence            35799999999999999985 78999999999876421                          0 11134566555544


Q ss_pred             CCCccccccccHHHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee--------CCCCCCCCCCCccCCCC
Q 022672          153 VLDKTTYHLINKERLAT--MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD--------VFEDEPYMKPGLSEMKN  222 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~--mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD--------V~~~EP~~~~~L~~~~n  222 (294)
                      |          .+.+..  +.+++.+|=+.++.-.|...|.++|++ .....++=        ..+..-       . +.
T Consensus       251 p----------~~~~~~~~~~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG~iGSr~R~~rl~~~g~-------~-~~  311 (362)
T 3on5_A          251 P----------ADFLRKFLIRPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIGILGSKERTRRLLQNRK-------P-PD  311 (362)
T ss_dssp             H----------HHHHHHSCCCTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEEESSCHHHHHHHHTSCC-------C-CT
T ss_pred             H----------HHHHhhcCCCCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEEEeCCHHHHHHHHhcCC-------c-Hh
Confidence            4          333333  567788888888888888888888876 34444330        111110       0 11


Q ss_pred             eEEcc---CCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 022672          223 AIVVP---HIASASKWTREGMATLAALNVLGKIKGYP  256 (294)
Q Consensus       223 viiTP---Hia~~t~~~~~~~~~~~~~nl~~~~~g~~  256 (294)
                      -+-+|   -|++-|.+   .++-.++..|.+..+|++
T Consensus       312 ri~~PIGL~Iga~tP~---EIAvSI~AEiia~~~~~~  345 (362)
T 3on5_A          312 HLYSPVGLSIDAQGPE---EIAISIVAQLIQLIRSRK  345 (362)
T ss_dssp             TEESSCSCCSCCCSHH---HHHHHHHHHHHHHHHHSC
T ss_pred             heECCCCCCCCCCCHH---HHHHHHHHHHHHHHhCCC
Confidence            24555   46777764   445555666777777774

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.25  E-value=0.026  Score=51.85  Aligned_cols=95  Identities=16%  Similarity=0.079  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccc-cCCHHHHhh-----
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR-----  143 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~ell~-----  143 (294)
                      .|++|.|+|.|.||...++. ++.+|+ +|++.+++.... +. ..       ..+.... .... ..++.+.+.     
T Consensus       195 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~-~~-a~-------~lGa~~vi~~~~~~~~~~~~v~~~~~~  264 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIG-CKIAGASRIIAIDINGEKF-PK-AK-------ALGATDCLNPRELDKPVQDVITELTAG  264 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEECSCGGGH-HH-HH-------HTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHHH-HH-HH-------HhCCcEEEccccccchHHHHHHHHhCC
Confidence            57899999999999999997 478999 899998776542 11 11       1121111 0110 023444332     


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCC-cEEEEcCC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  181 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~g-ailIN~aR  181 (294)
                      ..|+|+-++.. +++    -...++.++++ ..+|.++-
T Consensus       265 g~Dvvid~~G~-~~~----~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          265 GVDYSLDCAGT-AQT----LKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CBSEEEESSCC-HHH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CccEEEECCCC-HHH----HHHHHHHhhcCCCEEEEECC
Confidence            48999988862 222    15677888998 88888753

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.24  E-value=0.015  Score=52.12  Aligned_cols=98  Identities=13%  Similarity=0.100  Sum_probs=59.1

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+|+|+| +|+||+.+++.+...-++++.+ +|+........   ..++ +  .+....++....++++++.++|+|+-+
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~---d~ge-l--~G~~~~gv~v~~dl~~ll~~aDVvIDF   95 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDK---DASI-L--IGSDFLGVRITDDPESAFSNTEGILDF   95 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTS---BGGG-G--TTCSCCSCBCBSCHHHHTTSCSEEEEC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc---chHH-h--hccCcCCceeeCCHHHHhcCCCEEEEc
Confidence            4799999 9999999999875556888765 57653221000   0000 0  111233444567999999999999877


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      .+  ++..   .......++.|.-+|-...|
T Consensus        96 T~--p~a~---~~~~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A           96 SQ--PQAS---VLYANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             SC--HHHH---HHHHHHHHHHTCEEEECCCC
T ss_pred             CC--HHHH---HHHHHHHHHcCCCEEEECCC
Confidence            65  2221   12222334556666665566

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.24  E-value=0.0086  Score=56.83  Aligned_cols=120  Identities=19%  Similarity=0.153  Sum_probs=69.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc-CCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDiV  148 (294)
                      ++.||+|.|||+|..|.++|+.| ...|++|.++|.+...... ..    +.+...+   +.+..-...++++.+ +|+|
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l-~~~G~~V~~~D~~~~~~~~-~~----~~L~~~g---i~~~~g~~~~~~~~~~~d~v   76 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLL-AKLGAIVTVNDGKPFDENP-TA----QSLLEEG---IKVVCGSHPLELLDEDFCYM   76 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHH-HHTTCEEEEEESSCGGGCH-HH----HHHHHTT---CEEEESCCCGGGGGSCEEEE
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEeCCcccCCh-HH----HHHHhCC---CEEEECCChHHhhcCCCCEE
Confidence            57899999999999999999987 6899999999986531100 00    0122222   111111123345666 8999


Q ss_pred             EEccCCCccc----------cccccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672          149 SLHPVLDKTT----------YHLINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       149 ~l~~Plt~~t----------~~li~~-~~l~~-mk~gailIN~aRG~~vd~~aL~~aL~~g~  198 (294)
                      ++..-..++.          ..++.+ +++.. ++...+-|--+.|+.--..=+...|+...
T Consensus        77 v~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  138 (451)
T 3lk7_A           77 IKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG  138 (451)
T ss_dssp             EECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             EECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            8864332221          113333 33433 33333444445787776666667776543

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=96.24  E-value=0.014  Score=52.10  Aligned_cols=103  Identities=21%  Similarity=0.200  Sum_probs=61.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhh---cCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCE
Q 022672           74 QTVGVIGAGRIGSAYARMMVE---GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  147 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~---~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  147 (294)
                      .+|||||+|.||+..++.+..   .-+++++ ++|++....             .     .+.. ..+++++++  +.|+
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~-------------~-----~g~~-~~~~~ell~~~~vD~   68 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGS-------------L-----DEVR-QISLEDALRSQEIDV   68 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCE-------------E-----TTEE-BCCHHHHHHCSSEEE
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHHH-------------H-----cCCC-CCCHHHHhcCCCCCE
Confidence            479999999999999888743   2467766 466542110             0     1111 368999997  6899


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcc
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      |++++|.  .++.-+-.   +.++.|. +++.- ---.+-+.++|.++.++..+.
T Consensus        69 V~i~tp~--~~H~~~~~---~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  118 (294)
T 1lc0_A           69 AYICSES--SSHEDYIR---QFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (294)
T ss_dssp             EEECSCG--GGHHHHHH---HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             EEEeCCc--HhHHHHHH---HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence            9999993  33322223   3344444 56653 111233446677777655443

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.23  E-value=0.013  Score=51.56  Aligned_cols=41  Identities=27%  Similarity=0.204  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhH
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  110 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~  110 (294)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|+..+++....
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~~~~~   68 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLA-LEGAAVALTYVNAAER   68 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCCHHH
Confidence            3589999999987 789999999984 7899999886655433

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.22  E-value=0.0018  Score=55.52  Aligned_cols=102  Identities=11%  Similarity=0.101  Sum_probs=61.4

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhcCC
Q 022672           71 LKGQTVGVIG-AGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREAD  146 (294)
Q Consensus        71 l~gktvGIIG-lG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~aD  146 (294)
                      ...|+|.|.| .|.||+.+++.| ...| .+|++++++.......         ...+..  ..+.....+++++++++|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L-~~~G~~~V~~~~R~~~~~~~~---------~~~~~~~~~~Dl~d~~~~~~~~~~~D   90 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQL-ADKQTIKQTLFARQPAKIHKP---------YPTNSQIIMGDVLNHAALKQAMQGQD   90 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHH-TTCTTEEEEEEESSGGGSCSS---------CCTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHH-HhCCCceEEEEEcChhhhccc---------ccCCcEEEEecCCCHHHHHHHhcCCC
Confidence            4468999999 599999999998 5778 8999999876432110         000000  001112245678889999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCC--CcEEEEcCCCcc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKK--EAILVNCSRGPV  184 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~--gailIN~aRG~~  184 (294)
                      +|+.+......  ....+..+..|+.  ...||++|....
T Consensus        91 ~vv~~a~~~~~--~~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A           91 IVYANLTGEDL--DIQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             EEEEECCSTTH--HHHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             EEEEcCCCCch--hHHHHHHHHHHHHcCCCEEEEEeccee
Confidence            99988764321  1112344444432  246888876443

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=96.22  E-value=0.019  Score=52.74  Aligned_cols=69  Identities=14%  Similarity=0.212  Sum_probs=46.9

Q ss_pred             CCEEEEEcCChHHH-HHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEE
Q 022672           73 GQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  148 (294)
Q Consensus        73 gktvGIIGlG~IG~-~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV  148 (294)
                      -.+|||||+|.+|. .++..+ +.-+++++ ++|+++... +.+.+.+       +.    ...+.++++++++  .|+|
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~-~~~~~~lvav~d~~~~~a-~~~a~~~-------~~----~~~~~~~~~ll~~~~vD~V   92 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCL-LRAGARLAGFHEKDDALA-AEFSAVY-------AD----ARRIATAEEILEDENIGLI   92 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHH-HHTTCEEEEEECSCHHHH-HHHHHHS-------SS----CCEESCHHHHHTCTTCCEE
T ss_pred             CcEEEEECcCHHHHHHHHHHh-hcCCcEEEEEEcCCHHHH-HHHHHHc-------CC----CcccCCHHHHhcCCCCCEE
Confidence            35899999999995 566665 45788866 578776432 2222221       10    1245799999975  8999


Q ss_pred             EEccCC
Q 022672          149 SLHPVL  154 (294)
Q Consensus       149 ~l~~Pl  154 (294)
                      ++++|.
T Consensus        93 ~I~tp~   98 (361)
T 3u3x_A           93 VSAAVS   98 (361)
T ss_dssp             EECCCH
T ss_pred             EEeCCh
Confidence            999993

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=96.21  E-value=0.2  Score=46.05  Aligned_cols=144  Identities=14%  Similarity=0.088  Sum_probs=85.8

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY   88 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~v   88 (294)
                      +.++-.+|+|-|.-|....++-  +|+=++.+.++.                    .+..+.|.+|++||=+  ++.++.
T Consensus       141 ~la~~s~vPVING~g~~~HPtQ--aL~Dl~Ti~e~~--------------------~~~~l~gl~ia~vGD~~~~va~S~  198 (358)
T 4h31_A          141 ELGAFAGVPVWNGLTDEFHPTQ--ILADFLTMLEHS--------------------QGKALADIQFAYLGDARNNVGNSL  198 (358)
T ss_dssp             HHHHHSSSCEEESCCSSCCHHH--HHHHHHHHHHTT--------------------TTCCGGGCEEEEESCTTSHHHHHH
T ss_pred             HhhhhccCceECCCCcCCCchH--HHHHHHHHHHHh--------------------cCCCcCceEEEecCCCCcccchHH
Confidence            4566778999996665544432  333333333211                    1236899999999964  799999


Q ss_pred             HHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC----Ccc-------
Q 022672           89 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL----DKT-------  157 (294)
Q Consensus        89 A~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl----t~~-------  157 (294)
                      +..+ ..||++|....|..-...+.+.+.........+   ..+....+++|.++++|+|..-.=-    .++       
T Consensus       199 ~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g---~~v~~~~d~~eav~~aDvvyt~~w~s~~~~~~~~~~~~~  274 (358)
T 4h31_A          199 MVGA-AKMGMDIRLVGPQAYWPDEELVAACQAIAKQTG---GKITLTENVAEGVQGCDFLYTDVWVSMGESPEAWDERVA  274 (358)
T ss_dssp             HHHH-HHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHH
T ss_pred             HHHH-HhcCceEEEeCCcccCCCHHHHHHHHHHHHHcC---CcceeccCHHHHhccCcEEEEEEEEEcccCchhHHHHHH
Confidence            9876 689999999887532111111111100111111   2233457899999999999753211    111       


Q ss_pred             --ccccccHHHHhc-CCCCcEEEEcC
Q 022672          158 --TYHLINKERLAT-MKKEAILVNCS  180 (294)
Q Consensus       158 --t~~li~~~~l~~-mk~gailIN~a  180 (294)
                        ...-++.+.++. .||+++|..+.
T Consensus       275 ~~~~y~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          275 LMKPYQVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             HHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred             HHhCcccCHHHHHhcCCCCcEEECCC
Confidence              113367788875 47899999874

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=96.21  E-value=0.026  Score=51.03  Aligned_cols=104  Identities=19%  Similarity=0.263  Sum_probs=61.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc---cCCHHHHhhcCCE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADV  147 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aDi  147 (294)
                      ++|+|+|. |.+|..++..|+ ..|  .++..+|......  . ...    +.. ...+.....   ..++++.+++||+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~-~~~~~~ev~L~Di~~~~~--~-a~d----L~~-~~~~~~l~~~~~t~d~~~a~~~aDv   71 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTPG--V-AAD----LSH-IETRATVKGYLGPEQLPDCLKGCDV   71 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHHH--H-HHH----HTT-SSSSCEEEEEESGGGHHHHHTTCSE
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCcEEEEEeCCccHH--H-HHH----Hhc-cCcCceEEEecCCCCHHHHhCCCCE
Confidence            37999998 999999999874 445  6899999876211  1 111    111 111111222   1468888999999


Q ss_pred             EEEccCCCcccccc-------cc----HH---HHhcCCCCcEEEEcCCCcccCHHH
Q 022672          148 ISLHPVLDKTTYHL-------IN----KE---RLATMKKEAILVNCSRGPVIDEVA  189 (294)
Q Consensus       148 V~l~~Plt~~t~~l-------i~----~~---~l~~mk~gailIN~aRG~~vd~~a  189 (294)
                      |+++.... ...+.       .|    .+   .+....|++++|++  ...+|.-.
T Consensus        72 Vvi~ag~~-~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~~  124 (314)
T 1mld_A           72 VVIPAGVP-RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNSTI  124 (314)
T ss_dssp             EEECCSCC-CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHHH
T ss_pred             EEECCCcC-CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchhH
Confidence            99997532 21111       01    11   12223588899997  44566544

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.20  E-value=0.024  Score=52.06  Aligned_cols=95  Identities=17%  Similarity=0.064  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccc-cCCHHHHhh-----
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR-----  143 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~ell~-----  143 (294)
                      .|++|.|+|.|.||...++. ++.+|+ +|++.+++.... +. ..       ..+.... .... ..++.+.+.     
T Consensus       191 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~-~~-a~-------~lGa~~vi~~~~~~~~~~~~i~~~t~g  260 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVG-CKAAGASRIIGVGTHKDKF-PK-AI-------ELGATECLNPKDYDKPIYEVICEKTNG  260 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHHTCSEEEEECSCGGGH-HH-HH-------HTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEECCCHHHH-HH-HH-------HcCCcEEEecccccchHHHHHHHHhCC
Confidence            57899999999999999987 478999 899998776542 11 11       1121111 0110 023444332     


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCC-cEEEEcCC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  181 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~g-ailIN~aR  181 (294)
                      ..|+|+-++.. +++    -...++.++++ ..+|.++-
T Consensus       261 g~Dvvid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          261 GVDYAVECAGR-IET----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CCCEEEECCCC-HHH----HHHHHHHHhcCCCEEEEEcc
Confidence            58999988862 222    15677889998 88888753

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.20  E-value=0.027  Score=51.89  Aligned_cols=101  Identities=16%  Similarity=0.217  Sum_probs=56.8

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCC------CEEEEEcC-Cch-hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFK------MNLIYYDL-YQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  144 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g------~~V~~~d~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  144 (294)
                      ++|+|+| .|.+|+.+.+.|. ..+      .++..+.. +.. ......   +. .+.  +........ .+.++ +.+
T Consensus        10 ~kVaIvGATG~vG~~llr~L~-~~~~~~~~~~ei~~l~s~~~agk~~~~~---~~-~l~--~~~~~~~~~-~~~~~-~~~   80 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLL-GHPAYADGRLRIGALTAATSAGSTLGEH---HP-HLT--PLAHRVVEP-TEAAV-LGG   80 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHH-TCHHHHTTSEEEEEEEESSCTTSBGGGT---CT-TCG--GGTTCBCEE-CCHHH-HTT
T ss_pred             CEEEEECCCCHHHHHHHHHHH-cCCCCCCccEEEEEEECCCcCCCchhhh---cc-ccc--ccceeeecc-CCHHH-hcC
Confidence            6899999 9999999999974 444      57766542 211 111100   00 000  001111111 23333 568


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA  189 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~a  189 (294)
                      +|+|++|+|...      .++....++.|+.+|+.|----.+.++
T Consensus        81 ~DvVf~alg~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~  119 (352)
T 2nqt_A           81 HDAVFLALPHGH------SAVLAQQLSPETLIIDCGADFRLTDAA  119 (352)
T ss_dssp             CSEEEECCTTSC------CHHHHHHSCTTSEEEECSSTTTCSCHH
T ss_pred             CCEEEECCCCcc------hHHHHHHHhCCCEEEEECCCccCCcch
Confidence            999999999542      344444446789999987544444333

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.19  E-value=0.048  Score=49.55  Aligned_cols=107  Identities=15%  Similarity=0.094  Sum_probs=68.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.|++|++||= +++.++.+..+ ..+|++|....|..-...+.+.+...+.....+   ..+....+++|.++++|+|
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~v~~~~d~~eav~~aDvv  229 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGC-AKVGMSIAVATPEGFTPDPAVSARASEIAGRTG---AEVQILRDPFEAARGAHIL  229 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC---CeEEEECCHHHHhcCCCEE
Confidence            488999999997 67888888776 578999998877532111111110000001111   1233457899999999999


Q ss_pred             EEccCCC----c---c-----ccccccHHHHhcCCCCcEEEEcC
Q 022672          149 SLHPVLD----K---T-----TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       149 ~l~~Plt----~---~-----t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ..-.=-.    .   +     ...-++.+.++.+|++++|..+.
T Consensus       230 yt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl  273 (323)
T 3gd5_A          230 YTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL  273 (323)
T ss_dssp             EECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             EEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence            6653110    0   0     12357899999999999999874

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.19  E-value=0.012  Score=51.56  Aligned_cols=41  Identities=20%  Similarity=0.199  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhH
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  110 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~  110 (294)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|+..+++....
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~-~~G~~V~~~~~~~~~~   55 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLG-RLGAKVVVNYANSTKD   55 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHH-HTTCEEEEEESSCHHH
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCCHHH
Confidence            4699999999987 689999999984 7899999877654443

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.19  E-value=0.0097  Score=54.82  Aligned_cols=95  Identities=19%  Similarity=0.189  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-------
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-------  143 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-------  143 (294)
                      .|++|.|+|.|.+|...++. ++.+|+ +|++.+++.... + +...+       +..........++.+.+.       
T Consensus       182 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~-~-~a~~l-------Ga~~vi~~~~~~~~~~i~~~~~~~~  251 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQL-ARLAGATTVILSTRQATKR-R-LAEEV-------GATATVDPSAGDVVEAIAGPVGLVP  251 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEECSCHHHH-H-HHHHH-------TCSEEECTTSSCHHHHHHSTTSSST
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHH-H-HHHHc-------CCCEEECCCCcCHHHHHHhhhhccC
Confidence            47899999999999999987 489999 899998876442 1 11111       211111111234444443       


Q ss_pred             -cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          144 -EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       144 -~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                       ..|+|+-++.. +++    -...+..++++..+|.++-
T Consensus       252 gg~Dvvid~~G~-~~~----~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          252 GGVDVVIECAGV-AET----VKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             TCEEEEEECSCC-HHH----HHHHHHHEEEEEEEEECSC
T ss_pred             CCCCEEEECCCC-HHH----HHHHHHHhccCCEEEEEec
Confidence             37899888752 222    2566778889998888864

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.17  E-value=0.012  Score=53.69  Aligned_cols=117  Identities=16%  Similarity=0.236  Sum_probs=68.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhc--------CCCEEEE-EcCCchhH----HHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 022672           74 QTVGVIGAGRIGSAYARMMVEG--------FKMNLIY-YDLYQATR----LEKFVTAYGQFLKANGEQPVTWKRASSMDE  140 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~--------~g~~V~~-~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  140 (294)
                      .+|||||+|.||+.+++.+...        .+.+|.+ +|++....    .......   . ....  .  +....++++
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~---~-~~~~--~--~~~~~d~~~   74 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRM---K-RETG--M--LRDDAKAIE   74 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHH---H-HHHS--S--CSBCCCHHH
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhh---h-ccCc--c--ccCCCCHHH
Confidence            3799999999999999987544        6788765 56553221    0010000   0 0000  0  000238999


Q ss_pred             Hhh--cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc
Q 022672          141 VLR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  199 (294)
Q Consensus       141 ll~--~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v-d~~aL~~aL~~g~i  199 (294)
                      ++.  +.|+|+.|.|....+.. .-.-....|+.|.-+|....+.+. +-+.|.++.++...
T Consensus        75 ll~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~  135 (327)
T 3do5_A           75 VVRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGV  135 (327)
T ss_dssp             HHHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTC
T ss_pred             HhcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCC
Confidence            985  48999999984322222 223356678888888876555543 45667777766654

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=96.17  E-value=0.05  Score=49.52  Aligned_cols=151  Identities=14%  Similarity=0.124  Sum_probs=86.9

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCC--hHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY   88 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~v   88 (294)
                      +.++..+|+|-|.-.-...++  .+++=++.+.++...      .+    +     ....+.|++|++||=|  ++.+++
T Consensus       116 ~lA~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~g~------~~----~-----~~~~l~gl~va~vGD~~~~va~Sl  178 (328)
T 3grf_A          116 EMAQHASVPCINALDDFGHPL--QMVCDFMTIKEKFTA------AG----E-----FSNGFKGIKFAYCGDSMNNVTYDL  178 (328)
T ss_dssp             HHHHHCSSCEEESSCSSCCHH--HHHHHHHHHHHHHHH------TT----C-----CTTTGGGCCEEEESCCSSHHHHHH
T ss_pred             HHHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHhCC------cc----c-----cccccCCcEEEEeCCCCcchHHHH
Confidence            345667889999866544443  223333333332100      00    0     1135899999999986  888888


Q ss_pred             HHHHhhcCCCEEEEEcCCchh--HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc----cCCCc-c----
Q 022672           89 ARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH----PVLDK-T----  157 (294)
Q Consensus        89 A~~L~~~~g~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~----~Plt~-~----  157 (294)
                      +..+ ..||++|....|..-.  ..+.+.+.........+ ....+....+++|.++++|+|..-    +-... +    
T Consensus       179 ~~~~-~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~-~g~~v~~~~d~~eav~~aDvvytd~W~sm~iq~er~~~~  256 (328)
T 3grf_A          179 MRGC-ALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHG-TGGSIKIFHDCKKGCEGVDVVYTDSWMSYHITKEQKEAR  256 (328)
T ss_dssp             HHHH-HHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHT-CCCEEEEESSHHHHHTTCSEEEECCCC--------CCTH
T ss_pred             HHHH-HHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhcc-CCCeEEEEcCHHHHhcCCCEEEecCccccCCcHHHHHHH
Confidence            8876 5789999998875322  11111111000011100 112234457999999999999763    11011 1    


Q ss_pred             ----ccccccHHHHhcCCCCcEEEEcC
Q 022672          158 ----TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       158 ----t~~li~~~~l~~mk~gailIN~a  180 (294)
                          ...-++.+.++.+|++++|..+.
T Consensus       257 ~~~~~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          257 LKVLTPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             HHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             HHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence                12447899999999999999885

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.16  E-value=0.031  Score=50.83  Aligned_cols=96  Identities=17%  Similarity=0.105  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccc-cCCHH---HHh----
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMD---EVL----  142 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~---ell----  142 (294)
                      .|++|.|+|.|.+|...++.+ +.+|++|++.+++.... +. ....       +.... .... ....+   +..    
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~-~~-~~~l-------Ga~~~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARSPRRL-EV-AKNC-------GADVTLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HH-HHHT-------TCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEcCCHHHH-HH-HHHh-------CCCEEEcCcccccHHHHHHHHhcccc
Confidence            478999999999999999974 78999999998765432 11 1111       11110 0000 11122   333    


Q ss_pred             -hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          143 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       143 -~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                       ...|+|+-++.. +.+    -...++.++++..+|.++-.
T Consensus       238 g~g~D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          238 GDLPNVTIDCSGN-EKC----ITIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SSCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCCCEEEECCCC-HHH----HHHHHHHHhcCCEEEEEecC
Confidence             258999998863 221    15667889999999988643

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.15  E-value=0.024  Score=50.40  Aligned_cols=38  Identities=24%  Similarity=0.127  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|+..++..
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~~~~   83 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYA-REGADVAINYLPA   83 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEECCGG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCc
Confidence            3689999999987 899999999984 7899999988763

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=96.14  E-value=0.02  Score=54.82  Aligned_cols=71  Identities=10%  Similarity=0.141  Sum_probs=48.5

Q ss_pred             CEEEEEcC----ChHHHHHHHHHhhc-CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cC
Q 022672           74 QTVGVIGA----GRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EA  145 (294)
Q Consensus        74 ktvGIIGl----G~IG~~vA~~L~~~-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~a  145 (294)
                      .+|||||+    |.||+..++.|.+. -+++++ ++|+.... .+.+.+.+       +...  ...+.+++++++  +.
T Consensus        40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~-a~~~a~~~-------g~~~--~~~~~d~~ell~~~~v  109 (479)
T 2nvw_A           40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKS-SLQTIEQL-------QLKH--ATGFDSLESFAQYKDI  109 (479)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHH-HHHHHHHT-------TCTT--CEEESCHHHHHHCTTC
T ss_pred             CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHH-HHHHHHHc-------CCCc--ceeeCCHHHHhcCCCC
Confidence            58999999    99999999987433 478865 67877543 22222221       1111  124578999996  68


Q ss_pred             CEEEEccCC
Q 022672          146 DVISLHPVL  154 (294)
Q Consensus       146 DiV~l~~Pl  154 (294)
                      |+|++|+|.
T Consensus       110 D~V~I~tp~  118 (479)
T 2nvw_A          110 DMIVVSVKV  118 (479)
T ss_dssp             SEEEECSCH
T ss_pred             CEEEEcCCc
Confidence            999999993

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.14  E-value=0.0058  Score=52.33  Aligned_cols=71  Identities=20%  Similarity=0.231  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHh-hcCCCEEEE-EcCCch-hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CC
Q 022672           72 KGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--AD  146 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~-~~~g~~V~~-~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aD  146 (294)
                      ..++++|+|.|++|+.+++.+. ...|+++.+ +|..+. ..-            .....+..+...+++++++++  .|
T Consensus        83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG------------~~~i~GvpV~~~~dL~~~v~~~~Id  150 (212)
T 3keo_A           83 STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVG------------KTTEDGIPVYGISTINDHLIDSDIE  150 (212)
T ss_dssp             SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTT------------CBCTTCCBEEEGGGHHHHC-CCSCC
T ss_pred             CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccC------------ceeECCeEEeCHHHHHHHHHHcCCC
Confidence            3468999999999999998631 356888775 576554 310            000112333345788898874  89


Q ss_pred             EEEEccCC
Q 022672          147 VISLHPVL  154 (294)
Q Consensus       147 iV~l~~Pl  154 (294)
                      .+++++|.
T Consensus       151 ~vIIAvPs  158 (212)
T 3keo_A          151 TAILTVPS  158 (212)
T ss_dssp             EEEECSCG
T ss_pred             EEEEecCc
Confidence            99999993

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.13  E-value=0.003  Score=58.21  Aligned_cols=100  Identities=14%  Similarity=0.182  Sum_probs=52.0

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEc--CCchhHHHHHHhhhhhhhhh---cCCCCccccccCCHHHHhh-cCC
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYD--LYQATRLEKFVTAYGQFLKA---NGEQPVTWKRASSMDEVLR-EAD  146 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ell~-~aD  146 (294)
                      .+|||+| +|.||+.+++.|...-+++|.+..  +.....  .+.+.++.....   .+..+..+. ..+.+++++ ++|
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D   85 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGK--KYKDACYWFQDRDIPENIKDMVVI-PTDPKHEEFEDVD   85 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTS--BHHHHSCCCCSSCCCHHHHTCBCE-ESCTTSGGGTTCC
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccc--cHHHhcccccccccccCceeeEEE-eCCHHHHhcCCCC
Confidence            4899999 899999999987433357887663  221110  111101000000   000011111 124455556 899


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +|++|+|.. .+..+. .   ..++.|..+|+.+-
T Consensus        86 vV~~atp~~-~~~~~a-~---~~~~aG~~VId~s~  115 (354)
T 1ys4_A           86 IVFSALPSD-LAKKFE-P---EFAKEGKLIFSNAS  115 (354)
T ss_dssp             EEEECCCHH-HHHHHH-H---HHHHTTCEEEECCS
T ss_pred             EEEECCCch-HHHHHH-H---HHHHCCCEEEECCc
Confidence            999999832 222111 2   22356788888763

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.13  E-value=0.0047  Score=55.82  Aligned_cols=106  Identities=18%  Similarity=0.261  Sum_probs=59.6

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      +|+|||.|.+|..+|..++. .+. +|..+|...... +.............. .........+. +.+++||+|+++.+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~-~~l~el~L~Di~~~~~-~g~~~dl~~~~~~~~-~~~~i~~t~d~-~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMM-RGYDDLLLIARTPGKP-QGEALDLAHAAAELG-VDIRISGSNSY-EDMRGSDIVLVTAG   76 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-HTCSCEEEECSSTTHH-HHHHHHHHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CEEEECcCHHHHHHHHHHHh-CCCCEEEEEcCChhhH-HHHHHHHHHhhhhcC-CCeEEEECCCH-HHhCCCCEEEEeCC
Confidence            58999999999999988743 354 799999875432 221111111000001 11122222455 57899999999976


Q ss_pred             CCccccccc-------c----HHH---HhcCCCCcEEEEcCCCcccCH
Q 022672          154 LDKTTYHLI-------N----KER---LATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       154 lt~~t~~li-------~----~~~---l~~mk~gailIN~aRG~~vd~  187 (294)
                      . +...++-       |    ++.   +....|++++|+++-  .+|.
T Consensus        77 ~-~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~  121 (308)
T 2d4a_B           77 I-GRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN--PVDA  121 (308)
T ss_dssp             C-CCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHH
T ss_pred             C-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC--chHH
Confidence            4 3322220       1    111   222358999999854  4443

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.13  E-value=0.0075  Score=55.63  Aligned_cols=93  Identities=18%  Similarity=0.296  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHHhhcCCEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  148 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDiV  148 (294)
                      .|.+|.|+|.|.||...++. ++.+|++|++.+++..... . ...+       +.... + ...+   ++++....|+|
T Consensus       194 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~Vi~~~~~~~~~~-~-a~~l-------Ga~~v-i-~~~~~~~~~~~~~g~Dvv  261 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKL-AHAMGAHVVAFTTSEAKRE-A-AKAL-------GADEV-V-NSRNADEMAAHLKSFDFI  261 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCEEEEEESSGGGHH-H-HHHH-------TCSEE-E-ETTCHHHHHTTTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCHHHHH-H-HHHc-------CCcEE-e-ccccHHHHHHhhcCCCEE
Confidence            47899999999999999997 4789999999997765421 1 1111       11110 0 0111   22333568999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +-++.. +.+    -...++.|+++..+|.++.
T Consensus       262 id~~g~-~~~----~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          262 LNTVAA-PHN----LDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             EECCSS-CCC----HHHHHTTEEEEEEEEECCC
T ss_pred             EECCCC-HHH----HHHHHHHhccCCEEEEecc
Confidence            988863 211    2567788899999998864

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=96.13  E-value=0.15  Score=46.77  Aligned_cols=144  Identities=13%  Similarity=0.107  Sum_probs=84.8

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcC-ChHHHHHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA   89 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA   89 (294)
                      +.++..+|+|-|.-+....++  .+++=++.+.++.+                   .|..+.|++|++||= +++.++++
T Consensus       112 ~lA~~~~vPVINag~~~~HPt--QaLaDl~TI~E~~~-------------------~G~~l~glkva~vGD~~rva~Sl~  170 (355)
T 4a8p_A          112 DLANCATIPVINGMSDYNHPT--QELGDLCTMVEHLP-------------------EGKKLEDCKVVFVGDATQVCFSLG  170 (355)
T ss_dssp             HHHHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTCC-------------------TTCCGGGCEEEEESCCCHHHHHHH
T ss_pred             HHHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHhh-------------------cCCCCCCCEEEEECCCchhHHHHH
Confidence            445667899999876444443  22333333332210                   022488999999987 67888888


Q ss_pred             HHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc----CCCccc-------
Q 022672           90 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP----VLDKTT-------  158 (294)
Q Consensus        90 ~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~----Plt~~t-------  158 (294)
                      ..+ ..||++|....|..-...+.+.+...+.....+   ..+....+++ .++++|+|..-+    ....+.       
T Consensus       171 ~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~-av~~aDVVytd~w~smgq~~~~~~er~~~  245 (355)
T 4a8p_A          171 LIT-TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSG---GSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKV  245 (355)
T ss_dssp             HHH-HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHS---CEEEEECCGG-GGTTCSEEEECCSSEETTEECCHHHHHHH
T ss_pred             HHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEECCHH-HHcCCCEEEecccccCcchhhhhHHHHHH
Confidence            876 579999999877532111111110000001111   1233457888 999999998632    100110       


Q ss_pred             ---cccccHHHHhcCCCCcEEEEcC
Q 022672          159 ---YHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       159 ---~~li~~~~l~~mk~gailIN~a  180 (294)
                         ..-++.+.++.+|++++|..+.
T Consensus       246 ~~~~y~vt~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          246 FYPKYQVNQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             HTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             hccccccCHHHHHhcCCCcEEECCC
Confidence               1446888888889999999885

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=96.13  E-value=0.011  Score=54.12  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=26.1

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      +|||+|+|.||+.+.|.|...-.++|.+....
T Consensus         3 kVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~   34 (330)
T 1gad_O            3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (330)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            79999999999999998754457888776543

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.12  E-value=0.023  Score=52.08  Aligned_cols=95  Identities=17%  Similarity=0.141  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccc-cCCHHHHhh-----
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR-----  143 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~ell~-----  143 (294)
                      .|++|.|+|.|.+|...++. ++.+|+ +|++.+++..... . ...+       +.... .... ..++.+.+.     
T Consensus       190 ~g~~VlV~GaG~vG~~avql-a~~~Ga~~Vi~~~~~~~~~~-~-~~~l-------Ga~~vi~~~~~~~~~~~~v~~~~~~  259 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMG-CKVAGASRIIGVDINKDKFA-R-AKEF-------GATECINPQDFSKPIQEVLIEMTDG  259 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHHTCSEEEEECSCGGGHH-H-HHHH-------TCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHHHH-H-HHHc-------CCceEeccccccccHHHHHHHHhCC
Confidence            57899999999999999997 478999 8999987765421 1 1111       11111 0110 123444333     


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCC-cEEEEcCC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  181 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~g-ailIN~aR  181 (294)
                      ..|+|+-++.. +++    -...++.++++ ..+|.++-
T Consensus       260 g~D~vid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          260 GVDYSFECIGN-VKV----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCc-HHH----HHHHHHhhccCCcEEEEEec
Confidence            48999988863 222    25677889998 88888753

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.12  E-value=0.01  Score=53.54  Aligned_cols=67  Identities=10%  Similarity=-0.004  Sum_probs=46.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---------
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  142 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---------  142 (294)
                      .++||||+ |.||+..++.+ +..+.+++ ++|++....  .+..        ..   .....+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~~~--------~~---~~~~~~~~~~~ll~~~~~l~~~   69 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAI-KEVGGVLVASLDPATNVG--LVDS--------FF---PEAEFFTEPEAFEAYLEDLRDR   69 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GGGG--------TC---TTCEEESCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCChHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HHHh--------hC---CCCceeCCHHHHHHHhhhhccc
Confidence            58999999 68999999987 45688865 578775431  1100        00   0123457888888         


Q ss_pred             -hcCCEEEEccCC
Q 022672          143 -READVISLHPVL  154 (294)
Q Consensus       143 -~~aDiV~l~~Pl  154 (294)
                       .+.|+|++|+|.
T Consensus        70 ~~~vD~V~I~tP~   82 (312)
T 3o9z_A           70 GEGVDYLSIASPN   82 (312)
T ss_dssp             TCCCSEEEECSCG
T ss_pred             CCCCcEEEECCCc
Confidence             678999999993

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=96.10  E-value=0.032  Score=50.69  Aligned_cols=101  Identities=15%  Similarity=0.139  Sum_probs=59.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCC-------EEEEEcCC----chhHHHHHHhhhhhhhhhcC-CCCccccccCCHHH
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLY----QATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDE  140 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~-------~V~~~d~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~e  140 (294)
                      ++|.|+|. |.+|+.++..|+ ..|+       +|..+|..    ... .+.....    +.... ..........++.+
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~-~~~~~~~~~~~ev~l~Di~~~~~~~~-~~g~~~d----l~~~~~~~~~~i~~~~~~~~   79 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIA-NGDMLGKDQPVILQLLEIPNEKAQKA-LQGVMME----IDDCAFPLLAGMTAHADPMT   79 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHH-TTTTTCTTCCEEEEEECCSCHHHHHH-HHHHHHH----HHTTTCTTEEEEEEESSHHH
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCcCCCCCCEEEEEcCCCcccccc-chhhHHH----HhhhcccccCcEEEecCcHH
Confidence            58999998 999999999874 4554       89999987    321 1111110    11100 01112223467889


Q ss_pred             HhhcCCEEEEccCCCcccccc-------cc----HH---HHhcC-CCCcEEEEcCC
Q 022672          141 VLREADVISLHPVLDKTTYHL-------IN----KE---RLATM-KKEAILVNCSR  181 (294)
Q Consensus       141 ll~~aDiV~l~~Plt~~t~~l-------i~----~~---~l~~m-k~gailIN~aR  181 (294)
                      .+++||+|+.+...... .+.       .|    .+   .+... +|.++||+++-
T Consensus        80 al~~aD~Vi~~ag~~~~-~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           80 AFKDADVALLVGARPRG-PGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             HTTTCSEEEECCCCCCC-TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             HhCCCCEEEEeCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            99999999988753221 111       01    11   22333 47889999973

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=96.09  E-value=0.018  Score=54.35  Aligned_cols=74  Identities=18%  Similarity=0.240  Sum_probs=47.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccC----CHHHHhh--cCC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS----SMDEVLR--EAD  146 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~ell~--~aD  146 (294)
                      .+|||||+|.||+..++.|.+.-++++. ++|++.... +.+.+.    +...+...  ...+.    +++++++  +.|
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~-~~~a~~----~~~~g~~~--~~~~~~~~~~~~~ll~~~~vD   93 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMV-GRAQEI----LKKNGKKP--AKVFGNGNDDYKNMLKDKNID   93 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHH-HHHHHH----HHHTTCCC--CEEECSSTTTHHHHTTCTTCC
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HHHHHH----HHhcCCCC--CceeccCCCCHHHHhcCCCCC
Confidence            4799999999999999887433478865 678876532 222111    10111111  12234    8999997  589


Q ss_pred             EEEEccCC
Q 022672          147 VISLHPVL  154 (294)
Q Consensus       147 iV~l~~Pl  154 (294)
                      +|++++|.
T Consensus        94 ~V~i~tp~  101 (444)
T 2ixa_A           94 AVFVSSPW  101 (444)
T ss_dssp             EEEECCCG
T ss_pred             EEEEcCCc
Confidence            99999993

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=96.08  E-value=0.012  Score=55.65  Aligned_cols=71  Identities=11%  Similarity=0.105  Sum_probs=48.4

Q ss_pred             CEEEEEcC----ChHHHHHHHHHhhc-CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cC
Q 022672           74 QTVGVIGA----GRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EA  145 (294)
Q Consensus        74 ktvGIIGl----G~IG~~vA~~L~~~-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~a  145 (294)
                      .+|||||+    |.||+..++.|.+. -+++++ ++|++.... +.+.+.+       +..  ....+.+++++++  +.
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~a~~~-------g~~--~~~~~~~~~~ll~~~~v   90 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETS-IATIQRL-------KLS--NATAFPTLESFASSSTI   90 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHT-------TCT--TCEEESSHHHHHHCSSC
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHH-HHHHHHc-------CCC--cceeeCCHHHHhcCCCC
Confidence            57999999    99999999987433 378865 678776432 2222211       111  1124578999996  68


Q ss_pred             CEEEEccCC
Q 022672          146 DVISLHPVL  154 (294)
Q Consensus       146 DiV~l~~Pl  154 (294)
                      |+|++|+|.
T Consensus        91 D~V~i~tp~   99 (438)
T 3btv_A           91 DMIVIAIQV   99 (438)
T ss_dssp             SEEEECSCH
T ss_pred             CEEEEeCCc
Confidence            999999993

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.07  E-value=0.019  Score=54.46  Aligned_cols=119  Identities=13%  Similarity=0.141  Sum_probs=69.0

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch----------hHHHHHHhhhhhhhhhcCCCC-------c
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQP-------V  130 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~-------~  130 (294)
                      +.++.|+||.|=|+|++|+.+|+.| ...|++|++.+-+..          .......+.     .......       .
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L-~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~-----k~~~~g~v~~~~~~~  303 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKA-MEFGARVITASDSSGTVVDESGFTKEKLARLIEI-----KSSRDGRVADYAKEF  303 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHH-----HTSTTCCHHHHHHHH
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHH-HhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHH-----hcccCCccccccccC
Confidence            3579999999999999999999997 689999987542210          001111100     0000000       0


Q ss_pred             cccccCCHHHH-hhcCCEEEEccCCCccccccccHHHHhcCCCC--cEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          131 TWKRASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMKKE--AILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       131 ~~~~~~~l~el-l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~g--ailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +.... +-+++ -.+||+.+-|.     +.+.|+.+....++..  .++++-+.+.+-.+.  .+.|.+..|.
T Consensus       304 g~~~~-~~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~eA--~~iL~~rGIl  368 (450)
T 4fcc_A          304 GLVYL-EGQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIEA--TELFQQAGVL  368 (450)
T ss_dssp             TCEEE-ETCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHH--HHHHHHTTCE
T ss_pred             CcEEe-cCcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHHH--HHHHHHCCCE
Confidence            00000 11111 24689887765     4667888877777643  578888887764443  3556665554

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.06  E-value=0.011  Score=54.22  Aligned_cols=30  Identities=30%  Similarity=0.565  Sum_probs=24.5

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD  104 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d  104 (294)
                      +|||+|+|.||+.++|.|...-++++.+..
T Consensus         5 kVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            5 KIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            799999999999999987433478877654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.05  E-value=0.02  Score=53.31  Aligned_cols=97  Identities=15%  Similarity=0.191  Sum_probs=59.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------h
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------R  143 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~  143 (294)
                      -.|.+|.|+|.|.+|...++. ++.+|+ +|++.+++.... + +...+       +....-.....++.+.+      .
T Consensus       212 ~~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~-~-~~~~l-------Ga~~vi~~~~~~~~~~i~~~t~g~  281 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAI-LKHAGASKVILSEPSEVRR-N-LAKEL-------GADHVIDPTKENFVEAVLDYTNGL  281 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEECSCHHHH-H-HHHHH-------TCSEEECTTTSCHHHHHHHHTTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHH-H-HHHHc-------CCCEEEcCCCCCHHHHHHHHhCCC
Confidence            468899999999999999987 489999 999998776442 1 11111       11111001112333322      2


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcC----CCCcEEEEcCC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATM----KKEAILVNCSR  181 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~m----k~gailIN~aR  181 (294)
                      ..|+|+-++.....+.    ...++.+    +++..++.++-
T Consensus       282 g~D~vid~~g~~~~~~----~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          282 GAKLFLEATGVPQLVW----PQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CCSEEEECSSCHHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCEEEECCCCcHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence            5899999987321222    2333444    99999998864

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.05  E-value=0.014  Score=53.63  Aligned_cols=95  Identities=16%  Similarity=0.184  Sum_probs=52.7

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .+|||+| .|.||+.+.+.|...-.+++.+........ ..+...++. +  .+.....   ..++++ +.++|+|++|+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g-~~~~~~~~~-~--~g~~~~~---~~~~~~-~~~vDvV~~a~   76 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAG-EPVHFVHPN-L--RGRTNLK---FVPPEK-LEPADILVLAL   76 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTT-SBGGGTCGG-G--TTTCCCB---CBCGGG-CCCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhC-chhHHhCch-h--cCccccc---ccchhH-hcCCCEEEEcC
Confidence            5799999 799999999998533356877654432211 011110110 0  0101111   123444 47899999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |... +..+. .   +.++.|+.+|+.+-
T Consensus        77 g~~~-s~~~a-~---~~~~aG~~VId~Sa  100 (345)
T 2ozp_A           77 PHGV-FAREF-D---RYSALAPVLVDLSA  100 (345)
T ss_dssp             CTTH-HHHTH-H---HHHTTCSEEEECSS
T ss_pred             CcHH-HHHHH-H---HHHHCCCEEEEcCc
Confidence            9432 22221 1   22467888998864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.05  E-value=0.0092  Score=53.18  Aligned_cols=92  Identities=15%  Similarity=0.091  Sum_probs=58.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc-c-CCHHHHhhcCCEE
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-A-SSMDEVLREADVI  148 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~ell~~aDiV  148 (294)
                      .|++|.|+|. |.+|..+++.+ +.+|++|++.+++..... . .       ...+.... ... . .++.+.+...|+|
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~~-~-~-------~~~ga~~~-~~~~~~~~~~~~~~~~d~v  193 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVA-RAMGLRVLAAASRPEKLA-L-P-------LALGAEEA-ATYAEVPERAKAWGGLDLV  193 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSGGGSH-H-H-------HHTTCSEE-EEGGGHHHHHHHTTSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H-H-------HhcCCCEE-EECCcchhHHHHhcCceEE
Confidence            4789999998 99999999985 789999999998654321 1 1       11111111 111 0 1233334678998


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +- +..  +    .-...++.|+++..+|.++-
T Consensus       194 id-~g~--~----~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          194 LE-VRG--K----EVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             EE-CSC--T----THHHHHTTEEEEEEEEEC--
T ss_pred             EE-CCH--H----HHHHHHHhhccCCEEEEEeC
Confidence            88 653  2    12667788888888888743

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.04  E-value=0.018  Score=52.57  Aligned_cols=95  Identities=18%  Similarity=0.179  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcccccc----CCH-HHHh---
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA----SSM-DEVL---  142 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l-~ell---  142 (294)
                      .|.+|.|+|.|.+|...++. ++.+|+ +|++.+++.... + +...       .+.... +...    .++ +++.   
T Consensus       171 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~-~-~a~~-------lGa~~v-i~~~~~~~~~~~~~i~~~~  239 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLV-AKAMGAAQVVVTDLSATRL-S-KAKE-------IGADLV-LQISKESPQEIARKVEGQL  239 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEEESCHHHH-H-HHHH-------TTCSEE-EECSSCCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHH-H-HHHH-------hCCCEE-EcCcccccchHHHHHHHHh
Confidence            47899999999999999987 478999 999998765432 1 1111       121110 1100    111 1222   


Q ss_pred             -hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          143 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       143 -~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                       ...|+|+-++.. +.+    -...++.++++..+|.++-+
T Consensus       240 ~~g~D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          240 GCKPEVTIECTGA-EAS----IQAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             TSCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCCCEEEECCCC-hHH----HHHHHHHhcCCCEEEEEecC
Confidence             258999998863 221    15667889999999998743

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=96.03  E-value=0.039  Score=49.94  Aligned_cols=108  Identities=21%  Similarity=0.225  Sum_probs=64.2

Q ss_pred             CEEEEEc-CChHHHHHHHHHhh--cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcccccc--CCHHHHhhcCCEE
Q 022672           74 QTVGVIG-AGRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA--SSMDEVLREADVI  148 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~--~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~ell~~aDiV  148 (294)
                      ++|+||| .|.+|+++|..|+.  .+..++..+|.... ......+     +.. ..........  .+..+.+++||+|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~-~~G~a~D-----l~~-~~~~~~v~~~~~~~~~~~~~~aDiv   73 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVD-----LSH-IPTAVKIKGFSGEDATPALEGADVV   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTT-HHHHHHH-----HHT-SCSSEEEEEECSSCCHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCC-chhHHHH-----hhC-CCCCceEEEecCCCcHHHhCCCCEE
Confidence            4799999 89999999998754  36678999998752 1111111     111 1111112111  2456788999999


Q ss_pred             EEccCCCcccccc-----c--cH-------HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022672          149 SLHPVLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSRGPVIDEVALV  191 (294)
Q Consensus       149 ~l~~Plt~~t~~l-----i--~~-------~~l~~mk~gailIN~aRG~~vd~~aL~  191 (294)
                      +++.+. +...++     +  |.       +.+....|++++++++  ..+|.-..+
T Consensus        74 ii~ag~-~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           74 LISAGV-ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             EECCSC-SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             EEeCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence            998863 221221     1  11       1223346789999995  566655544

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.01  E-value=0.004  Score=55.46  Aligned_cols=39  Identities=18%  Similarity=0.172  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      ..+.|++|.|||.|.+|...++.| ...|++|+++++...
T Consensus         9 ~~l~~k~VLVVGgG~va~rka~~L-l~~Ga~VtViap~~~   47 (274)
T 1kyq_A            9 HQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLH   47 (274)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEEC
T ss_pred             EEcCCCEEEEECCcHHHHHHHHHH-HhCCCEEEEEcCCCC
Confidence            468999999999999999999998 689999999997654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.00  E-value=0.014  Score=53.55  Aligned_cols=94  Identities=14%  Similarity=0.064  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH----Hhh--cC
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLR--EA  145 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~--~a  145 (294)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++.... +. ...+       +....-.....++.+    +..  ..
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~-~~-~~~l-------Ga~~vi~~~~~~~~~~v~~~~~g~g~  258 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIA-KATGAEVIVTSSSREKL-DR-AFAL-------GADHGINRLEEDWVERVYALTGDRGA  258 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHH-HHTTCEEEEEESCHHHH-HH-HHHH-------TCSEEEETTTSCHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCchhH-HH-HHHc-------CCCEEEcCCcccHHHHHHHHhCCCCc
Confidence            588999999999999999875 78999999999875432 11 1111       111110011123322    222  57


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |+|+-++.  .++    -...++.++++..+|.++.
T Consensus       259 D~vid~~g--~~~----~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          259 DHILEIAG--GAG----LGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             EEEEEETT--SSC----HHHHHHHEEEEEEEEEECC
T ss_pred             eEEEECCC--hHH----HHHHHHHhhcCCEEEEEec
Confidence            88888876  221    2566777888888887753

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.00  E-value=0.023  Score=52.35  Aligned_cols=94  Identities=18%  Similarity=0.138  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHHhh-----
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  143 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  143 (294)
                      .|.+|.|+|.|.||...++. ++.+|+ +|++.+++.... + +..       ..+....-...  ..++.+.+.     
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~-a~~~Ga~~Vi~~~~~~~~~-~-~a~-------~lGa~~vi~~~~~~~~~~~~i~~~~~g  262 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEG-AKTAGASRIIGIDIDSKKY-E-TAK-------KFGVNEFVNPKDHDKPIQEVIVDLTDG  262 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHH-HHHHTCSCEEEECSCTTHH-H-HHH-------TTTCCEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHHH-H-HHH-------HcCCcEEEccccCchhHHHHHHHhcCC
Confidence            57899999999999999987 478999 899999776542 1 111       11211110001  134444333     


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCC-cEEEEcC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCS  180 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~g-ailIN~a  180 (294)
                      ..|+|+-++.. +++    -...+..++++ ..++.++
T Consensus       263 g~D~vid~~g~-~~~----~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          263 GVDYSFECIGN-VSV----MRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECS
T ss_pred             CCCEEEECCCC-HHH----HHHHHHHhhccCCEEEEEc
Confidence            48999988862 222    25667888886 8888775

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.99  E-value=0.013  Score=56.11  Aligned_cols=99  Identities=16%  Similarity=0.252  Sum_probs=67.8

Q ss_pred             CcccCCCEEEEEcCC----------hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 022672           68 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  137 (294)
Q Consensus        68 g~~l~gktvGIIGlG----------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (294)
                      +..+.|++|+|+|+-          .=...+++.| ...|++|.+|||.....                 ..  .....+
T Consensus       348 ~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L-~~~g~~V~~~DP~~~~~-----------------~~--~~~~~~  407 (478)
T 3g79_A          348 GKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLC-LKAGASVMVHDPYVVNY-----------------PG--VEISDN  407 (478)
T ss_dssp             TCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHH-HHHTCEEEEECSSCCCB-----------------TT--BCEESC
T ss_pred             ccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHH-HHCCCEEEEECCCcccc-----------------cC--cceecC
Confidence            346899999999973          2257888887 68899999999976420                 00  112468


Q ss_pred             HHHHhhcCCEEEEccCCCccccccccH-HHHhcCC-CCcEEEEcCCCcccCHHHH
Q 022672          138 MDEVLREADVISLHPVLDKTTYHLINK-ERLATMK-KEAILVNCSRGPVIDEVAL  190 (294)
Q Consensus       138 l~ell~~aDiV~l~~Plt~~t~~li~~-~~l~~mk-~gailIN~aRG~~vd~~aL  190 (294)
                      +++.++++|.|+++++ -++-+. ++- ...+.|+ +..+++|+ |+ +.|.+.+
T Consensus       408 ~~~~~~~ad~vvi~t~-~~~f~~-~d~~~~~~~~~~~~~~i~D~-rn-~~~~~~~  458 (478)
T 3g79_A          408 LEEVVRNADAIVVLAG-HSAYSS-LKADWAKKVSAKANPVIIDG-RN-VIEPDEF  458 (478)
T ss_dssp             HHHHHTTCSEEEECSC-CHHHHS-CCHHHHHHHHCCSSCEEEES-SS-CSCHHHH
T ss_pred             HHHHHhcCCEEEEecC-CHHHHh-hhHHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence            8999999999999986 233332 343 3445677 47899995 54 3454443

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=95.98  E-value=0.013  Score=52.99  Aligned_cols=67  Identities=18%  Similarity=0.203  Sum_probs=46.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---------
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  142 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---------  142 (294)
                      .++||||+ |.||+..++.+ +..+.+++ ++|++....  .+..        ..   .....+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~~~--------~~---~~~~~~~~~~~ll~~~~~l~~~   69 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAI-KDTGNCLVSAYDINDSVG--IIDS--------IS---PQSEFFTEFEFFLDHASNLKRD   69 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GGGG--------TC---TTCEEESSHHHHHHHHHHHTTS
T ss_pred             eEEEEECCCcHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HHHh--------hC---CCCcEECCHHHHHHhhhhhhhc
Confidence            58999999 78999999987 45688865 578765431  1110        00   0123457888887         


Q ss_pred             --hcCCEEEEccCC
Q 022672          143 --READVISLHPVL  154 (294)
Q Consensus       143 --~~aDiV~l~~Pl  154 (294)
                        .+.|+|+++.|.
T Consensus        70 ~~~~vD~V~I~tP~   83 (318)
T 3oa2_A           70 SATALDYVSICSPN   83 (318)
T ss_dssp             TTTSCCEEEECSCG
T ss_pred             cCCCCcEEEECCCc
Confidence              578999999993

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.98  E-value=0.011  Score=53.58  Aligned_cols=94  Identities=15%  Similarity=0.081  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cC
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  145 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  145 (294)
                      .|++|.|+|.|.+|..+++.+ +.+|+ +|++.+++.... +.        +.. .....-.....++.+.+.     ..
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~-~~--------~~~-la~~v~~~~~~~~~~~~~~~~~~g~  232 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVV-RASGAGPILVSDPNPYRL-AF--------ARP-YADRLVNPLEEDLLEVVRRVTGSGV  232 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHHH-GG--------GTT-TCSEEECTTTSCHHHHHHHHHSSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HH--------HHH-hHHhccCcCccCHHHHHHHhcCCCC
Confidence            788999999999999999974 78999 899999875432 11        111 000000001124444333     57


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |+|+-++.. +++    -...+..|+++..+|.++-
T Consensus       233 D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          233 EVLLEFSGN-EAA----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EEEEECSCC-HHH----HHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCC-HHH----HHHHHHHHhcCCEEEEEec
Confidence            999888862 121    1566778888888888854

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.96  E-value=0.022  Score=51.78  Aligned_cols=103  Identities=22%  Similarity=0.250  Sum_probs=60.5

Q ss_pred             CCEEEEEc-CChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc---cCCHHHHhhcCC
Q 022672           73 GQTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREAD  146 (294)
Q Consensus        73 gktvGIIG-lG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aD  146 (294)
                      .++|+|+| .|.+|..++..|+ ..|  .+|..+|......  ...+     +.... .......   ..++++.+++||
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~-~~g~~~ev~l~Di~~~~~--~~~d-----L~~~~-~~~~v~~~~~t~d~~~al~gaD   78 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMK-MNPLVSVLHLYDVVNAPG--VTAD-----ISHMD-TGAVVRGFLGQQQLEAALTGMD   78 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHH-HCTTEEEEEEEESSSHHH--HHHH-----HHTSC-SSCEEEEEESHHHHHHHHTTCS
T ss_pred             CCEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEeCCCcHh--HHHH-----hhccc-ccceEEEEeCCCCHHHHcCCCC
Confidence            35899999 8999999999874 456  6899999765411  1100     11111 1111111   236778899999


Q ss_pred             EEEEccCCCcccccc-------cc----HHH---HhcCCCCcEEEEcCCCcccCH
Q 022672          147 VISLHPVLDKTTYHL-------IN----KER---LATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       147 iV~l~~Plt~~t~~l-------i~----~~~---l~~mk~gailIN~aRG~~vd~  187 (294)
                      +|+++.+.. ...+.       .|    ++.   +....|.+++++++  ..+|.
T Consensus        79 vVi~~ag~~-~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S--NPv~~  130 (326)
T 1smk_A           79 LIIVPAGVP-RKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS--NPVNS  130 (326)
T ss_dssp             EEEECCCCC-CCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             EEEEcCCcC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CchHH
Confidence            999998732 22221       11    111   22235788888874  45555

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.95  E-value=0.0074  Score=56.78  Aligned_cols=39  Identities=21%  Similarity=0.452  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .+.|++|+|+|-|.+|+.+++.+ +.+|++|+++|+.+..
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa-~~lG~~v~v~d~~~~~   70 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAA-QSMGYRVAVLDPDPAS   70 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCcC
Confidence            56899999999999999999985 7899999999987543

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.95  E-value=0.009  Score=54.71  Aligned_cols=69  Identities=12%  Similarity=0.142  Sum_probs=44.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhh--c-----CCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--
Q 022672           74 QTVGVIGAGRIGSAYARMMVE--G-----FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  143 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~--~-----~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  143 (294)
                      -+|||||+|.||+.-++.+..  .     .+++|. ++|+++.. .+.+.+.+       +.    ...+.+++++++  
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~-a~~~a~~~-------g~----~~~~~d~~~ll~~~   74 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEA-VRAAAGKL-------GW----STTETDWRTLLERD   74 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHH-HHHHHHHH-------TC----SEEESCHHHHTTCT
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHH-HHHHHHHc-------CC----CcccCCHHHHhcCC
Confidence            379999999999987766532  1     134655 57877643 23332222       11    123578999995  


Q ss_pred             cCCEEEEccCC
Q 022672          144 EADVISLHPVL  154 (294)
Q Consensus       144 ~aDiV~l~~Pl  154 (294)
                      +.|+|++|+|.
T Consensus        75 ~iDaV~I~tP~   85 (390)
T 4h3v_A           75 DVQLVDVCTPG   85 (390)
T ss_dssp             TCSEEEECSCG
T ss_pred             CCCEEEEeCCh
Confidence            47899999993

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.94  E-value=0.029  Score=53.02  Aligned_cols=86  Identities=13%  Similarity=0.220  Sum_probs=62.2

Q ss_pred             ccCCCEEEEEcCC----------hHHHHHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 022672           70 LLKGQTVGVIGAG----------RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  138 (294)
Q Consensus        70 ~l~gktvGIIGlG----------~IG~~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  138 (294)
                      .+.|++|+|+|+-          .-...+++.| ... |++|.+|||.....                      ....++
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L-~~~~g~~V~~~DP~~~~~----------------------~~~~~~  368 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELL-NQEPDIEVCAYDPHVELD----------------------FVEHDM  368 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHH-HHSTTCEEEEECSSCCCT----------------------TBCSTT
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHH-HhhcCCEEEEECCCcccc----------------------cccCCH
Confidence            4789999999983          2367888888 577 99999999975421                      123578


Q ss_pred             HHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          139 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       139 ~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      ++.++++|.|++++. -++-+. ++-+.++.|+ +.+++|+ |+
T Consensus       369 ~~~~~~ad~vvi~t~-~~~f~~-~d~~~~~~~~-~~~i~D~-r~  408 (431)
T 3ojo_A          369 SHAVKDASLVLILSD-HSEFKN-LSDSHFDKMK-HKVIFDT-KN  408 (431)
T ss_dssp             HHHHTTCSEEEECSC-CGGGTS-CCGGGGTTCS-SCEEEES-SC
T ss_pred             HHHHhCCCEEEEecC-CHHHhc-cCHHHHHhCC-CCEEEEC-CC
Confidence            899999999999987 333333 3444456676 6788886 44

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=95.94  E-value=0.029  Score=51.47  Aligned_cols=30  Identities=27%  Similarity=0.223  Sum_probs=24.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY  103 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~  103 (294)
                      .+|||+|+|.||+.+++.|...-++++.+.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV   32 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGV   32 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEE
Confidence            379999999999999998743336887765

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.92  E-value=0.034  Score=46.24  Aligned_cols=96  Identities=11%  Similarity=0.077  Sum_probs=57.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l  150 (294)
                      ++|.|.|. |.||+.+++.| ...|.+|++.+++...... .        . .+....  +.... +. +.+.++|+|+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~-~--------~-~~~~~~~~D~~d~-~~-~~~~~~d~vi~   67 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEA-KNRGHEVTAIVRNAGKITQ-T--------H-KDINILQKDIFDL-TL-SDLSDQNVVVD   67 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCSHHHHH-H--------C-SSSEEEECCGGGC-CH-HHHTTCSEEEE
T ss_pred             CeEEEEcCCchhHHHHHHHH-HhCCCEEEEEEcCchhhhh-c--------c-CCCeEEeccccCh-hh-hhhcCCCEEEE
Confidence            47899995 99999999998 4779999999987654211 0        0 000000  11111 12 67889999999


Q ss_pred             ccCCCcccccc---ccHHHHhcCCC--CcEEEEcCCC
Q 022672          151 HPVLDKTTYHL---INKERLATMKK--EAILVNCSRG  182 (294)
Q Consensus       151 ~~Plt~~t~~l---i~~~~l~~mk~--gailIN~aRG  182 (294)
                      +..........   .....+..|+.  ...+|.+|..
T Consensus        68 ~ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           68 AYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             CCCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             CCcCCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            88754332111   12345555543  3567776653

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=95.90  E-value=0.041  Score=51.78  Aligned_cols=119  Identities=17%  Similarity=0.273  Sum_probs=72.7

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCch-----hH-HHHHHhhhhhhhhhcCC-CCccccccCCHH
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQA-----TR-LEKFVTAYGQFLKANGE-QPVTWKRASSMD  139 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~-----~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~  139 (294)
                      |.++.|+||.|-|+|++|+.+|+.| ...|++|+ +.|.+..     .. .+...+ +   ....+. ...... ..+-+
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l-~e~GakVVavsD~~G~iyd~~GlD~~~l~~-~---~~~~g~i~~~~a~-~~~~~  289 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFM-HDAGAKVIGISDANGGLYNPDGLDIPYLLD-K---RDSFGMVTNLFTD-VITNE  289 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHH-HHHTCEEEEEECSSCEEECTTCCCHHHHHH-H---CCSSSCCGGGCSC-CBCHH
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCcEECCCCCCHHHHHH-H---HHHhCCCCCCCcE-EecCc
Confidence            4579999999999999999999987 57899986 4555410     00 111111 0   001110 000011 12345


Q ss_pred             HHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          140 EVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       140 ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +++ .+||+++-|..     .+.|+.+....++ -.+++-.+.+.+-  .+-.+.|.+..|.
T Consensus       290 ~i~~~~~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~t--~eA~~iL~~rGI~  343 (424)
T 3k92_A          290 ELLEKDCDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPTT--IDATKILNERGVL  343 (424)
T ss_dssp             HHHHSCCSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCBC--HHHHHHHHHTTCE
T ss_pred             cceeccccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCCC--HHHHHHHHHCCCE
Confidence            544 57999987764     5677777777774 4578888888864  3345667666653

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.90  E-value=0.011  Score=55.49  Aligned_cols=100  Identities=12%  Similarity=0.085  Sum_probs=57.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCC---CEEEEEcCCchhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhc--CC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLRE--AD  146 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~--aD  146 (294)
                      ++|+|+|.|.||+.+++.|+ ..|   .+|.++|++.... +.+.+.+.... .....  ........++++++++  +|
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~-~~g~~~~~V~v~~r~~~~~-~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMA-MNREVFSHITLASRTLSKC-QEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TCTTTCCEEEEEESCHHHH-HHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCceEEEEEECCHHHH-HHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            58999999999999999985 555   3899999876542 22222211100 00000  0111122457788888  89


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +|+.+.|...  ..-+-+   ..++.|..+++++-
T Consensus        79 vVin~ag~~~--~~~v~~---a~l~~g~~vvD~a~  108 (405)
T 4ina_A           79 IVLNIALPYQ--DLTIME---ACLRTGVPYLDTAN  108 (405)
T ss_dssp             EEEECSCGGG--HHHHHH---HHHHHTCCEEESSC
T ss_pred             EEEECCCccc--ChHHHH---HHHHhCCCEEEecC
Confidence            9999987321  111111   22345666776643

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=95.90  E-value=0.031  Score=52.64  Aligned_cols=117  Identities=18%  Similarity=0.218  Sum_probs=65.5

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCc--------------hhHHHHHHhhhhhhhhhcCCCCc-c
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ--------------ATRLEKFVTAYGQFLKANGEQPV-T  131 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~  131 (294)
                      |.++.|++|.|.|+|++|+.+|+.| ...|++|++ .|.+.              .....+..+..+. +     ... +
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L-~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~-i-----~~~~~  279 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNI-ERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKT-L-----IGFPG  279 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHH-HHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCC-c-----ccCCC
Confidence            4578999999999999999999997 589999984 45551              0111111111110 0     000 0


Q ss_pred             ccccCCHHHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          132 WKRASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       132 ~~~~~~l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ... .+-++++ .+||+++-|..     .+.|+.+....++ ..+++-.+-+.+- .+ -.+.|++..+.
T Consensus       280 a~~-i~~~~~~~~~~DIliP~A~-----~n~i~~~~A~~l~-ak~VvEgAN~P~t-~e-a~~il~~~GI~  340 (421)
T 2yfq_A          280 AER-ITDEEFWTKEYDIIVPAAL-----ENVITGERAKTIN-AKLVCEAANGPTT-PE-GDKVLTERGIN  340 (421)
T ss_dssp             ----------------CEEECSC-----SSCSCHHHHTTCC-CSEEECCSSSCSC-HH-HHHHHHHHTCE
T ss_pred             ceE-eCccchhcCCccEEEEcCC-----cCcCCcccHHHcC-CeEEEeCCccccC-HH-HHHHHHHCCCE
Confidence            011 1223333 47999988864     5668888888784 6688888888874 32 33445554443

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.88  E-value=0.013  Score=53.85  Aligned_cols=95  Identities=11%  Similarity=0.056  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cC
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  145 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  145 (294)
                      .|++|.|+|.|.||...++. ++.+|+ +|++.+++.... +. ....       +....-.....++.+.+.     ..
T Consensus       190 ~g~~VlV~GaG~vG~~a~ql-ak~~Ga~~Vi~~~~~~~~~-~~-a~~l-------Ga~~vi~~~~~~~~~~~~~~~~gg~  259 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLA-AKVCGASIIIAVDIVESRL-EL-AKQL-------GATHVINSKTQDPVAAIKEITDGGV  259 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHH-HHHHTCSEEEEEESCHHHH-HH-HHHH-------TCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEECCCHHHH-HH-HHHc-------CCCEEecCCccCHHHHHHHhcCCCC
Confidence            57899999999999999987 478899 799998765432 11 1111       111110011123333222     47


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |+|+-++.. +++    -...++.++++..+|.++-
T Consensus       260 D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          260 NFALESTGS-PEI----LKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             EEEEECSCC-HHH----HHHHHHTEEEEEEEEECCC
T ss_pred             cEEEECCCC-HHH----HHHHHHHHhcCCEEEEeCC
Confidence            888888762 221    1566788888888888754

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.87  E-value=0.02  Score=52.10  Aligned_cols=95  Identities=14%  Similarity=0.163  Sum_probs=61.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC-ccccccCCHHHHhh-----c
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLR-----E  144 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~-----~  144 (294)
                      .|++|.|+|. |.||+.+++.+ +..|++|++.+++.... +. ....       +... .......++.+.+.     .
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~V~~~~~~~~~~-~~-~~~~-------g~~~~~d~~~~~~~~~~~~~~~~~~  238 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYA-KAMGYRVLGIDGGEGKE-EL-FRSI-------GGEVFIDFTKEKDIVGAVLKATDGG  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECSTTHH-HH-HHHT-------TCCEEEETTTCSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCcEEEEcCCHHHH-HH-HHHc-------CCceEEecCccHhHHHHHHHHhCCC
Confidence            5789999999 89999999985 78999999998765432 11 1111       1110 11111234554443     4


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|+|+.+.... +    .-...+..|+++..+|+++.
T Consensus       239 ~D~vi~~~g~~-~----~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          239 AHGVINVSVSE-A----AIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             EEEEEECSSCH-H----HHHHHTTSEEEEEEEEECCC
T ss_pred             CCEEEECCCcH-H----HHHHHHHHHhcCCEEEEEeC
Confidence            79998887621 1    12566788899999998864

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.86  E-value=0.014  Score=53.12  Aligned_cols=94  Identities=16%  Similarity=0.168  Sum_probs=58.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh----h--c
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----R--E  144 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~--~  144 (294)
                      .|.+|.|+|.|.||...++. ++..|+ +|++.+++.... + +...+       +....-.....++.+-+    .  .
T Consensus       166 ~g~~VlV~GaG~vG~~a~ql-a~~~Ga~~Vi~~~~~~~~~-~-~~~~l-------Ga~~vi~~~~~~~~~~v~~~t~g~g  235 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAG-ANHLGAGRIFAVGSRKHCC-D-IALEY-------GATDIINYKNGDIVEQILKATDGKG  235 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHH-HHTTTCSSEEEECCCHHHH-H-HHHHH-------TCCEEECGGGSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCcEEEEECCCHHHH-H-HHHHh-------CCceEEcCCCcCHHHHHHHHcCCCC
Confidence            57899999999999999987 489999 799999876432 1 11111       11111001112333222    1  4


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .|+|+-++.. +++    -...++.++++..++.++
T Consensus       236 ~D~v~d~~g~-~~~----~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          236 VDKVVIAGGD-VHT----FAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             EEEEEECSSC-TTH----HHHHHHHEEEEEEEEECC
T ss_pred             CCEEEECCCC-hHH----HHHHHHHHhcCCEEEEec
Confidence            7888887763 221    256677888888888775

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=95.83  E-value=0.016  Score=53.09  Aligned_cols=30  Identities=23%  Similarity=0.443  Sum_probs=23.6

Q ss_pred             EEEEEcCChHHHHHHHHHhhc--CCCEEEEEc
Q 022672           75 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYD  104 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~--~g~~V~~~d  104 (294)
                      +|||+|+|.||+.+.|.|...  -.+++.+.+
T Consensus         3 kVgInG~G~IGr~llR~l~~~~~p~~eivaIn   34 (337)
T 1rm4_O            3 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   34 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            799999999999999987433  356776543

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.82  E-value=0.056  Score=49.70  Aligned_cols=95  Identities=14%  Similarity=0.179  Sum_probs=57.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      -.+|||||. |.+|+.+.++|...-..++.......... ..+.+.+. ++.    .+..+.. .+.++++.++|++++|
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG-~~~~~~~p-~~~----~~l~~~~-~~~~~~~~~~Dvvf~a   85 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAG-KKLEEIFP-STL----ENSILSE-FDPEKVSKNCDVLFTA   85 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTT-SBHHHHCG-GGC----CCCBCBC-CCHHHHHHHCSEEEEC
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCccccc-CChHHhCh-hhc----cCceEEe-CCHHHhhcCCCEEEEC
Confidence            357999975 99999999998543356776654322111 11111111 011    1222222 2566666899999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +|...      .++....+ .|+.+|+.|-
T Consensus        86 lp~~~------s~~~~~~~-~g~~VIDlSs  108 (351)
T 1vkn_A           86 LPAGA------SYDLVREL-KGVKIIDLGA  108 (351)
T ss_dssp             CSTTH------HHHHHTTC-CSCEEEESSS
T ss_pred             CCcHH------HHHHHHHh-CCCEEEECCh
Confidence            99432      25555566 7999999984

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.82  E-value=0.035  Score=46.46  Aligned_cols=96  Identities=11%  Similarity=0.039  Sum_probs=56.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l  150 (294)
                      ++|.|.|. |.||+.+++.| ...|.+|++.+++...... ..        ..+....  +.... +. +.+.++|+|+.
T Consensus         1 MkilVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~-~~--------~~~~~~~~~D~~d~-~~-~~~~~~d~vi~   68 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEA-RRRGHEVLAVVRDPQKAAD-RL--------GATVATLVKEPLVL-TE-ADLDSVDAVVD   68 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHH-HT--------CTTSEEEECCGGGC-CH-HHHTTCSEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHH-HHCCCEEEEEEeccccccc-cc--------CCCceEEecccccc-cH-hhcccCCEEEE
Confidence            46899997 99999999998 4679999999987654221 10        0000000  11111 12 67889999998


Q ss_pred             ccCCC--ccc---cccccHHHHhcCCC-CcEEEEcCC
Q 022672          151 HPVLD--KTT---YHLINKERLATMKK-EAILVNCSR  181 (294)
Q Consensus       151 ~~Plt--~~t---~~li~~~~l~~mk~-gailIN~aR  181 (294)
                      +....  +..   .-.....++..|+. +..||++|.
T Consensus        69 ~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           69 ALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             CCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             CCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence            88642  110   00112345555542 456777754

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.81  E-value=0.013  Score=53.63  Aligned_cols=94  Identities=15%  Similarity=0.179  Sum_probs=61.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHHhhcCCEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  148 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDiV  148 (294)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++..... ....       ..+....  ....+   +.++....|+|
T Consensus       180 ~g~~VlV~GaG~vG~~a~qla-k~~Ga~Vi~~~~~~~~~~-~~~~-------~lGa~~v--i~~~~~~~~~~~~~g~D~v  248 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIA-KAMGHHVTVISSSNKKRE-EALQ-------DLGADDY--VIGSDQAKMSELADSLDYV  248 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSTTHHH-HHHT-------TSCCSCE--EETTCHHHHHHSTTTEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeCChHHHH-HHHH-------HcCCcee--eccccHHHHHHhcCCCCEE
Confidence            688999999999999999974 789999999998764421 1110       1121111  11112   23333468999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +-++... .+    -...++.++++..+|.++-
T Consensus       249 id~~g~~-~~----~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          249 IDTVPVH-HA----LEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             EECCCSC-CC----SHHHHTTEEEEEEEEECSC
T ss_pred             EECCCCh-HH----HHHHHHHhccCCEEEEeCC
Confidence            9888632 11    2566788899999998864

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.76  E-value=0.03  Score=49.05  Aligned_cols=37  Identities=19%  Similarity=0.271  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|+..|++
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~~~   43 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLA-EEGADIILFDIC   43 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHH-HCCCeEEEEccc
Confidence            3689999999987 789999999984 789999999876

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.75  E-value=0.027  Score=51.03  Aligned_cols=113  Identities=16%  Similarity=0.128  Sum_probs=66.2

Q ss_pred             CCEEEEEcCChHHHH-HHHHHhhcCCCEEEEEcCCchhH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEE
Q 022672           73 GQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVIS  149 (294)
Q Consensus        73 gktvGIIGlG~IG~~-vA~~L~~~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~  149 (294)
                      .|+|.|||.|.+|.+ +|+.| +..|++|.++|.+.... .+.        +...+   +.+..-.+.+++. .++|+|+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L-~~~G~~V~~~D~~~~~~~~~~--------L~~~g---i~v~~g~~~~~l~~~~~d~vV   71 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIA-KEAGFEVSGCDAKMYPPMSTQ--------LEALG---IDVYEGFDAAQLDEFKADVYV   71 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHH-HHTTCEEEEEESSCCTTHHHH--------HHHTT---CEEEESCCGGGGGSCCCSEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHH-HhCCCEEEEEcCCCCcHHHHH--------HHhCC---CEEECCCCHHHcCCCCCCEEE
Confidence            478999999999996 88886 68999999999865321 111        11112   1111112344555 5799998


Q ss_pred             EccCCCccc----------cccccH-HHHhc--CCCC-cEEEEcCCCcccCHHHHHHHHHcC
Q 022672          150 LHPVLDKTT----------YHLINK-ERLAT--MKKE-AILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       150 l~~Plt~~t----------~~li~~-~~l~~--mk~g-ailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      ...--.++.          ..++.+ +++..  +++. .+-|--+.|+.--..=+...|+..
T Consensus        72 ~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  133 (326)
T 3eag_A           72 IGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA  133 (326)
T ss_dssp             ECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             ECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            864322221          123332 33442  3332 344555678877776677777654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.75  E-value=0.014  Score=52.38  Aligned_cols=38  Identities=24%  Similarity=0.521  Sum_probs=31.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  107 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~  107 (294)
                      ..|++++|.|||+|.+|..+|+.|+ ..|+ ++..+|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La-~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLT-RCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCc
Confidence            4699999999999999999999985 5565 788888654

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=95.74  E-value=0.035  Score=48.29  Aligned_cols=39  Identities=15%  Similarity=0.236  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGlG---~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      +|.||++.|-|.+   .||+++|+.|+ ..|++|+..+++...
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la-~~Ga~Vvi~~r~~~~   44 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLD-QLGAKLVFTYRKERS   44 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHH-HTTCEEEEEESSGGG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            6899999999974   69999999984 789999999987643

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.72  E-value=0.02  Score=51.95  Aligned_cols=93  Identities=23%  Similarity=0.205  Sum_probs=59.4

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh----h--
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----R--  143 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~--  143 (294)
                      -.|++|.|+|. |.||..+++.+ +.+|++|++.+++.... +. ....       +........ .++.+.+    .  
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~~-~~~~-------ga~~v~~~~-~~~~~~v~~~~~~~  226 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIA-KGMGAKVIAVVNRTAAT-EF-VKSV-------GADIVLPLE-EGWAKAVREATGGA  226 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSGGGH-HH-HHHH-------TCSEEEESS-TTHHHHHHHHTTTS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH-HH-HHhc-------CCcEEecCc-hhHHHHHHHHhCCC
Confidence            35889999998 99999999985 78999999998866543 11 1111       111110011 2333322    1  


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ..|+|+-++.. +     .-...+..|+++..+|.++
T Consensus       227 g~Dvvid~~g~-~-----~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          227 GVDMVVDPIGG-P-----AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             CEEEEEESCC--------CHHHHHHTEEEEEEEEEC-
T ss_pred             CceEEEECCch-h-----HHHHHHHhhcCCCEEEEEE
Confidence            48888888763 1     2256778889998888885

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=95.71  E-value=0.016  Score=53.14  Aligned_cols=99  Identities=14%  Similarity=0.170  Sum_probs=53.9

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCc---hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+|+|+| .|.+|+.+.++|...-.+++.....+.   ... ..+.+.+. ++  .+.....+....+.+++++++|+|+
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saG-k~~~~~~p-~~--~~~~~~~v~~~~~~~~~~~~~Dvvf   80 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAG-KLISDLHP-QL--KGIVELPLQPMSDISEFSPGVDVVF   80 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTT-SBHHHHCG-GG--TTTCCCBEEEESSGGGTCTTCSEEE
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcC-CchHHhCc-cc--cCccceeEeccCCHHHHhcCCCEEE
Confidence            5799999 599999999988543566777654332   110 00000000 00  0111111111104455558999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +|+|.. .++.+. .   ..++.|+.+|+.|-
T Consensus        81 ~a~p~~-~s~~~~-~---~~~~~g~~vIDlSa  107 (337)
T 3dr3_A           81 LATAHE-VSHDLA-P---QFLEAGCVVFDLSG  107 (337)
T ss_dssp             ECSCHH-HHHHHH-H---HHHHTTCEEEECSS
T ss_pred             ECCChH-HHHHHH-H---HHHHCCCEEEEcCC
Confidence            999932 222221 1   22467899999874

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=95.69  E-value=0.015  Score=53.31  Aligned_cols=30  Identities=23%  Similarity=0.455  Sum_probs=24.4

Q ss_pred             EEEEEcCChHHHHHHHHHhhc--CCCEEEEEc
Q 022672           75 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYD  104 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~--~g~~V~~~d  104 (294)
                      +|||+|+|.||+.+.|.|...  -++++.+.+
T Consensus         4 kVgI~G~G~IGr~v~r~l~~~~~~~~evvaIn   35 (339)
T 3b1j_A            4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAIN   35 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSCCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            799999999999999987443  458887654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.67  E-value=0.017  Score=52.20  Aligned_cols=95  Identities=19%  Similarity=0.125  Sum_probs=60.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cC
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  145 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  145 (294)
                      .|++|.|+|. |.||..+++.+ +..|++|++.+++.... +....       ..+....-.....++.+.+.     ..
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~  219 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAGGAEKC-RFLVE-------ELGFDGAIDYKNEDLAAGLKRECPKGI  219 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHH-------TTCCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHH-------HcCCCEEEECCCHHHHHHHHHhcCCCc
Confidence            5889999999 99999999985 78999999999876432 11101       11111110011123333332     47


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |+|+-+...  +    .-...+..|+++..+|.++.
T Consensus       220 d~vi~~~g~--~----~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          220 DVFFDNVGG--E----ILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             EEEEESSCH--H----HHHHHHTTEEEEEEEEECCC
T ss_pred             eEEEECCCc--c----hHHHHHHHHhhCCEEEEEee
Confidence            888887752  1    22567788899999988854

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.67  E-value=0.019  Score=52.37  Aligned_cols=94  Identities=16%  Similarity=0.180  Sum_probs=60.6

Q ss_pred             CCCEEEEE-cCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cC
Q 022672           72 KGQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  145 (294)
Q Consensus        72 ~gktvGII-GlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  145 (294)
                      .|++|.|+ |.|.||..+++.+ +..|++|++.+++.... +. ....       +....-.....++.+.+.     ..
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~~-~~~l-------Ga~~~~~~~~~~~~~~~~~~~~~g~  236 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLA-RAFGAEVYATAGSTGKC-EA-CERL-------GAKRGINYRSEDFAAVIKAETGQGV  236 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HH-HHHH-------TCSEEEETTTSCHHHHHHHHHSSCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH-HH-HHhc-------CCCEEEeCCchHHHHHHHHHhCCCc
Confidence            57899999 6899999999985 78999999999876542 11 1111       111110011123333332     48


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |+|+-++..  +    .-...+..|+++..++.++.
T Consensus       237 Dvvid~~g~--~----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          237 DIILDMIGA--A----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             EEEEESCCG--G----GHHHHHHTEEEEEEEEECCC
T ss_pred             eEEEECCCH--H----HHHHHHHHhccCCEEEEEEe
Confidence            999888862  1    22567788899988888853

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.65  E-value=0.02  Score=50.92  Aligned_cols=39  Identities=15%  Similarity=0.215  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEcCC---hHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           69 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        69 ~~l~gktvGIIGlG---~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      ..+.||++.|.|.+   .||+++|+.|+ ..|++|+..+++..
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la-~~G~~V~~~~r~~~   67 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVC-AQGAEVALTYLSET   67 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHH-HCCCEEEEEeCChH
Confidence            46899999999985   89999999984 78999999988753

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.64  E-value=0.027  Score=50.75  Aligned_cols=94  Identities=19%  Similarity=0.162  Sum_probs=60.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC-ccccccCCHHHHhh-----c
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLR-----E  144 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~-----~  144 (294)
                      .|+++.|.|. |.||..+++.+ +..|++|++.+++.... +.. ...       +... .......++.+.+.     .
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~-~~~-~~~-------g~~~~~d~~~~~~~~~~~~~~~~~~  214 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKI-AYL-KQI-------GFDAAFNYKTVNSLEEALKKASPDG  214 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHH-HHT-------TCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEecCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH-Hhc-------CCcEEEecCCHHHHHHHHHHHhCCC
Confidence            5889999998 99999999986 78999999999865432 211 111       1110 01111134444332     4


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|+++.+...  .+    -...+..++++..+|.++-
T Consensus       215 ~d~vi~~~g~--~~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          215 YDCYFDNVGG--EF----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             EEEEEESSCH--HH----HHHHHTTEEEEEEEEECCC
T ss_pred             CeEEEECCCh--HH----HHHHHHHHhcCCEEEEEec
Confidence            7888888752  11    2567788889888888853

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=95.63  E-value=0.12  Score=46.53  Aligned_cols=101  Identities=16%  Similarity=0.293  Sum_probs=63.1

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           70 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        70 ~l~gktvGIIGl---G~IG~~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      .+.|++|++||=   |++.++++..+ ..| |++|....|..-...+.+.+.    +...+   ..+....+++|.++++
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~-~~~~G~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~eav~~a  219 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYAL-SLFENVEMYFVSPKELRLPKDIIED----LKAKN---IKFYEKESLDDLDDDI  219 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHHH----HHHTT---CCEEEESCGGGCCTTC
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHH-HhcCCCEEEEECCcccccCHHHHHH----HHHcC---CEEEEEcCHHHHhcCC
Confidence            478999999998   48999999986 589 999999887532111111111    11111   2233457899999999


Q ss_pred             CEEEEccCCCc-----cc------cccccHHHHhcCCCCcEEEEcC
Q 022672          146 DVISLHPVLDK-----TT------YHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       146 DiV~l~~Plt~-----~t------~~li~~~~l~~mk~gailIN~a  180 (294)
                      |+|....--.+     +.      ..-++.+.++.  ++++|..+.
T Consensus       220 Dvvy~~~~q~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~l  263 (306)
T 4ekn_B          220 DVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHPL  263 (306)
T ss_dssp             SEEEECCCCGGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECCS
T ss_pred             CEEEeCCcccccCCCHHHHHHhccCcEECHHHHcC--CCCEEECCC
Confidence            99986432100     00      13356666665  677777663

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.63  E-value=0.072  Score=50.96  Aligned_cols=109  Identities=12%  Similarity=0.072  Sum_probs=67.4

Q ss_pred             CcccCCCEEEEEcCC----------hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhh---hhhcCCCCccccc
Q 022672           68 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKANGEQPVTWKR  134 (294)
Q Consensus        68 g~~l~gktvGIIGlG----------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  134 (294)
                      +..+.|++|+|+|+-          .=...+++.| ...|++|.+|||........   .++..   +.... .  ....
T Consensus       323 ~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~~~~~~~~~~~~-~--~~~~  395 (478)
T 2y0c_A          323 GEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAEL-LSRGARIAAYDPVAQEEARR---VIALDLADHPSWL-E--RLSF  395 (478)
T ss_dssp             CSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECTTTHHHHHH---HHHHHTTTCHHHH-T--TEEE
T ss_pred             cccCCCCEEEEEecccCCCCCccccChHHHHHHHH-HHCCCEEEEECCCccHHHHH---hhccccccccccc-c--ceee
Confidence            346899999999983          2456788887 68999999999986432111   11100   00000 0  1223


Q ss_pred             cCCHHHHhhcCCEEEEccCCCccccccccHHH-HhcCCCCcEEEEcCCCcccCHH
Q 022672          135 ASSMDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCSRGPVIDEV  188 (294)
Q Consensus       135 ~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~-l~~mk~gailIN~aRG~~vd~~  188 (294)
                      ..++++.++++|.|+++..- ++-+. ++-+. .+.|+ ..+++|+ |+ +.|.+
T Consensus       396 ~~~~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~  445 (478)
T 2y0c_A          396 VDDEAQAARDADALVIVTEW-KIFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPE  445 (478)
T ss_dssp             CSSHHHHTTTCSEEEECSCC-GGGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHH
T ss_pred             cCCHHHHHhCCCEEEEecCC-hHhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHH
Confidence            46788999999999999873 33333 34444 45565 4788887 44 34544

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=95.61  E-value=0.016  Score=53.92  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=24.8

Q ss_pred             EEEEEcCChHHHHHHHHHhhc--CCCEEEEEcC
Q 022672           75 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  105 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~--~g~~V~~~d~  105 (294)
                      +|||+|+|.||+.+.|.|...  -+++|.+.+.
T Consensus         4 kVgInGfGrIGr~vlR~l~~~~~~~veIVaInd   36 (380)
T 2d2i_A            4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN   36 (380)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHhcCCCCCEEEEEEec
Confidence            799999999999999987433  4588877543

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=95.61  E-value=0.097  Score=48.09  Aligned_cols=110  Identities=13%  Similarity=0.132  Sum_probs=66.8

Q ss_pred             cccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           69 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        69 ~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      ..|.|++|++||=+ ++.++++..+ ..||++|.+..|..-...+.+.+...+ ..........+....+++|.++++|+
T Consensus       184 ~~l~glkva~vGD~~nva~Sl~~~l-~~lG~~v~~~~P~~~~~~~~i~~~~~~-~a~~~~~g~~~~~~~d~~eav~~aDV  261 (353)
T 3sds_A          184 LGLEGLKIAWVGDANNVLFDLAIAA-TKMGVNVAVATPRGYEIPSHIVELIQK-AREGVQSPGNLTQTTVPEVAVKDADV  261 (353)
T ss_dssp             CSCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHH-HHTTCSSCCCEEEESCHHHHTTTCSE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHH-hhhhccCCCeEEEECCHHHHhcCCCE
Confidence            35899999999975 5677777765 579999999887532111111110000 00000111223445799999999999


Q ss_pred             EEEcc--CCCcc----------ccccccHHHHhc--CCCCcEEEEcC
Q 022672          148 ISLHP--VLDKT----------TYHLINKERLAT--MKKEAILVNCS  180 (294)
Q Consensus       148 V~l~~--Plt~~----------t~~li~~~~l~~--mk~gailIN~a  180 (294)
                      |..-.  +...+          ....++.+.++.  +|++++|..+.
T Consensus       262 vytd~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          262 IVTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             EEECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             EEeCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            97643  21111          123578888888  89999998874

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.60  E-value=0.023  Score=51.24  Aligned_cols=94  Identities=15%  Similarity=0.151  Sum_probs=59.2

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------h
Q 022672           71 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------R  143 (294)
Q Consensus        71 l~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~  143 (294)
                      -.|++|.|+| .|.||..+++.+ +..|++|++.+++.... + +...+       +....-.....++.+.+      .
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~-~~~~~-------ga~~~~~~~~~~~~~~~~~~~~~~  216 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLL-KMKGAHTIAVASTDEKL-K-IAKEY-------GAEYLINASKEDILRQVLKFTNGK  216 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSHHHH-H-HHHHT-------TCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HHHHc-------CCcEEEeCCCchHHHHHHHHhCCC
Confidence            3588999999 899999999985 78999999999865432 1 11111       11111001112333222      2


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ..|+|+-++..  +    .-...+..++++..+|.++
T Consensus       217 g~D~vid~~g~--~----~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          217 GVDASFDSVGK--D----TFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             CEEEEEECCGG--G----GHHHHHHHEEEEEEEEECC
T ss_pred             CceEEEECCCh--H----HHHHHHHHhccCCEEEEEc
Confidence            47888888762  1    1256677888888888875

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.59  E-value=0.012  Score=51.49  Aligned_cols=38  Identities=21%  Similarity=0.273  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIGl---G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .+.||++.|.|.   |.||+++|+.|+ ..|++|+..+++..
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~-~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCF-NQGATLAFTYLNES   43 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHH-TTTCEEEEEESSTT
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            377999999997   699999999984 77999999988753

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.57  E-value=0.009  Score=53.08  Aligned_cols=73  Identities=22%  Similarity=0.207  Sum_probs=44.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+|+|+|+ |.||+.+++.+...-++++. ++|+........   ..++   ..+....+.....++++++.++|+|+-+
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~---d~~~---~~g~~~~~v~~~~dl~~~l~~~DvVIDf   79 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DAGE---LAGAGKTGVTVQSSLDAVKDDFDVFIDF   79 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CTTC---SSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhh---hHHH---HcCCCcCCceecCCHHHHhcCCCEEEEc
Confidence            48999998 99999999986545688876 667654210000   0000   0011111222346788888899999944


Q ss_pred             c
Q 022672          152 P  152 (294)
Q Consensus       152 ~  152 (294)
                      .
T Consensus        80 t   80 (273)
T 1dih_A           80 T   80 (273)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=95.56  E-value=0.019  Score=52.67  Aligned_cols=31  Identities=26%  Similarity=0.434  Sum_probs=25.0

Q ss_pred             EEEEEcCChHHHHHHHHHhh---cCCCEEEEEcC
Q 022672           75 TVGVIGAGRIGSAYARMMVE---GFKMNLIYYDL  105 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~---~~g~~V~~~d~  105 (294)
                      +|||+|+|.||+.+.|.|..   .-++++.+.+.
T Consensus         4 kVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~   37 (339)
T 2x5j_O            4 RVAINGFGRIGRNVVRALYESGRRAEITVVAINE   37 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeC
Confidence            79999999999999998743   23788876654

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=95.55  E-value=0.034  Score=48.85  Aligned_cols=40  Identities=23%  Similarity=0.152  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|++.+++...
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~   65 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELG-RRGCKVIVNYANSTE   65 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCchH
Confidence            3578999999986 899999999984 679999998887543

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=95.55  E-value=0.03  Score=49.27  Aligned_cols=38  Identities=18%  Similarity=0.181  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIGl---G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .+.||++.|.|.   |.||+++|+.|+ ..|++|+..+++..
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~   58 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFH-REGAQLAFTYATPK   58 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            488999999998   599999999984 67999999988753

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.52  E-value=0.12  Score=48.59  Aligned_cols=114  Identities=20%  Similarity=0.206  Sum_probs=71.0

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCC---------chhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASS  137 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (294)
                      |.++.|++|.|.|+|++|+.+|+.| ...|++|+ +.|.+         ......+..+..+      .....   .. +
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L-~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g------~v~~~---~~-~  281 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHA-ERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATG------SLPRL---DL-A  281 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHS------SCSCC---CB-C
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhC------Cccee---ec-c
Confidence            4578999999999999999999997 57899998 45552         1111111111110      00000   00 1


Q ss_pred             HHHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          138 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       138 l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      -++++ ..||+++-|..     .+.|+.+....++- .+++..+.+.+- .+ -.+.|.+..|.
T Consensus       282 ~~e~~~~~~DVliP~A~-----~n~i~~~~A~~l~a-k~V~EgAN~p~t-~~-A~~~L~~~Gi~  337 (419)
T 3aoe_E          282 PEEVFGLEAEVLVLAAR-----EGALDGDRARQVQA-QAVVEVANFGLN-PE-AEAYLLGKGAL  337 (419)
T ss_dssp             TTTGGGSSCSEEEECSC-----TTCBCHHHHTTCCC-SEEEECSTTCBC-HH-HHHHHHHHTCE
T ss_pred             chhhhccCceEEEeccc-----ccccccchHhhCCc-eEEEECCCCcCC-HH-HHHHHHHCCCE
Confidence            12322 47999988864     56677777777754 488999988864 33 33556665554

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=95.48  E-value=0.014  Score=52.96  Aligned_cols=71  Identities=15%  Similarity=0.115  Sum_probs=45.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l  150 (294)
                      .+|||||+|.+|+..++.+  .-++++++ +|++.....+.+.+.    ....+   .+...+.++++++++  .|+|++
T Consensus         3 ~rvgiiG~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~ll~~~~vD~V~I   73 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKA----ISEMN---IKPKKYNNWWEMLEKEKPDILVI   73 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHH----HHTTT---CCCEECSSHHHHHHHHCCSEEEE
T ss_pred             eEEEEEccchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHH----HHHcC---CCCcccCCHHHHhcCCCCCEEEE
Confidence            4799999999999776654  45788774 787652211221110    00111   112346799999975  899999


Q ss_pred             ccC
Q 022672          151 HPV  153 (294)
Q Consensus       151 ~~P  153 (294)
                      +.|
T Consensus        74 ~tp   76 (337)
T 3ip3_A           74 NTV   76 (337)
T ss_dssp             CSS
T ss_pred             eCC
Confidence            998

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.47  E-value=0.023  Score=51.18  Aligned_cols=94  Identities=13%  Similarity=0.087  Sum_probs=59.6

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------hc
Q 022672           72 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  144 (294)
Q Consensus        72 ~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  144 (294)
                      .|++|.|+| .|.||..+++.+ +..|++|++.+++.... +. ....       +....-.....++.+.+      ..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~~-~~~~-------Ga~~~~~~~~~~~~~~~~~~~~~~g  209 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWA-KALGAKLIGTVSSPEKA-AH-AKAL-------GAWETIDYSHEDVAKRVLELTDGKK  209 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSHHHH-HH-HHHH-------TCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HHHc-------CCCEEEeCCCccHHHHHHHHhCCCC
Confidence            588999999 799999999985 78999999999865432 11 1111       11111001112332222      25


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|+|+-++..  +    .-...+..++++..+|.++.
T Consensus       210 ~Dvvid~~g~--~----~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          210 CPVVYDGVGQ--D----TWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             EEEEEESSCG--G----GHHHHHTTEEEEEEEEECCC
T ss_pred             ceEEEECCCh--H----HHHHHHHHhcCCCEEEEEec
Confidence            7888888762  1    12567788899988888853

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.47  E-value=0.034  Score=50.14  Aligned_cols=79  Identities=19%  Similarity=0.116  Sum_probs=46.7

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH--HHhhhhhhhhhcCCCC--ccccccCCHHHHhh--
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--VTWKRASSMDEVLR--  143 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~--  143 (294)
                      ...++|.|.|. |.||+.+++.| ...|.+|++.++......+.  ....    +...+...  .+.....++.++++  
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~~~~~~~----l~~~~v~~~~~Dl~d~~~l~~~~~~~   82 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATAS-LDAHRPTYILARPGPRSPSKAKIFKA----LEDKGAIIVYGLINEQEAMEKILKEH   82 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHH-HHTTCCEEEEECSSCCCHHHHHHHHH----HHHTTCEEEECCTTCHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcHHHHHHHHHH-HHCCCCEEEEECCCCCChhHHHHHHH----HHhCCcEEEEeecCCHHHHHHHHhhC
Confidence            34678999998 99999999998 46789999998865211110  0000    00111000  01112345677888  


Q ss_pred             cCCEEEEccCC
Q 022672          144 EADVISLHPVL  154 (294)
Q Consensus       144 ~aDiV~l~~Pl  154 (294)
                      ++|+|+.+...
T Consensus        83 ~~d~Vi~~a~~   93 (346)
T 3i6i_A           83 EIDIVVSTVGG   93 (346)
T ss_dssp             TCCEEEECCCG
T ss_pred             CCCEEEECCch
Confidence            89998888763

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=95.44  E-value=0.054  Score=49.82  Aligned_cols=69  Identities=13%  Similarity=0.145  Sum_probs=44.3

Q ss_pred             CEEEEEc-CChHHHH-HH----HHHhhcCCCEE----------EEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 022672           74 QTVGVIG-AGRIGSA-YA----RMMVEGFKMNL----------IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  137 (294)
Q Consensus        74 ktvGIIG-lG~IG~~-vA----~~L~~~~g~~V----------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (294)
                      .+||||| +|.||+. .+    +.+...-+..+          .++|++.... +.+.+.+       +..    ..+.+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a-~~~a~~~-------~~~----~~~~~   74 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKV-EALAKRF-------NIA----RWTTD   74 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHH-HHHHHHT-------TCC----CEESC
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHH-HHHHHHh-------CCC----cccCC
Confidence            3799999 9999997 55    55433333332          3788876543 2222211       111    23579


Q ss_pred             HHHHhhc--CCEEEEccCC
Q 022672          138 MDEVLRE--ADVISLHPVL  154 (294)
Q Consensus       138 l~ell~~--aDiV~l~~Pl  154 (294)
                      +++++++  .|+|+++.|.
T Consensus        75 ~~~ll~~~~iD~V~i~tp~   93 (383)
T 3oqb_A           75 LDAALADKNDTMFFDAATT   93 (383)
T ss_dssp             HHHHHHCSSCCEEEECSCS
T ss_pred             HHHHhcCCCCCEEEECCCc
Confidence            9999975  8999999994

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=95.41  E-value=0.026  Score=49.00  Aligned_cols=36  Identities=25%  Similarity=0.159  Sum_probs=30.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      .+.||++.|.|. |.||+++|+.|+ ..|++|+..+++
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~~~   41 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFA-QEGANVVLTYNG   41 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCC
Confidence            588999999987 789999999984 779999887433

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.38  E-value=0.013  Score=53.15  Aligned_cols=94  Identities=13%  Similarity=0.122  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcC--CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccc-cCCHHHHhh--cC
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR--EA  145 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~ell~--~a  145 (294)
                      .|++|.|+|.|.||...++.+ +.+  |++|++.+++.... +. ....       +.... .... .+..+++-.  ..
T Consensus       170 ~g~~VlV~GaG~vG~~aiqla-k~~~~Ga~Vi~~~~~~~~~-~~-~~~l-------Ga~~vi~~~~~~~~~~~~~~g~g~  239 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQIL-KALMKNITIVGISRSKKHR-DF-ALEL-------GADYVSEMKDAESLINKLTDGLGA  239 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHH-HHHCTTCEEEEECSCHHHH-HH-HHHH-------TCSEEECHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHhcCCCEEEEEeCCHHHH-HH-HHHh-------CCCEEeccccchHHHHHhhcCCCc
Confidence            688999999999999999974 788  99999999865432 11 1111       11110 0000 000122221  57


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      |+|+-++.. +++    -...++.++++..+|.++
T Consensus       240 D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          240 SIAIDLVGT-EET----TYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             EEEEESSCC-HHH----HHHHHHHEEEEEEEEECC
T ss_pred             cEEEECCCC-hHH----HHHHHHHhhcCCEEEEeC
Confidence            888888762 211    155667788888888775

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.38  E-value=0.061  Score=44.07  Aligned_cols=73  Identities=10%  Similarity=0.021  Sum_probs=47.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhcCCEEE
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~aDiV~  149 (294)
                      +++|.|.|. |.||+.+++.| ...|.+|++.+++......         ....+..  ..+.....+++++++++|+|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l-~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi   72 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPS---------EGPRPAHVVVGDVLQAADVDKTVAGQDAVI   72 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCGGGSCS---------SSCCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHH-HHCCCeEEEEEeChhhccc---------ccCCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence            478999998 99999999998 4678999999987643210         0000000  001111235667888999999


Q ss_pred             EccCCC
Q 022672          150 LHPVLD  155 (294)
Q Consensus       150 l~~Plt  155 (294)
                      .+....
T Consensus        73 ~~a~~~   78 (206)
T 1hdo_A           73 VLLGTR   78 (206)
T ss_dssp             ECCCCT
T ss_pred             ECccCC
Confidence            887643

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.37  E-value=0.028  Score=50.52  Aligned_cols=94  Identities=13%  Similarity=0.100  Sum_probs=57.2

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHH-HHh-----hc
Q 022672           72 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVL-----RE  144 (294)
Q Consensus        72 ~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell-----~~  144 (294)
                      .|++|.|+| .|.||..+++.+ +..|++|++.+++.... +.. ...       +..........++. ++.     ..
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a-~~~G~~V~~~~~~~~~~-~~~-~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~  209 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWA-KALGAKLIGTVGTAQKA-QSA-LKA-------GAWQVINYREEDLVERLKEITGGKK  209 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHHTCEEEEEESSHHHH-HHH-HHH-------TCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH-HHH-HHc-------CCCEEEECCCccHHHHHHHHhCCCC
Confidence            588999999 799999999986 78899999999875432 111 111       11100000011222 222     14


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|+++.+..  .++    -...+..|+++..+|.++.
T Consensus       210 ~D~vi~~~g--~~~----~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          210 VRVVYDSVG--RDT----WERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             EEEEEECSC--GGG----HHHHHHTEEEEEEEEECCC
T ss_pred             ceEEEECCc--hHH----HHHHHHHhcCCCEEEEEec
Confidence            688887775  222    2566777888888887753

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.37  E-value=0.03  Score=46.93  Aligned_cols=73  Identities=12%  Similarity=0.098  Sum_probs=47.4

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV~l~  151 (294)
                      ++|.|.| .|.||+.+++.| ...|.+|++.+++.......  ..    +.   ....+... ..++.++++++|+|+.+
T Consensus         1 M~ilItGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~--~~----~~---~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSL-STTDYQIYAGARKVEQVPQY--NN----VK---AVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHH-TTSSCEEEEEESSGGGSCCC--TT----EE---EEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCccchhhc--CC----ce---EEEecccCCHHHHHHHHcCCCEEEEC
Confidence            3789999 699999999998 57799999999876532100  00    00   00001111 23566778899999988


Q ss_pred             cCCCc
Q 022672          152 PVLDK  156 (294)
Q Consensus       152 ~Plt~  156 (294)
                      .....
T Consensus        71 ag~~~   75 (219)
T 3dqp_A           71 SGSGG   75 (219)
T ss_dssp             CCCTT
T ss_pred             CcCCC
Confidence            87544

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=95.34  E-value=0.016  Score=53.72  Aligned_cols=67  Identities=18%  Similarity=0.207  Sum_probs=46.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcC--CCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGF--KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~--g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .+|||||+| +|+.-++.+ +..  ++++.+ +|+.... ...+.+.+       +     +..+.++++++.+.|++++
T Consensus         8 ~rv~VvG~G-~g~~h~~a~-~~~~~~~elvav~~~~~~~-a~~~a~~~-------g-----v~~~~~~~~l~~~~D~v~i   72 (372)
T 4gmf_A            8 QRVLIVGAK-FGEMYLNAF-MQPPEGLELVGLLAQGSAR-SRELAHAF-------G-----IPLYTSPEQITGMPDIACI   72 (372)
T ss_dssp             EEEEEECST-TTHHHHHTT-SSCCTTEEEEEEECCSSHH-HHHHHHHT-------T-----CCEESSGGGCCSCCSEEEE
T ss_pred             CEEEEEehH-HHHHHHHHH-HhCCCCeEEEEEECCCHHH-HHHHHHHh-------C-----CCEECCHHHHhcCCCEEEE
Confidence            579999999 799877765 343  678774 6776543 23332222       1     2345789999999999999


Q ss_pred             ccCCC
Q 022672          151 HPVLD  155 (294)
Q Consensus       151 ~~Plt  155 (294)
                      ++|..
T Consensus        73 ~~p~~   77 (372)
T 4gmf_A           73 VVRST   77 (372)
T ss_dssp             CCC--
T ss_pred             ECCCc
Confidence            99843

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.33  E-value=0.025  Score=51.89  Aligned_cols=94  Identities=15%  Similarity=0.088  Sum_probs=59.9

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cC
Q 022672           72 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  145 (294)
Q Consensus        72 ~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  145 (294)
                      .|++|.|+| .|.||..+++.+ +..|++|++.+++.... +. ..       ..+....-.....++.+.+.     ..
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a-~~~Ga~Vi~~~~~~~~~-~~-~~-------~~Ga~~~~~~~~~~~~~~~~~~~~~g~  232 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLS-KKAKCHVIGTCSSDEKS-AF-LK-------SLGCDRPINYKTEPVGTVLKQEYPEGV  232 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHH-HHTTCEEEEEESSHHHH-HH-HH-------HTTCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HhCCCEEEEEECCHHHH-HH-HH-------HcCCcEEEecCChhHHHHHHHhcCCCC
Confidence            578999999 799999999985 78999999999875432 11 11       11111110001123444332     47


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |+|+-++..  .    .-...++.|+++..+|.++-
T Consensus       233 D~vid~~g~--~----~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          233 DVVYESVGG--A----MFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             EEEEECSCT--H----HHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCH--H----HHHHHHHHHhcCCEEEEEeC
Confidence            888888762  1    22566788888888888864

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.33  E-value=0.09  Score=45.47  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=32.4

Q ss_pred             ccCCCEEEEEcC-Ch--HHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIGl-G~--IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      ++.||++.|.|. |.  ||+++|+.|+ ..|++|+..+++..
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~-~~G~~V~~~~r~~~   44 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLH-EAGARLIFTYAGER   44 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHH-HCCCEEEEecCchH
Confidence            588999999997 45  9999999984 77999999887653

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.32  E-value=0.018  Score=52.15  Aligned_cols=95  Identities=15%  Similarity=0.120  Sum_probs=58.8

Q ss_pred             cCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------h
Q 022672           71 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------R  143 (294)
Q Consensus        71 l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~  143 (294)
                      -.|++|.|+|.| .||..+++.+ +..|++|++.+++.... +. ....       +....-.....++.+.+      .
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~~-~~~l-------ga~~~~~~~~~~~~~~~~~~~~~~  212 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLS-QILNFRLIAVTRNNKHT-EE-LLRL-------GAAYVIDTSTAPLYETVMELTNGI  212 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSSTTH-HH-HHHH-------TCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH-HH-HHhC-------CCcEEEeCCcccHHHHHHHHhCCC
Confidence            357899999997 9999999875 78999999998776542 11 1111       11111001112333322      2


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      ..|+|+-++.. +.+     .+.+..++++..+|.++-
T Consensus       213 g~Dvvid~~g~-~~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          213 GADAAIDSIGG-PDG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             CEEEEEESSCH-HHH-----HHHHHTEEEEEEEEECCC
T ss_pred             CCcEEEECCCC-hhH-----HHHHHHhcCCCEEEEEee
Confidence            57888888762 221     344577889989888863

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.32  E-value=0.1  Score=49.62  Aligned_cols=107  Identities=11%  Similarity=0.074  Sum_probs=65.7

Q ss_pred             ccCCCEEEEEcCCh----------HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC--ccccccCC
Q 022672           70 LLKGQTVGVIGAGR----------IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASS  137 (294)
Q Consensus        70 ~l~gktvGIIGlG~----------IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  137 (294)
                      .+.|++|+|+|+--          -...+++.| ...|++|.+|||......  +...+. .........  .......+
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~  401 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYL-MDEGAHLHIYDPKVPREQ--IVVDLS-HPGVSEDDQVSRLVTISKD  401 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSSCHHH--HHHHHC-C------CHHHHHEEECSS
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHH-HHCCCEEEEEcCccCHHH--Hhhhhc-cccccccccccCceeecCC
Confidence            48999999999863          677888987 689999999999854321  000000 000000000  01223357


Q ss_pred             HHHHhhcCCEEEEccCCCccccccccHH-HHhcCCCCcEEEEcCCCc
Q 022672          138 MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGP  183 (294)
Q Consensus       138 l~ell~~aDiV~l~~Plt~~t~~li~~~-~l~~mk~gailIN~aRG~  183 (294)
                      ..+.++++|.|++++.- ++-+. ++-+ ....|+...+++++ |+-
T Consensus       402 ~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~~  445 (467)
T 2q3e_A          402 PYEACDGAHAVVICTEW-DMFKE-LDYERIHKKMLKPAFIFDG-RRV  445 (467)
T ss_dssp             HHHHHTTCSEEEECSCC-GGGGG-SCHHHHHHHSCSSCEEEES-SCT
T ss_pred             HHHHHhCCcEEEEecCC-hhhhc-CCHHHHHHhcCCCCEEEeC-CCc
Confidence            88899999999999873 34333 3443 44567776668876 543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.28  E-value=0.09  Score=46.86  Aligned_cols=109  Identities=13%  Similarity=0.105  Sum_probs=71.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+.|++|.|+|........++.| ...|.+|..+.-....        |         ...+.....++.+.++++|+|+
T Consensus         4 ~~~~mki~v~~~~~~~~~~~~~L-~~~g~~v~~~~~~~~~--------~---------~~~g~~~~~~~~~~~~~~d~ii   65 (300)
T 2rir_A            4 MLTGLKIAVIGGDARQLEIIRKL-TEQQADIYLVGFDQLD--------H---------GFTGAVKCNIDEIPFQQIDSII   65 (300)
T ss_dssp             CCCSCEEEEESBCHHHHHHHHHH-HHTTCEEEEESCTTSS--------C---------CCTTEEECCGGGSCGGGCSEEE
T ss_pred             cccCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeccccc--------c---------ccccceeccchHHHHhcCCEEE
Confidence            36788999999999999999988 5789998766321110        0         0011122345677789999998


Q ss_pred             EccCCCc----------cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 022672          150 LHPVLDK----------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  201 (294)
Q Consensus       150 l~~Plt~----------~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g  201 (294)
                      .-.|...          .+...++++.++.++++.+++ +   + +|..++.+++.+..+.-
T Consensus        66 ~~~~~~~~~~~i~s~~a~~~~~~~~~~l~~~~~l~~i~-~---g-~~~~d~~~~~~~~gi~v  122 (300)
T 2rir_A           66 LPVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIF-S---G-ISNAYLENIAAQAKRKL  122 (300)
T ss_dssp             CCSSCEETTTEECBSSCSSCEECCHHHHHTSCTTCEEE-E---S-SCCHHHHHHHHHTTCCE
T ss_pred             eccccccCCcccccccccCCccchHHHHhhcCCCCEEE-E---e-cCCHHHHHHHHHCCCEE
Confidence            7444321          233347899999999998877 3   2 26677666666655554

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=95.22  E-value=0.038  Score=49.05  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcC-Ch--HHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           70 LLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        70 ~l~gktvGIIGl-G~--IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      .+.||++.|.|. |.  ||+++|+.|+ ..|++|+..+++.
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la-~~G~~V~~~~r~~   67 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAR-EAGAELAFTYQGD   67 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHH-HTTCEEEEEECSH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHH-HCCCEEEEEcCCH
Confidence            589999999998 45  9999999984 7899999998874

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=95.21  E-value=0.02  Score=51.40  Aligned_cols=103  Identities=16%  Similarity=0.100  Sum_probs=62.6

Q ss_pred             EEEEEcC-ChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 022672           75 TVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  150 (294)
Q Consensus        75 tvGIIGl-G~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  150 (294)
                      ++.|+|. |++|+.+++.+ ...|++ |...+|.....                 ...+...+.+++++..  ..|++++
T Consensus        15 ~v~V~Gasg~~G~~~~~~l-~~~g~~~V~~VnP~~~g~-----------------~i~G~~vy~sl~el~~~~~~Dv~ii   76 (294)
T 2yv1_A           15 KAIVQGITGRQGSFHTKKM-LECGTKIVGGVTPGKGGQ-----------------NVHGVPVFDTVKEAVKETDANASVI   76 (294)
T ss_dssp             CEEEETTTSHHHHHHHHHH-HHTTCCEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHHCCCEEEE
T ss_pred             EEEEECCCCCHHHHHHHHH-HhCCCeEEEEeCCCCCCc-----------------eECCEeeeCCHHHHhhcCCCCEEEE
Confidence            4788899 99999999987 456776 33556542110                 0012344578999998  8999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCC-cccCHHHHHHHHHcCCc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRG-PVIDEVALVEHLKQNPM  199 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG-~~vd~~aL~~aL~~g~i  199 (294)
                      ++|. +.+...+ .+..+. .... +|..+.| ..-+++.|.++.++..+
T Consensus        77 ~vp~-~~~~~~v-~ea~~~-Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi  122 (294)
T 2yv1_A           77 FVPA-PFAKDAV-FEAIDA-GIEL-IVVITEHIPVHDTMEFVNYAEDVGV  122 (294)
T ss_dssp             CCCH-HHHHHHH-HHHHHT-TCSE-EEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred             ccCH-HHHHHHH-HHHHHC-CCCE-EEEECCCCCHHHHHHHHHHHHHcCC
Confidence            9992 3333333 333332 2222 4444444 22345678888876555

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.17  E-value=0.029  Score=51.76  Aligned_cols=95  Identities=16%  Similarity=0.110  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc---cCCHH----HHhh
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMD----EVLR  143 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~----ell~  143 (294)
                      .|++|.|+|.|.+|...++. ++.+| .+|++.+++.... +. ..       ..+....-...   ..++.    ++..
T Consensus       195 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~-~~-~~-------~lGa~~vi~~~~~~~~~~~~~v~~~~~  264 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVI-ARSLGAENVIVIAGSPNRL-KL-AE-------EIGADLTLNRRETSVEERRKAIMDITH  264 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHH-HHHTTBSEEEEEESCHHHH-HH-HH-------HTTCSEEEETTTSCHHHHHHHHHHHTT
T ss_pred             CCCEEEEECcCHHHHHHHHH-HHHcCCceEEEEcCCHHHH-HH-HH-------HcCCcEEEeccccCcchHHHHHHHHhC
Confidence            47899999999999999997 48899 5999999876432 11 11       11111100000   01111    2221


Q ss_pred             --cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          144 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       144 --~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                        ..|+|+-++... ++    -...++.++++..+|.++.
T Consensus       265 g~g~Dvvid~~g~~-~~----~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          265 GRGADFILEATGDS-RA----LLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             TSCEEEEEECSSCT-TH----HHHHHHHEEEEEEEEECCC
T ss_pred             CCCCcEEEECCCCH-HH----HHHHHHHHhcCCEEEEEec
Confidence              478888887621 11    1556677888888887754

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.15  E-value=0.041  Score=49.85  Aligned_cols=94  Identities=13%  Similarity=0.074  Sum_probs=56.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHH----HHh--hc
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD----EVL--RE  144 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----ell--~~  144 (294)
                      .|++|.|+|. |.||..+++.+ +..|++|++.+++.... +.. ..+       +....-.....++.    ++.  ..
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a-~~~G~~Vi~~~~~~~~~-~~~-~~~-------ga~~~~d~~~~~~~~~~~~~~~~~~  235 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIA-KLFGARVIATAGSEDKL-RRA-KAL-------GADETVNYTHPDWPKEVRRLTGGKG  235 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHH-HHTTCEEEEEESSHHHH-HHH-HHH-------TCSEEEETTSTTHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH-Hhc-------CCCEEEcCCcccHHHHHHHHhCCCC
Confidence            5789999999 99999999985 78999999999875432 111 111       11100000011222    222  24


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|+|+.+..  .++    -...+..|+++..+|.++.
T Consensus       236 ~d~vi~~~g--~~~----~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          236 ADKVVDHTG--ALY----FEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             EEEEEESSC--SSS----HHHHHHHEEEEEEEEESSC
T ss_pred             ceEEEECCC--HHH----HHHHHHhhccCCEEEEEec
Confidence            678877775  221    2556677777777777753

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=95.15  E-value=0.022  Score=51.12  Aligned_cols=93  Identities=13%  Similarity=0.130  Sum_probs=62.4

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC-HHHHhhcCCEEE
Q 022672           72 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVIS  149 (294)
Q Consensus        72 ~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiV~  149 (294)
                      .|++|.|+| .|.+|...++.+ +.+|++|++.++..+  . ++...+       +....-.....+ +.+.+...|+|+
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~~~~~--~-~~~~~l-------Ga~~~i~~~~~~~~~~~~~g~D~v~  220 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTASKRN--H-AFLKAL-------GAEQCINYHEEDFLLAISTPVDAVI  220 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEECHHH--H-HHHHHH-------TCSEEEETTTSCHHHHCCSCEEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEeccch--H-HHHHHc-------CCCEEEeCCCcchhhhhccCCCEEE
Confidence            578999997 999999999984 789999998874322  1 111111       211111111234 666667899999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      -++.. +    .+ ...++.++++..+|.++.
T Consensus       221 d~~g~-~----~~-~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          221 DLVGG-D----VG-IQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             ESSCH-H----HH-HHHGGGEEEEEEEEECCS
T ss_pred             ECCCc-H----HH-HHHHHhccCCCEEEEeCC
Confidence            98862 1    12 667889999999998853

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=95.14  E-value=0.1  Score=47.86  Aligned_cols=97  Identities=20%  Similarity=0.175  Sum_probs=60.1

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hcCC
Q 022672           71 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READ  146 (294)
Q Consensus        71 l~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aD  146 (294)
                      -.|++|.|+| .|.||..+++.+ +..|++|++.+. ... .+. ...+       +....-.....++.+-+   ...|
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla-~~~Ga~Vi~~~~-~~~-~~~-~~~l-------Ga~~v~~~~~~~~~~~~~~~~g~D  250 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVM-KAWDAHVTAVCS-QDA-SEL-VRKL-------GADDVIDYKSGSVEEQLKSLKPFD  250 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEC-GGG-HHH-HHHT-------TCSEEEETTSSCHHHHHHTSCCBS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEeC-hHH-HHH-HHHc-------CCCEEEECCchHHHHHHhhcCCCC
Confidence            3588999999 799999999975 789999998873 322 221 1111       21111001112333333   3589


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      +|+-++.....+    -...+..++++..+|.++..
T Consensus       251 ~vid~~g~~~~~----~~~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          251 FILDNVGGSTET----WAPDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             EEEESSCTTHHH----HGGGGBCSSSCCEEEESCCS
T ss_pred             EEEECCCChhhh----hHHHHHhhcCCcEEEEeCCC
Confidence            999988632111    14456778999999999754

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.14  E-value=0.025  Score=51.67  Aligned_cols=93  Identities=13%  Similarity=0.133  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCChHHHHH-HHHHh-hcCCCE-EEEEcCCch---hHHHHHHhhhhhhhhhcCCCCccccccCCHHH---Hh
Q 022672           72 KGQTVGVIGAGRIGSAY-ARMMV-EGFKMN-LIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDE---VL  142 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~v-A~~L~-~~~g~~-V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e---ll  142 (294)
                      .+++|.|+|.|.+|... ++. + +.+|++ |++.+++..   .. +. ...+       +.... .....++.+   +-
T Consensus       172 ~~~~VlV~GaG~vG~~a~iql-a~k~~Ga~~Vi~~~~~~~~~~~~-~~-~~~l-------Ga~~v-~~~~~~~~~i~~~~  240 (357)
T 2b5w_A          172 DPSSAFVLGNGSLGLLTLAML-KVDDKGYENLYCLGRRDRPDPTI-DI-IEEL-------DATYV-DSRQTPVEDVPDVY  240 (357)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-HHCTTCCCEEEEEECCCSSCHHH-HH-HHHT-------TCEEE-ETTTSCGGGHHHHS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHHHcCCcEEEEEeCCcccHHHH-HH-HHHc-------CCccc-CCCccCHHHHHHhC
Confidence            45899999999999999 886 6 789997 999998654   32 11 1111       11111 001112222   20


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ...|+|+-++.. +.+    -...++.++++..+|.++
T Consensus       241 gg~Dvvid~~g~-~~~----~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          241 EQMDFIYEATGF-PKH----AIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             CCEEEEEECSCC-HHH----HHHHHHHEEEEEEEEECC
T ss_pred             CCCCEEEECCCC-hHH----HHHHHHHHhcCCEEEEEe
Confidence            146888877752 211    145667778888888775

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=95.14  E-value=0.057  Score=51.20  Aligned_cols=121  Identities=15%  Similarity=0.101  Sum_probs=64.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhh-hh-h----------hhhcCCCCccccccCCHHH
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAY-GQ-F----------LKANGEQPVTWKRASSMDE  140 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~-~~-~----------~~~~~~~~~~~~~~~~l~e  140 (294)
                      .+|||||+|.||+.+++.+...-++++. ++|++.... ..+...+ +. +          +.... ..-......++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era-~~~a~~~yG~~~~~~~~~~~~~i~~a~-~~g~~~v~~D~ee  101 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNT-FKAIRTAYGDEENAREATTESAMTRAI-EAGKIAVTDDNDL  101 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHH-HHHHHHHHSSSTTEEECSSHHHHHHHH-HTTCEEEESCHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHH-HHHHHHhcCCccccccccchhhhhhhh-ccCCceEECCHHH
Confidence            3799999999999999887444578866 467766543 2222111 10 0          00000 0001234578999


Q ss_pred             Hhh--cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCcc
Q 022672          141 VLR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDEVALVEHLKQNPMF  200 (294)
Q Consensus       141 ll~--~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~-~vd~~aL~~aL~~g~i~  200 (294)
                      +++  +.|+|+.++|. ++...   +-.++.|+.|.-++...-.- +.+-+.|.++.++..+.
T Consensus       102 LL~d~dIDaVviaTp~-p~~H~---e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv  160 (446)
T 3upl_A          102 ILSNPLIDVIIDATGI-PEVGA---ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI  160 (446)
T ss_dssp             HHTCTTCCEEEECSCC-HHHHH---HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HhcCCCCCEEEEcCCC-hHHHH---HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe
Confidence            997  58999999984 22221   22334455565555322111 12234566655554443

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=95.13  E-value=0.049  Score=51.20  Aligned_cols=77  Identities=18%  Similarity=0.265  Sum_probs=49.3

Q ss_pred             cCCCEEEEEc-----CCh---HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 022672           71 LKGQTVGVIG-----AGR---IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  142 (294)
Q Consensus        71 l~gktvGIIG-----lG~---IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  142 (294)
                      |.|++|+|||     +|.   +.++++..+ ..||++|....|..-.......+.....+...+   ..+....+++|.+
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l-~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G---~~v~~~~d~~eav  261 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLM-TRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFG---GNFTKTNSMAEAF  261 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHH-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHS---SEEEEESCHHHHH
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CEEEEEcCHHHHh
Confidence            8899999998     354   999999886 579999999887532101111110000011111   1233457899999


Q ss_pred             hcCCEEEEc
Q 022672          143 READVISLH  151 (294)
Q Consensus       143 ~~aDiV~l~  151 (294)
                      +++|+|..-
T Consensus       262 ~~ADVVytd  270 (418)
T 2yfk_A          262 KDADVVYPK  270 (418)
T ss_dssp             TTCSEEEEC
T ss_pred             cCCCEEEEc
Confidence            999999874

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=95.12  E-value=0.13  Score=49.21  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=27.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC---EEEEEcCCc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ  107 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~---~V~~~d~~~  107 (294)
                      ++|.|||+|.||+.+|+.|++..++   +|+..|+..
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~   50 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEG   50 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccch
Confidence            4599999999999999998766666   577777543

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=95.11  E-value=0.27  Score=46.66  Aligned_cols=172  Identities=16%  Similarity=0.161  Sum_probs=106.6

Q ss_pred             CCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhc
Q 022672           16 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG   95 (294)
Q Consensus        16 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~   95 (294)
                      ..|+|.|.-   -.-+|=-+++-+|+.+|-                     .|+.|.+.+|.|.|.|..|-.+|+.| ..
T Consensus       186 ~~ipvFnDD---~qGTA~V~lAgllnAlki---------------------~gk~l~d~riV~~GAGaAGigia~ll-~~  240 (487)
T 3nv9_A          186 CDIPVWHDD---QQGTASVTLAGLLNALKL---------------------VKKDIHECRMVFIGAGSSNTTCLRLI-VT  240 (487)
T ss_dssp             CSSCEEETT---THHHHHHHHHHHHHHHHH---------------------HTCCGGGCCEEEECCSHHHHHHHHHH-HH
T ss_pred             ccCCccccc---cchHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHH-HH
Confidence            378888874   234566778888888762                     24578899999999999999999987 57


Q ss_pred             CCC---EEEEEcCCc---hhH--HHHHH-hhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHH
Q 022672           96 FKM---NLIYYDLYQ---ATR--LEKFV-TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  166 (294)
Q Consensus        96 ~g~---~V~~~d~~~---~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~  166 (294)
                      .|+   +++.+|+..   ..+  ...+. ..+...+......    ....+|.|+++.+|+++=+--  . ..+.+.++.
T Consensus       241 ~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~----~~~~~L~eav~~adVlIG~S~--~-~pg~ft~e~  313 (487)
T 3nv9_A          241 AGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNP----SKFGSIAEACVGADVLISLST--P-GPGVVKAEW  313 (487)
T ss_dssp             TTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCT----TCCCSHHHHHTTCSEEEECCC--S-SCCCCCHHH
T ss_pred             cCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhccc----ccCCCHHHHHhcCCEEEEecc--c-CCCCCCHHH
Confidence            888   799999762   111  11000 0000001110100    023589999999997654431  1 157899999


Q ss_pred             HhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCC
Q 022672          167 LATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  230 (294)
Q Consensus       167 l~~mk~gailIN~aRG~~-vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia  230 (294)
                      ++.|.+..++.-.|.... +..++   +.+.|+...|    +..-+.|    =+..|+++-|-++
T Consensus       314 V~~Ma~~PIIFaLSNPtpEi~pe~---A~~~G~aIvA----TGrsd~P----nQ~NN~liFPGI~  367 (487)
T 3nv9_A          314 IKSMGEKPIVFCCANPVPEIYPYE---AKEAGAYIVA----TGRGDFP----NQVNNSVGFPGIL  367 (487)
T ss_dssp             HHTSCSSCEEEECCSSSCSSCHHH---HHHTTCSEEE----ESCTTSS----SBCCGGGTHHHHH
T ss_pred             HHhhcCCCEEEECCCCCccCCHHH---HHHhCCEEEE----ECCCCCc----ccCcceeEcchhh
Confidence            999999999999987664 22222   2335552222    1111112    2567888888654

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.08  E-value=0.28  Score=43.81  Aligned_cols=68  Identities=15%  Similarity=0.080  Sum_probs=50.2

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           70 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        70 ~l~gktvGIIGl---G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      .+.|.+|+++|=   +++.++.+..+ ..+|++|....|..-.. +.        +..     .+.....+++|.++++|
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~-~~~g~~v~~~~P~~~~p-~~--------~~~-----~g~~~~~d~~eav~~aD  207 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLL-NMFGAKIGVCGPKTLIP-RD--------VEV-----FKVDVFDDVDKGIDWAD  207 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHH-HHTTCEEEEESCGGGSC-TT--------GGG-----GCEEEESSHHHHHHHCS
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HHCCCEEEEECCchhCC-ch--------HHH-----CCCEEEcCHHHHhCCCC
Confidence            488999999997   89999999987 57999999988743210 00        001     12334679999999999


Q ss_pred             EEEEccC
Q 022672          147 VISLHPV  153 (294)
Q Consensus       147 iV~l~~P  153 (294)
                      +|.. +-
T Consensus       208 vvy~-~~  213 (291)
T 3d6n_B          208 VVIW-LR  213 (291)
T ss_dssp             EEEE-CC
T ss_pred             EEEE-eC
Confidence            9988 44

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.03  E-value=0.023  Score=47.74  Aligned_cols=73  Identities=16%  Similarity=0.036  Sum_probs=47.4

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|.|.| .|.||+.+++.| ...|.+|++.+++...... ....    +.   ....+.....+++++++++|+|+.+.
T Consensus         5 ~~ilItGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~-~~~~----~~---~~~~Dl~d~~~~~~~~~~~d~vi~~a   75 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEA-LNRGFEVTAVVRHPEKIKI-ENEH----LK---VKKADVSSLDEVCEVCKGADAVISAF   75 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHH-HTTTCEEEEECSCGGGCCC-CCTT----EE---EECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCchHHHHHHHHH-HHCCCEEEEEEcCcccchh-ccCc----eE---EEEecCCCHHHHHHHhcCCCEEEEeC
Confidence            6899999 599999999998 5779999999987653210 0000    00   00011112245778889999999887


Q ss_pred             CCC
Q 022672          153 VLD  155 (294)
Q Consensus       153 Plt  155 (294)
                      ...
T Consensus        76 ~~~   78 (227)
T 3dhn_A           76 NPG   78 (227)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.02  E-value=0.015  Score=50.86  Aligned_cols=70  Identities=9%  Similarity=0.117  Sum_probs=45.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc-CCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDiV~l  150 (294)
                      .+++|.|.|.|.||+.+++.| ...|.+|++.+++.......        +..   .........+++++++. +|+|+.
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~--------~~~---~~~Dl~d~~~~~~~~~~~~d~vih   69 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRL-TAQGHEVTGLRRSAQPMPAG--------VQT---LIADVTRPDTLASIVHLRPEILVY   69 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHH-HHTTCCEEEEECTTSCCCTT--------CCE---EECCTTCGGGCTTGGGGCCSEEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCccccccC--------Cce---EEccCCChHHHHHhhcCCCCEEEE
Confidence            357899999999999999998 46799999998875431000        000   00011122345567776 999987


Q ss_pred             ccC
Q 022672          151 HPV  153 (294)
Q Consensus       151 ~~P  153 (294)
                      +..
T Consensus        70 ~a~   72 (286)
T 3gpi_A           70 CVA   72 (286)
T ss_dssp             CHH
T ss_pred             eCC
Confidence            764

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=95.02  E-value=0.059  Score=51.15  Aligned_cols=107  Identities=11%  Similarity=0.114  Sum_probs=63.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhh---------cCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 022672           74 QTVGVIGAGRIGSAYARMMVE---------GFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  143 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~---------~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  143 (294)
                      .+|||||+|.||+.+++.|.+         +.++++.+ +|++.... ..+..              ......++++++.
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~-~~~~~--------------~~~~~~d~~ell~   75 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKA-EALAG--------------GLPLTTNPFDVVD   75 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHH-HHHHT--------------TCCEESCTHHHHT
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHh-hhhcc--------------cCcccCCHHHHhc
Confidence            479999999999999876531         25777664 56654332 11100              0123468999996


Q ss_pred             --cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc
Q 022672          144 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  199 (294)
Q Consensus       144 --~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v-d~~aL~~aL~~g~i  199 (294)
                        +.|+|+.++|......    .-..+.|+.|.-++-.--+-.. +-+.|.++.++..+
T Consensus        76 d~diDvVve~tp~~~~h~----~~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv  130 (444)
T 3mtj_A           76 DPEIDIVVELIGGLEPAR----ELVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGV  130 (444)
T ss_dssp             CTTCCEEEECCCSSTTHH----HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEcCCCchHHH----HHHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCC
Confidence              5789999998422211    1123455667666644332222 23567776666544

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=95.00  E-value=0.017  Score=52.25  Aligned_cols=91  Identities=11%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-c-ccccCCHHHH-hhcCCEEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-T-WKRASSMDEV-LREADVIS  149 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~el-l~~aDiV~  149 (294)
                      .+++.|+|+|.+|+.+++.| ...|. |++.|++++...  ..+        .+.... + ......|+++ ++++|.|+
T Consensus       115 ~~~viI~G~G~~g~~l~~~L-~~~g~-v~vid~~~~~~~--~~~--------~~~~~i~gd~~~~~~L~~a~i~~a~~vi  182 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVRKK--VLR--------SGANFVHGDPTRVSDLEKANVRGARAVI  182 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTG-GGSCE-EEEESCGGGHHH--HHH--------TTCEEEESCTTSHHHHHHTCSTTEEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHH-HhCCc-EEEEeCChhhhh--HHh--------CCcEEEEeCCCCHHHHHhcChhhccEEE
Confidence            56899999999999999997 67888 999998765421  111        010000 0 0011234444 67899999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEE
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILV  177 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailI  177 (294)
                      ++.+.  +...+.-....+.+.+...+|
T Consensus       183 ~~~~~--d~~n~~~~~~ar~~~~~~~ii  208 (336)
T 1lnq_A          183 VDLES--DSETIHCILGIRKIDESVRII  208 (336)
T ss_dssp             ECCSS--HHHHHHHHHHHHTTCTTSEEE
T ss_pred             EcCCc--cHHHHHHHHHHHHHCCCCeEE
Confidence            99873  334444456667777764444

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.98  E-value=0.045  Score=49.43  Aligned_cols=69  Identities=13%  Similarity=0.190  Sum_probs=43.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhh-cCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cCC
Q 022672           74 QTVGVIGAGRIGSAYARMMVE-GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  146 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~-~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~aD  146 (294)
                      .+|||||+|.||+.+++.+.+ .-++++. ++|+++......+...+       +..    ....+.+++++     +.|
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~-------g~~----~~~~~~e~ll~~~~~~~iD   73 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM-------GVT----TTYAGVEGLIKLPEFADID   73 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT-------TCC----EESSHHHHHHHSGGGGGEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHc-------CCC----cccCCHHHHHhccCCCCCc
Confidence            479999999999999998744 3467754 56776543111111111       110    11246777764     579


Q ss_pred             EEEEccC
Q 022672          147 VISLHPV  153 (294)
Q Consensus       147 iV~l~~P  153 (294)
                      +|+.++|
T Consensus        74 vV~~atp   80 (312)
T 1nvm_B           74 FVFDATS   80 (312)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999998

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=94.94  E-value=0.04  Score=51.11  Aligned_cols=100  Identities=15%  Similarity=0.090  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCH-HH----Hhh--
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DE----VLR--  143 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~e----ll~--  143 (294)
                      .|++|.|+|.|.||...++. ++.+|+ +|++.+++.... + +..       ..+...+.. ...++ .+    +..  
T Consensus       185 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~-~-~a~-------~lGa~~i~~-~~~~~~~~~~~~~~~g~  253 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAG-ARLLGAACVIVGDQNPERL-K-LLS-------DAGFETIDL-RNSAPLRDQIDQILGKP  253 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHHTCSEEEEEESCHHHH-H-HHH-------TTTCEEEET-TSSSCHHHHHHHHHSSS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEEcCCHHHH-H-HHH-------HcCCcEEcC-CCcchHHHHHHHHhCCC
Confidence            58899999999999999987 478999 999999876432 1 111       112110111 11221 22    222  


Q ss_pred             cCCEEEEccCCCccc-----cc----cccHHHHhcCCCCcEEEEcCCC
Q 022672          144 EADVISLHPVLDKTT-----YH----LINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t-----~~----li~~~~l~~mk~gailIN~aRG  182 (294)
                      ..|+|+-++......     .+    -.-.+.++.++++..++.++-.
T Consensus       254 g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          254 EVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             CEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred             CCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence            589999988732100     00    0125667888999998887643

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=94.92  E-value=0.037  Score=46.89  Aligned_cols=73  Identities=18%  Similarity=0.115  Sum_probs=48.4

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhhcC--CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhcC
Q 022672           71 LKGQTVGVIG-AGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREA  145 (294)
Q Consensus        71 l~gktvGIIG-lG~IG~~vA~~L~~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~a  145 (294)
                      ..+++|.|.| .|.||+.+++.|+ ..  |.+|++.+++.... +..         ......  .......++++++++.
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~-~~~~g~~V~~~~r~~~~~-~~~---------~~~~~~~~~D~~d~~~~~~~~~~~   70 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGK-EKI---------GGEADVFIGDITDADSINPAFQGI   70 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHH-HTTTTCEEEEEESCHHHH-HHT---------TCCTTEEECCTTSHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHH-hcCCCcEEEEEEcCCCch-hhc---------CCCeeEEEecCCCHHHHHHHHcCC
Confidence            3578999999 5999999999985 45  89999999875432 110         000000  1111224577888999


Q ss_pred             CEEEEccCC
Q 022672          146 DVISLHPVL  154 (294)
Q Consensus       146 DiV~l~~Pl  154 (294)
                      |+|+.+...
T Consensus        71 d~vi~~a~~   79 (253)
T 1xq6_A           71 DALVILTSA   79 (253)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEeccc
Confidence            999988754

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=94.90  E-value=0.018  Score=50.02  Aligned_cols=38  Identities=18%  Similarity=0.132  Sum_probs=32.6

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIGl---G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .+.||++.|.|.   |.||+++|+.|+ ..|++|+..+++..
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~   45 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLK-EAGAEVALSYQAER   45 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHH-HHTCEEEEEESCGG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEcCCHH
Confidence            578999999997   699999999985 66999999988753

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=94.88  E-value=0.045  Score=50.23  Aligned_cols=30  Identities=20%  Similarity=0.440  Sum_probs=24.1

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEEE
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYY  103 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~  103 (294)
                      .+|||+| +|.||+.+.+.|...-.+++.+.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai   35 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKV   35 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEE
Confidence            4799999 89999999998743335687766

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=94.87  E-value=0.031  Score=51.00  Aligned_cols=29  Identities=28%  Similarity=0.505  Sum_probs=24.4

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD  104 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d  104 (294)
                      +|||+|+|.||+.+.|.|... +++|.+.+
T Consensus         2 kVgInG~G~IGr~vlr~l~~~-~~evvain   30 (331)
T 2g82_O            2 KVGINGFGRIGRQVFRILHSR-GVEVALIN   30 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCEEEEEe
Confidence            799999999999999987544 88887654

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=94.86  E-value=0.035  Score=48.62  Aligned_cols=41  Identities=22%  Similarity=0.077  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhH
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  110 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~  110 (294)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|+..+++....
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la-~~G~~V~~~~~~~~~~   65 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELA-AAGAKVAVNYASSAGA   65 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCChHH
Confidence            4689999999987 789999999984 7899999888754433

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=94.85  E-value=0.042  Score=48.37  Aligned_cols=38  Identities=21%  Similarity=0.176  Sum_probs=31.2

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|+..+++.
T Consensus        19 ~~l~~k~~lVTGas~gIG~aia~~L~-~~G~~V~~~~r~~   57 (288)
T 2x9g_A           19 SHMEAPAAVVTGAAKRIGRAIAVKLH-QTGYRVVIHYHNS   57 (288)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHH-HHTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCeEEEEeCCc
Confidence            4689999999986 899999999985 6799999998876

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=94.85  E-value=0.065  Score=49.55  Aligned_cols=100  Identities=20%  Similarity=0.129  Sum_probs=59.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH----Hhh--c
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLR--E  144 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~--~  144 (294)
                      .|++|.|+|.|.+|...++. ++.+|+ +|++.|++.... +. ...+       +...+......++.+    +..  .
T Consensus       185 ~g~~VlV~GaG~vG~~aiql-Ak~~Ga~~Vi~~~~~~~~~-~~-a~~l-------Ga~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAAS-ARLLGAAVVIVGDLNPARL-AH-AKAQ-------GFEIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEEESCHHHH-HH-HHHT-------TCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHCCCCeEEEEcCCHHHH-HH-HHHc-------CCcEEccCCcchHHHHHHHHhCCCC
Confidence            57899999999999999987 588999 799998876432 11 1111       211111111112322    222  4


Q ss_pred             CCEEEEccCCCcccc-----c-----cccHHHHhcCCCCcEEEEcCC
Q 022672          145 ADVISLHPVLDKTTY-----H-----LINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       145 aDiV~l~~Plt~~t~-----~-----li~~~~l~~mk~gailIN~aR  181 (294)
                      .|+|+-++.......     +     -.-.+.++.++++..++.++-
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            799998886321000     0     012566778888888888763

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=94.82  E-value=0.025  Score=49.16  Aligned_cols=37  Identities=22%  Similarity=0.193  Sum_probs=32.1

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           70 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        70 ~l~gktvGIIGl---G~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      .+.||++.|.|.   |.||+++|+.|+ ..|++|+..+++.
T Consensus         6 ~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~   45 (265)
T 1qsg_A            6 FLSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQND   45 (265)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHH-HTTCEEEEEESST
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEEcCcH
Confidence            378999999997   699999999984 6799999998765

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=94.80  E-value=0.074  Score=46.77  Aligned_cols=40  Identities=18%  Similarity=0.154  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|++.+++...
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~~~~   65 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALA-ASGFDIAITGIGDAE   65 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCCHH
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHH-HCCCeEEEEeCCCHH
Confidence            4689999999987 789999999984 789999998864443

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.79  E-value=0.042  Score=49.79  Aligned_cols=95  Identities=16%  Similarity=0.147  Sum_probs=59.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHH----HHhh--
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD----EVLR--  143 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----ell~--  143 (294)
                      -.|.+|.|+|.|.+|...++.+ +.. +.+|++.+++.... + +..       ..+.... .....++.    ++..  
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla-~~~g~~~Vi~~~~~~~~~-~-~~~-------~lGa~~~-i~~~~~~~~~v~~~t~g~  238 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQIL-RAVSAARVIAVDLDDDRL-A-LAR-------EVGADAA-VKSGAGAADAIRELTGGQ  238 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESCHHHH-H-HHH-------HTTCSEE-EECSTTHHHHHHHHHGGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHH-H-HHH-------HcCCCEE-EcCCCcHHHHHHHHhCCC
Confidence            3588999999999999999874 666 78999998876542 1 111       1121111 11111222    2222  


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      ..|+|+-++.. +.+    -...++.++++..++.++-
T Consensus       239 g~d~v~d~~G~-~~~----~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          239 GATAVFDFVGA-QST----IDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             CEEEEEESSCC-HHH----HHHHHHHEEEEEEEEECSC
T ss_pred             CCeEEEECCCC-HHH----HHHHHHHHhcCCEEEEECC
Confidence            68899988862 212    1566778888888888853

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=94.79  E-value=0.047  Score=48.96  Aligned_cols=103  Identities=18%  Similarity=0.104  Sum_probs=61.7

Q ss_pred             EEEEEcC-ChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--c-CCEEE
Q 022672           75 TVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E-ADVIS  149 (294)
Q Consensus        75 tvGIIGl-G~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~-aDiV~  149 (294)
                      ++.|+|. |++|+.+++.+ ...|.+ |...+|.....                 ...+...+.+++++..  . .|+++
T Consensus        15 ~vvV~Gasg~~G~~~~~~l-~~~g~~~v~~VnP~~~g~-----------------~i~G~~vy~sl~el~~~~~~~DvaI   76 (297)
T 2yv2_A           15 RVLVQGITGREGSFHAKAM-LEYGTKVVAGVTPGKGGS-----------------EVHGVPVYDSVKEALAEHPEINTSI   76 (297)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHCTTCCEEE
T ss_pred             EEEEECCCCCHHHHHHHHH-HhCCCcEEEEeCCCCCCc-----------------eECCEeeeCCHHHHhhcCCCCCEEE
Confidence            4677799 99999999987 456887 34566543110                 0012344578999987  5 99999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDEVALVEHLKQNPM  199 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~-~vd~~aL~~aL~~g~i  199 (294)
                      +++|. +.+...+ ++..+. .-.. +|..+.|= ..+++.|.++.++..+
T Consensus        77 i~vp~-~~~~~~v-~ea~~~-Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi  123 (297)
T 2yv2_A           77 VFVPA-PFAPDAV-YEAVDA-GIRL-VVVITEGIPVHDTMRFVNYARQKGA  123 (297)
T ss_dssp             ECCCG-GGHHHHH-HHHHHT-TCSE-EEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred             EecCH-HHHHHHH-HHHHHC-CCCE-EEEECCCCCHHHHHHHHHHHHHcCC
Confidence            99993 3333333 333332 2222 44444442 2345678888776555

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.78  E-value=0.068  Score=46.95  Aligned_cols=78  Identities=21%  Similarity=0.178  Sum_probs=46.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhH--HHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhcCCE
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR--LEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADV  147 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDi  147 (294)
                      .++|.|.|. |.||+.+++.| ...|.+|++.++.....  .+.. ... ..+...+...  .+.....++.++++++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~~~~-~~~-~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~   80 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKAS-LDLGHPTFLLVRESTASSNSEKA-QLL-ESFKASGANIVHGSIDDHASLVEAVKNVDV   80 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCCCCTTTTHHHH-HHH-HHHHTTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEEcCCcHHHHHHHHHH-HhCCCCEEEEECCcccccCHHHH-HHH-HHHHhCCCEEEEeccCCHHHHHHHHcCCCE
Confidence            468999996 99999999998 46789999988864211  0000 000 0000111100  111122457788889999


Q ss_pred             EEEccC
Q 022672          148 ISLHPV  153 (294)
Q Consensus       148 V~l~~P  153 (294)
                      |+.+.+
T Consensus        81 vi~~a~   86 (308)
T 1qyc_A           81 VISTVG   86 (308)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            988876

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=94.78  E-value=0.1  Score=46.78  Aligned_cols=102  Identities=15%  Similarity=0.185  Sum_probs=56.5

Q ss_pred             CEEEEEc-CChHHHHHHHHHhh-cCCCEEEEEcC--CchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           74 QTVGVIG-AGRIGSAYARMMVE-GFKMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~-~~g~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ++|+|+| .|.+|+.++..|+. +...++..+|.  .... .+...........  ......... .+ .+.+++||+|+
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~-~~~~~~dl~~~~~--~~~~~~v~~-~~-~~a~~~aDvVi   75 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDD-TVGQAADTNHGIA--YDSNTRVRQ-GG-YEDTAGSDVVV   75 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHH-HHHHHHHHHHHHT--TTCCCEEEE-CC-GGGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhh-HHHHHHHHHHHHh--hCCCcEEEe-CC-HHHhCCCCEEE
Confidence            3799999 99999999988743 23347888998  5432 1111111111000  011112211 23 56789999999


Q ss_pred             EccCCCcccccc-----------ccH---HHHhcCCCCcEEEEcCC
Q 022672          150 LHPVLDKTTYHL-----------INK---ERLATMKKEAILVNCSR  181 (294)
Q Consensus       150 l~~Plt~~t~~l-----------i~~---~~l~~mk~gailIN~aR  181 (294)
                      ++..... ..++           +-+   +.+....|.+++++++-
T Consensus        76 ~~ag~~~-~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN  120 (303)
T 1o6z_A           76 ITAGIPR-QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (303)
T ss_dssp             ECCCCCC-CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             EcCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            9986432 2221           111   22233467899998743

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=94.76  E-value=0.019  Score=48.77  Aligned_cols=77  Identities=12%  Similarity=0.158  Sum_probs=49.7

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhhcCCC--EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           71 LKGQTVGVIG-AGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        71 l~gktvGIIG-lG~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      +.+|++.|.| .|.||+.+++.|+ ..|.  +|++.+++...........    +   .....+.....+++++++..|+
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~-~~G~~~~V~~~~r~~~~~~~~~~~~----~---~~~~~D~~d~~~~~~~~~~~d~   87 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEIL-EQGLFSKVTLIGRRKLTFDEEAYKN----V---NQEVVDFEKLDDYASAFQGHDV   87 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHH-HHTCCSEEEEEESSCCCCCSGGGGG----C---EEEECCGGGGGGGGGGGSSCSE
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHH-cCCCCCEEEEEEcCCCCccccccCC----c---eEEecCcCCHHHHHHHhcCCCE
Confidence            5688999999 5999999999984 6788  9999988754311000000    0   0000111223467778889999


Q ss_pred             EEEccCCC
Q 022672          148 ISLHPVLD  155 (294)
Q Consensus       148 V~l~~Plt  155 (294)
                      |+.+....
T Consensus        88 vi~~ag~~   95 (242)
T 2bka_A           88 GFCCLGTT   95 (242)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCcc
Confidence            99988643

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=94.73  E-value=0.059  Score=48.53  Aligned_cols=93  Identities=13%  Similarity=0.097  Sum_probs=55.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHH----HHh--hc
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD----EVL--RE  144 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----ell--~~  144 (294)
                      .|++|.|+|. |.||..+++.+ +..|++|++.+++.... +.. ...       +..........++.    +..  ..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a-~~~G~~Vi~~~~~~~~~-~~~-~~~-------g~~~~~d~~~~~~~~~i~~~~~~~~  214 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWA-RHLGATVIGTVSTEEKA-ETA-RKL-------GCHHTINYSTQDFAEVVREITGGKG  214 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHH-HHTTCEEEEEESSHHHH-HHH-HHH-------TCSEEEETTTSCHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH-HHc-------CCCEEEECCCHHHHHHHHHHhCCCC
Confidence            5789999995 99999999986 78999999999875432 111 111       11000000011221    222  14


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .|+++.+...  +    .-...+..|+++..+|.++
T Consensus       215 ~d~vi~~~g~--~----~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          215 VDVVYDSIGK--D----TLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             EEEEEECSCT--T----THHHHHHTEEEEEEEEECC
T ss_pred             CeEEEECCcH--H----HHHHHHHhhccCCEEEEEe
Confidence            6777777652  1    1256667777777777764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=94.72  E-value=0.026  Score=48.93  Aligned_cols=40  Identities=35%  Similarity=0.383  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEcC-C-hHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           69 NLLKGQTVGVIGA-G-RIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        69 ~~l~gktvGIIGl-G-~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      ..+.||++.|.|. | .||+++|+.|+ ..|++|+..+++...
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~-~~G~~V~~~~r~~~~   59 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRAL-LEGADVVISDYHERR   59 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHH-HCCCEEEEecCCHHH
Confidence            3589999999998 8 59999999984 779999999987654

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=94.71  E-value=0.035  Score=47.53  Aligned_cols=36  Identities=28%  Similarity=0.238  Sum_probs=31.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      .+.||++.|.|. |.||+.+++.|+ ..|++|++.+++
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~-~~G~~V~~~~r~   40 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFA-RAGAKVGLHGRK   40 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEECCC
Confidence            578999999986 899999999984 679999999887

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.70  E-value=0.052  Score=49.26  Aligned_cols=93  Identities=17%  Similarity=0.222  Sum_probs=56.6

Q ss_pred             CCCEEEEE-cCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cC
Q 022672           72 KGQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  145 (294)
Q Consensus        72 ~gktvGII-GlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  145 (294)
                      .|++|.|+ |.|.||...++.+ +.+|++|++.+++.... +. ....       +.... .....++.+.+.     ..
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~-~~-~~~l-------Ga~~v-i~~~~~~~~~~~~~~~~g~  218 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIA-KAYGLRVITTASRNETI-EW-TKKM-------GADIV-LNHKESLLNQFKTQGIELV  218 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEECCSHHHH-HH-HHHH-------TCSEE-ECTTSCHHHHHHHHTCCCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH-HH-HHhc-------CCcEE-EECCccHHHHHHHhCCCCc
Confidence            68999999 7999999999985 78999999999865432 11 1111       11111 111123333222     46


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      |+|+-|+.. +.    .-...++.++++..+|.++
T Consensus       219 Dvv~d~~g~-~~----~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          219 DYVFCTFNT-DM----YYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             EEEEESSCH-HH----HHHHHHHHEEEEEEEEESS
T ss_pred             cEEEECCCc-hH----HHHHHHHHhccCCEEEEEC
Confidence            888877651 11    1145567778887777764

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=94.69  E-value=0.03  Score=51.24  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=28.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ  107 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~  107 (294)
                      .+|||.|||+||+.++|.+ ..++++|++ .|+..
T Consensus         8 ~kvgInGFGRIGrlv~R~~-~~~~veivainDp~~   41 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRAC-MEKGVKVVAVNDPFI   41 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEECTTC
T ss_pred             eEEEEECCChHHHHHHHHH-HhCCCEEEEEeCCCC
Confidence            4899999999999999985 678899887 67654

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.69  E-value=0.056  Score=48.80  Aligned_cols=95  Identities=17%  Similarity=0.185  Sum_probs=59.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhh-----c
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLR-----E  144 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~-----~  144 (294)
                      .|++|.|+|. |.||..+++.+ +..|++|++.+++.... +.....       .+.... ......++.+.+.     .
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a-~~~G~~V~~~~~~~~~~-~~~~~~-------~g~~~~~d~~~~~~~~~~~~~~~~~~  225 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLA-KMMGCYVVGSAGSKEKV-DLLKTK-------FGFDDAFNYKEESDLTAALKRCFPNG  225 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHHT-------SCCSEEEETTSCSCSHHHHHHHCTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHH-------cCCceEEecCCHHHHHHHHHHHhCCC
Confidence            5889999997 99999999985 78999999999875432 111101       111100 0011123333332     4


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|+|+.+...  .    .-...+..++++..+|.++-
T Consensus       226 ~d~vi~~~g~--~----~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          226 IDIYFENVGG--K----MLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             EEEEEESSCH--H----HHHHHHTTEEEEEEEEECCC
T ss_pred             CcEEEECCCH--H----HHHHHHHHHhcCCEEEEEcc
Confidence            7888887752  1    22566778888888888753

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=94.69  E-value=0.03  Score=51.09  Aligned_cols=102  Identities=14%  Similarity=0.137  Sum_probs=58.6

Q ss_pred             EEEEEcCChHHHHHHHHHhhcC--------CCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGF--------KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~--------g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      +|||||+|.||+.+++.+.+.-        ++++.+ +|++.... .             + .+. .....++++++ +.
T Consensus         5 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~-~-------------~-~~~-~~~~~d~~~ll-~i   67 (332)
T 2ejw_A            5 KIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP-R-------------A-IPQ-ELLRAEPFDLL-EA   67 (332)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC-C-------------S-SCG-GGEESSCCCCT-TC
T ss_pred             EEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh-h-------------c-cCc-ccccCCHHHHh-CC
Confidence            6999999999999999874321        567654 56553211 0             0 011 12345778888 99


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQN  197 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~~aL~~g  197 (294)
                      |+|+.|.|......    .-..+.|+.|.-+|...-..+ -.-+.|.++.++.
T Consensus        68 DvVve~t~~~~~a~----~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           68 DLVVEAMGGVEAPL----RLVLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             SEEEECCCCSHHHH----HHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             CEEEECCCCcHHHH----HHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            99999998432111    112234555655555322222 2445666666665

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=94.69  E-value=0.086  Score=47.81  Aligned_cols=93  Identities=12%  Similarity=0.063  Sum_probs=58.7

Q ss_pred             CCEEEEE-cCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------hcC
Q 022672           73 GQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------REA  145 (294)
Q Consensus        73 gktvGII-GlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~a  145 (294)
                      ++++.|. |.|.||...++.+ +..|++|++.+++.... +. ...+       +....-.....++.+.+      ...
T Consensus       165 ~~~vli~gg~g~vG~~a~qla-~~~Ga~Vi~~~~~~~~~-~~-~~~~-------Ga~~~~~~~~~~~~~~v~~~~~~~g~  234 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLA-KEEGFRPIVTVRRDEQI-AL-LKDI-------GAAHVLNEKAPDFEATLREVMKAEQP  234 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESCGGGH-HH-HHHH-------TCSEEEETTSTTHHHHHHHHHHHHCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HHHc-------CCCEEEECCcHHHHHHHHHHhcCCCC
Confidence            3677776 8999999999975 78999999999766542 11 1111       11111001112333322      269


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |+|+-++.. +.    + ...+..|+++..+|.++.
T Consensus       235 D~vid~~g~-~~----~-~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          235 RIFLDAVTG-PL----A-SAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             CEEEESSCH-HH----H-HHHHHHSCTTCEEEECCC
T ss_pred             cEEEECCCC-hh----H-HHHHhhhcCCCEEEEEec
Confidence            999988862 11    1 667888999999999863

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=94.66  E-value=0.31  Score=45.82  Aligned_cols=120  Identities=18%  Similarity=0.242  Sum_probs=68.8

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCc---------hhHHHHHHhhhhh--h--hhhcCCCCcccc
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ---------ATRLEKFVTAYGQ--F--LKANGEQPVTWK  133 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~---------~~~~~~~~~~~~~--~--~~~~~~~~~~~~  133 (294)
                      |.++.|++|.|.|+|++|+.+|+.| ...|++|++ .|.+.         .....++.+..+.  .  ....+ .   ..
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L-~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~-~---~~  279 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKD-N---AE  279 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTS-C---CC
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCcccccccccc-C---ce
Confidence            4579999999999999999999997 689999984 45420         1111111110000  0  00000 0   00


Q ss_pred             ccCCHHHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          134 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       134 ~~~~l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ...+-++++ ..||+++-|.     +.+.|+.+....++- .+++-.+.+.+- .++ .+.|.+..+.
T Consensus       280 ~~~~~~~~~~~~~Dil~P~A-----~~~~I~~~~a~~l~a-k~V~EgAN~p~t-~~a-~~~l~~~Gi~  339 (421)
T 1v9l_A          280 FVKNPDAIFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPTT-PEA-ERILYERGVV  339 (421)
T ss_dssp             CCSSTTGGGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCBC-HHH-HHHHHTTTCE
T ss_pred             EeCCchhhhcCCccEEEecC-----cCCccchhhHHHcCc-eEEEecCCCcCC-HHH-HHHHHHCCCE
Confidence            110223444 4799988876     345566666666643 477777888764 333 3566666654

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=94.65  E-value=0.028  Score=48.28  Aligned_cols=37  Identities=27%  Similarity=0.254  Sum_probs=30.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEE-cCCc
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYY-DLYQ  107 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~-d~~~  107 (294)
                      .+.||++.|.|. |.||+++|+.|+ ..|++|+.. +++.
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~-~~G~~v~~~~~~~~   42 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLA-NDGALVAIHYGNRK   42 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCS
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHH-HCCCeEEEEeCCch
Confidence            478999999987 799999999984 789999885 4443

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.64  E-value=0.048  Score=49.96  Aligned_cols=97  Identities=14%  Similarity=0.101  Sum_probs=56.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH--HH-H-----------HHhhhhhhhhhcCCCCcccc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-K-----------FVTAYGQFLKANGEQPVTWK  133 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~--~~-~-----------~~~~~~~~~~~~~~~~~~~~  133 (294)
                      ..|.+++|.|||+|.+|..+|+.|+ ..|+ ++..+|...-..  +. .           -.+...+.+.... ..+.+.
T Consensus        32 ~~L~~~~VlivG~GGlG~~ia~~La-~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln-p~v~v~  109 (346)
T 1y8q_A           32 KRLRASRVLLVGLKGLGAEIAKNLI-LAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN-PMVDVK  109 (346)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC-TTSEEE
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC-CCeEEE
Confidence            3689999999999999999999985 5566 788887542100  00 0           0000111111111 111111


Q ss_pred             c-----cCCHHHHhhcCCEEEEccCCCccccccccHHHHh
Q 022672          134 R-----ASSMDEVLREADVISLHPVLDKTTYHLINKERLA  168 (294)
Q Consensus       134 ~-----~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~  168 (294)
                      .     ....+++++++|+|+.+.- +.+++..+++...+
T Consensus       110 ~~~~~~~~~~~~~~~~~dvVv~~~d-~~~~r~~ln~~~~~  148 (346)
T 1y8q_A          110 VDTEDIEKKPESFFTQFDAVCLTCC-SRDVIVKVDQICHK  148 (346)
T ss_dssp             EECSCGGGCCHHHHTTCSEEEEESC-CHHHHHHHHHHHHH
T ss_pred             EEecccCcchHHHhcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence            1     1124678899999988764 56677777665443

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.61  E-value=0.21  Score=47.70  Aligned_cols=111  Identities=14%  Similarity=0.089  Sum_probs=68.6

Q ss_pred             ccCCCEEEEEcC----------ChHHHHHHHHHhhcCCCEEEEEcCCchhHH--HHHHhhhhhhhhhcCCCCccccccCC
Q 022672           70 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASS  137 (294)
Q Consensus        70 ~l~gktvGIIGl----------G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (294)
                      .+.|++|+|+|+          ..-...+++.| ...|++|.+|||......  +.....++...  ..   .......+
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L-~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~  405 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHL-MEEHAKLSVYDPKVQKSQMLNDLASVTSAQD--VE---RLITVESD  405 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSSCHHHHHHHHHHHSCHHH--HH---HHEEEESS
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHH-HHCCCEEEEECCCCCchhhHHHHHhhhcccc--cc---CceeecCC
Confidence            589999999997          34667888887 688999999999864321  11110000000  00   00122357


Q ss_pred             HHHHhhcCCEEEEccCCCccccccccH-HHHhcCCCCcEEEEcCCCcccCHHHH
Q 022672          138 MDEVLREADVISLHPVLDKTTYHLINK-ERLATMKKEAILVNCSRGPVIDEVAL  190 (294)
Q Consensus       138 l~ell~~aDiV~l~~Plt~~t~~li~~-~~l~~mk~gailIN~aRG~~vd~~aL  190 (294)
                      +.+.++++|.|++++.- ++-+. ++- ...+.|+...+++++ |+ +.|.+.+
T Consensus       406 ~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~  455 (481)
T 2o3j_A          406 PYAAARGAHAIVVLTEW-DEFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKAL  455 (481)
T ss_dssp             HHHHHTTCSEEEECSCC-GGGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHH
T ss_pred             HHHHHcCCCEEEEcCCc-HHhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHH
Confidence            78899999999999873 33333 344 344567776688886 54 4565544

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=94.59  E-value=0.1  Score=48.81  Aligned_cols=107  Identities=20%  Similarity=0.303  Sum_probs=65.3

Q ss_pred             ccCCCEEEEEcC-----C---hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 022672           70 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  141 (294)
Q Consensus        70 ~l~gktvGIIGl-----G---~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  141 (294)
                      .|.|++|+|+|-     |   ++.++++..+ ..||++|....|..-.....+.+.........+   ..+....+++|.
T Consensus       188 ~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~-~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G---~~i~~~~d~~ea  263 (399)
T 3q98_A          188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASG---GSFRQVTSMEEA  263 (399)
T ss_dssp             GGTTCEEEEECCCCSSCCCCTHHHHHHHHHH-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CEEEEESCHHHH
T ss_pred             ccCCCEEEEEEecccccCcchHHHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CEEEEEcCHHHH
Confidence            488999999984     4   6888888876 579999999887521111111110000011111   123345799999


Q ss_pred             hhcCCEEEEcc--CCCc-----------------------------cccccccHHHHhcCC-CCcEEEEcC
Q 022672          142 LREADVISLHP--VLDK-----------------------------TTYHLINKERLATMK-KEAILVNCS  180 (294)
Q Consensus       142 l~~aDiV~l~~--Plt~-----------------------------~t~~li~~~~l~~mk-~gailIN~a  180 (294)
                      ++++|+|..-+  +...                             -....++.+.++..+ |+++|..+-
T Consensus       264 v~~aDvVytd~W~Smg~~~er~~~~~~~~~~~~~~~e~~~~~r~~~~~~yqVn~elm~~a~~~daifMHcL  334 (399)
T 3q98_A          264 FKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLAQNAQHKDWHCTEEMMELTRDGEALYMHCL  334 (399)
T ss_dssp             HTTCSEEEECCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTTCCBCHHHHHTSGGGCCEECCCS
T ss_pred             hCCCCEEEecCccccchhhhhhhhccccchhhhhhhhhhhhHHHHHccCcEECHHHHhhcCCCCcEEECCC
Confidence            99999997743  0000                             012346888888877 478888774

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=94.57  E-value=0.03  Score=50.15  Aligned_cols=79  Identities=10%  Similarity=0.095  Sum_probs=50.3

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhh--
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLR--  143 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~--  143 (294)
                      ..+.|++|.|.|. |.||+.+++.| ...|.+|++.++......+. ...    +  .+..  ..+.....+++++++  
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~-~~~----l--~~v~~~~~Dl~d~~~~~~~~~~~   87 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHW-LPQGHEILVIDNFATGKREV-LPP----V--AGLSVIEGSVTDAGLLERAFDSF   87 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHH-GGGTCEEEEEECCSSSCGGG-SCS----C--TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCccchhh-hhc----c--CCceEEEeeCCCHHHHHHHHhhc
Confidence            5789999999997 99999999998 46799999998854321100 000    0  0000  001111234667787  


Q ss_pred             cCCEEEEccCCC
Q 022672          144 EADVISLHPVLD  155 (294)
Q Consensus       144 ~aDiV~l~~Plt  155 (294)
                      .+|+|+.+....
T Consensus        88 ~~D~vih~A~~~   99 (330)
T 2pzm_A           88 KPTHVVHSAAAY   99 (330)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCccC
Confidence            899998887543

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.57  E-value=0.065  Score=48.80  Aligned_cols=93  Identities=9%  Similarity=-0.048  Sum_probs=56.0

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHH-HH---h--hc
Q 022672           72 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EV---L--RE  144 (294)
Q Consensus        72 ~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-el---l--~~  144 (294)
                      .|++|.|+| .|.||..+++.+ +..|++|++.+++.... +.. ...       +..........++. ++   .  ..
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~~~-~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~  231 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLT-RMAGAIPLVTAGSQKKL-QMA-EKL-------GAAAGFNYKKEDFSEATLKFTKGAG  231 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHH-HHH-------TCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH-HHH-HHc-------CCcEEEecCChHHHHHHHHHhcCCC
Confidence            578999999 799999999985 78999999999875432 111 111       11000000011222 22   2  14


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .|+++.+... +    . -...+..|+++..+|.++
T Consensus       232 ~d~vi~~~G~-~----~-~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          232 VNLILDCIGG-S----Y-WEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             EEEEEESSCG-G----G-HHHHHHHEEEEEEEEECC
T ss_pred             ceEEEECCCc-h----H-HHHHHHhccCCCEEEEEe
Confidence            6888877752 1    1 245567778888888775

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=94.56  E-value=0.033  Score=48.72  Aligned_cols=39  Identities=21%  Similarity=0.149  Sum_probs=29.1

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|+..+.+..
T Consensus        23 m~~~~k~~lVTGas~GIG~aia~~la-~~G~~Vv~~~~~~~   62 (267)
T 3u5t_A           23 MMETNKVAIVTGASRGIGAAIAARLA-SDGFTVVINYAGKA   62 (267)
T ss_dssp             ----CCEEEEESCSSHHHHHHHHHHH-HHTCEEEEEESSCS
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEcCCCH
Confidence            3578999999987 899999999985 67999988754433

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.56  E-value=0.062  Score=46.76  Aligned_cols=70  Identities=13%  Similarity=0.102  Sum_probs=46.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .++|.|.|.|.||+.+++.| ...|.+|++.+++..... ....        .+..... ....+++  +.++|+|+.+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~-~~~~--------~~~~~~~-~D~~d~~--~~~~d~vi~~a   71 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRAL-APQGWRIIGTSRNPDQME-AIRA--------SGAEPLL-WPGEEPS--LDGVTHLLIST   71 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHH-GGGTCEEEEEESCGGGHH-HHHH--------TTEEEEE-SSSSCCC--CTTCCEEEECC
T ss_pred             cCcEEEECCcHHHHHHHHHH-HHCCCEEEEEEcChhhhh-hHhh--------CCCeEEE-ecccccc--cCCCCEEEECC
Confidence            37899999999999999998 467999999998765421 1110        0100000 0112344  78899998888


Q ss_pred             CCC
Q 022672          153 VLD  155 (294)
Q Consensus       153 Plt  155 (294)
                      ...
T Consensus        72 ~~~   74 (286)
T 3ius_A           72 APD   74 (286)
T ss_dssp             CCB
T ss_pred             Ccc
Confidence            654

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=94.51  E-value=0.15  Score=48.85  Aligned_cols=77  Identities=17%  Similarity=0.257  Sum_probs=45.8

Q ss_pred             CEEEEEcCChHHHHH--HHHHh--hcC---CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           74 QTVGVIGAGRIGSAY--ARMMV--EGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        74 ktvGIIGlG~IG~~v--A~~L~--~~~---g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      .+|+|||.|.+|...  ..-++  ..+   +.+++.+|...... +.... ....+......+..+....+.++.+++||
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl-~~~~~-~~~~~~~~~~~~~~i~~t~d~~eAl~gAD   78 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRL-NASYI-LARKYVEELNSPVKVVKTESLDEAIEGAD   78 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHH-HHHHH-HHHHHHHHHTCCCEEEEESCHHHHHTTCS
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHH-HHHHH-HHHHHHHHcCCCeEEEEeCCHHHHhCCCC
Confidence            379999999988552  12122  123   45899999876532 11111 11111112223344555678999999999


Q ss_pred             EEEEcc
Q 022672          147 VISLHP  152 (294)
Q Consensus       147 iV~l~~  152 (294)
                      ||+++.
T Consensus        79 ~Vi~~~   84 (477)
T 3u95_A           79 FIINTA   84 (477)
T ss_dssp             EEEECC
T ss_pred             EEEECc
Confidence            999885

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=94.49  E-value=0.049  Score=47.49  Aligned_cols=41  Identities=20%  Similarity=0.247  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhH
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  110 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~  110 (294)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|+..+++....
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~-~~G~~V~~~~r~~~~~   66 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLA-SMGLKVWINYRSNAEV   66 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCCHHH
Confidence            4689999999987 899999999984 7899999998865443

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=94.49  E-value=0.069  Score=48.57  Aligned_cols=93  Identities=17%  Similarity=0.162  Sum_probs=57.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cCC
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  146 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~aD  146 (294)
                      ++|.|.|. |.||..+++.+ +..|+ +|++.+++.... +.....+       +..........++.+.+.     ..|
T Consensus       162 ~~vlI~GasggiG~~~~~~a-~~~Ga~~Vi~~~~~~~~~-~~~~~~~-------g~~~~~d~~~~~~~~~~~~~~~~~~d  232 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIG-HFLGCSRVVGICGTHEKC-ILLTSEL-------GFDAAINYKKDNVAEQLRESCPAGVD  232 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHH-HHTTCSEEEEEESCHHHH-HHHHHTS-------CCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred             cEEEEECCCcHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHc-------CCceEEecCchHHHHHHHHhcCCCCC
Confidence            89999998 99999999985 78999 999998875432 1111101       111000001123333222     478


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +++.+...  .    .-...+..++++..+|.++-
T Consensus       233 ~vi~~~G~--~----~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          233 VYFDNVGG--N----ISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             EEEESCCH--H----HHHHHHHTEEEEEEEEECCC
T ss_pred             EEEECCCH--H----HHHHHHHHhccCcEEEEECC
Confidence            88877751  1    12566778888888888754

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=94.49  E-value=0.12  Score=46.28  Aligned_cols=112  Identities=14%  Similarity=0.161  Sum_probs=59.7

Q ss_pred             CEEEEEcCChHHHHHHHHHh-hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~-~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.||+++|-.|+ ++.--++..||...........+-. ....... .........+. +.+++||+|++..
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~-h~~~~~~-~~~~i~~~~d~-~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLA-HAAAGID-KYPKIVGGADY-SLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHH-HHHGGGT-CCCEEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhh-cccccCC-CCCeEecCCCH-HHhCCCCEEEEec
Confidence            47999999999999998763 2344589999987643222211110 0000000 01111122233 4589999999887


Q ss_pred             CC--Cc-ccccc-c--cHH-------HHhcCCCCcEEEEcCCCcccCHHHH
Q 022672          153 VL--DK-TTYHL-I--NKE-------RLATMKKEAILVNCSRGPVIDEVAL  190 (294)
Q Consensus       153 Pl--t~-~t~~l-i--~~~-------~l~~mk~gailIN~aRG~~vd~~aL  190 (294)
                      -.  .| .||-- +  |.+       .+..-.|+++++.++.  .+|.-..
T Consensus        78 G~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN--Pvd~~t~  126 (294)
T 2x0j_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN--PMDVMTY  126 (294)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS--SHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC--cchhhHH
Confidence            42  22 12211 1  221       2334467888888753  4554443

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=94.49  E-value=0.051  Score=46.76  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcC
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDL  105 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~  105 (294)
                      .+.||++.|.|. |.||+++|+.|+ ..|++|++.++
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~-~~G~~V~~~~r   39 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFA-TEKAKVVVNYR   39 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEES
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEcC
Confidence            578999999985 899999999984 67999999988

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=94.48  E-value=0.071  Score=48.56  Aligned_cols=93  Identities=16%  Similarity=0.206  Sum_probs=55.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHH----HHhh--c
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD----EVLR--E  144 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----ell~--~  144 (294)
                      .|++|.|+|. |.||..+++.+ +..|++|++.+++.....  .....       +....-.....++.    +...  .
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~~~~~-------ga~~~~d~~~~~~~~~~~~~~~~~~  239 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEEGQK--IVLQN-------GAHEVFNHREVNYIDKIKKYVGEKG  239 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHHHH--HHHHT-------TCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred             CcCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCChhHHH--HHHHc-------CCCEEEeCCCchHHHHHHHHcCCCC
Confidence            5789999998 99999999985 789999999998754321  11111       11100000011222    2221  4


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .|+|+.+...  .+   + ...++.++++..+|.++
T Consensus       240 ~D~vi~~~G~--~~---~-~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          240 IDIIIEMLAN--VN---L-SKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             EEEEEESCHH--HH---H-HHHHHHEEEEEEEEECC
T ss_pred             cEEEEECCCh--HH---H-HHHHHhccCCCEEEEEe
Confidence            7788777652  11   2 45567777777777775

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=94.46  E-value=0.018  Score=51.74  Aligned_cols=73  Identities=11%  Similarity=0.086  Sum_probs=46.2

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      ..+.+|+|.|.|. |.||+.+++.| ...|.+|++.++........+             .........+++++++++|+
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~-------------~~~Dl~d~~~~~~~~~~~d~   80 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAAL-RTQGRTVRGFDLRPSGTGGEE-------------VVGSLEDGQALSDAIMGVSA   80 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHH-HHTTCCEEEEESSCCSSCCSE-------------EESCTTCHHHHHHHHTTCSE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHH-HhCCCEEEEEeCCCCCCCccE-------------EecCcCCHHHHHHHHhCCCE
Confidence            5689999999998 99999999998 467999999988753200000             00011122357788899999


Q ss_pred             EEEccCCC
Q 022672          148 ISLHPVLD  155 (294)
Q Consensus       148 V~l~~Plt  155 (294)
                      |+.+....
T Consensus        81 vih~A~~~   88 (347)
T 4id9_A           81 VLHLGAFM   88 (347)
T ss_dssp             EEECCCCC
T ss_pred             EEECCccc
Confidence            98877543

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=94.46  E-value=0.8  Score=41.46  Aligned_cols=131  Identities=11%  Similarity=0.016  Sum_probs=81.3

Q ss_pred             HHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEE-----EcCChHH
Q 022672           11 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV-----IGAGRIG   85 (294)
Q Consensus        11 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGI-----IGlG~IG   85 (294)
                      +.++-.+|+|-|.-+....++-  +++=++.+.++.         |    +       ..+. .+|++     +|=+++.
T Consensus       129 ~lA~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~---------g----~-------~~l~-l~ia~a~~~~vGD~rva  185 (324)
T 1js1_X          129 QFIQHSGRPVFSMEAATRHPLQ--SFADLITIEEYK---------K----T-------ARPK-VVMTWAPHPRPLPQAVP  185 (324)
T ss_dssp             HHHHHSSSCEEESSCSSCCHHH--HHHHHHHHHHHC---------S----S-------SSCE-EEEECCCCSSCCCSHHH
T ss_pred             HHHhhCCCCEEECCCCCCCcHH--HHHHHHHHHHHc---------C----C-------CCee-EEEEEEcccccCCcchH
Confidence            3445567999998765444432  233333333211         1    0       1366 89999     9999999


Q ss_pred             HHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC-CC-c-------
Q 022672           86 SAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV-LD-K-------  156 (294)
Q Consensus        86 ~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P-lt-~-------  156 (294)
                      ++.+..+ ..||++|....|..-...+.+.              ..+....+++|.++++|+|..-.= .- .       
T Consensus       186 ~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~--------------~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~~~~~~  250 (324)
T 1js1_X          186 NSFAEWM-NATDYEFVITHPEGYELDPKFV--------------GNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQIL  250 (324)
T ss_dssp             HHHHHHH-HTSSSEEEEECCTTCCCCHHHH--------------TTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCC
T ss_pred             HHHHHHH-HHCCCEEEEeCCcccCCChhhc--------------cceEEECCHHHHhCCCCEEEecCcccCCCccccchH
Confidence            9999986 5899999998874321111100              012345789999999999977322 10 0       


Q ss_pred             --cccccccHHHHhcCCCCcEEEEcC
Q 022672          157 --TTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       157 --~t~~li~~~~l~~mk~gailIN~a  180 (294)
                        .....++.+.++.+| +++|..+.
T Consensus       251 ~r~~~y~vt~e~l~~a~-~ai~MHcL  275 (324)
T 1js1_X          251 STDRNWTVGDRQMAVTN-NAYFMHCL  275 (324)
T ss_dssp             CCCTTSSBCHHHHTTSS-SCEEECCS
T ss_pred             HHhcCcccCHHHHHhcC-CcEEECCC
Confidence              012446777777777 77777764

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=94.42  E-value=0.11  Score=46.91  Aligned_cols=38  Identities=24%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.+|.|+|.|.+|...++.+++..|.+|++.+++..+
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r  200 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDK  200 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHH
Confidence            57899999999999999988644668999999987654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.42  E-value=0.096  Score=47.71  Aligned_cols=95  Identities=18%  Similarity=0.111  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccc----cCCHH----HHh
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR----ASSMD----EVL  142 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~----ell  142 (294)
                      .|++|.|+|.|.+|...++. ++.+|++ |++.+++.... +. ...    +   .........    ..++.    ++.
T Consensus       179 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~-~~-a~~----l---~~~~~~~~~~~~~~~~~~~~v~~~t  248 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLC-AKAAGACPLVITDIDEGRL-KF-AKE----I---CPEVVTHKVERLSAEESAKKIVESF  248 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHH-HHHTTCCSEEEEESCHHHH-HH-HHH----H---CTTCEEEECCSCCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHH-HH-HHH----h---chhcccccccccchHHHHHHHHHHh
Confidence            47899999999999999987 5899997 88888766442 11 111    1   000000000    01122    222


Q ss_pred             --hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          143 --READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       143 --~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                        ...|+|+-++.. +.+    -...+..++++..+|.++-
T Consensus       249 ~g~g~Dvvid~~g~-~~~----~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          249 GGIEPAVALECTGV-ESS----IAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             SSCCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECCC
T ss_pred             CCCCCCEEEECCCC-hHH----HHHHHHHhcCCCEEEEEcc
Confidence              258999998862 222    1566788999999998864

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.42  E-value=0.064  Score=46.70  Aligned_cols=39  Identities=28%  Similarity=0.289  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .+.||++.|.|. |.||+++|+.|+ ..|++|+..+++...
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~-~~G~~V~~~~r~~~~   42 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFA-REGASLVAVDREERL   42 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            478899999987 899999999984 679999999987643

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.42  E-value=0.08  Score=47.00  Aligned_cols=39  Identities=15%  Similarity=0.191  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .+.||++.|.|. |.||+++|+.|+ ..|++|++.+++...
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~-~~G~~V~~~~r~~~~   62 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFA-KEGAQVTITGRNEDR   62 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            488999999986 899999999984 679999999987643

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.39  E-value=0.062  Score=49.35  Aligned_cols=37  Identities=24%  Similarity=0.396  Sum_probs=31.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCC
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  106 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~  106 (294)
                      ..|.+++|.|||+|.+|..+|+.|+ ..|+ ++..+|..
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La-~aGvg~i~lvD~D  151 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILA-TSGIGEIILIDND  151 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEEECC
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-hCCCCeEEEECCC
Confidence            3588999999999999999999985 5565 77788864

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.39  E-value=0.084  Score=46.78  Aligned_cols=75  Identities=11%  Similarity=0.157  Sum_probs=46.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ++|.|.|. |.||+.+++.| ...|.+|++.++...........     +...+...  .+.....++.++++++|+|+.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~~~~-----l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~   85 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGS-LKLGHPTYVFTRPNSSKTTLLDE-----FQSLGAIIVKGELDEHEKLVELMKKVDVVIS   85 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHH-HHTTCCEEEEECTTCSCHHHHHH-----HHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CeEEEECCCchHHHHHHHHH-HHCCCcEEEEECCCCchhhHHHH-----hhcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            58999995 99999999998 46689999888765311111000     00011100  011122457788899999988


Q ss_pred             ccCC
Q 022672          151 HPVL  154 (294)
Q Consensus       151 ~~Pl  154 (294)
                      +.+.
T Consensus        86 ~a~~   89 (318)
T 2r6j_A           86 ALAF   89 (318)
T ss_dssp             CCCG
T ss_pred             CCch
Confidence            8763

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.34  E-value=0.15  Score=48.37  Aligned_cols=87  Identities=16%  Similarity=0.225  Sum_probs=59.4

Q ss_pred             ccCCCEEEEEcCC----------hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHH
Q 022672           70 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  139 (294)
Q Consensus        70 ~l~gktvGIIGlG----------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  139 (294)
                      .+.|++|+|+|+-          .=...+++.| +..|++|.+|||........   .++          .......+++
T Consensus       330 ~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L-~~~Ga~V~~~DP~~~~~~~~---~~~----------~~~~~~~~~~  395 (444)
T 3vtf_A          330 GLRGRHVGVLGLAFKPNTDDVRESRGVEVARLL-LERGARVYVHDPMAMEKARA---VLG----------DSVTYVEDPQ  395 (444)
T ss_dssp             CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECSSTHHHHHH---HHG----------GGSEECSCHH
T ss_pred             ccCCCEEEEEeeecCCCCCccccCcHHHHHHHH-HHCCCEEEEECCCCChHHHH---hcC----------CCceecCCHH
Confidence            5899999999984          1267788887 68999999999986432211   111          1123457899


Q ss_pred             HHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          140 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       140 ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      +.++++|.|++++.- ++-+.+ +      + ++.+++++
T Consensus       396 ~a~~~aDavvi~t~h-~ef~~l-d------~-~~~vv~D~  426 (444)
T 3vtf_A          396 ALLDQVEGVIIATAW-PQYEGL-D------Y-RGKVVVDG  426 (444)
T ss_dssp             HHHHHCSEEEECSCC-GGGGGS-C------C-TTCEEEES
T ss_pred             HHHhCCCEEEEccCC-HHHhCC-C------c-CCCEEEEC
Confidence            999999999999862 222221 1      2 35678885

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.32  E-value=0.06  Score=51.25  Aligned_cols=74  Identities=19%  Similarity=0.324  Sum_probs=46.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~l~  151 (294)
                      .++|-|+|+|.+|+.+|+.| ...|.+|++.|..+.. .+...+.++-..- .|.   . .....|+++ +++||+++.+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L-~~~~~~v~vId~d~~~-~~~~~~~~~~~~i-~Gd---~-~~~~~L~~Agi~~ad~~ia~   75 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENL-VGENNDITIVDKDGDR-LRELQDKYDLRVV-NGH---A-SHPDVLHEAGAQDADMLVAV   75 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHT-CSTTEEEEEEESCHHH-HHHHHHHSSCEEE-ESC---T-TCHHHHHHHTTTTCSEEEEC
T ss_pred             cCEEEEECCCHHHHHHHHHH-HHCCCCEEEEECCHHH-HHHHHHhcCcEEE-EEc---C-CCHHHHHhcCCCcCCEEEEE
Confidence            46799999999999999998 6889999999987653 2222221110000 000   0 011224443 5889998887


Q ss_pred             cC
Q 022672          152 PV  153 (294)
Q Consensus       152 ~P  153 (294)
                      .+
T Consensus        76 t~   77 (461)
T 4g65_A           76 TN   77 (461)
T ss_dssp             CS
T ss_pred             cC
Confidence            76

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.32  E-value=0.052  Score=51.18  Aligned_cols=115  Identities=17%  Similarity=0.146  Sum_probs=68.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV  148 (294)
                      ++.+|+|.|||+|..|.+.|+.| ...|.+|.++|.+.......       .+. .+   ..+. .... .+.+..+|.|
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~~~-------~l~-~G---~~~~~g~~~-~~~~~~~d~v   68 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFF-LARGVTPRVMDTRMTPPGLD-------KLP-EA---VERHTGSLN-DEWLMAADLI   68 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHH-HTTTCCCEEEESSSSCTTGG-------GSC-TT---SCEEESSCC-HHHHHTCSEE
T ss_pred             CCCCCEEEEEeecHHHHHHHHHH-HhCCCEEEEEECCCCcchhH-------Hhh-CC---CEEEECCCc-HHHhccCCEE
Confidence            35788999999999999999887 68899999999765331110       121 12   1111 1112 4556689999


Q ss_pred             EEccCCCcc----------ccccccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          149 SLHPVLDKT----------TYHLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       149 ~l~~Plt~~----------t~~li~~~-~l-~~mk~gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      ++.....++          ...++.+- .+ ..++...+-|--+.|+.--..-|...|++.
T Consensus        69 V~s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~  129 (439)
T 2x5o_A           69 VASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA  129 (439)
T ss_dssp             EECTTSCTTCHHHHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             EeCCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            887432221          11233321 12 234544556655677777555556666553

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=94.31  E-value=0.23  Score=45.45  Aligned_cols=94  Identities=14%  Similarity=0.024  Sum_probs=56.5

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----c
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  144 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  144 (294)
                      -.|++|.|+|. |.+|...++. ++.+|++|++.. +..+ .+ +...+       +....-.....++.+.+.     .
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~ql-a~~~Ga~Vi~~~-~~~~-~~-~~~~l-------Ga~~vi~~~~~~~~~~v~~~t~g~  231 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQM-LRLSGYIPIATC-SPHN-FD-LAKSR-------GAEEVFDYRAPNLAQTIRTYTKNN  231 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHH-HHHTTCEEEEEE-CGGG-HH-HHHHT-------TCSEEEETTSTTHHHHHHHHTTTC
T ss_pred             CCCcEEEEECCCcHHHHHHHHH-HHHCCCEEEEEe-CHHH-HH-HHHHc-------CCcEEEECCCchHHHHHHHHccCC
Confidence            46899999999 8999999987 488999998875 3322 22 11111       211111111123333322     3


Q ss_pred             CCEEEEccCCCccccccccHHHHhcC-CCCcEEEEcC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  180 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~m-k~gailIN~a  180 (294)
                      .|+++-++.. +.+.    ...+..+ +++..+|.++
T Consensus       232 ~d~v~d~~g~-~~~~----~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          232 LRYALDCITN-VEST----TFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCEEEESSCS-HHHH----HHHHHHSCTTCEEEEESS
T ss_pred             ccEEEECCCc-hHHH----HHHHHHhhcCCCEEEEEe
Confidence            7899888762 2221    4456667 6888888875

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.30  E-value=0.13  Score=47.05  Aligned_cols=92  Identities=13%  Similarity=0.151  Sum_probs=56.8

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhhc-CCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----c
Q 022672           72 KGQTVGVIG-AGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  144 (294)
Q Consensus        72 ~gktvGIIG-lG~IG~~vA~~L~~~-~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  144 (294)
                      .|++|.|+| .|.+|...++.+ +. .|.+|++.+++.... +. ..       ..+.... +....++.+.+.     .
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qla-k~~~g~~Vi~~~~~~~~~-~~-~~-------~lGad~v-i~~~~~~~~~v~~~~~~g  239 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIA-RQRTDLTVIATASRPETQ-EW-VK-------SLGAHHV-IDHSKPLAAEVAALGLGA  239 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHH-HHHCCSEEEEECSSHHHH-HH-HH-------HTTCSEE-ECTTSCHHHHHHTTCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHhcCCEEEEEeCCHHHH-HH-HH-------HcCCCEE-EeCCCCHHHHHHHhcCCC
Confidence            688999999 999999999874 66 599999999875432 11 11       1121111 111123333332     5


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      .|+|+-++.. +.+    -...++.++++..+|.+
T Consensus       240 ~Dvvid~~g~-~~~----~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          240 PAFVFSTTHT-DKH----AAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEEECSCH-HHH----HHHHHHHSCTTCEEEEC
T ss_pred             ceEEEECCCc-hhh----HHHHHHHhcCCCEEEEE
Confidence            7888877651 111    14566778888888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	1e-39
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	2e-28
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	6e-28
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	7e-27
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	7e-26
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	9e-16
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	1e-15
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	3e-14
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	4e-11
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	1e-09
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	4e-09
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	7e-09
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	1e-06
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	2e-06
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	2e-05
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	2e-05
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	2e-05
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	5e-05
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	2e-04

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  135 bits (340), Expect = 1e-39
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 27  LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 86
           +T  TAE+A  L L +ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG 
Sbjct: 1   VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 60

Query: 87  AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 146
           A A+   +GF M++ Y+D ++A               ++ E         S+D +L  + 
Sbjct: 61  ALAKRA-QGFDMDIDYFDTHRA--------------SSSDEASYQATFHDSLDSLLSVSQ 105

Query: 147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 206
             SL+      T +  NK  + ++ + AI+VN +RG ++D   +V  L+   +   G DV
Sbjct: 106 FFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDV 165

Query: 207 FEDEPYMKPGLSEMKNAIVVPHIASA 232
           F  EP +  G  ++ N  + PHI SA
Sbjct: 166 FAGEPNINEGYYDLPNTFLFPHIGSA 191

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  105 bits (263), Expect = 2e-28
 Identities = 67/202 (33%), Positives = 97/202 (48%), Gaps = 20/202 (9%)

Query: 28  TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 87
             + AE A +L LAA+R+I  AD  +R      W  + F G  + G+TVGV+G GRIG  
Sbjct: 2   IHSAAEHALALLLAASRQIPAADASLREH---TWKRSSFSGTEIFGKTVGVVGLGRIGQL 58

Query: 88  YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 147
            A+ +   F   ++ YD Y +      +                     S+D++L  AD 
Sbjct: 59  VAQRIAA-FGAYVVAYDPYVSPARAAQLGIE----------------LLSLDDLLARADF 101

Query: 148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 207
           IS+H      T  LI+KE LA  K   I+VN +RG ++DE AL + +    +   GLDVF
Sbjct: 102 ISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF 161

Query: 208 EDEPYMKPGLSEMKNAIVVPHI 229
             EP     L E+   +V PH+
Sbjct: 162 ATEPCTDSPLFELAQVVVTPHL 183

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score =  104 bits (260), Expect = 6e-28
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 22/208 (10%)

Query: 29  ETTAELAASLSLAAARRIVEADEFMRAGLY----DGWLPNLFVGNLLKGQTVGVIGAGRI 84
           E TA+      L   RR     + +R G      +           ++G+T+G+IG GR+
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 85  GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 144
           G A A          L Y                              +R S++ ++L  
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERAL----------------GLQRVSTLQDLLFH 104

Query: 145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 204
           +D ++LH  L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    L
Sbjct: 105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAAL 164

Query: 205 DVFEDEPYMKPG--LSEMKNAIVVPHIA 230
           DV E EP+      L +  N I  PH A
Sbjct: 165 DVHESEPFSFSQGPLKDAPNLICTPHAA 192

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  101 bits (252), Expect = 7e-27
 Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 17/202 (8%)

Query: 30  TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 89
           + AE    + L+  R  + + E+ R G ++     +     L+   VG + AGRIG A  
Sbjct: 2   SVAEHVVMMILSLVRNYLPSHEWARKGGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVL 60

Query: 90  RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 149
           R +   F ++L Y D ++                 + E+ +     ++ +++    DV++
Sbjct: 61  RRL-APFDVHLHYTDRHRLPE--------------SVEKELNLTWHATREDMYPVCDVVT 105

Query: 150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 209
           L+  L   T H+IN E L   K+ A +VN +RG + D  A+   L+   +     DV+  
Sbjct: 106 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 165

Query: 210 EPYMKPG-LSEMKNAIVVPHIA 230
           +P  K      M    + PHI+
Sbjct: 166 QPAPKDHPWRTMPYNGMTPHIS 187

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 99.3 bits (246), Expect = 7e-26
 Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 27/208 (12%)

Query: 28  TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 87
           T + AEL     L   R + EA+     G+ +      F                   + 
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF------------------EAR 43

Query: 88  YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 147
             ++ + G+        +   +          +     G           + ++L  +DV
Sbjct: 44  GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQH----LSDLLNMSDV 99

Query: 148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 207
           +SLH   + +T +++  + ++ MK  ++L+N SRG V+D  AL + L    +    +DVF
Sbjct: 100 VSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF 159

Query: 208 EDEPYMKPG-----LSEMKNAIVVPHIA 230
             EP          L+E  N ++ PHI 
Sbjct: 160 PTEPATNSDPFTSPLAEFDNVLLTPHIG 187

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 72.1 bits (175), Expect = 9e-16
 Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 35/216 (16%)

Query: 29  ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 88
              AE AA  +    R+    DE +             +G  ++ Q VGV+G G IG  +
Sbjct: 2   NAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVGTGHIGQVF 58

Query: 89  ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148
            ++M       + Y                                  S+D++ ++ADVI
Sbjct: 59  MQIMEGFGAKVITYDIFRNPE------------------LEKKGYYVDSLDDLYKQADVI 100

Query: 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 208
           SLH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F   +DV+E
Sbjct: 101 SLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE 160

Query: 209 DEPYMKPG--------------LSEMKNAIVVPHIA 230
            E  +                 L    N +V P  A
Sbjct: 161 GEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTA 196

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 71.4 bits (173), Expect = 1e-15
 Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 35/217 (16%)

Query: 28  TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 87
               AE A + +L   R + +    ++AG Y+     +       GQ    +        
Sbjct: 2   PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKEL---GQQTVGVMGTGHIGQ 58

Query: 88  YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 147
            A  + +GF   +I YD Y                              S++++ +++DV
Sbjct: 59  VAIKLFKGFGAKVIAYDPYPMKGDHP------------------DFDYVSLEDLFKQSDV 100

Query: 148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 207
           I LH    +   H+IN+     MK  AI++N +R  +ID  A++ +LK   +  VG+D +
Sbjct: 101 IDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY 160

Query: 208 EDEPYMKPG--------------LSEMKNAIVVPHIA 230
           E E                    L  M N ++ PHIA
Sbjct: 161 EYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA 197

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 67.5 bits (163), Expect = 3e-14
 Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 29  ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 88
           +  AE A +L LA  +RI++  E M+ G Y   +        L       +         
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE-----IPLIQGEKVAVLGLGEIGTR 56

Query: 89  ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 148
              ++      +  +                        +   W+  +S++E LREA   
Sbjct: 57  VGKILAALGAQVRGFSRTP--------------------KEGPWRFTNSLEEALREARAA 96

Query: 149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 208
                L+K T  L+  + LA M ++A+ VN  R  V+D   ++  LK+ P F    DV+ 
Sbjct: 97  VCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWW 156

Query: 209 DEPYMKPG--LSEMKNAIVVPHIA 230
                        + N +  P +A
Sbjct: 157 GRNDFAKDAEFFSLPNVVATPWVA 180

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 57.5 bits (138), Expect = 4e-11
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
             VG +NVDV+AA   G+ V N P   +   A+  A   +A + R+  A EF+   +  G
Sbjct: 71  AGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVG 130

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 1e-09
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 21/142 (14%)

Query: 68  GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 127
             ++ G+   V G G +G   A+ +  GF   +I  ++     L+  +   G        
Sbjct: 19  DVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAM--EGY------- 68

Query: 128 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVID 186
                   ++MDE  +E ++             +I       MK +AI+ N       ID
Sbjct: 69  ------EVTTMDEACQEGNIFVTTT----GCIDIILGRHFEQMKDDAIVCNIGHFDVEID 118

Query: 187 EVALVEHLKQNPMFRVGLDVFE 208
              L E+  +    +  +D + 
Sbjct: 119 VKWLNENAVEKVNIKPQVDRYR 140

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 51.5 bits (123), Expect = 4e-09
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD 50
            ++G++++D++A    GI VGN P   T+   ++A   +         AD
Sbjct: 74  YSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFGGAD 123

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 51.2 bits (122), Expect = 7e-09
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG 56
             VG +N+D+ A  +YGI + N P         +           + + +      
Sbjct: 75  RNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGETSTEVT 130

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 8/66 (12%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELA--------ASLSLAAARRIVEADEF 52
             +G ++VD+ +A    + V       + T    A                R I +    
Sbjct: 120 AGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLI 179

Query: 53  MRAGLY 58
           ++ G  
Sbjct: 180 VQGGAL 185

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI 46
             VG +N+D+  A + G  + N P     +    A    +  A   
Sbjct: 76  RNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDN 118

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 7/90 (7%), Positives = 18/90 (20%), Gaps = 31/90 (34%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 60
           +  G +++   +     + V    G        +   + + A R                
Sbjct: 57  VTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVR---------------- 99

Query: 61  WLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 90
                          +     G      A+
Sbjct: 100 --------------NLITYATGGRPRNIAK 115

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG 56
            A+G N VD++AA K GI V N P   T+   E           +  +    + A 
Sbjct: 76  FAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 131

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG 56
           +  G++N+D+ +A   GIAV N P     +  + +  +   AAR I  A       
Sbjct: 72  IGSGFDNIDIKSAGDLGIAVCNVPAASVYS-EQASIEMREEAAREIRRAITGRIPD 126

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.7 bits (92), Expect = 5e-05
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 16/109 (14%)

Query: 71  LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 130
           L+ +   ++G G +    AR+++E                    +T              
Sbjct: 10  LRDRDCLIVGGGDVAERKARLLLE----------------AGARLTVNALTFIPQFTVWA 53

Query: 131 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 179
                + ++    E  + S    +  T    +N+      +   I  N 
Sbjct: 54  NEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV 102

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 7/146 (4%)

Query: 76  VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 134
           VGV+G G +G+  A  + E GFK  +  ++   + + E+F+ A      A   +      
Sbjct: 4   VGVVGLGVMGANLALNIAEKGFK--VAVFNRTYS-KSEEFMKANASAPFAGNLKAFETME 60

Query: 135 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 194
            +    + +    + L      T   +         +K  ILV+       D+    + L
Sbjct: 61  -AFAASLKKPRKALILVQAGAATDSTIEQ--LKKVFEKGDILVDTGNAHFKDQGRRAQQL 117

Query: 195 KQNPMFRVGLDVFEDEPYMKPGLSEM 220
           +   +  +G+ +   E   + G +  
Sbjct: 118 EAAGLRFLGMGISGGEEGARKGPAFF 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.69
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.56
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.5
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.47
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.46
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.45
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.41
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.37
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.36
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.27
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.24
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.15
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.1
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.09
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.02
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.01
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.0
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.0
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.9
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	98.84
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.81
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.8
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.61
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.6
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.57
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.56
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.55
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.44
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.39
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.39
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.3
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.26
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.24
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.19
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.19
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.15
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.05
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.02
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.01
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.94
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.91
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.88
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.82
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.81
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.78
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.63
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.61
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.59
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.55
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.53
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.53
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.52
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.5
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.5
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.46
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.43
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.41
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.38
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.37
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.35
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.35
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.33
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.33
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.32
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.29
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.25
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.23
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	97.23
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.22
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.2
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.2
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.13
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.13
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	97.12
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.09
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.07
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.06
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	97.02
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.96
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.93
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	96.92
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.89
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.89
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.88
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.86
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.82
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.79
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.76
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.73
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.72
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.72
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.72
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.72
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.72
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.69
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.69
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.68
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.65
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.59
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	96.56
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	96.48
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.46
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.41
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	96.39
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.33
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	96.23
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	96.23
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	96.17
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.17
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	96.15
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.08
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.06
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	96.04
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.04
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.01
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.0
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.98
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	95.97
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	95.95
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	95.85
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.74
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.64
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.64
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.61
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.59
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	95.57
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.57
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	95.55
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.51
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.5
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.5
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.43
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.38
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.35
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.33
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	95.33
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.29
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.22
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.22
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.2
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.15
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.14
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.12
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.07
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	95.03
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	95.03
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.91
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	94.84
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.77
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.75
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.62
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	94.61
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.55
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.43
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.43
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.41
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	94.41
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	94.32
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	94.3
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.28
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.28
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.27
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.26
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.24
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.19
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.14
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.13
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.09
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.99
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	93.93
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.93
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.88
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.85
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	93.83
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	93.81
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.79
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	93.76
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.73
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	93.67
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.55
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	93.55
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.54
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.44
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	93.4
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	93.4
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	93.4
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	93.38
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.38
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.29
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.28
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.28
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	93.26
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.25
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.24
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.2
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.16
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.07
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.02
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	92.96
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.92
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.86
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	92.79
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.71
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	92.66
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.6
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.58
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	92.57
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	92.54
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	92.53
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.4
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	92.32
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.28
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	92.27
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.19
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.98
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	91.94
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	91.94
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	91.91
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.65
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	91.44
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.42
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	91.29
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.18
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	91.17
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	91.16
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.13
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	91.11
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	91.07
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	91.06
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	91.01
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	90.96
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	90.94
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	90.85
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.79
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	90.67
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	90.54
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.4
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.32
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	90.26
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	90.22
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.03
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	89.99
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	89.95
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	89.88
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	89.78
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	89.54
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.53
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	89.5
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	89.38
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.34
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	89.28
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	89.05
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	88.86
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	88.67
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.67
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	88.62
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.59
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	88.52
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	88.43
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.33
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.96
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	87.96
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.75
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	87.59
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	86.67
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	86.51
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	86.38
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	86.05
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	85.69
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	85.69
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	85.24
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	84.95
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	84.73
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.68
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	84.42
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	84.12
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	83.78
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	83.73
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	83.44
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	83.17
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	83.06
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	82.82
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	82.29
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	82.11
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	81.95
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	81.89
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	81.86
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	81.75
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	81.59
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	81.45
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	81.33
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	81.23
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	81.18
d1xk7a1	402	Crotonobetainyl-CoA:carnitine CoA-transferase, Cai	81.17
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	81.06
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	80.89
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	80.22
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	80.16

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=8.2e-55  Score=372.09  Aligned_cols=190  Identities=33%  Similarity=0.537  Sum_probs=172.9

Q ss_pred             cchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           28 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        28 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      +.+|||+++++||++.|+++++++.+++|.|.+|.+....+.+++|+|+||||+|+||+.+|+++ ++|||+|++||++.
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   80 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDYFDTHR   80 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHH-Hhhccccccccccc
Confidence            46899999999999999999999999999999998777778999999999999999999999997 79999999999876


Q ss_pred             hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCH
Q 022672          108 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      ........              .......++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||+
T Consensus        81 ~~~~~~~~--------------~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde  146 (191)
T d1gdha1          81 ASSSDEAS--------------YQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDN  146 (191)
T ss_dssp             CCHHHHHH--------------HTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCH
T ss_pred             cccchhhc--------------ccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhh
Confidence            53322111              0112346899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCCC
Q 022672          188 VALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASA  232 (294)
Q Consensus       188 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~~  232 (294)
                      +||+++|++|+|.||+||||++||.+++|||++|||++|||+|++
T Consensus       147 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         147 ELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             HHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred             HHHHHHHHcCCceEEEEECCCCCCCCCchHHcCCCEEECCccccC
Confidence            999999999999999999999999888899999999999999974

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.6e-54  Score=367.16  Aligned_cols=184  Identities=36%  Similarity=0.514  Sum_probs=166.6

Q ss_pred             CcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           27 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        27 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      |+.+||||+++++|++.|+++.+++.++++.|+.   ..+.+.++.||++||+|+|.||+.+|+++ ++|||+|++||++
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~---~~~~~~~l~~k~vgiiG~G~IG~~va~~~-~~fg~~v~~~d~~   76 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKR---SSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYDPY   76 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCG---GGCCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECTT
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCc---cccccccccceeeeeccccchhHHHHHHh-hhccceEEeecCC
Confidence            5789999999999999999999999999998752   33457899999999999999999999996 8999999999998


Q ss_pred             chhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 022672          107 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  186 (294)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  186 (294)
                      ........               . .....+++|++++||+|++|+|+|++|+++||++.|+.||++++|||+|||++||
T Consensus        77 ~~~~~~~~---------------~-~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVd  140 (184)
T d1ygya1          77 VSPARAAQ---------------L-GIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVD  140 (184)
T ss_dssp             SCHHHHHH---------------H-TCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBC
T ss_pred             CChhHHhh---------------c-CceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhh
Confidence            65432210               0 0124689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCC
Q 022672          187 EVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  230 (294)
Q Consensus       187 ~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia  230 (294)
                      ++||+++|++|+|+||+||||++||++++|||++|||++|||||
T Consensus       141 e~aL~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         141 EAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             HHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred             hHHHHHHHhcCcEeEEEEeCCCCCCCCCchHhcCCCEEECCCCC
Confidence            99999999999999999999999999989999999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=7e-53  Score=360.53  Aligned_cols=187  Identities=32%  Similarity=0.483  Sum_probs=166.4

Q ss_pred             chHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCC----CcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEc
Q 022672           29 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP----NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  104 (294)
Q Consensus        29 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~----~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d  104 (294)
                      ++|||++++++|++.|+++..++.+++|.|.++..    ....+.+|+||||||||+|+||+.+|+++ ++|||+|++||
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l-~~fg~~v~~~d   79 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KAFGFNVLFYD   79 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEC
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeee-eccccceeecc
Confidence            58999999999999999999999999999864321    12357899999999999999999999997 79999999999


Q ss_pred             CCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          105 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                      ++........               .+.....++++++++||+|++|+|+|++|+++|+++.|+.||++++|||+|||++
T Consensus        80 ~~~~~~~~~~---------------~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~i  144 (193)
T d1mx3a1          80 PYLSDGVERA---------------LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL  144 (193)
T ss_dssp             TTSCTTHHHH---------------HTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTS
T ss_pred             Ccccccchhh---------------hccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceE
Confidence            9765432211               1123457899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHcCCcceEEeeCCCCCCCC--CCCccCCCCeEEccCCCC
Q 022672          185 IDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIAS  231 (294)
Q Consensus       185 vd~~aL~~aL~~g~i~ga~lDV~~~EP~~--~~~L~~~~nviiTPHia~  231 (294)
                      ||++||+++|++|++.||+||||++||++  ++|||++|||++|||+|+
T Consensus       145 vde~aL~~aL~~~~i~~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         145 VDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EcHHHHHHHHHcCCceEEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            99999999999999999999999999986  369999999999999986

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=1.6e-52  Score=360.16  Aligned_cols=184  Identities=32%  Similarity=0.469  Sum_probs=164.0

Q ss_pred             cchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           28 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        28 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      .++||||+++++|++.|+++.+++.+++|.|..+  ..+.|++|.||||||||+|+||+.+|++| ++|||+|++||++.
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~--~~~~~~~l~~ktvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   78 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKA--GTFIGKELGQQTVGVMGTGHIGQVAIKLF-KGFGAKVIAYDPYP   78 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHH--TCCCCCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcc--cCcccccccceeeeeeecccccccccccc-cccceeeeccCCcc
Confidence            4689999999999999999999999999998532  22457899999999999999999999997 89999999999976


Q ss_pred             hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCH
Q 022672          108 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      .....               .   .....++++++++||+|++|+|+|++|+++|+++.|+.||++++|||+|||++||+
T Consensus        79 ~~~~~---------------~---~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde  140 (199)
T d1dxya1          79 MKGDH---------------P---DFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT  140 (199)
T ss_dssp             CSSCC---------------T---TCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCH
T ss_pred             chhhh---------------c---chhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhh
Confidence            43110               0   12346899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcceEEeeCCCCCCCC----------C----CCccCCCCeEEccCCCCC
Q 022672          188 VALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVVPHIASA  232 (294)
Q Consensus       188 ~aL~~aL~~g~i~ga~lDV~~~EP~~----------~----~~L~~~~nviiTPHia~~  232 (294)
                      +||+++|++|+|.||+||||++||++          .    ++||.+|||++|||+|||
T Consensus       141 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         141 QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             HHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             HHHHHHHhcCCcceEeccccCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            99999999999999999999999962          1    368899999999999996

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=7e-52  Score=353.40  Aligned_cols=186  Identities=26%  Similarity=0.323  Sum_probs=165.2

Q ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           30 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        30 ~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      +||||+++++|++.|++..++..+++|.|+.+. ....+.+|.|+++||||+|+||+.+|++| ++|||+|++||+....
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~~~~   79 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIAD-CVSHAYDLEAMHVGTVAAGRIGLAVLRRL-APFDVHLHYTDRHRLP   79 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH-HHTTCCCCTTCEEEEECCSHHHHHHHHHH-GGGTCEEEEECSSCCC
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcc-cCCcceeccccceeeccccccchhhhhhh-hccCceEEEEeecccc
Confidence            799999999999999999999999999986432 12346789999999999999999999997 7999999999987543


Q ss_pred             HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 022672          110 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA  189 (294)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~a  189 (294)
                      ......              .......++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++|
T Consensus        80 ~~~~~~--------------~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~a  145 (188)
T d2naca1          80 ESVEKE--------------LNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDA  145 (188)
T ss_dssp             HHHHHH--------------HTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHH
T ss_pred             cccccc--------------ccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHH
Confidence            211100              112345789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcceEEeeCCCCCCCCC-CCccCCCCeEEccCCCC
Q 022672          190 LVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIAS  231 (294)
Q Consensus       190 L~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nviiTPHia~  231 (294)
                      |+++|++|++.||+||||++||++. +|||++||+++|||+||
T Consensus       146 L~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         146 VARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             HHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             HHHHHhCCCceeEEEeCCCCCCCCCCChHHcCCCeEEccccCc
Confidence            9999999999999999999999975 79999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=9.9e-52  Score=354.30  Aligned_cols=182  Identities=35%  Similarity=0.566  Sum_probs=163.6

Q ss_pred             chHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           29 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        29 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      ++||||+++++|++.|+++..++.++++.|. |.+  ..|++|+||||||||+|+||+.+|++| ++|||+|++||++..
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~-w~~--~~g~el~gk~vgIiG~G~IG~~va~~l-~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRN   77 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCC-cCC--CcCccccCCeEEEecccccchhHHHhH-hhhcccccccCcccc
Confidence            5899999999999999999999999999885 765  358899999999999999999999997 899999999998865


Q ss_pred             hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHH
Q 022672          109 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  188 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~  188 (294)
                      .....           .      .....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++
T Consensus        78 ~~~~~-----------~------~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~  140 (197)
T d1j4aa1          78 PELEK-----------K------GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTD  140 (197)
T ss_dssp             HHHHH-----------T------TCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHH
T ss_pred             ccccc-----------c------eeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhH
Confidence            43211           0      123468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCcceEEeeCCCCCCCC-------------C-CCccCCCCeEEccCCCC
Q 022672          189 ALVEHLKQNPMFRVGLDVFEDEPYM-------------K-PGLSEMKNAIVVPHIAS  231 (294)
Q Consensus       189 aL~~aL~~g~i~ga~lDV~~~EP~~-------------~-~~L~~~~nviiTPHia~  231 (294)
                      ||+++|++|+++||+||||++||..             . +|||.+|||++|||+|+
T Consensus       141 aL~~aL~~~~i~~a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         141 AVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             HHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             HHHHHHhcccchheeeeccccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            9999999999999999999999742             1 36899999999999986

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.4e-51  Score=347.88  Aligned_cols=183  Identities=28%  Similarity=0.438  Sum_probs=157.0

Q ss_pred             CcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           27 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        27 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      |+++||||+++++|++.|+++.++..++++.|.++.   ..+.+|.|++|||||+|.||+.+|+++ ++|||+|++||+.
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~---~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~   76 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA---AGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIE   76 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccc---cccccccceEEEEeecccchhhhhhhc-ccccceEeecccc
Confidence            678999999999999999999999999999876432   346789999999999999999999997 8999999999987


Q ss_pred             chhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 022672          107 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  186 (294)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  186 (294)
                      .....                  .......+++|++++||+|++|+|+|++|+++||++.|+.||++++|||+|||++||
T Consensus        77 ~~~~~------------------~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvd  138 (188)
T d1sc6a1          77 NKLPL------------------GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD  138 (188)
T ss_dssp             CCCCC------------------TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBC
T ss_pred             ccchh------------------hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhh
Confidence            54311                  112345689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcceEEeeCCCCCCCC-----CCCccCCCCeEEccCCCC
Q 022672          187 EVALVEHLKQNPMFRVGLDVFEDEPYM-----KPGLSEMKNAIVVPHIAS  231 (294)
Q Consensus       187 ~~aL~~aL~~g~i~ga~lDV~~~EP~~-----~~~L~~~~nviiTPHia~  231 (294)
                      ++||+++|+++++.+|+||||++||..     .+|||++|||++|||+||
T Consensus       139 e~aL~~aL~~~~~~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         139 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             HHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             hHHHHHHHHcCCceEEEEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            999999999999999999999999973     248999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=1.8e-50  Score=342.33  Aligned_cols=179  Identities=28%  Similarity=0.452  Sum_probs=160.4

Q ss_pred             cchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           28 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        28 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      +++||||+++++|++.|+++.+++.++++.|.+..    ...+|.||||||||+|.||+.+|+++ ++|||+|++||++.
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~----~~~~l~gk~vgIiG~G~IG~~va~~l-~~~g~~v~~~d~~~   75 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV----EIPLIQGEKVAVLGLGEIGTRVGKIL-AALGAQVRGFSRTP   75 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS----CCCCCTTCEEEEESCSTHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC----CCCcccCceEEEeccccccccceeee-eccccccccccccc
Confidence            47899999999999999999999999999875321    22479999999999999999999997 89999999999876


Q ss_pred             hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCH
Q 022672          108 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      ...                    ......+++|++++||+|++|+|+|++|+++|+++.|+.||++++|||+|||++||+
T Consensus        76 ~~~--------------------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~  135 (181)
T d1qp8a1          76 KEG--------------------PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDR  135 (181)
T ss_dssp             CCS--------------------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCH
T ss_pred             ccc--------------------ceeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccc
Confidence            421                    012346899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcceEEeeCCCCCC-CCC-CCccCCCCeEEccCCCC
Q 022672          188 VALVEHLKQNPMFRVGLDVFEDEP-YMK-PGLSEMKNAIVVPHIAS  231 (294)
Q Consensus       188 ~aL~~aL~~g~i~ga~lDV~~~EP-~~~-~~L~~~~nviiTPHia~  231 (294)
                      +||+++|++|++.+|++|||+.|| ++. +|||++|||++|||+||
T Consensus       136 ~aL~~aL~~~~i~~aalDV~~~e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         136 DGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             HHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             hhhhhhcccCcEEEEEEecCCCCCCCCCCChHHcCCCEEeccccCc
Confidence            999999999999999999998765 443 68999999999999997

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.4e-17  Score=133.55  Aligned_cols=109  Identities=23%  Similarity=0.353  Sum_probs=92.2

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      +..|.||+++|+|||.||+.+|+++ ++|||+|++||+.+....+...++|               ...+++++++.+|+
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~-rg~G~~V~v~e~dp~~al~A~~dG~---------------~v~~~~~a~~~adi   82 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAMEGY---------------EVTTMDEACQEGNI   82 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTC---------------EECCHHHHTTTCSE
T ss_pred             CceecCCEEEEeccccccHHHHHHH-HhCCCeeEeeecccchhHHhhcCce---------------EeeehhhhhhhccE
Confidence            3579999999999999999999997 8999999999998876655544322               34689999999999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHc
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS-RGPVIDEVALVEHLKQ  196 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~a-RG~~vd~~aL~~aL~~  196 (294)
                      ++.+..    ++++|+.+.|+.||+|+++.|++ +..-||.++|.+...+
T Consensus        83 vvtaTG----n~~vI~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~  128 (163)
T d1li4a1          83 FVTTTG----CIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVE  128 (163)
T ss_dssp             EEECSS----CSCSBCHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSE
T ss_pred             EEecCC----CccchhHHHHHhccCCeEEEEeccccceecHHHHhhccce
Confidence            988864    78899999999999999999986 6667999999875433

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=4.3e-16  Score=123.23  Aligned_cols=58  Identities=33%  Similarity=0.437  Sum_probs=54.5

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCC
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY   58 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~   58 (294)
                      +|+||||||+++|+++||.|+|+||+++.+|||+++++||++.|++..+++++|+|.|
T Consensus        71 ~g~G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~  128 (130)
T d1ygya2          71 AGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  128 (130)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             ecccccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCcc
Confidence            5899999999999999999999999999999999999999999999988877777765

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.50  E-value=8.1e-17  Score=125.85  Aligned_cols=65  Identities=11%  Similarity=0.116  Sum_probs=59.3

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG   80 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIG   80 (294)
                      .|+|+||+|+++++ +||.|+|++|+++.+||||+++++|++.|                              +++|+|
T Consensus        57 ~~aG~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r------------------------------~l~i~G  105 (121)
T d1qp8a2          57 VTAGLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVR------------------------------NLITYA  105 (121)
T ss_dssp             SSSCCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHH------------------------------HHHHHH
T ss_pred             cccCcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcC------------------------------CEEEEc
Confidence            48999999999985 69999999999999999999999999987                              258999


Q ss_pred             CChHHHHHHHHHhhcCC
Q 022672           81 AGRIGSAYARMMVEGFK   97 (294)
Q Consensus        81 lG~IG~~vA~~L~~~~g   97 (294)
                      +|.||+++|+|+ ++||
T Consensus       106 ~G~iG~~iA~r~-~a~G  121 (121)
T d1qp8a2         106 TGGRPRNIAKRE-DYIG  121 (121)
T ss_dssp             TTSCCSCBCCGG-GTC-
T ss_pred             CCHHHHHHHHHH-HhcC
Confidence            999999999995 8887

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.47  E-value=1.4e-13  Score=111.41  Aligned_cols=103  Identities=20%  Similarity=0.321  Sum_probs=86.6

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ..+.||++.|+|||.+|+.+|+++ +++|++|++++..+-..++...++|               ...+++|+++.+|++
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~-rg~Ga~V~V~E~DPi~alqA~mdGf---------------~v~~~~~a~~~aDi~   82 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQAVMEGF---------------NVVTLDEIVDKGDFF   82 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHHTTTC---------------EECCHHHHTTTCSEE
T ss_pred             ceecCCEEEEecccccchhHHHHH-HhCCCEEEEEecCchhhHHHHhcCC---------------ccCchhHccccCcEE
Confidence            469999999999999999999997 8999999999988766555433322               347899999999999


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALV  191 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-vd~~aL~  191 (294)
                      +.+..    .+++|+.+.|..||+|+++.|++.-.. ||.++|.
T Consensus        83 vTaTG----n~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~  122 (163)
T d1v8ba1          83 ITCTG----NVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELF  122 (163)
T ss_dssp             EECCS----SSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred             EEcCC----CCccccHHHHHHhhCCeEEEeccccchhhhhHHHH
Confidence            99987    466899999999999999999988765 6666554

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.46  E-value=5.9e-14  Score=114.38  Aligned_cols=112  Identities=17%  Similarity=0.195  Sum_probs=91.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||+.+|++| ...|.+|++||++++.. +.+..        .+     .....+.+|++++||+|++|+|
T Consensus         1 MkIgiIGlG~MG~~~A~~L-~~~G~~V~~~d~~~~~~-~~~~~--------~~-----~~~~~~~~e~~~~~d~ii~~v~   65 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVSDRNPEAI-ADVIA--------AG-----AETASTAKAIAEQCDVIITMLP   65 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHH--------TT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEehhHHHHHHHHHH-HHCCCeEEEEeCCcchh-HHHHH--------hh-----hhhcccHHHHHhCCCeEEEEcC
Confidence            4799999999999999998 47899999999987643 22221        11     2345789999999999999999


Q ss_pred             CCcccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          154 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       154 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ..++.+.++.  ...+..+++|.++|+++....-....+.+.+++..+.
T Consensus        66 ~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~  114 (161)
T d1vpda2          66 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVE  114 (161)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             CHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            8887777662  4578889999999999999998889999999887654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.45  E-value=5.6e-13  Score=108.57  Aligned_cols=143  Identities=16%  Similarity=0.098  Sum_probs=93.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||+++|+.| +..|.+|++||++.... +...        ..+...   .. .+..+.+++||+|++++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l-~~~g~~V~~~d~~~~~~-~~a~--------~~~~~~---~~-~~~~~~~~~~DiIilavp   66 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTC-EKAV--------ERQLVD---EA-GQDLSLLQTAKIIFLCTP   66 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHH--------HTTSCS---EE-ESCGGGGTTCSEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCEEEEEECCchHH-HHHH--------Hhhccc---ee-eeecccccccccccccCc
Confidence            4799999999999999998 68899999999986542 2211        111111   11 233367899999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCC-CCC-CCCccCCCCeEEccCCCC
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-PYM-KPGLSEMKNAIVVPHIAS  231 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~E-P~~-~~~L~~~~nviiTPHia~  231 (294)
                      . ..+..++ ++....+++++++++++......... ...+....+..-.+...+.. |.. .+.|+....+++||+-++
T Consensus        67 ~-~~~~~vl-~~l~~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~  143 (165)
T d2f1ka2          67 I-QLILPTL-EKLIPHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT  143 (165)
T ss_dssp             H-HHHHHHH-HHHGGGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC
T ss_pred             H-hhhhhhh-hhhhhhcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCC
Confidence            3 4566666 56778899999999998665433333 33444433333333322222 111 235777788999998665


Q ss_pred             Cc
Q 022672          232 AS  233 (294)
Q Consensus       232 ~t  233 (294)
                      ..
T Consensus       144 ~~  145 (165)
T d2f1ka2         144 DP  145 (165)
T ss_dssp             CH
T ss_pred             CH
Confidence            43

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.41  E-value=1.8e-14  Score=113.74  Aligned_cols=50  Identities=20%  Similarity=0.334  Sum_probs=47.0

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHH
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD   50 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~   50 (294)
                      +|+||||||+++|+++||.|+|+||+++.+||||+++++|++.|++..++
T Consensus        75 ~~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~  124 (131)
T d1dxya2          75 RNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE  124 (131)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             cccccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHH
Confidence            48999999999999999999999999999999999999999999886553

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.37  E-value=6.2e-12  Score=102.56  Aligned_cols=144  Identities=18%  Similarity=0.161  Sum_probs=99.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-HhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV~l~  151 (294)
                      |+|+|||+|.||.++|+.|.+ ++..+|++||++.......         ...+...   ....+.++ ....+|+|++|
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a---------~~~~~~~---~~~~~~~~~~~~~~dlIila   69 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA---------VDLGIID---EGTTSIAKVEDFSPDFVMLS   69 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH---------HHTTSCS---EEESCGGGGGGTCCSEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHH---------HHhhcch---hhhhhhhhhhcccccccccc
Confidence            579999999999999999842 2346899999986543211         1111111   12233333 33589999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCC-CC-CCCCccCCCCeEEccCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-PY-MKPGLSEMKNAIVVPHI  229 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~E-P~-~~~~L~~~~nviiTPHi  229 (294)
                      +|. .++..++ .+....+++++++++++.....-.+++.+.+....+.+.-+...+.. |. ....|++-.++++|||-
T Consensus        70 ~p~-~~~~~vl-~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~  147 (171)
T d2g5ca2          70 SPV-RTFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTK  147 (171)
T ss_dssp             SCH-HHHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCS
T ss_pred             CCc-hhhhhhh-hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCC
Confidence            993 4455555 55677899999999999877766677777777766777766665543 22 22458888999999996


Q ss_pred             CC
Q 022672          230 AS  231 (294)
Q Consensus       230 a~  231 (294)
                      ..
T Consensus       148 ~~  149 (171)
T d2g5ca2         148 KT  149 (171)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.36  E-value=8e-13  Score=107.68  Aligned_cols=116  Identities=19%  Similarity=0.202  Sum_probs=92.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||.++|++| ...|.+|.+||++.+... .+..        .     +.....++.|++..+|+|++|+|
T Consensus         2 ~kIg~IGlG~MG~~iA~~L-~~~g~~v~~~d~~~~~~~-~~~~--------~-----~~~~~~~~~e~~~~~diii~~v~   66 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNL-LKAGYLLNVFDLVQSAVD-GLVA--------A-----GASAARSARDAVQGADVVISMLP   66 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSSHHHHH-HHHH--------T-----TCEECSSHHHHHTSCSEEEECCS
T ss_pred             CEEEEEEEHHHHHHHHHHH-HHCCCeEEEEECchhhhh-hhhh--------h-----hccccchhhhhccccCeeeeccc
Confidence            5799999999999999998 467999999999876532 2111        1     12344689999999999999999


Q ss_pred             CCcccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeC
Q 022672          154 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  206 (294)
Q Consensus       154 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV  206 (294)
                      ..+..+.++.  ...+..+++|.++||++....-+...+.+.+++..+.  .+|.
T Consensus        67 ~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          67 ASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             CHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             chhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            7777666552  4467889999999999999999999999999887654  4564

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.27  E-value=7.7e-13  Score=104.40  Aligned_cols=48  Identities=31%  Similarity=0.523  Sum_probs=45.1

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHH
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA   49 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~   49 (294)
                      +|+||||||+++|+++||.|+|+||+++ ++|||+++++|++.|+++++
T Consensus        72 ~g~G~d~iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a  119 (133)
T d1mx3a2          72 IGSGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRA  119 (133)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcccEeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHH
Confidence            5899999999999999999999999988 47999999999999999766

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.24  E-value=1.1e-11  Score=101.95  Aligned_cols=123  Identities=13%  Similarity=0.185  Sum_probs=90.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .++|||||+|.||..||++| ...|.+|++||++++.. +.+....     .......+.....++.+.+..+|.+++++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSKV-DDFLANE-----AKGTKVLGAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHHH-HHHHHTT-----TTTSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CCcEEEEeEhHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHHhc-----cccccccchhhhhhhhhhhcccceEEEec
Confidence            35799999999999999998 46799999999987653 2222110     00011112222345667788899999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  205 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lD  205 (294)
                      |..+.+...+ .+.+..+++|.++|+++....-+...+.+.+.+..+.  .+|
T Consensus        75 ~~~~~v~~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~ld  124 (176)
T d2pgda2          75 KAGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVG  124 (176)
T ss_dssp             CTTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             CchHHHHHHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eec
Confidence            9777666654 6788899999999999999999999999999887554  445

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.15  E-value=8.9e-12  Score=98.43  Aligned_cols=52  Identities=21%  Similarity=0.221  Sum_probs=44.9

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHHHHHHcCCC
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY   58 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~   58 (294)
                      .|+||||||+++|+++||.|||+|++   ++||+++++||++.|++   +..+.+|+|
T Consensus        76 ~~vG~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~---~~~~~~~k~  127 (134)
T d1j4aa2          76 RNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDN---NLELVEGKE  127 (134)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHH---HHHHHTTCC
T ss_pred             ccCCcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHH---hHHHhhhhc
Confidence            48999999999999999999999998   47899999999999976   445556654

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=1.1e-11  Score=97.71  Aligned_cols=48  Identities=35%  Similarity=0.357  Sum_probs=40.2

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhcCchHHH
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD   50 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~   50 (294)
                      +|+||||||+++|+++||.|+|+||+++.+|||+++.+|+  .|.+..++
T Consensus        76 ~gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d  123 (132)
T d1sc6a2          76 FAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSD  123 (132)
T ss_dssp             CSSCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHH
T ss_pred             ecccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHh
Confidence            5899999999999999999999999999999998665554  44444444

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.09  E-value=2.5e-11  Score=95.16  Aligned_cols=44  Identities=25%  Similarity=0.481  Sum_probs=38.1

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHHHHHHHHhc
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR   44 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R   44 (294)
                      +|+||||||+++|+++||+|+|+||+++.+|||+++++|+.+.+
T Consensus        74 ~gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          74 YSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             ESSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             cccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999976654444443

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.02  E-value=4.5e-10  Score=89.90  Aligned_cols=105  Identities=10%  Similarity=0.022  Sum_probs=75.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|.||+.+|+.| ...|.+|++||+............              .....+++|++++||+|++|+|
T Consensus         1 MkIgiIG~G~mG~~ia~~l-~~~g~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~e~~~~~diIi~~v~   65 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRL-RSRGVEVVTSLEGRSPSTIERART--------------VGVTETSEEDVYSCPVVISAVT   65 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCEEEECCTTCCHHHHHHHHH--------------HTCEECCHHHHHTSSEEEECSC
T ss_pred             CEEEEEcHHHHHHHHHHHH-HHCCCeEEEEcCchhHHHHHhhhc--------------ccccccHHHHHhhcCeEEEEec
Confidence            4799999999999999998 567999999997765543222111              1123578899999999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      .. +....+ .+....  .+.++|+++.........+.+.+++.
T Consensus        66 ~~-~~~~~~-~~~~~~--~~~~~id~st~~p~~~~~l~~~~~~~  105 (152)
T d1i36a2          66 PG-VALGAA-RRAGRH--VRGIYVDINNISPETVRMASSLIEKG  105 (152)
T ss_dssp             GG-GHHHHH-HHHHTT--CCSEEEECSCCCHHHHHHHHHHCSSS
T ss_pred             Cc-hHHHHH-Hhhccc--CCceeeccCcCCHHHHHHHHHHHhcc
Confidence            53 333322 222332  36789999998887778888877654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.01  E-value=1.8e-09  Score=86.43  Aligned_cols=101  Identities=17%  Similarity=0.263  Sum_probs=76.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|+||+++++.| ...|.+++.|+++.+.. +.....+            +.....+.++++++||+|++|++
T Consensus         1 MkIg~IG~G~mG~al~~~l-~~~~~~i~v~~r~~~~~-~~l~~~~------------g~~~~~~~~~~~~~~dvIilavk   66 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGL-KQTPHELIISGSSLERS-KEIAEQL------------ALPYAMSHQDLIDQVDLVILGIK   66 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHHH-HHHHHHH------------TCCBCSSHHHHHHTCSEEEECSC
T ss_pred             CEEEEEeccHHHHHHHHHH-HhCCCeEEEEcChHHhH-Hhhcccc------------ceeeechhhhhhhccceeeeecc
Confidence            4799999999999999998 56789999999876543 2222211            12344689999999999999997


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  196 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~  196 (294)
                        |+..    .+.++.++++.++|+++-|  +..+.|.+.+..
T Consensus        67 --p~~~----~~vl~~l~~~~~iis~~ag--i~~~~l~~~l~~  101 (152)
T d2ahra2          67 --PQLF----ETVLKPLHFKQPIISMAAG--ISLQRLATFVGQ  101 (152)
T ss_dssp             --GGGH----HHHHTTSCCCSCEEECCTT--CCHHHHHHHHCT
T ss_pred             --hHhH----HHHhhhcccceeEeccccc--ccHHHHHhhhcc
Confidence              4322    5678889999999999876  556777777744

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.00  E-value=3.8e-10  Score=90.17  Aligned_cols=93  Identities=14%  Similarity=0.188  Sum_probs=71.3

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ..-++|+||| +|.||+++|++| +..|++|.+||+....                           +.++.+..+|+++
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L-~~~G~~V~~~d~~~~~---------------------------~~~~~~~~~~~v~   58 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDWA---------------------------VAESILANADVVI   58 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCGG---------------------------GHHHHHTTCSEEE
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHH-HHcCCCcEeccccccc---------------------------ccchhhhhccccc
Confidence            4557999999 999999999998 6889999999986532                           3456788999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH  193 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~a  193 (294)
                      +++|. ..+. .+-.+.+..+++++++++++.-+.--.+++.+.
T Consensus        59 ~~~~~-~~~~-~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~  100 (152)
T d2pv7a2          59 VSVPI-NLTL-ETIERLKPYLTENMLLADLTSVKREPLAKMLEV  100 (152)
T ss_dssp             ECSCG-GGHH-HHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH
T ss_pred             cccch-hhhe-eeeecccccccCCceEEEecccCHHHHHHHHHH
Confidence            99993 3333 344778889999999999987554333444433

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.00  E-value=2.7e-10  Score=91.67  Aligned_cols=112  Identities=20%  Similarity=0.246  Sum_probs=81.2

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  154 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl  154 (294)
                      +|||||+|.||..+|++|. ..|..++ |++......+. ....       +      .. .+..+.+.++|++++++|.
T Consensus         2 kIg~IGlG~MG~~ma~~L~-~~g~~~~-~~~~~~~~~~~-~~~~-------~------~~-~~~~~~~~~~~~~i~~~~~   64 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLA-RRFPTLV-WNRTFEKALRH-QEEF-------G------SE-AVPLERVAEARVIFTCLPT   64 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHH-TTSCEEE-ECSSTHHHHHH-HHHH-------C------CE-ECCGGGGGGCSEEEECCSS
T ss_pred             eEEEEeHHHHHHHHHHHHH-hCCCEEE-EeCCHHHHHHH-HHHc-------C------Cc-ccccccccceeEEEecccc
Confidence            6999999999999999985 5666664 55554433221 1111       1      01 2234566789999999997


Q ss_pred             CccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeC
Q 022672          155 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  206 (294)
Q Consensus       155 t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV  206 (294)
                      .++.... ....+..++++.++|++++...-....+.+.+++..+.  .+|.
T Consensus        65 ~~~v~~~-~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          65 TREVYEV-AEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             HHHHHHH-HHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             hhhhhhh-hccccccccccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            6665544 46788999999999999999999999999999987654  4454

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.90  E-value=1.9e-09  Score=88.25  Aligned_cols=127  Identities=17%  Similarity=0.212  Sum_probs=87.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH---HhhcCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE---VLREADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e---ll~~aDiV~l  150 (294)
                      ++|||||+|.||..+|++| ...|++|++||+++... +.+.+.....     ..........+.++   .+..++.++.
T Consensus         2 MkIGvIGlG~MG~~ma~~L-~~~G~~V~~~dr~~~~~-~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNI-AEKGFKVAVFNRTYSKS-EEFMKANASA-----PFAGNLKAFETMEAFAASLKKPRKALI   74 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHH-HHHHHHTTTS-----TTGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEeehHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHHcCCcc-----ccccchhhhhhhhHHHHhcccceEEEE
Confidence            4699999999999999998 47899999999987653 2222211000     00001112234444   4568889999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  208 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~  208 (294)
                      +++........+ ......++++.++|++++...-+...+.+.|.+..+...-.-|+.
T Consensus        75 ~~~~~~~~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g  131 (178)
T d1pgja2          75 LVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (178)
T ss_dssp             CCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             eecCcchhhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccC
Confidence            988655555555 466778999999999999999999999999988776544333343

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.84  E-value=1.1e-09  Score=89.72  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=34.6

Q ss_pred             CccccCcccHHHHHhCCcEEEeCCCCCcchHHHHHH
Q 022672            1 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAA   36 (294)
Q Consensus         1 ~g~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l   36 (294)
                      +|+|+||||+++|+++||.|+|+||+|+.+||||++
T Consensus       120 ~g~G~D~VDl~aa~e~gI~V~n~pg~n~~SVAEha~  155 (186)
T d2naca2         120 AGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQAR  155 (186)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEEECTTTTHCSHHHHHH
T ss_pred             eccCCccccHHHHHhCCCEEEECCCcCcHHHHHHHH
Confidence            589999999999999999999999999999999993

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.81  E-value=1.1e-08  Score=82.75  Aligned_cols=104  Identities=16%  Similarity=0.318  Sum_probs=76.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      .+.-.+|.|||.|..|..-++. ++++|.+|.++|.+.... +.....++....      ........+++.+++||+|+
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~-A~~lGA~V~~~D~~~~~l-~~l~~~~~~~~~------~~~~~~~~l~~~~~~aDivI  100 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKM-AVGLGAQVQIFDINVERL-SYLETLFGSRVE------LLYSNSAEIETAVAEADLLI  100 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHH-HHHTTCEEEEEESCHHHH-HHHHHHHGGGSE------EEECCHHHHHHHHHTCSEEE
T ss_pred             CCCCcEEEEECCChHHHHHHHH-HhhCCCEEEEEeCcHHHH-HHHHHhhcccce------eehhhhhhHHHhhccCcEEE
Confidence            3567899999999999999988 589999999999886543 332222222111      11112235788999999997


Q ss_pred             EccC-CCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          150 LHPV-LDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       150 l~~P-lt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .++- ....+-.+|.++.++.||||+++||++=
T Consensus       101 ~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         101 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             EeeecCCcccCeeecHHHHhhcCCCcEEEEeec
Confidence            6642 2456789999999999999999999953

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.80  E-value=1.8e-08  Score=81.87  Aligned_cols=121  Identities=14%  Similarity=0.161  Sum_probs=77.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhcCCEEEE
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .||++|||.|.||..+|..| ...|.+|.+||+++... +.................  .......+++|.++++|+|++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l-~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYL-ALKGQSVLAWDIDAQRI-KEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CCEEEEECccHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            47999999999999999998 46899999999976542 222111000000000000  011224678999999999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  198 (294)
                      ++| +..+..++ ++....++++++++- .-|....+..+.+.+....
T Consensus        79 ~v~-~~~~~~~~-~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~~  123 (184)
T d1bg6a2          79 VVP-AIHHASIA-ANIASYISEGQLIIL-NPGATGGALEFRKILRENG  123 (184)
T ss_dssp             CSC-GGGHHHHH-HHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHTT
T ss_pred             EEc-hhHHHHHH-HHhhhccCCCCEEEE-eCCCCccHHHHHHHHHHhc
Confidence            999 34444444 556678899998874 4454455555666666544

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.61  E-value=5.6e-08  Score=79.58  Aligned_cols=108  Identities=20%  Similarity=0.253  Sum_probs=72.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcC------C----------CCcccc
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG------E----------QPVTWK  133 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~------~----------~~~~~~  133 (294)
                      .+.-.+|.|||.|..|..-++. ++++|++|.++|.+.... ++....++.++....      .          ......
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~-A~~lGA~V~v~D~~~~~~-~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~  103 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIAT-AKRLGAVVMATDVRAATK-EQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK  103 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHH-HHHTTCEEEEECSCSTTH-HHHHHTTCEECCC-----------------------CC
T ss_pred             CcCCcEEEEEcCcHHHHHHHHH-HHHcCCEEEEEeccHHHH-HHHHHhhcceEEEeccccccccccccchhhcCHHHHHH
Confidence            3566799999999999999987 589999999999876542 222221211111000      0          000000


Q ss_pred             ccCCHHHHhhcCCEEEE--ccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          134 RASSMDEVLREADVISL--HPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       134 ~~~~l~ell~~aDiV~l--~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ....+.+.+++||+|+.  .+| ...+-.+|++++++.||||+++||++
T Consensus       104 ~~~~l~~~l~~aDlVI~talip-G~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         104 QAEAVLKELVKTDIAITTALIP-GKPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCT-TSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHHHHhhhhheeeeecC-CcccceeehHHHHHhcCCCcEEEEEe
Confidence            11235567889999974  455 34467789999999999999999995

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.60  E-value=1.2e-08  Score=81.18  Aligned_cols=89  Identities=11%  Similarity=0.085  Sum_probs=56.7

Q ss_pred             EEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCC
Q 022672           76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  155 (294)
Q Consensus        76 vGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt  155 (294)
                      |||||+|+||+++++.| +.-+..+.+|+|+.... +.+.+.        +.     ....++++++++||+|++|+|. 
T Consensus         2 IgfIG~G~mg~~l~~~L-~~~~~~~~v~~R~~~~~-~~l~~~--------~~-----~~~~~~~~~~~~~DiVil~v~d-   65 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECL-KDRYEIGYILSRSIDRA-RNLAEV--------YG-----GKAATLEKHPELNGVVFVIVPD-   65 (153)
T ss_dssp             CEEESCCHHHHHHHHTT-C----CCCEECSSHHHH-HHHHHH--------TC-----CCCCSSCCCCC---CEEECSCT-
T ss_pred             EEEEeCcHHHHHHHHHH-HhCCCEEEEEeCChhhh-cchhhc--------cc-----ccccchhhhhccCcEEEEeccc-
Confidence            79999999999999987 44333335789876543 222221        11     1235677889999999999994 


Q ss_pred             ccccccccHHHHhcC-CCCcEEEEcCCCccc
Q 022672          156 KTTYHLINKERLATM-KKEAILVNCSRGPVI  185 (294)
Q Consensus       156 ~~t~~li~~~~l~~m-k~gailIN~aRG~~v  185 (294)
                      +..     .+.+..+ +++.++|+++-+...
T Consensus        66 ~~i-----~~v~~~l~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          66 RYI-----KTVANHLNLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             TTH-----HHHHTTTCCSSCCEEECCSSSCG
T ss_pred             hhh-----hHHHhhhcccceeeeecccchhh
Confidence            222     4455556 478999999876544

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.57  E-value=9.2e-08  Score=76.04  Aligned_cols=100  Identities=17%  Similarity=0.214  Sum_probs=66.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|||||+|+||+++++.|.+.-+.+|++||++++.. +.+.+.+            +.....+.++ +.+||+|+++++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~-~~l~~~~------------~~~~~~~~~~-v~~~Div~lavk   66 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKR-ERLEKEL------------GVETSATLPE-LHSDDVLILAVK   66 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHH-HHHHHHT------------CCEEESSCCC-CCTTSEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHH-HHhhhhc------------cccccccccc-ccccceEEEecC
Confidence            4799999999999999987555458999999987543 2222211            1222344444 578999999997


Q ss_pred             CCccccccccHHHHhcCC-CCcEEEEcCCCcccCHHHHHHHHH
Q 022672          154 LDKTTYHLINKERLATMK-KEAILVNCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk-~gailIN~aRG~~vd~~aL~~aL~  195 (294)
                        |+..    .+.++.++ .+.++|++.-|-  ..+.|.+.+.
T Consensus        67 --P~~~----~~v~~~l~~~~~~viS~~ag~--~~~~l~~~l~  101 (152)
T d1yqga2          67 --PQDM----EAACKNIRTNGALVLSVAAGL--SVGTLSRYLG  101 (152)
T ss_dssp             --HHHH----HHHHTTCCCTTCEEEECCTTC--CHHHHHHHTT
T ss_pred             --HHHH----HHhHHHHhhcccEEeecccCC--CHHHHHHHhC
Confidence              4321    33444444 468899887775  4556666663

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.56  E-value=5.1e-08  Score=73.76  Aligned_cols=96  Identities=13%  Similarity=0.124  Sum_probs=68.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      -+|+||+|+|||.|.+|.+-|+.| ..+|++|+++++........+.+        .  ....+....--++.+..+++|
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~l-l~~ga~v~v~~~~~~~~~~~~~~--------~--~~i~~~~~~~~~~dl~~~~lv   76 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQFTVWAN--------E--GMLTLVEGPFDETLLDSCWLA   76 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHHHHHHHT--------T--TSCEEEESSCCGGGGTTCSEE
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeccCChHHHHHHh--------c--CCceeeccCCCHHHhCCCcEE
Confidence            479999999999999999999998 68999999999887655433221        1  111121111123446788888


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +.+..     ...+|++..+.+|+..++||++
T Consensus        77 ~~at~-----d~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          77 IAATD-----DDTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             EECCS-----CHHHHHHHHHHHHHTTCEEEET
T ss_pred             eecCC-----CHHHHHHHHHHHHHcCCEEEeC
Confidence            87764     3346777888888889999974

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.55  E-value=1.5e-07  Score=75.69  Aligned_cols=97  Identities=15%  Similarity=0.237  Sum_probs=67.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+.++++.|||.|.||+.+++.| ...|+ ++++++|+.... ..+...+       +   ..+....++.+.+.++|+|
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L-~~~g~~~i~v~nRt~~ka-~~l~~~~-------~---~~~~~~~~~~~~l~~~Div   88 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYERA-VELARDL-------G---GEAVRFDELVDHLARSDVV   88 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHHH-HHHHHHH-------T---CEECCGGGHHHHHHTCSEE
T ss_pred             CcccCeEEEECCCHHHHHHHHHH-HhcCCcEEEEEcCcHHHH-HHHHHhh-------h---cccccchhHHHHhccCCEE
Confidence            58999999999999999999998 56787 699999886543 2222222       1   1123346788899999999


Q ss_pred             EEccCCCccccccccHHHHhcC------CCCcEEEEcCC
Q 022672          149 SLHPVLDKTTYHLINKERLATM------KKEAILVNCSR  181 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~m------k~gailIN~aR  181 (294)
                      +.|++   ....+|+++.++..      ++..+||+.+.
T Consensus        89 i~ats---s~~~ii~~~~i~~~~~~r~~~~~~~iiDlav  124 (159)
T d1gpja2          89 VSATA---APHPVIHVDDVREALRKRDRRSPILIIDIAN  124 (159)
T ss_dssp             EECCS---SSSCCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             EEecC---CCCccccHhhhHHHHHhcccCCCeEEEeecC
Confidence            99976   44667777766422      22346666543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.44  E-value=8.8e-07  Score=73.72  Aligned_cols=107  Identities=23%  Similarity=0.288  Sum_probs=78.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  148 (294)
                      +|.||||+|-|+|++|+.+|+.| ...|++|+++|......... .        ..+     . ...+.++++. +||++
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L-~~~Gakvvv~d~d~~~~~~~-~--------~~g-----~-~~~~~~~~~~~~~DI~   87 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTERVAHA-V--------ALG-----H-TAVALEDVLSTPCDVF   87 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH-H--------HTT-----C-EECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEecchHHHHHHH-H--------hhc-----c-cccCccccccccceee
Confidence            59999999999999999999998 68999999999876442211 1        001     1 1235667664 79998


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i  199 (294)
                      +-|.     +.+.|+++....++- .+++..+.+.+.+++ ..+.|+++.|
T Consensus        88 iPcA-----~~~~I~~~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI  131 (201)
T d1c1da1          88 APCA-----MGGVITTEVARTLDC-SVVAGAANNVIADEA-ASDILHARGI  131 (201)
T ss_dssp             EECS-----CSCCBCHHHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTC
T ss_pred             eccc-----ccccccHHHHhhhhh-heeeccCCCCcchhh-HHHHhcccce
Confidence            8664     467899999999975 467777888877764 3456666655

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.39  E-value=1.2e-07  Score=78.27  Aligned_cols=109  Identities=13%  Similarity=0.150  Sum_probs=67.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHh-hhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT-AYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      +.-++|+|||.|.+|.++|..|+ ..|.+|..|+++.+.. +.... ..+......-..+.......+++++++++|+|+
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La-~~g~~V~l~~r~~~~~-~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~ii   82 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLS-KKCREVCVWHMNEEEV-RLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIIL   82 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHH-TTEEEEEEECSCHHHH-HHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEE
T ss_pred             ceeceEEEECCCHHHHHHHHHHH-HcCCeEEEEEecHHHH-HHHhhcccccccccccccccccccchhhhhccCCCCEEE
Confidence            44468999999999999999984 6788999999875432 21111 000000000111122345578999999999999


Q ss_pred             EccCCCccccccccHH---H-HhcCCCCcEEEEcCCC
Q 022672          150 LHPVLDKTTYHLINKE---R-LATMKKEAILVNCSRG  182 (294)
Q Consensus       150 l~~Plt~~t~~li~~~---~-l~~mk~gailIN~aRG  182 (294)
                      +++| +...+.++.+-   . ....+++..+|+++.|
T Consensus        83 iavP-s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          83 FVIP-TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             ECSC-HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             EcCc-HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            9999 33334333211   0 1123567789999877

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=9.4e-07  Score=72.98  Aligned_cols=127  Identities=13%  Similarity=0.114  Sum_probs=82.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHH--HHHhhhhhhhhhcCCCC-------------ccccccCCH
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP-------------VTWKRASSM  138 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~-------------~~~~~~~~l  138 (294)
                      |+|+|||.|.||+.+|..+ ...|++|+.||+++.....  ...+..-..+...+...             .......++
T Consensus         5 kkvaViGaG~mG~~iA~~~-a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~   83 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVA-AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   83 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             EEEEEECcCHHHHHHHHHH-HhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchh
Confidence            6899999999999999987 4789999999998753211  11111100111111100             012345688


Q ss_pred             HHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 022672          139 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  204 (294)
Q Consensus       139 ~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~l  204 (294)
                      .+.+++||+|+=++|.+-+.+.-+-++.-+.++++++|...+.+  +....|.+.+.. .-+..++
T Consensus        84 ~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~  146 (192)
T d1f0ya2          84 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTR-QDRFAGL  146 (192)
T ss_dssp             HHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEE
T ss_pred             HhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcc--cccchhhhhccC-HhHEEee
Confidence            89999999999999987777766666666778999988765443  344556555533 2234444

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.30  E-value=4.6e-07  Score=73.15  Aligned_cols=96  Identities=21%  Similarity=0.251  Sum_probs=70.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      -|++|+|+|||||.-|++=|..| +-.|++|++--+......+..        ..     .++ ...+++|..+++|+|.
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNL-rDSG~~V~VGLr~gs~s~~~A--------~~-----~Gf-~v~~~~eA~~~aDiim   77 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAKA--------EA-----HGL-KVADVKTAVAAADVVM   77 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHHH--------HH-----TTC-EEECHHHHHHTCSEEE
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhh-hhcCCCEEEEcCCCCccHHHH--------hh-----hcc-ccccHHHHhhhcCeee
Confidence            58899999999999999999998 788998876444332222211        11     112 2368999999999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      +.+|. +....+..++....||+|+.+. .+.|
T Consensus        78 ~L~PD-~~q~~vy~~~I~p~lk~g~~L~-FaHG  108 (182)
T d1np3a2          78 ILTPD-EFQGRLYKEEIEPNLKKGATLA-FAHG  108 (182)
T ss_dssp             ECSCH-HHHHHHHHHHTGGGCCTTCEEE-ESCC
T ss_pred             eecch-HHHHHHHHHhhhhhcCCCcEEE-Eecc
Confidence            99993 3345556678889999999876 4444

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.26  E-value=1.6e-06  Score=70.62  Aligned_cols=106  Identities=20%  Similarity=0.234  Sum_probs=65.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhH-HHHHHhh-hhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      ++|+|||.|.+|.++|..|+ ..|.+|..|.+..+.. .+..... ....... ...........++++.++++|+|+++
T Consensus         1 MkI~ViGaG~~GtalA~~la-~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~ad~Ii~a   78 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLV-DNGNEVRIWGTEFDTEILKSISAGREHPRLGV-KLNGVEIFWPEQLEKCLENAEVVLLG   78 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HHCCEEEEECCGGGHHHHHHHHTTCCBTTTTB-CCCSEEEECGGGHHHHHTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCEEEEEEecccHHHHHHHhhhhhhhhhcc-hhccccccccccHHHHHhccchhhcc
Confidence            57999999999999999985 5688999998754332 1111110 0000000 00111223356889999999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                      +| ....+.++ ++....+++. .+|.++.|..
T Consensus        79 vp-s~~~~~~~-~~l~~~l~~~-~ii~~tkg~~  108 (180)
T d1txga2          79 VS-TDGVLPVM-SRILPYLKDQ-YIVLISKGLI  108 (180)
T ss_dssp             SC-GGGHHHHH-HHHTTTCCSC-EEEECCCSEE
T ss_pred             cc-hhhhHHHH-Hhhccccccc-eecccccCcc
Confidence            99 34444444 4455666665 5555666654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=6e-07  Score=71.34  Aligned_cols=99  Identities=10%  Similarity=0.068  Sum_probs=65.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      ++|+|||.|.||..+|..| ...|.+|..+++.........       ...............+..+.+..+|+|+++++
T Consensus         1 MkI~IiGaG~iG~~~a~~L-~~~G~~V~~~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vk   72 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTAL-CKQGHEVQGWLRVPQPYCSVN-------LVETDGSIFNESLTANDPDFLATSDLLLVTLK   72 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCCSEEEEE-------EECTTSCEEEEEEEESCHHHHHTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHH-HHCCCceEEEEcCHHHhhhhc-------cccCCccccccccccchhhhhcccceEEEeec
Confidence            5899999999999999998 578999999998765321100       00000011111122345577789999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          154 LDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       154 lt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      . .++...+ +.....+++++.++.+..|
T Consensus        73 a-~~~~~~~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          73 A-WQVSDAV-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             G-GGHHHHH-HHHHTTSCTTSCEEEECSS
T ss_pred             c-cchHHHH-HhhccccCcccEEeeccCc
Confidence            3 4444443 4555677888888888766

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=1.5e-06  Score=63.13  Aligned_cols=72  Identities=24%  Similarity=0.183  Sum_probs=48.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      +++||+|.|+|+|..|+++|+.| ...|++|++||.+........       +.    ....+.....-++.+.+.|+|+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L-~~~g~~v~~~D~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~d~vi   69 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFF-LARGVTPRVMDTRMTPPGLDK-------LP----EAVERHTGSLNDEWLMAADLIV   69 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHH-HHTTCCCEEEESSSSCTTGGG-------SC----TTSCEEESBCCHHHHHHCSEEE
T ss_pred             CcCCCEEEEEeECHHHHHHHHHH-HHCCCEEEEeeCCcCchhHHH-------Hh----hccceeecccchhhhccCCEEE
Confidence            57899999999999999999997 689999999998664321110       11    1111111112246678899998


Q ss_pred             EccC
Q 022672          150 LHPV  153 (294)
Q Consensus       150 l~~P  153 (294)
                      +..-
T Consensus        70 ~SPG   73 (93)
T d2jfga1          70 ASPG   73 (93)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            8654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.19  E-value=1.8e-06  Score=70.79  Aligned_cols=118  Identities=15%  Similarity=0.135  Sum_probs=76.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH---HHhhhhhhhhhcCCCCc-------cccccCCHHHHhh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQPV-------TWKRASSMDEVLR  143 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~~~~~~~l~ell~  143 (294)
                      ++|+|||.|.||+.+|..+ ...|++|+.||++.+.....   ....+..........+.       ......+++ .+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~-a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~   82 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQS-ASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYG-DFG   82 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHH-HHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSST-TGG
T ss_pred             CEEEEECcCHHHHHHHHHH-HhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccc-ccc
Confidence            4799999999999999887 47899999999987542211   11111111111110000       011122333 478


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  195 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  195 (294)
                      +||+|+-++|.+-+.+.-+-++.-+.++++++|...+.+-  ....|.+.+.
T Consensus        83 ~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l--~i~~la~~~~  132 (186)
T d1wdka3          83 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALK  132 (186)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCS
T ss_pred             ccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccc--cHHHHHHhcc
Confidence            9999999999888877767677778899999988765543  4455655553

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.15  E-value=4.1e-06  Score=69.34  Aligned_cols=157  Identities=11%  Similarity=0.049  Sum_probs=91.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh--------hhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      ++|+|||+|.+|..+|..|+ ..|.+|++||...... +....+.        .+.+.... .........++++.++.|
T Consensus         1 MkI~ViGlG~vGl~~a~~la-~~g~~V~g~D~n~~~i-~~ln~g~~p~~e~~~~~~l~~~~-~~~~~~~~~~~~~~i~~~   77 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLS-ARGHEVIGVDVSSTKI-DLINQGKSPIVEPGLEALLQQGR-QTGRLSGTTDFKKAVLDS   77 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHTTCCSSCCTTHHHHHHHHH-HTTCEEEESCHHHHHHTC
T ss_pred             CEEEEECCCHhHHHHHHHHH-hCCCcEEEEeCCHHHH-HHhcccCCcccchhhhhhhhhhh-cccccccCCCHHHHHhhC
Confidence            47999999999999999984 7899999999875432 2111000        00000000 000122456888999999


Q ss_pred             CEEEEccCCCcccc-c---------ccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH-c--CCcceEEee-CCCC
Q 022672          146 DVISLHPVLDKTTY-H---------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK-Q--NPMFRVGLD-VFED  209 (294)
Q Consensus       146 DiV~l~~Plt~~t~-~---------li~--~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~-~--g~i~ga~lD-V~~~  209 (294)
                      |++++|+| ||... +         .++  ...++..+++.++|.-|...+--.+.+...+. +  +...+--+. +|.+
T Consensus        78 d~i~i~Vp-TP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~P  156 (202)
T d1mv8a2          78 DVSFICVG-TPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNP  156 (202)
T ss_dssp             SEEEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECC
T ss_pred             CEEEEecC-ccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhh
Confidence            99999999 44211 1         111  13445677899999998887766666544332 1  221111111 2666


Q ss_pred             CCCCC-C---CccCCCCeEEccCCCCCcHHHHH
Q 022672          210 EPYMK-P---GLSEMKNAIVVPHIASASKWTRE  238 (294)
Q Consensus       210 EP~~~-~---~L~~~~nviiTPHia~~t~~~~~  238 (294)
                      |=+.. .   .+...|.+++    |+.+.++.+
T Consensus       157 E~~~~G~a~~d~~~~~~iVi----G~~~~~~~~  185 (202)
T d1mv8a2         157 EFLRESTAIKDYDFPPMTVI----GELDKQTGD  185 (202)
T ss_dssp             CCCCTTSHHHHHHSCSCEEE----EESSHHHHH
T ss_pred             hhhcccchhhhhcCCCeEEE----EeCCHHHHH
Confidence            76533 2   4666777775    445555444

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.05  E-value=4.5e-06  Score=69.48  Aligned_cols=95  Identities=21%  Similarity=0.200  Sum_probs=63.0

Q ss_pred             cCC-CEEEEEcCChHHHHHHHHHhhc------CCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 022672           71 LKG-QTVGVIGAGRIGSAYARMMVEG------FKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  142 (294)
Q Consensus        71 l~g-ktvGIIGlG~IG~~vA~~L~~~------~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  142 (294)
                      +.| |+|+|||||.-|++=|..| +-      .|.+|++ ..+...+....         ...+-.... ....+.+|..
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNL-rDSG~~~~sgv~V~VGLr~gs~S~~kA---------~~dGf~v~~-~~v~~v~EAv  109 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNL-KDSLTEAKSDVVVKIGLRKGSNSFAEA---------RAAGFSEEN-GTLGDMWETI  109 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHH-HHHHHHTTCCCEEEEEECTTCSCHHHH---------HHTTCCGGG-TCEEEHHHHH
T ss_pred             hcCCCEEEEEEeccHHHHHHHhC-hhhcccccCCceEEEEeCCCChhHHHH---------HHcCCccCC-CcccCHHHHH
Confidence            578 9999999999999999998 54      5677654 43332221111         111111000 1234788999


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEE
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVN  178 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN  178 (294)
                      ++||+|.+.+|.. ....+. ++....||+|+.+.=
T Consensus       110 ~~ADiVmiLlPDe-~Q~~vy-~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         110 SGSDLVLLLISDS-AQADNY-EKVFSHMKPNSILGL  143 (226)
T ss_dssp             HTCSEEEECSCHH-HHHHHH-HHHHHHSCTTCEEEE
T ss_pred             hhCCEEEEecchH-HHHHHH-HHHHHhcCCCceeee
Confidence            9999999999943 234444 578899999998773

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=1.4e-05  Score=64.11  Aligned_cols=79  Identities=15%  Similarity=0.142  Sum_probs=64.3

Q ss_pred             CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.++.||++.|||-+. +|+.+|.+| ...|++|+.++.+.                            .++.+.+++||
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL-~~~gatVt~~h~~t----------------------------~~l~~~~~~AD   82 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMEL-LLAGCTTTVTHRFT----------------------------KNLRHHVENAD   82 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HTTTCEEEEECSSC----------------------------SCHHHHHHHCS
T ss_pred             CcccccceEEEEeccccccHHHHHHH-HHhhcccccccccc----------------------------chhHHHHhhhh
Confidence            3579999999999987 999999987 67899998876432                            36788899999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  182 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  182 (294)
                      +|+.++.    -.+++..+   .+|+|+++||++--
T Consensus        83 ivI~a~G----~p~~i~~~---~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          83 LLIVAVG----KPGFIPGD---WIKEGAIVIDVGIN  111 (166)
T ss_dssp             EEEECSC----CTTCBCTT---TSCTTCEEEECCCE
T ss_pred             Hhhhhcc----Cccccccc---ccCCCcEEEecCce
Confidence            9999997    24667665   46899999999643

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.3e-05  Score=63.14  Aligned_cols=83  Identities=18%  Similarity=0.317  Sum_probs=65.1

Q ss_pred             CcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.+++||++.|||-+. +|+.+|.+| ..-|++|..++.+.                            .++.+.++++|
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL-~~~gatVt~~~~~t----------------------------~~l~~~~~~aD   84 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLL-LWNNATVTTCHSKT----------------------------AHLDEEVNKGD   84 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTTC----------------------------SSHHHHHTTCS
T ss_pred             CcccccceEEEEecCCccchHHHHHH-HhccCceEEEeccc----------------------------ccHHHHHhhcc
Confidence            4579999999999976 899999998 57899999887532                            35778899999


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  186 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  186 (294)
                      +|+.+++-    .+++..+   ..|+|+++||++--.+.|
T Consensus        85 ivi~a~G~----~~~i~~~---~vk~g~iviDvgi~~~~~  117 (170)
T d1a4ia1          85 ILVVATGQ----PEMVKGE---WIKPGAIVIDCGINYVPD  117 (170)
T ss_dssp             EEEECCCC----TTCBCGG---GSCTTCEEEECCCBC---
T ss_pred             chhhcccc----ccccccc---cccCCCeEeccCcccccc
Confidence            99999973    5566655   468999999997544433

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.91  E-value=5.8e-05  Score=61.54  Aligned_cols=165  Identities=13%  Similarity=0.149  Sum_probs=97.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh-------hhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-------GQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      ++|+|||+|.+|..+|..+  +.|.+|++||...... +....+.       .+.+.....  .......+......++|
T Consensus         1 MkI~ViGlG~vGl~~a~~~--a~g~~V~g~Din~~~v-~~l~~g~~p~~e~~l~~~~~~~~--~~~~~~~~~~~~~~~~~   75 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL--SLQNEVTIVDILPSKV-DKINNGLSPIQDEYIEYYLKSKQ--LSIKATLDSKAAYKEAE   75 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH--TTTSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHHSC--CCEEEESCHHHHHHHCS
T ss_pred             CEEEEECCChhHHHHHHHH--HCCCcEEEEECCHHHH-HHHhhcccccchhhHHHHhhhhh--hhhhccchhhhhhhccc
Confidence            4799999999999999765  3699999999886532 2111100       000000000  11122345566678999


Q ss_pred             EEEEccCCCccccc-ccc-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCCCCCC-C--
Q 022672          147 VISLHPVLDKTTYH-LIN-------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-P--  215 (294)
Q Consensus       147 iV~l~~Plt~~t~~-li~-------~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~--  215 (294)
                      ++++++|...+... ..+       .+.+...+++.++|--+.-.+-..+.+...+.+.++      ++.+|-+.. .  
T Consensus        76 ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~------~~~PE~i~~G~ai  149 (196)
T d1dlja2          76 LVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRI------IFSPEFLRESKAL  149 (196)
T ss_dssp             EEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCE------EECCCCCCTTSTT
T ss_pred             cccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhh------ccchhhcchhhhH
Confidence            99999995433222 111       122334567888888888877777778777766554      356777643 2  


Q ss_pred             -CccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHH
Q 022672          216 -GLSEMKNAIVVPHIASASKWTREGMATLAALNVLGK  251 (294)
Q Consensus       216 -~L~~~~nviiTPHia~~t~~~~~~~~~~~~~nl~~~  251 (294)
                       .+...|++++--+-.. +.. .......+++.+...
T Consensus       150 ~d~~~p~riv~G~~~~~-~~~-~~~~~~~~~~l~~~~  184 (196)
T d1dlja2         150 YDNLYPSRIIVSCEEND-SPK-VKADAEKFALLLKSA  184 (196)
T ss_dssp             HHHHSCSCEEEECCTTS-CHH-HHHHHHHHHHHHHHH
T ss_pred             hhccCCCEEEEeCCHhh-HHH-HHHHHHHHHHHHHhh
Confidence             3566788876554322 222 233444555555544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.88  E-value=1.3e-05  Score=61.35  Aligned_cols=74  Identities=12%  Similarity=0.261  Sum_probs=50.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-c-ccccCCHHHH-hhcCCEEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-T-WKRASSMDEV-LREADVISL  150 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~el-l~~aDiV~l  150 (294)
                      |++.|+|+|.+|+.+|+.| ...|.+|+++|..+... +..        ...+.... + ......|+++ +.++|.+++
T Consensus         1 k~~iIiG~G~~G~~la~~L-~~~g~~vvvid~d~~~~-~~~--------~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKV-NAY--------ASYATHAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHH-HHT--------TTTCSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCeEEEecCcHHHH-HHH--------HHhCCcceeeecccchhhhccCCccccEEEE
Confidence            5789999999999999998 68999999999876542 221        11111000 0 1112345555 789999999


Q ss_pred             ccCCCcc
Q 022672          151 HPVLDKT  157 (294)
Q Consensus       151 ~~Plt~~  157 (294)
                      ++|...+
T Consensus        71 ~~~~~~~   77 (134)
T d2hmva1          71 AIGANIQ   77 (134)
T ss_dssp             CCCSCHH
T ss_pred             EcCchHH
Confidence            9985443

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.82  E-value=6e-05  Score=63.53  Aligned_cols=109  Identities=17%  Similarity=0.233  Sum_probs=78.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READV  147 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDi  147 (294)
                      .+|.|+||.|-|+|++|+.+|+.| ...|++|++.|.+.... +.+....       +.      ...+.++++ ..||+
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L-~~~Gakvv~~d~~~~~~-~~~~~~~-------g~------~~~~~~~~~~~~cDI   99 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAAV-SAAVAEE-------GA------DAVAPNAIYGVTCDI   99 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHHH-------CC------EECCGGGTTTCCCSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEeecccHHHH-HHHHHhc-------CC------cccCCcccccccccE
Confidence            469999999999999999999998 68999999999876432 2222211       11      112344444 57999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i  199 (294)
                      ++-|.     ..+.|+.+....++- .+++-.+...+.+.++- +.|.+..|
T Consensus       100 l~PcA-----~~~~I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI  144 (230)
T d1leha1         100 FAPCA-----LGAVLNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGI  144 (230)
T ss_dssp             EEECS-----CSCCBSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTC
T ss_pred             ecccc-----cccccChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCc
Confidence            98876     477888888888875 47788888888876654 44555444

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=1.1e-05  Score=65.18  Aligned_cols=109  Identities=15%  Similarity=0.138  Sum_probs=66.5

Q ss_pred             ccCcccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 022672           66 FVGNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  144 (294)
Q Consensus        66 ~~g~~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  144 (294)
                      ..|.+++||++.|||=+. +|+.+|.+| ..-|+.|..++.........   .........+.........+.+++...+
T Consensus        22 ~~g~~l~GK~vvVIGrS~iVG~Pla~lL-~~~gaTVt~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lk~~~~~   97 (171)
T d1edza1          22 PEGNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTR---GESLKLNKHHVEDLGEYSEDLLKKCSLD   97 (171)
T ss_dssp             CTTCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEES---CCCSSCCCCEEEEEEECCHHHHHHHHHH
T ss_pred             cccCCCCCCEEEEECCccccHHHHHHHH-HHCCCEEEEecccccccccc---ccceeeeeeccccccccchhHHhhcccc
Confidence            346789999999999886 499999998 57899999887553221000   0000000000000000011237788889


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  184 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  184 (294)
                      +|+|+.++|-. .  ..+..+   ..|+|+++||++-...
T Consensus        98 aDIvIsavG~p-~--~~i~~d---~ik~GavvIDvGi~~~  131 (171)
T d1edza1          98 SDVVITGVPSE-N--YKFPTE---YIKEGAVCINFACTKN  131 (171)
T ss_dssp             CSEEEECCCCT-T--CCBCTT---TSCTTEEEEECSSSCC
T ss_pred             CCEEEEccCCC-c--cccChh---hcccCceEeecccccc
Confidence            99999999832 1  114443   3589999999986543

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.78  E-value=7e-05  Score=66.73  Aligned_cols=98  Identities=21%  Similarity=0.315  Sum_probs=71.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      -++++|||.|..++.-++.+..-++. +|.+|++++... +++.+.    +..  ..+..+..+.++++.++.||+|+.|
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~-~~~~~~----l~~--~~g~~v~~~~s~~eav~~ADIi~t~  200 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLAT-AKLIAN----LKE--YSGLTIRRASSVAEAVKGVDIITTV  200 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHH----HTT--CTTCEEEECSSHHHHHTTCSEEEEC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHH-HHHHHh----hhh--ccCCCceecCCHHHHHhcCCceeec
Confidence            36899999999999888876556776 689999987543 233322    111  1234455678999999999999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      ++ ++.+.-++..+   .+|||+.+..++-
T Consensus       201 Ta-s~s~~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         201 TA-DKAYATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             CC-CSSEEEEECGG---GCCTTCEEEECSC
T ss_pred             cc-cCCCCcccchh---hcCCCCEEeeccc
Confidence            87 44556677764   5789999988864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=0.00018  Score=57.39  Aligned_cols=76  Identities=20%  Similarity=0.214  Sum_probs=51.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-HhhcCCE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADV  147 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDi  147 (294)
                      ..+.||+|.|+|.|..+++++-.| ...|++|+.++|+.+.. +...+.+..    ..  ..   ...++++ ...++|+
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al-~~~g~~i~I~nRt~~ka-~~l~~~~~~----~~--~~---~~~~~~~~~~~~~dl   82 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSRA-EELAKLFAH----TG--SI---QALSMDELEGHEFDL   82 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHH-HHHHHHTGG----GS--SE---EECCSGGGTTCCCSE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHh-cccceEEEeccchHHHH-HHHHHHHhh----cc--cc---cccccccccccccce
Confidence            468899999999999999999987 57889999999987543 222222111    11  11   1112222 2467999


Q ss_pred             EEEccCCC
Q 022672          148 ISLHPVLD  155 (294)
Q Consensus       148 V~l~~Plt  155 (294)
                      |+.|.|..
T Consensus        83 iIN~Tp~G   90 (170)
T d1nyta1          83 IINATSSG   90 (170)
T ss_dssp             EEECCSCG
T ss_pred             eecccccC
Confidence            99999954

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.61  E-value=2.9e-05  Score=61.53  Aligned_cols=98  Identities=8%  Similarity=0.075  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+|+|.|||.|.||+.+|+.|+ .-|.+|+++|++.... +.+.+.+.....    ..........+++.+...|+++.+
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~-~~g~~V~v~dr~~~~a-~~l~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~i~~   74 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLT-DSGIKVTVACRTLESA-KKLSAGVQHSTP----ISLDVNDDAALDAEVAKHDLVISL   74 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHH-TTTCEEEEEESCHHHH-HHHHTTCTTEEE----EECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCEEEEEECChHHH-HHHHhccccccc----ccccccchhhhHhhhhccceeEee
Confidence            4789999999999999999984 6799999999987643 222221110000    000111123466778889999988


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +|...  ...+   ....++.+..+++.+
T Consensus        75 ~~~~~--~~~~---~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          75 IPYTF--HATV---IKSAIRQKKHVVTTS   98 (182)
T ss_dssp             SCGGG--HHHH---HHHHHHHTCEEECSS
T ss_pred             ccchh--hhHH---HHHHHhhccceeecc
Confidence            88432  1111   122234456666664

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=0.00015  Score=57.65  Aligned_cols=96  Identities=18%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCC-HHHHhhcCCEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASS-MDEVLREADVIS  149 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-l~ell~~aDiV~  149 (294)
                      .|.+|.|+|.|.+|...++.+ +.+|++|++.|++..+. +. ...+       +.... ......+ .+......|+++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~a-k~~G~~vi~~~~~~~k~-~~-a~~l-------Ga~~~i~~~~~~~~~~~~~~~~d~vi   96 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLIS-KAMGAETYVISRSSRKR-ED-AMKM-------GADHYIATLEEGDWGEKYFDTFDLIV   96 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSSTTH-HH-HHHH-------TCSEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCCcchhHHHHh-hhccccccccccchhHH-HH-hhcc-------CCcEEeeccchHHHHHhhhcccceEE
Confidence            578999999999999999874 78999999999876543 21 1111       11111 0111112 334456789998


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .++.....   ..-...++.++++..++.++
T Consensus        97 ~~~~~~~~---~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          97 VCASSLTD---IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             ECCSCSTT---CCTTTGGGGEEEEEEEEECC
T ss_pred             EEecCCcc---chHHHHHHHhhccceEEEec
Confidence            88763221   11245677888998888874

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.55  E-value=0.00011  Score=62.41  Aligned_cols=118  Identities=17%  Similarity=0.258  Sum_probs=74.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh----------HHHHHHhhhh----hhhhhcCCCCcccccc
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT----------RLEKFVTAYG----QFLKANGEQPVTWKRA  135 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~----------~~~~~~~~~~----~~~~~~~~~~~~~~~~  135 (294)
                      +|.|+||.|-|+|++|+.+|+.| ...|++|++.+.....          ...+..+..+    +......    +....
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L-~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~----~~~~~  102 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKD----NAEFV  102 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTS----CCCCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhcc----CceEe
Confidence            69999999999999999999998 6899999876643210          0000000000    0000000    01112


Q ss_pred             CCHHHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          136 SSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       136 ~~l~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      .+.++++ ..||+++-|.-     .+.|+.+....|+- .+++-.+-+.+ ..++ .+.|.+..|.
T Consensus       103 ~~~~~i~~~~~DIliPcA~-----~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         103 KNPDAIFKLDVDIFVPAAI-----ENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             SSTTGGGGCCCSEEEECSC-----SSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             eCcchhccccccEEeecch-----hccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            2334444 48999998864     66788888888874 47888888886 4555 3777776664

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.0003  Score=55.77  Aligned_cols=95  Identities=19%  Similarity=0.168  Sum_probs=61.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh--------
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--------  142 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--------  142 (294)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|++..... . ...+       +..........+..+..        
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a-~~~G~~~Vi~~d~~~~rl~-~-a~~~-------Ga~~~~~~~~~~~~~~~~~~~~~~g   95 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDLSATRLS-K-AKEI-------GADLVLQISKESPQEIARKVEGQLG   95 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHHH-H-HHHT-------TCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCccHHHHHHHH-HHcCCceEEeccCCHHHHH-H-HHHh-------CCcccccccccccccccccccccCC
Confidence            467899999999999999885 78998 7999998865432 1 1111       21111111123443332        


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      ...|+++-++.. +.+.    +..++.++++..++.++-
T Consensus        96 ~g~Dvvid~~G~-~~~~----~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          96 CKPEVTIECTGA-EASI----QAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             SCCSEEEECSCC-HHHH----HHHHHHSCTTCEEEECSC
T ss_pred             CCceEEEeccCC-chhH----HHHHHHhcCCCEEEEEec
Confidence            257999998872 3322    567788899988887753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.53  E-value=0.00016  Score=55.04  Aligned_cols=95  Identities=13%  Similarity=0.234  Sum_probs=57.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~l~~  152 (294)
                      ++|.|+|+|.+|+.+|+.| ...|.+|++.|..++.. +...+.++...- .+.    ......|+++ ++++|.++.+.
T Consensus         1 M~IvI~G~G~~G~~la~~L-~~~g~~v~vid~d~~~~-~~~~~~~~~~vi-~Gd----~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDIC-KKASAEIDALVI-NGD----CTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHCSSEEE-ESC----TTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCCcceecCChhhh-hhhhhhhhhhhc-cCc----ccchhhhhhcChhhhhhhcccC
Confidence            4799999999999999998 68999999999876532 222111110000 000    0011223333 57899999888


Q ss_pred             CCCccccccccHHHHhcCCCCcEEE
Q 022672          153 VLDKTTYHLINKERLATMKKEAILV  177 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailI  177 (294)
                      +.  +...++-....+.+.+..+++
T Consensus        74 ~~--d~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          74 GK--EEVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             SC--HHHHHHHHHHHHHTTCCCEEE
T ss_pred             Cc--HHHHHHHHHHHHHcCCceEEE
Confidence            73  334444455556676665554

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.52  E-value=0.00049  Score=54.11  Aligned_cols=107  Identities=16%  Similarity=0.262  Sum_probs=61.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      +-++|+|||.|.+|+.+|..|+ ..+ .+++.+|.+.........+. .. ...............+.++.+++||+|++
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~-~~~~~el~L~D~~~~~~~g~a~Dl-~~-~~~~~~~~~~~~~~~~~~~~~~~adiVvi   82 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCA-LRELADVVLYDVVKGMPEGKALDL-SH-VTSVVDTNVSVRAEYSYEAALTGADCVIV   82 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHHH-HH-HHHHTTCCCCEEEECSHHHHHTTCSEEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHH-hCCCceEEEEEeccccchhHHHHH-hh-hccccCCeeEEeccCchhhhhcCCCeEEE
Confidence            4578999999999999998763 334 38999998764322211111 00 00001111112233567788999999999


Q ss_pred             ccCCCc--------cccccc---cH-------HHHhcCCCCcEEEEcCC
Q 022672          151 HPVLDK--------TTYHLI---NK-------ERLATMKKEAILVNCSR  181 (294)
Q Consensus       151 ~~Plt~--------~t~~li---~~-------~~l~~mk~gailIN~aR  181 (294)
                      +.....        .++.-+   |.       +.+....|++++++++.
T Consensus        83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN  131 (154)
T d1pzga1          83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  131 (154)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            884211        132211   11       22344568899999865

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.50  E-value=0.00016  Score=57.69  Aligned_cols=84  Identities=17%  Similarity=0.213  Sum_probs=54.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .+|||||+|.||+..++.+...-++++++ +|++....                 .........++++++.+.|+|++|+
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~D~Vvi~t   66 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-----------------TKTPVFDVADVDKHADDVDVLFLCM   66 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-----------------SSSCEEEGGGGGGTTTTCSEEEECS
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc-----------------cccccccchhhhhhccccceEEEeC
Confidence            46999999999999999874334788764 56554321                 1122334457778889999999999


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEc
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      |..  ++.   +-..+.++.|.-+|.+
T Consensus        67 p~~--~h~---~~a~~aL~aG~~vv~~   88 (170)
T d1f06a1          67 GSA--TDI---PEQAPKFAQFACTVDT   88 (170)
T ss_dssp             CTT--THH---HHHHHHHTTTSEEECC
T ss_pred             CCc--ccH---HHHHHHHHCCCcEEEe
Confidence            943  322   2233445666655543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.50  E-value=0.00036  Score=56.57  Aligned_cols=83  Identities=14%  Similarity=0.175  Sum_probs=53.4

Q ss_pred             CcccCCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           68 GNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        68 g~~l~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.+|.||++.|.| -|.||+.+|+.| ...|++|+..+++..... ...+........ ...........++++++.+.|
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~l-a~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~iD   94 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDKAQ-AAADSVNKRFKV-NVTAAETADDASRAEAVKGAH   94 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHH-HHHHHHHHHHTC-CCEEEECCSHHHHHHHTTTCS
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHH-HhhccchhhcccchHHHH-HHHHHHHhccch-hhhhhhcccHHHHHHHhcCcC
Confidence            4589999999999 599999999998 588999999999865432 222211111000 001111122245667788888


Q ss_pred             EEEEccC
Q 022672          147 VISLHPV  153 (294)
Q Consensus       147 iV~l~~P  153 (294)
                      +|+.+.+
T Consensus        95 ilin~Ag  101 (191)
T d1luaa1          95 FVFTAGA  101 (191)
T ss_dssp             EEEECCC
T ss_pred             eeeecCc
Confidence            8877754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00019  Score=57.87  Aligned_cols=83  Identities=18%  Similarity=0.193  Sum_probs=52.9

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHH--HHHHhhhhhhhhhcCCCCc---cccccCCHHHH
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRL--EKFVTAYGQFLKANGEQPV---TWKRASSMDEV  141 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~l~el  141 (294)
                      +.++.||+|.|+|.|..|++++..|. ..|+ +++.++|+.+...  ..+.+.+.    .......   .+....++.+.
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~-~~g~~~i~i~nR~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~   87 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRVN----ENTDCVVTVTDLADQQAFAEA   87 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEECSSTTHHHHHHHHHHHH----HHSSCEEEEEETTCHHHHHHH
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHh-hcCCceEeeeccchHHHHHHHHHHHHHH----hhcCcceEeeecccccchhhh
Confidence            34689999999999999999998874 5676 7888998765321  11111111    1111111   11112345667


Q ss_pred             hhcCCEEEEccCCC
Q 022672          142 LREADVISLHPVLD  155 (294)
Q Consensus       142 l~~aDiV~l~~Plt  155 (294)
                      +.++|+|+.+.|..
T Consensus        88 ~~~~diiIN~Tp~G  101 (182)
T d1vi2a1          88 LASADILTNGTKVG  101 (182)
T ss_dssp             HHTCSEEEECSSTT
T ss_pred             hcccceeccccCCc
Confidence            88999999999954

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.43  E-value=0.00066  Score=57.09  Aligned_cols=118  Identities=18%  Similarity=0.206  Sum_probs=76.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch----------hHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPVTWKRASSM  138 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  138 (294)
                      .++.|+||.|=|+|++|+.+|+.|.+.+|++|++.+.+..          .....+.+..+.      ..........+.
T Consensus        27 ~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~------~~~~~~~~~~~~  100 (234)
T d1b26a1          27 IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGT------VVTYPKGERITN  100 (234)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSC------STTCSSCEEECH
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcc------eeccccceeecc
Confidence            4689999999999999999999875568999987653211          011111111000      000000112356


Q ss_pred             HHHhh-cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          139 DEVLR-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       139 ~ell~-~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ++++. +||+++-|.     ..+.|+.+....++-. +++-.+-+.+.. ++ .+.|.+..|.
T Consensus       101 ~~~~~~~~DI~~PcA-----~~~~I~~~~a~~l~~~-~I~e~AN~p~t~-~a-~~~L~~rgI~  155 (234)
T d1b26a1         101 EELLELDVDILVPAA-----LEGAIHAGNAERIKAK-AVVEGANGPTTP-EA-DEILSRRGIL  155 (234)
T ss_dssp             HHHHTSCCSEEEECS-----CTTCBCHHHHTTCCCS-EEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             ccccccccceeecch-----hcccccHHHHHHhhhc-eEeecCCCCCCH-HH-HHHHHHCCeE
Confidence            67775 999998774     4778999999999864 788888888744 34 4667776653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=0.00019  Score=57.69  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~  109 (294)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|++.|+++..
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~a-k~~Ga~~Vi~~~~~~~~   65 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIA-RSLGAENVIVIAGSPNR   65 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHH-HHTTBSEEEEEESCHHH
T ss_pred             CCCCEEEEECCCccchhheecc-ccccccccccccccccc
Confidence            3588999999999999999874 89998 89999987654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=6.6e-05  Score=56.08  Aligned_cols=38  Identities=21%  Similarity=0.354  Sum_probs=33.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      ..+.||||+|-|..|+.+|.. ++.+|++++++|+....
T Consensus         9 ~~~~kigIlGgGQL~rMla~a-A~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIE-CQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHH-HHTTTCEEEEEESSTTC
T ss_pred             CCCCEEEEEeCCHHHHHHHHH-HHHCCCEEEEEcCCCCC
Confidence            456789999999999999998 58999999999998764

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.37  E-value=0.00054  Score=59.39  Aligned_cols=116  Identities=16%  Similarity=0.220  Sum_probs=73.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch----------hHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPVTWKRASSM  138 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  138 (294)
                      .+|.|+||.|=|+|++|+.+|+.| ...|++|++.+....          ..+.......+..      ...... ..+-
T Consensus        32 ~~L~gktvaIqGfGnVG~~~A~~L-~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~------~~~~~~-~~~~  103 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNVGLHSMRYL-HRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTI------LGFPKA-KIYE  103 (293)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSS------TTCTTS-CBCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCe------eccccc-ccCC
Confidence            479999999999999999999998 689999987753210          1111111111000      000000 1112


Q ss_pred             HHHh-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          139 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       139 ~ell-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      ++++ ..||+++-|.     +.+.|+.+....++-. +++-.+.|++-. ++ .+.|.+..|.
T Consensus       104 ~~~~~~~~DIliPaA-----~~~~I~~~~a~~l~ak-~I~EgAN~P~t~-eA-~~~L~~~gI~  158 (293)
T d1hwxa1         104 GSILEVDCDILIPAA-----SEKQLTKSNAPRVKAK-IIAEGANGPTTP-QA-DKIFLERNIM  158 (293)
T ss_dssp             SCGGGCCCSEEEECS-----SSSCBCTTTGGGCCCS-EEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             cccccCCccEEeecc-----ccccccHHHHHHHhhC-EEeccCCCCCCc-ch-HHHHHHCCCE
Confidence            2344 4899998775     4678888888888654 788888888644 44 3667666553

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.35  E-value=0.00041  Score=54.10  Aligned_cols=104  Identities=19%  Similarity=0.213  Sum_probs=59.0

Q ss_pred             CEEEEEcCChHHHHHHHHHh-hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~-~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      |+|+|||.|.+|..+|-.|+ +++--++..+|...........+-. +.... ...... ....+. +.+++||+|+++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~-~a~~~-~~~~~~-~~~~d~-~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQ-DAMAN-LEAHGN-IVINDW-AALADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHH-HHGGG-SSSCCE-EEESCG-GGGTTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhh-ccccc-cCCccc-eeccCH-HHhccccEEEEec
Confidence            78999999999999998764 2444589999987654322221111 00000 111111 122344 4479999999986


Q ss_pred             CCCc-------cccc-cc--cH-------HHHhcCCCCcEEEEcCC
Q 022672          153 VLDK-------TTYH-LI--NK-------ERLATMKKEAILVNCSR  181 (294)
Q Consensus       153 Plt~-------~t~~-li--~~-------~~l~~mk~gailIN~aR  181 (294)
                      ....       .++. ++  |.       +.++...|++++|+++.
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  123 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence            6322       1221 11  11       23345578999999854

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00028  Score=55.65  Aligned_cols=66  Identities=17%  Similarity=0.300  Sum_probs=45.8

Q ss_pred             EEEEEcCChHHHH-HHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           75 TVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        75 tvGIIGlG~IG~~-vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      +|||||+|.+|+. ....+.+.-+++++ ++|++.... ..+.+.+            +.....++++++++.|+|++++
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~-~~~~~~~------------~~~~~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA-LPICESW------------RIPYADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH-HHHHHHH------------TCCBCSSHHHHHTTCSEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhh-hhhhhcc------------cccccccchhhhhhcccccccc
Confidence            6999999999986 45555333478876 578776542 2222222            1224578999999999999999


Q ss_pred             C
Q 022672          153 V  153 (294)
Q Consensus       153 P  153 (294)
                      |
T Consensus        70 p   70 (164)
T d1tlta1          70 S   70 (164)
T ss_dssp             C
T ss_pred             c
Confidence            9

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.33  E-value=0.00036  Score=55.15  Aligned_cols=94  Identities=15%  Similarity=0.115  Sum_probs=58.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcc-c-cccCCHHHH---h----
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-W-KRASSMDEV---L----  142 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~el---l----  142 (294)
                      .|.+|.|+|.|.||...++.+ +.+|++|+++|++..+. +. ...+       +..... . ....+.++.   +    
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~a-k~~Ga~vi~v~~~~~r~-~~-a~~~-------ga~~~~~~~~~~~~~~~~~~~~~~~~   95 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARSPRRL-EV-AKNC-------GADVTLVVDPAKEEESSIIERIRSAI   95 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HH-HHHT-------TCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEEcccccchhhHhhH-hhhcccccccchHHHHH-HH-HHHc-------CCcEEEeccccccccchhhhhhhccc
Confidence            467899999999999999875 89999999999886543 11 1111       111100 0 011122222   2    


Q ss_pred             -hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          143 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       143 -~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                       ...|+|+-++. .+.+.    ...++.++++..++.++
T Consensus        96 g~g~D~vid~~g-~~~~~----~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          96 GDLPNVTIDCSG-NEKCI----TIGINITRTGGTLMLVG  129 (170)
T ss_dssp             SSCCSEEEECSC-CHHHH----HHHHHHSCTTCEEEECS
T ss_pred             ccCCceeeecCC-ChHHH----HHHHHHHhcCCceEEEe
Confidence             24788888876 23222    55677788888888774

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.33  E-value=0.00036  Score=61.43  Aligned_cols=92  Identities=16%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      +++||||.|..++.-++.+...+.. +|.+|+++... .+.+.+..    ...+     .....+.++.+.+||+|+.+.
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~-~~~~~~~~----~~~~-----~~~~~~~~~a~~~aDiV~taT  195 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKA-AKKFVSYC----EDRG-----ISASVQPAEEASRCDVLVTTT  195 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHH-HHHHHHHH----HHTT-----CCEEECCHHHHTSSSEEEECC
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHH-HHHHHHHH----HhcC-----CccccchhhhhccccEEEEec
Confidence            5799999999999999987656776 79999988654 33333322    2211     112346678889999999987


Q ss_pred             CCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          153 VLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       153 Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |   .+.-++..+   .+|||+.++.++.
T Consensus       196 ~---s~~P~~~~~---~l~~G~hv~~iGs  218 (320)
T d1omoa_         196 P---SRKPVVKAE---WVEEGTHINAIGA  218 (320)
T ss_dssp             C---CSSCCBCGG---GCCTTCEEEECSC
T ss_pred             c---Ccccccchh---hcCCCCeEeecCC
Confidence            6   556677654   5799999999874

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.32  E-value=0.00049  Score=53.17  Aligned_cols=102  Identities=16%  Similarity=0.252  Sum_probs=59.3

Q ss_pred             CEEEEEcCChHHHHHHHHHh-hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~-~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .+|+|||.|.+|..+|-.|+ +++.-++..+|...........+.... . ... .... ....+ .+.+++||+|+++.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~-~-~~~-~~~~-~~~~~-~~~~~~adivvita   75 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHG-T-PFT-RRAN-IYAGD-YADLKGSDVVIVAA   75 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH-G-GGS-CCCE-EEECC-GGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccc-c-ccc-cccc-ccCCc-HHHhcCCCEEEEec
Confidence            47999999999999998654 356669999998765432222221100 0 001 1111 12233 34589999999986


Q ss_pred             CCCccccccc-------cH-------HHHhcCCCCcEEEEcCC
Q 022672          153 VLDKTTYHLI-------NK-------ERLATMKKEAILVNCSR  181 (294)
Q Consensus       153 Plt~~t~~li-------~~-------~~l~~mk~gailIN~aR  181 (294)
                      -. +...+.-       |.       +.+....|++++++++.
T Consensus        76 g~-~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN  117 (140)
T d1a5za1          76 GV-PQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN  117 (140)
T ss_dssp             CC-CCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             cc-ccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence            42 2222221       11       23445578999999864

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.29  E-value=0.00081  Score=51.92  Aligned_cols=105  Identities=17%  Similarity=0.201  Sum_probs=58.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .+|+|||.|.+|.++|..|+. +..-++..+|...........+.... ..... ........ +..+.+++||+|+++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~-~~~~~-~~~~i~~~-~~~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYES-GPVGL-FDTKVTGS-NDYADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTT-HHHHT-CCCEEEEE-SCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcc-cchhc-ccceEEec-CCHHHhcCCeEEEEEE
Confidence            479999999999999988742 23358999998765432211111000 00001 11112222 3345689999999986


Q ss_pred             C--CCcc-ccccc---cH-------HHHhcCCCCcEEEEcCC
Q 022672          153 V--LDKT-TYHLI---NK-------ERLATMKKEAILVNCSR  181 (294)
Q Consensus       153 P--lt~~-t~~li---~~-------~~l~~mk~gailIN~aR  181 (294)
                      -  ..+. ++.-+   |.       +.+....|++++++++.
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence            3  2221 11111   11       22334458999999865

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.25  E-value=0.00052  Score=55.03  Aligned_cols=114  Identities=17%  Similarity=0.125  Sum_probs=65.7

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  151 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~  151 (294)
                      ++||||+|.+|+..++.+...-++++++ +|++.... ..+...+       + .+.....+.+++++++  +.|+|+++
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~-~~~~~~~-------~-~~~~~~~~~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKA-KAFATAN-------N-YPESTKIHGSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHT-------T-CCTTCEEESSHHHHHHCTTCCEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCcccc-ccchhcc-------c-cccceeecCcHHHhhhccccceeeec
Confidence            7999999999999998874334788875 67765432 2222211       1 1112234578999984  57899999


Q ss_pred             cCCCccccccccHHHHhcCCCCcE-EEEc-CCCcccCHHHHHHHHHcCCcceE
Q 022672          152 PVLDKTTYHLINKERLATMKKEAI-LVNC-SRGPVIDEVALVEHLKQNPMFRV  202 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gai-lIN~-aRG~~vd~~aL~~aL~~g~i~ga  202 (294)
                      .|.  .++.-+   ....++.|.- ++.- .--.+-+.+.|.+..++..+.-.
T Consensus        74 tp~--~~h~~~---~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~  121 (184)
T d1ydwa1          74 LPT--SLHVEW---AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIM  121 (184)
T ss_dssp             CCG--GGHHHH---HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred             ccc--hhhcch---hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEEE
Confidence            983  333222   2333445533 3321 01122334556777777665443

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.23  E-value=0.00024  Score=57.34  Aligned_cols=79  Identities=15%  Similarity=0.149  Sum_probs=46.2

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCCchhHHHHHHhhhhhhhhhcCC-----CCccccccCCHHHHhhcCCEE
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGE-----QPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~aDiV  148 (294)
                      +|||.|||+||+.++|.+...-++++++. |+.+......... ++........     ...+.....++++++.++|+|
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHR-RGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHH-TTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcc-cCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            69999999999999998755557898875 4443322211111 1000000000     000111234678888999999


Q ss_pred             EEccCC
Q 022672          149 SLHPVL  154 (294)
Q Consensus       149 ~l~~Pl  154 (294)
                      +-|.|.
T Consensus        82 iecTG~   87 (178)
T d1b7go1          82 VDTTPN   87 (178)
T ss_dssp             EECCST
T ss_pred             EECCCC
Confidence            999984

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.22  E-value=0.0021  Score=54.05  Aligned_cols=119  Identities=23%  Similarity=0.331  Sum_probs=73.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh-------HHHHHHhhhhhhhhhcCCCCc-cccccCCHHHH
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-------RLEKFVTAYGQFLKANGEQPV-TWKRASSMDEV  141 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~el  141 (294)
                      .|.|+||.|-|+|++|+.+|+.|.+.+|++|++..-....       ..+.......   ........ +.. ..+.+++
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~---~~~~~~~~~~~~-~~~~~~i  104 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKN---EHGSVKDFPGAT-NITNEEL  104 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHH---HHSSSTTCTTSE-EECHHHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHH---hccccccCCCCe-eeccccc
Confidence            5999999999999999999998755789998875322110       0011111000   00000010 111 1245565


Q ss_pred             h-hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          142 L-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       142 l-~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      + .+||+++-|.-     .+.|+.+....++- .+++-.+-+.+.. ++ .+.|.+..|.
T Consensus       105 ~~~~~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~t~-ea-~~~L~~rgI~  156 (239)
T d1gtma1         105 LELEVDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPVTP-EA-DEILFEKGIL  156 (239)
T ss_dssp             HHSCCSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             ccccccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCCCH-HH-HHHHHHCCCE
Confidence            5 68999988763     67788888888865 4778888888754 34 4667666654

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.20  E-value=0.00037  Score=55.05  Aligned_cols=93  Identities=14%  Similarity=0.187  Sum_probs=55.2

Q ss_pred             CEEEEEcCChHHHH-HHHHHhhcC-CCEEEE-EcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-----hcC
Q 022672           74 QTVGVIGAGRIGSA-YARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  145 (294)
Q Consensus        74 ktvGIIGlG~IG~~-vA~~L~~~~-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~a  145 (294)
                      .++||||.|.||+. +.+.| +.+ ..++.+ .+++.......+.+.+       + .+.   ...++++++     .+.
T Consensus         5 irvaIIGaG~ig~~~~~~~l-~~~~~~el~avas~~~~~~~~~~a~~~-------~-i~~---~~~~~d~l~~~~~~~~i   72 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVL-RNAKYLEMGAMVGIDAASDGLARAQRM-------G-VTT---TYAGVEGLIKLPEFADI   72 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHCSSEEEEEEECSCTTCHHHHHHHHT-------T-CCE---ESSHHHHHHHSGGGGGE
T ss_pred             cEEEEEcCcHHHHHHHHHHH-hhCCcceEEEEEecchhccchhhhhhc-------C-Ccc---cccceeeeeeccccccc
Confidence            37999999999986 56766 554 456655 4665443221221111       1 111   223455554     468


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      |+|++++|...+..   .+..++..+.|.++|+-+.
T Consensus        73 DiVf~ATpag~h~~---~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          73 DFVFDATSASAHVQ---NEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             EEEEECSCHHHHHH---HHHHHHHHCTTCEEEECST
T ss_pred             CEEEEcCCchhHHH---hHHHHHHHHcCCEEEEccc
Confidence            89999998432322   2344566799999998864

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.20  E-value=0.00042  Score=54.03  Aligned_cols=104  Identities=15%  Similarity=0.230  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ..++|+|||.|.+|..+|..|+. ++.-++..+|...........+- ..-....  ... .....+.++ +++||+|++
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl-~~a~~~~--~~~-~~~~~d~~~-~~~adivvi   78 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDL-EDAQAFT--APK-KIYSGEYSD-CKDADLVVI   78 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHH-HGGGGGS--CCC-EEEECCGGG-GTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHH-hcccccc--CCc-eEeeccHHH-hccccEEEE
Confidence            45799999999999999988743 34468999998764332221111 0000111  111 122345555 589999999


Q ss_pred             ccCCCcccccc-----c--c-------HHHHhcCCCCcEEEEcCC
Q 022672          151 HPVLDKTTYHL-----I--N-------KERLATMKKEAILVNCSR  181 (294)
Q Consensus       151 ~~Plt~~t~~l-----i--~-------~~~l~~mk~gailIN~aR  181 (294)
                      +... +...+.     +  |       .+.+..-.|++++|+++.
T Consensus        79 tag~-~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          79 TAGA-PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             CCCC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             eccc-ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            8642 222111     1  1       122445577888888864

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.13  E-value=0.00079  Score=52.47  Aligned_cols=107  Identities=20%  Similarity=0.335  Sum_probs=60.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      -.+++|+|||.|.+|..+|..|+. +..-++..+|...........+ ... ........... ...+. +.+++||+|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D-l~~-~~~~~~~~~~~-~~~d~-~~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMD-FNH-GKVFAPKPVDI-WHGDY-DDCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-HHH-HTTSSSSCCEE-EECCG-GGTTTCSEEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhcc-Hhh-CccccCCCeEE-EECCH-HHhccceeEE
Confidence            357899999999999999987742 4455899999876542222111 110 00000111111 22333 5688999999


Q ss_pred             EccCCCcc---cc-ccc--cH-------HHHhcCCCCcEEEEcCC
Q 022672          150 LHPVLDKT---TY-HLI--NK-------ERLATMKKEAILVNCSR  181 (294)
Q Consensus       150 l~~Plt~~---t~-~li--~~-------~~l~~mk~gailIN~aR  181 (294)
                      ++......   ++ .++  |.       +.+....|++++|+++.
T Consensus        80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             EecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            87653221   11 111  11       22344467889999843

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.13  E-value=0.00045  Score=55.26  Aligned_cols=94  Identities=17%  Similarity=0.182  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-Hhh-----c
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLR-----E  144 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~-----~  144 (294)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|++..+...  ...+       +....-.....++.+ +.+     .
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~a-k~~Ga~~Vi~~d~~~~r~~~--a~~l-------Ga~~~i~~~~~~~~~~v~~~t~g~G   96 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGA-KLRGAGRIIGVGSRPICVEA--AKFY-------GATDILNYKNGHIEDQVMKLTNGKG   96 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HTTTCSCEEEECCCHHHHHH--HHHH-------TCSEEECGGGSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEEcCCcchhhhhhhh-hcccccccccccchhhhHHH--HHhh-------CccccccccchhHHHHHHHHhhccC
Confidence            477899999999999999985 78998 79999987654311  1111       111110011123333 222     2


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .|+|+-++.. +++   + .+.+..++|+..++-++
T Consensus        97 ~D~vid~~g~-~~~---~-~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          97 VDRVIMAGGG-SET---L-SQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             EEEEEECSSC-TTH---H-HHHHHHEEEEEEEEECC
T ss_pred             cceEEEccCC-HHH---H-HHHHHHHhcCCEEEEEe
Confidence            7899888873 222   2 55677788888888774

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=97.12  E-value=0.00029  Score=59.63  Aligned_cols=125  Identities=14%  Similarity=0.102  Sum_probs=83.5

Q ss_pred             CEEEEEcCCh--HHHHHHHH------HhhcCCCEEEEEcCCchhHHHHHH--------hhh----hhhhhhcCCCC----
Q 022672           74 QTVGVIGAGR--IGSAYARM------MVEGFKMNLIYYDLYQATRLEKFV--------TAY----GQFLKANGEQP----  129 (294)
Q Consensus        74 ktvGIIGlG~--IG~~vA~~------L~~~~g~~V~~~d~~~~~~~~~~~--------~~~----~~~~~~~~~~~----  129 (294)
                      ++++++|.|.  +|..+++.      + ...|..|+..|-..++..+...        .+.    ..........+    
T Consensus        41 ~~~~~~gagl~~~~~gi~~v~vs~~~f-a~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~  119 (242)
T d2b0ja2          41 HSSITYGAELLHLVPDVKEVIVSDPCF-AEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACI  119 (242)
T ss_dssp             CHHHHHHHHHHHHCTTCCEEEEECGGG-GSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEE
T ss_pred             eeeeeeeecHHhhhhchhhhhccchhh-hhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchh
Confidence            3466777776  77667662      3 2678888887766433211111        111    11111111111    


Q ss_pred             -------ccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          130 -------VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       130 -------~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                             .+.....+..|++++||+|++|+|..+.+..++ ++....+++|+++++++.........+.+.+++..+.
T Consensus       120 ~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         120 HLVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             ESSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             hcCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence                   223445889999999999999999666666677 7888999999999999999888888888888776554

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.09  E-value=0.00015  Score=58.11  Aligned_cols=77  Identities=14%  Similarity=0.122  Sum_probs=49.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      ..+.||+|.|+|.|..+++++..|. ..+.+|+.++|+.+.. +...+.+..    ..  .  .......+..+.++|+|
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~-~~~~~i~I~nR~~~~a-~~l~~~~~~----~~--~--~~~~~~~~~~~~~~dii   83 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLL-QAQQNIVLANRTFSKT-KELAERFQP----YG--N--IQAVSMDSIPLQTYDLV   83 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHH-HTTCEEEEEESSHHHH-HHHHHHHGG----GS--C--EEEEEGGGCCCSCCSEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHc-ccCceeeeccchHHHH-HHHHHHHhh----cc--c--cchhhhcccccccccee
Confidence            3688999999999999999999874 5668999999987542 222222211    00  0  00111111235788999


Q ss_pred             EEccCCC
Q 022672          149 SLHPVLD  155 (294)
Q Consensus       149 ~l~~Plt  155 (294)
                      +.|.|..
T Consensus        84 IN~tp~g   90 (171)
T d1p77a1          84 INATSAG   90 (171)
T ss_dssp             EECCCC-
T ss_pred             eeccccc
Confidence            9999843

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.07  E-value=0.00084  Score=52.92  Aligned_cols=110  Identities=15%  Similarity=0.190  Sum_probs=62.9

Q ss_pred             CEEEEEcCChHHHH-HHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEEEEc
Q 022672           74 QTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISLH  151 (294)
Q Consensus        74 ktvGIIGlG~IG~~-vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV~l~  151 (294)
                      .+|||||+|.+|+. ....+.+.-+.++.++|+++... ..+.+.+       +..    ....+.+++++ +.|+|+++
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~-------~~~----~~~~~~~~ll~~~iD~V~I~   69 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVL-GTLATRY-------RVS----ATCTDYRDVLQYGVDAVMIH   69 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHH-HHHHHHT-------TCC----CCCSSTTGGGGGCCSEEEEC
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHhc-------ccc----cccccHHHhcccccceeccc
Confidence            37999999999976 45665334477888899876442 2222222       111    12456777774 56999999


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHcCCc
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCS-RGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~a-RG~~vd~~aL~~aL~~g~i  199 (294)
                      +|  +.++.-+-...++.=+  .+|+.-= --.+-+...|.++.++..+
T Consensus        70 tp--~~~H~~~~~~al~~gk--~V~~EKP~~~~~~e~~~l~~~a~~~~~  114 (167)
T d1xeaa1          70 AA--TDVHSTLAAFFLHLGI--PTFVDKPLAASAQECENLYELAEKHHQ  114 (167)
T ss_dssp             SC--GGGHHHHHHHHHHTTC--CEEEESCSCSSHHHHHHHHHHHHHTTC
T ss_pred             cc--cccccccccccccccc--ccccCCCCcCCHHHHHHHHHHHHHcCC
Confidence            98  4444333344444222  3555421 1122344557777665544

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.06  E-value=0.00047  Score=55.17  Aligned_cols=81  Identities=19%  Similarity=0.150  Sum_probs=53.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .++.||+|.|+|.|..+++++..| ...| +|+.++|+.+.. +.+.+.+.....   ..........+++..+..+|++
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL-~~~~-~i~I~nR~~~ka-~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dli   87 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEKA-EALAKEIAEKLN---KKFGEEVKFSGLDVDLDGVDII   87 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHHH-HHHHHHHHHHHT---CCHHHHEEEECTTCCCTTCCEE
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHH-cccc-ceeeehhhhhHH-HHHHHHHHHhhc---hhhhhhhhhhhhhhccchhhhh
Confidence            368999999999999999999887 5666 899999986543 222222211110   0000011234566667889999


Q ss_pred             EEccCCC
Q 022672          149 SLHPVLD  155 (294)
Q Consensus       149 ~l~~Plt  155 (294)
                      +.+.|..
T Consensus        88 In~tp~g   94 (177)
T d1nvta1          88 INATPIG   94 (177)
T ss_dssp             EECSCTT
T ss_pred             ccCCccc
Confidence            9999853

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.02  E-value=0.00084  Score=51.36  Aligned_cols=99  Identities=19%  Similarity=0.141  Sum_probs=64.2

Q ss_pred             ccCCCEEEEEcC----------ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH-HHhhhhhhhhhcCCCCccccccCCH
Q 022672           70 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEK-FVTAYGQFLKANGEQPVTWKRASSM  138 (294)
Q Consensus        70 ~l~gktvGIIGl----------G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l  138 (294)
                      .+.+++|||+|+          +.-...+++.| ...|++|.+|||........ ....+    ..............++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L-~~~g~~V~~~DP~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   84 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEML-IGKGYELRIFDRNVEYARVHGANKEY----IESKIPHVSSLLVSDL   84 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECHHHHHHTTSSSCHHH----HHHTSHHHHTTBCSCH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHH-hhhhccccccCCCCCHHHHhhhhhhh----hhhccccccceeehhh
Confidence            467899999998          45677889887 68899999999865421100 00000    0000000112245789


Q ss_pred             HHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 022672          139 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       139 ~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      +++++.||+|+++++- ++    + .+....++++.+++++
T Consensus        85 ~e~i~~~D~ivi~t~h-~~----f-~~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          85 DEVVASSDVLVLGNGD-EL----F-VDLVNKTPSGKKLVDL  119 (136)
T ss_dssp             HHHHHHCSEEEECSCC-GG----G-HHHHHSCCTTCEEEES
T ss_pred             hhhhhhceEEEEEeCC-HH----H-HHHHHHhcCCCEEEEC
Confidence            9999999999999873 22    2 3455667788899997

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00059  Score=53.88  Aligned_cols=94  Identities=20%  Similarity=0.335  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhcCCEEEE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL  150 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l  150 (294)
                      .|.+|.|+|.|.+|...++. ++.+|+++++.+.+.+.. + +....       +.... ............+..|+++-
T Consensus        30 ~G~~VlI~GaG~vG~~a~ql-ak~~Ga~~i~~~~~~~~~-~-~a~~l-------Gad~~i~~~~~~~~~~~~~~~D~vid   99 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKL-AHAMGAHVVAFTTSEAKR-E-AAKAL-------GADEVVNSRNADEMAAHLKSFDFILN   99 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCEEEEEESSGGGH-H-HHHHH-------TCSEEEETTCHHHHHTTTTCEEEEEE
T ss_pred             CCCEEEEeccchHHHHHHHH-hhcccccchhhccchhHH-H-HHhcc-------CCcEEEECchhhHHHHhcCCCceeee
Confidence            47899999999999999987 489999999998876543 1 11111       11111 00000111223356888888


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ++.. +.+.    ...+..++++..++.++
T Consensus       100 ~~g~-~~~~----~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2         100 TVAA-PHNL----DDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             CCSS-CCCH----HHHHTTEEEEEEEEECC
T ss_pred             eeec-chhH----HHHHHHHhcCCEEEEec
Confidence            8863 2222    55677788888888764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.93  E-value=0.0012  Score=51.83  Aligned_cols=94  Identities=15%  Similarity=0.191  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH----HhhcCCE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREADV  147 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~aDi  147 (294)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.|+++.+. +. ..       ..+..........+..+    .....|.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~a-k~~G~~Vi~~~~~~~~~-~~-a~-------~~Ga~~~i~~~~~~~~~~~~~~~~g~~~   96 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYA-RAMGLHVAAIDIDDAKL-EL-AR-------KLGASLTVNARQEDPVEAIQRDIGGAHG   96 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HH-HH-------HTTCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEeeccccHHHHHHHH-HHcCCccceecchhhHH-Hh-hh-------ccCccccccccchhHHHHHHHhhcCCcc
Confidence            478999999999999999875 88999999999876542 11 11       11211110011122222    2233455


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ++.+... +++   + ...++.++++..++.++
T Consensus        97 ~i~~~~~-~~~---~-~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          97 VLVTAVS-NSA---F-GQAIGMARRGGTIALVG  124 (166)
T ss_dssp             EEECCSC-HHH---H-HHHHTTEEEEEEEEECC
T ss_pred             ccccccc-chH---H-HHHHHHhcCCcEEEEEE
Confidence            5555542 222   2 45667788888888764

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.92  E-value=0.0032  Score=49.90  Aligned_cols=81  Identities=14%  Similarity=0.155  Sum_probs=47.0

Q ss_pred             CEEEEEcCChHH--HHHHHHHhh--cCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           74 QTVGVIGAGRIG--SAYARMMVE--GFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        74 ktvGIIGlG~IG--~~vA~~L~~--~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+|.|||.|.+|  ..++..++.  .+. .++..+|........+..+............+.......+..+.+++||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            379999999776  445544321  233 489999987653222212211111111112233334557888999999999


Q ss_pred             EEccCC
Q 022672          149 SLHPVL  154 (294)
Q Consensus       149 ~l~~Pl  154 (294)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999863

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00048  Score=47.85  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=31.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      |||||+|-|..|+.++.. ++.+|.+++.+|+....
T Consensus         2 k~vgIlG~GQLgrMl~~A-a~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQA-GEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHH-HGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHH-HHHcCCEEEEEcCCCCC
Confidence            699999999999999998 58999999999987543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.89  E-value=0.0034  Score=48.83  Aligned_cols=107  Identities=16%  Similarity=0.216  Sum_probs=58.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ..+|+|||.|.+|+.+|-.|....=.++..||...........+.. ........ ...... .+..+.+++||+|+++.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~-~~~~~~~~-~~~v~~-~~~~~~~~~advvvita   79 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTS-HTNVMAYS-NCKVSG-SNTYDDLAGADVVIVTA   79 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHH-THHHHHTC-CCCEEE-ECCGGGGTTCSEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchh-hhccccCC-CcEEEe-cccccccCCCcEEEEec
Confidence            3589999999999999987643211389999987643222211110 00000010 111111 23345678999999987


Q ss_pred             CCCcc---c-----cc-cc--cHH-------HHhcCCCCcEEEEcCCC
Q 022672          153 VLDKT---T-----YH-LI--NKE-------RLATMKKEAILVNCSRG  182 (294)
Q Consensus       153 Plt~~---t-----~~-li--~~~-------~l~~mk~gailIN~aRG  182 (294)
                      -....   +     +- ++  |.+       .++...|++++++++..
T Consensus        80 g~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          80 GFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             SCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             ccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            63221   1     11 11  222       13444689999998653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.00024  Score=55.37  Aligned_cols=43  Identities=16%  Similarity=0.181  Sum_probs=36.4

Q ss_pred             CcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHH
Q 022672           68 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL  111 (294)
Q Consensus        68 g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~  111 (294)
                      ..+|.||++.|||.|.+|..-|+.| ..+|++|+++++......
T Consensus         8 ~~~l~gkrvLViGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l   50 (150)
T d1kyqa1           8 AHQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLHKSI   50 (150)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEECTTH
T ss_pred             heeeCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCHHH
Confidence            3479999999999999999999997 688999999987654433

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.86  E-value=0.00054  Score=54.01  Aligned_cols=35  Identities=14%  Similarity=0.299  Sum_probs=31.0

Q ss_pred             CEEEEE-cCChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           74 QTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        74 ktvGII-GlG~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      +||+|| |.|.||+++|++| ...|.+|..|+|++++
T Consensus         1 Mki~vigGaG~iG~alA~~l-a~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            479999 8999999999998 4889999999998654

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.82  E-value=0.0014  Score=50.58  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=54.2

Q ss_pred             CEEEEEcCChHHHHHHHHHh-hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~-~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.+|..+|-.|+ +++.-++..+|...........+     +...............-.+.+++||+|+++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~D-----l~~~~~~~~~~~~~~~~~~~~~~adivvita   76 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD-----INHGLPFMGQMSLYAGDYSDVKDCDVIVVTA   76 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH-----HTTSCCCTTCEEEC--CGGGGTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeee-----eccCcccCCCeeEeeCcHHHhCCCceEEEec
Confidence            47999999999999997764 24445899999776532111111     1111100000111122234578999999985


Q ss_pred             CCCc---cccc-cc--cH-------HHHhcCCCCcEEEEcCC
Q 022672          153 VLDK---TTYH-LI--NK-------ERLATMKKEAILVNCSR  181 (294)
Q Consensus       153 Plt~---~t~~-li--~~-------~~l~~mk~gailIN~aR  181 (294)
                      -...   +++- ++  |.       +.+....|++++|+++.
T Consensus        77 g~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          77 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             CC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             ccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence            4221   1111 11  11       22344568889999865

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0035  Score=49.42  Aligned_cols=93  Identities=17%  Similarity=0.259  Sum_probs=58.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------hc
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  144 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  144 (294)
                      .|.+|.|+|. |.+|....+. ++.+|++|++.+.++++. +. .       .+.+...+-.....++.+-+      ..
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~-a~~~G~~vi~~~~~~~~~-~~-~-------~~~Ga~~vi~~~~~~~~~~i~~~t~~~g   97 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQI-ARAYGLKILGTAGTEEGQ-KI-V-------LQNGAHEVFNHREVNYIDKIKKYVGEKG   97 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHH-HHHTTCEEEEEESSHHHH-HH-H-------HHTTCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred             CCCEEEEEecccccccccccc-ccccCccccccccccccc-cc-c-------cccCcccccccccccHHHHhhhhhccCC
Confidence            5789999995 9999999887 589999999988765432 21 1       11122111111122333332      23


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .|+|+-++.  .++   + ...++.|+++..+|.++
T Consensus        98 ~d~v~d~~g--~~~---~-~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          98 IDIIIEMLA--NVN---L-SKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             EEEEEESCH--HHH---H-HHHHHHEEEEEEEEECC
T ss_pred             ceEEeeccc--HHH---H-HHHHhccCCCCEEEEEe
Confidence            677777764  221   2 55678889998888885

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.76  E-value=0.0015  Score=51.01  Aligned_cols=94  Identities=15%  Similarity=0.250  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC----HHHHhhcCCE
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDEVLREADV  147 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell~~aDi  147 (294)
                      .|.+|.|+|.|.||...++.+ +..|.+|++.+++..+..  +..       ..+..........+    +.+...+.|.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a-~~~g~~v~~~~~~~~r~~--~~k-------~~Ga~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKLE--LAK-------ELGADLVVNPLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHHH--HHH-------HTTCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEeecccchhhhhHHH-hcCCCeEeccCCCHHHhh--hhh-------hcCcceecccccchhhhhcccccCCCce
Confidence            478999999999999988874 789999999998765431  111       11211111111122    3344455666


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ++.+.+ .+++.    ...+..++++..++.++
T Consensus        97 ~v~~~~-~~~~~----~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          97 AVVTAV-SKPAF----QSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             EEESSC-CHHHH----HHHHHHEEEEEEEEECC
T ss_pred             EEeecC-CHHHH----HHHHHHhccCCceEecc
Confidence            766654 23322    56778888998888874

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.73  E-value=0.0026  Score=49.05  Aligned_cols=104  Identities=18%  Similarity=0.292  Sum_probs=56.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh-hhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-GQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.+|.++|-.|+...-.+++.+|...........+-. ......   .........+.++ +++||+|+++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~---~~~~i~~~~d~~~-~~~advvvita   77 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEG---FDVRVTGTNNYAD-TANSDVIVVTS   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHT---CCCCEEEESCGGG-GTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccC---CCCEEEecCcHHH-hcCCCEEEEee
Confidence            589999999999999987653322489999987654322222210 000010   1111222345554 68999999988


Q ss_pred             CC--Cc-ccc-ccc--cH-------HHHhcCCCCcEEEEcCC
Q 022672          153 VL--DK-TTY-HLI--NK-------ERLATMKKEAILVNCSR  181 (294)
Q Consensus       153 Pl--t~-~t~-~li--~~-------~~l~~mk~gailIN~aR  181 (294)
                      ..  .+ .++ .++  |.       +.+....|+++++.++.
T Consensus        78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN  119 (142)
T d1uxja1          78 GAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  119 (142)
T ss_dssp             SCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred             eccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence            52  11 122 111  11       12344467888888754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.72  E-value=0.0034  Score=48.45  Aligned_cols=102  Identities=17%  Similarity=0.226  Sum_probs=58.2

Q ss_pred             CEEEEEcCChHHHHHHHHHh-hcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~-~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      .+|+|||.|.+|..+|-.|+ +++.-++..+|...........+- ..-.....  ........+.+ .+++||+|+++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl-~~a~~~~~--~~~i~~~~~~~-~~~daDvVVita   77 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDM-QHGSSFYP--TVSIDGSDDPE-ICRDADMVVITA   77 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHH-HHTGGGST--TCEEEEESCGG-GGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHH-HhccccCC--CceeecCCCHH-HhhCCcEEEEec
Confidence            37999999999999997663 355558999998765432221111 00000111  11222334554 578999999887


Q ss_pred             CCCcccccc-----c--cH-------HHHhcCCCCcEEEEcC
Q 022672          153 VLDKTTYHL-----I--NK-------ERLATMKKEAILVNCS  180 (294)
Q Consensus       153 Plt~~t~~l-----i--~~-------~~l~~mk~gailIN~a  180 (294)
                      -. +...+.     +  |.       ..+....|+++++.++
T Consensus        78 G~-~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          78 GP-RQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             CC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             cc-ccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            42 221111     1  11       2234457788888886

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.72  E-value=0.0033  Score=49.49  Aligned_cols=108  Identities=12%  Similarity=0.191  Sum_probs=61.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+..++|+|||.|.+|..+|-.|+. ++--++..+|...+.......+-... ..... .. ......+. +-+++||+|
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~-~~~~~-~~-~~~~~~d~-~~~~~adiV   92 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG-SLFLQ-TP-KIVADKDY-SVTANSKIV   92 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT-GGGCC-CS-EEEECSSG-GGGTTCSEE
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcc-ccccC-CC-eEEeccch-hhcccccEE
Confidence            4667899999999999999988742 33348999998765432222221100 00001 11 11223344 457899999


Q ss_pred             EEccCCCc---ccccc-c--cH-------HHHhcCCCCcEEEEcCC
Q 022672          149 SLHPVLDK---TTYHL-I--NK-------ERLATMKKEAILVNCSR  181 (294)
Q Consensus       149 ~l~~Plt~---~t~~l-i--~~-------~~l~~mk~gailIN~aR  181 (294)
                      +++.-...   +++-- +  |.       ..++...|++++|+++.
T Consensus        93 VitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          93 VVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            98764321   22211 1  11       12334477889998865

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.72  E-value=0.0028  Score=50.46  Aligned_cols=107  Identities=14%  Similarity=0.171  Sum_probs=59.3

Q ss_pred             EEEEEcCChHHHHH-HHHHhhcC-C-CEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 022672           75 TVGVIGAGRIGSAY-ARMMVEGF-K-MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  148 (294)
Q Consensus        75 tvGIIGlG~IG~~v-A~~L~~~~-g-~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  148 (294)
                      ++||||+|.+|+.+ +..+ +.+ + +++. ++|++.... +.+.+.+       +.    ...+.+++|+++  +.|+|
T Consensus         5 rigiIG~G~~g~~~h~~~l-~~~~~~~~i~~v~d~~~~~~-~~~~~~~-------~~----~~~~~~~~ell~~~~id~v   71 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPAL-KNLSHLFEITAVTSRTRSHA-EEFAKMV-------GN----PAVFDSYEELLESGLVDAV   71 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHH-HTTTTTEEEEEEECSSHHHH-HHHHHHH-------SS----CEEESCHHHHHHSSCCSEE
T ss_pred             EEEEEcCCHHHHHHHHHHH-HhCCCCeEEEEEEeccHhhh-hhhhccc-------cc----cceeeeeecccccccccee
Confidence            79999999999874 6665 444 3 5776 578776432 3322222       11    123578999986  47889


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHcCC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS-RGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a-RG~~vd~~aL~~aL~~g~  198 (294)
                      ++++|  +.++.-+-...++.=  -.+++.-= --.+-+...|.+..++..
T Consensus        72 ~I~tp--~~~h~~~~~~al~~g--k~V~~EKPl~~~~~e~~~l~~~~~~~~  118 (181)
T d1zh8a1          72 DLTLP--VELNLPFIEKALRKG--VHVICEKPISTDVETGKKVVELSEKSE  118 (181)
T ss_dssp             EECCC--GGGHHHHHHHHHHTT--CEEEEESSSSSSHHHHHHHHHHHHHCS
T ss_pred             ecccc--ccccccccccccccc--hhhhcCCCCcCCHHHHHHHHHHHHHhC
Confidence            99998  333332323333321  23444321 112233344666655544

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.72  E-value=0.012  Score=45.17  Aligned_cols=104  Identities=14%  Similarity=0.187  Sum_probs=59.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 022672           74 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  152 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  152 (294)
                      ++|+|||.|.+|.++|-.|+. +.--++..+|...+.......+- .. ...............+. |.+++||+|++..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl-~~-~~~~~~~~~~i~~~~d~-~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDL-AH-AAAGIDKYPKIVGGADY-SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHH-HH-HHHTTTCCCEEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHH-hh-hccccCCCCccccCCCH-HHhccccEEEEec
Confidence            479999999999999987642 33348999998765432221111 00 00001111112223344 5789999999887


Q ss_pred             CCCcccccc-----c--c-------HHHHhcCCCCcEEEEcCC
Q 022672          153 VLDKTTYHL-----I--N-------KERLATMKKEAILVNCSR  181 (294)
Q Consensus       153 Plt~~t~~l-----i--~-------~~~l~~mk~gailIN~aR  181 (294)
                      .. +.+.+.     +  |       .+.+....|.+++++++.
T Consensus        78 g~-~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          78 GL-ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             CC-CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             cc-cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence            42 222221     1  1       123445577899999876

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.72  E-value=0.0016  Score=51.99  Aligned_cols=80  Identities=23%  Similarity=0.218  Sum_probs=45.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCCchhHHHHHHhhhhhhhhhcCCC------CccccccCCHHHHhhcCC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQ------PVTWKRASSMDEVLREAD  146 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~ell~~aD  146 (294)
                      .+|||.|||+||+.++|.+...-.+++++. |+.+........ .++-........      ..+.....++.+++.++|
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAK-ELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHH-HTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhh-hcCceeecccccceeeecccCccccchhhhhhccCC
Confidence            479999999999999998754557887755 554332211111 110000000000      001112246778888899


Q ss_pred             EEEEccCC
Q 022672          147 VISLHPVL  154 (294)
Q Consensus       147 iV~l~~Pl  154 (294)
                      +|+-|.|.
T Consensus        82 vViEcTG~   89 (172)
T d2czca2          82 IIVDATPG   89 (172)
T ss_dssp             EEEECCST
T ss_pred             EEEECCCC
Confidence            99988873

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.002  Score=52.16  Aligned_cols=73  Identities=8%  Similarity=0.031  Sum_probs=49.1

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhcCCEE
Q 022672           72 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        72 ~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~aDiV  148 (294)
                      ..|+|.|+| .|.||+.+++.| ..-|.+|.+++|++.+....         ...+..  ..+.....+++++++++|+|
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~L-l~~g~~V~~~~R~~~~~~~~---------~~~~~~~~~gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPSE---------GPRPAHVVVGDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCGGGSCSS---------SCCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEEcChhhcccc---------cccccccccccccchhhHHHHhcCCCEE
Confidence            468999999 599999999987 46799999998876542110         000000  00111234577889999999


Q ss_pred             EEccCC
Q 022672          149 SLHPVL  154 (294)
Q Consensus       149 ~l~~Pl  154 (294)
                      +.++..
T Consensus        72 i~~~g~   77 (205)
T d1hdoa_          72 IVLLGT   77 (205)
T ss_dssp             EECCCC
T ss_pred             EEEecc
Confidence            988864

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.69  E-value=0.002  Score=53.28  Aligned_cols=73  Identities=11%  Similarity=0.122  Sum_probs=47.0

Q ss_pred             CCEEEEEcCChHHHH-HHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 022672           73 GQTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  148 (294)
Q Consensus        73 gktvGIIGlG~IG~~-vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  148 (294)
                      --+|||||+|.+|+. +...+...-+++|+ ++|+++... +.+.+.+       +........+.++++++.  +.|+|
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a-~~~~~~~-------~i~~~~~~~~~d~~ell~~~~iD~V  104 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKA-KIVAAEY-------GVDPRKIYDYSNFDKIAKDPKIDAV  104 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHH-HHHHHHT-------TCCGGGEECSSSGGGGGGCTTCCEE
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHH-HHHHHhh-------ccccccccccCchhhhcccccceee
Confidence            347999999999974 55665323378877 578876543 3332222       222222234578999985  57889


Q ss_pred             EEccC
Q 022672          149 SLHPV  153 (294)
Q Consensus       149 ~l~~P  153 (294)
                      ++++|
T Consensus       105 ~I~tp  109 (221)
T d1h6da1         105 YIILP  109 (221)
T ss_dssp             EECSC
T ss_pred             eeccc
Confidence            99998

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.68  E-value=0.0011  Score=52.59  Aligned_cols=95  Identities=11%  Similarity=0.083  Sum_probs=57.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----c
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  144 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  144 (294)
                      -.|.+|.|+|.|.||...++.+ +.+|.+ |++.|+++.+. +. ...+       +....-.....++.+-++     .
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~a-k~~g~~~v~~~~~~~~k~-~~-a~~~-------Ga~~~i~~~~~~~~~~i~~~t~gg   96 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAA-KVCGASIIIAVDIVESRL-EL-AKQL-------GATHVINSKTQDPVAAIKEITDGG   96 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHH-HHHTCSEEEEEESCHHHH-HH-HHHH-------TCSEEEETTTSCHHHHHHHHTTSC
T ss_pred             CCCCEEEEeCCCHHHhhhhhcc-cccccceeeeeccHHHHH-HH-HHHc-------CCeEEEeCCCcCHHHHHHHHcCCC
Confidence            3588999999999999999985 788885 55667765432 11 1111       111111111123333322     2


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .|+|+-|+. .+++.    +..++.++++..++.++
T Consensus        97 ~D~vid~~G-~~~~~----~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          97 VNFALESTG-SPEIL----KQGVDALGILGKIAVVG  127 (174)
T ss_dssp             EEEEEECSC-CHHHH----HHHHHTEEEEEEEEECC
T ss_pred             CcEEEEcCC-cHHHH----HHHHhcccCceEEEEEe
Confidence            688888876 22222    56677888888888775

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.65  E-value=0.0013  Score=52.47  Aligned_cols=79  Identities=19%  Similarity=0.167  Sum_probs=44.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCCchhHHHHHHhhhhhhhhhcCCCC-------ccccccCCHHHHhhcC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQP-------VTWKRASSMDEVLREA  145 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~ell~~a  145 (294)
                      ++|||-|||+||+.+.|.+...-++++++. |+.+........ .++-... .....       .+.....+..++++++
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~-~~~~~~~-~~~~~~~~~~~~~~~~v~g~~~~~~~~v   79 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMAL-KKGYDLY-VAIPERVKLFEKAGIEVAGTVDDMLDEA   79 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHH-HTTCCEE-ESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHH-hcCCceE-ecccccceeecccCcccCCChhHhhcCC
Confidence            589999999999999998754456887765 443332211110 0000000 00000       0011123567788899


Q ss_pred             CEEEEccCC
Q 022672          146 DVISLHPVL  154 (294)
Q Consensus       146 DiV~l~~Pl  154 (294)
                      |+|+-|.|.
T Consensus        80 DvViEcTG~   88 (171)
T d1cf2o1          80 DIVIDCTPE   88 (171)
T ss_dssp             SEEEECCST
T ss_pred             CEEEEccCC
Confidence            999999884

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.59  E-value=0.0018  Score=48.25  Aligned_cols=100  Identities=12%  Similarity=0.146  Sum_probs=69.0

Q ss_pred             CEEEEEcC----ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           74 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        74 ktvGIIGl----G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      |+|+|||.    |..|..+.+.| +.+|.+|+..+|+....                   .+...+.+++++-..-|+++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L-~~~g~~V~pVnP~~~~i-------------------~G~~~y~sl~~lp~~~D~vv   61 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDEI-------------------EGLKCYRSVRELPKDVDVIV   61 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGSCTTCCEEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHH-HHCCCEEEEEccccccc-------------------cCccccccchhccccceEEE
Confidence            68999995    78999999998 68999999998765331                   12344578888888889999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  200 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  200 (294)
                      +++| .+.+..++. +..+ +...++++..+   . ..+++.+.+++..+.
T Consensus        62 i~vp-~~~~~~~l~-~~~~-~g~k~v~~~~g---~-~~~~~~~~a~~~gi~  105 (116)
T d1y81a1          62 FVVP-PKVGLQVAK-EAVE-AGFKKLWFQPG---A-ESEEIRRFLEKAGVE  105 (116)
T ss_dssp             ECSC-HHHHHHHHH-HHHH-TTCCEEEECTT---S-CCHHHHHHHHHHTCE
T ss_pred             EEeC-HHHHHHHHH-HHHh-cCCceEEeccc---h-hhHHHHHHHHHcCCE
Confidence            9999 344445553 3333 44556777543   3 344567777665553

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.56  E-value=0.022  Score=44.41  Aligned_cols=107  Identities=15%  Similarity=0.149  Sum_probs=66.7

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      +|.|++|++||=| ++.++++..+ ..||+++....|..-...+.+..........   .........++++.++.+|+|
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~ea~~~advi   76 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAG-TKLGADVVVATPEGYEPDEKVIKWAEQNAAE---SGGSFELLHDPVKAVKDADVI   76 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHHHHH---HTCEEEEESCHHHHTTTCSEE
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHH-HHcCCeEEEecccccCCChHHHHHHHHhhhc---ccceEEEecCHHHHhhhccEE
Confidence            4789999999975 4667778776 5799999998775211111111000000000   011223457899999999999


Q ss_pred             EEccCCC----cc--------ccccccHHHHhcCCCCcEEEEcC
Q 022672          149 SLHPVLD----KT--------TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       149 ~l~~Plt----~~--------t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ..-.=..    ++        ....++.+.++.+|++++|..+.
T Consensus        77 y~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          77 YTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             EECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eecceeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            7643111    11        12456888999999999999884

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.017  Score=45.33  Aligned_cols=107  Identities=17%  Similarity=0.125  Sum_probs=65.2

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           70 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        70 ~l~gktvGIIGlG~-IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      +|.|+||++||=|+ +-++++..+ ..||+++....|....................+   ..+....++++.+..+|+|
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~-~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~---~~i~~~~d~~~~~~~advi   76 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSA-AKFGMHLQAATPKGYEPDASVTKLAEQYAKENG---TKLLLTNDPLEAAHGGNVL   76 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTT-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHH-HHcCCEEEEEeccccCCchHHHHHHHHHHhccC---CEEEEEcCHHHHHhhhhhe
Confidence            47899999999863 445555543 468999998876422111111110000111111   1133457899999999999


Q ss_pred             EEccCCCcc------------ccccccHHHHhcCCCCcEEEEcC
Q 022672          149 SLHPVLDKT------------TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       149 ~l~~Plt~~------------t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ....-....            ....++.+.++.++++++|..+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          77 ITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             EECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eeeceecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            876643221            12346778888999999999884

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.0045  Score=48.62  Aligned_cols=107  Identities=14%  Similarity=0.137  Sum_probs=59.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      +...+|+|||.|.+|..+|-.|+. +..-++..+|...........+-. . ........ ......+.+ .+++||+|+
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~-~-~~~~~~~~-~~~~~~d~~-~~~~adivv   92 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQ-H-GSLFLSTP-KIVFGKDYN-VSANSKLVI   92 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHH-H-TTTTCSCC-EEEEESSGG-GGTTEEEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHh-C-cchhcCCC-eEEeccchh-hhccccEEE
Confidence            555689999999999999987642 334489999987644322221210 0 00001111 112234544 458999998


Q ss_pred             EccCCC--c-ccc-ccc--cHHH-------HhcCCCCcEEEEcCC
Q 022672          150 LHPVLD--K-TTY-HLI--NKER-------LATMKKEAILVNCSR  181 (294)
Q Consensus       150 l~~Plt--~-~t~-~li--~~~~-------l~~mk~gailIN~aR  181 (294)
                      ++....  + +++ .++  |.+.       +....|++++++++.
T Consensus        93 itag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          93 ITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             ECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             EecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            876421  1 122 112  2222       233478889999865

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.41  E-value=0.0065  Score=46.88  Aligned_cols=77  Identities=23%  Similarity=0.292  Sum_probs=42.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCC--CEEEEEcCCchhH-HHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhcCCEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADVI  148 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g--~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV  148 (294)
                      ++|+|||. |.+|+.+|..|+ ..+  -++..+|...... .+.......... .......... ...+-.+.+++||+|
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~-~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~-~~~~~~~~~~~~~~~d~~~l~~aDvV   78 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLA-KEPFMKDLVLIGREHSINKLEGLREDIYDAL-AGTRSDANIYVESDENLRIIDESDVV   78 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TCTTCCEEEEEECGGGHHHHHHHHHHHHHHH-TTSCCCCEEEEEETTCGGGGTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCcccccccccchhhhHhhhcccccchhcc-cccccCCccccCCcchHHHhccceEE
Confidence            47999995 999999998874 445  4899999865321 121111111100 0011111111 112223567899999


Q ss_pred             EEcc
Q 022672          149 SLHP  152 (294)
Q Consensus       149 ~l~~  152 (294)
                      +++.
T Consensus        79 VitA   82 (145)
T d1hyea1          79 IITS   82 (145)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9984

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.39  E-value=0.027  Score=43.69  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=67.2

Q ss_pred             cCCCEEEEEcC--ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           71 LKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        71 l~gktvGIIGl--G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      |.|++|++||=  .++-+++...+ ..||+++....|..-.................+   ..+....++++.++.+|+|
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~-~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~---~~i~~~~d~~~ai~~aDvi   76 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEIVKETD---GSVSFTSNLEEALAGADVV   76 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHC---CEEEEESCHHHHHTTCSEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEecchhhhhhhhHHHHHHHHHhhcC---CceEEEecHHHhhhhhhhe
Confidence            67999999994  57999999886 579999998887532111111000000011111   1233457899999999999


Q ss_pred             EEccCCCcc------------ccc-cccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022672          149 SLHPVLDKT------------TYH-LINKERLATMKKEAILVNCS---RGPVIDEV  188 (294)
Q Consensus       149 ~l~~Plt~~------------t~~-li~~~~l~~mk~gailIN~a---RG~~vd~~  188 (294)
                      ..-.--...            ... ..+......+|++++|..+.   ||.=|+.+
T Consensus        77 yt~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~~  132 (161)
T d1vlva2          77 YTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYE  132 (161)
T ss_dssp             EECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHH
T ss_pred             eccceeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccchh
Confidence            775531100            111 22334445678899999875   45444443

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.33  E-value=0.0045  Score=48.71  Aligned_cols=94  Identities=15%  Similarity=0.182  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cC
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  145 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  145 (294)
                      .|.+|.|+|.|.+|...++.+ +.+|. +|++.|++..+. +..        ...+....-....+..++..+     ..
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a-~~~g~~~vv~~~~~~~k~-~~~--------~~~ga~~~i~~~~~~~~~~~~~~~~~g~  101 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLL-KVMTPATVIALDVKEEKL-KLA--------ERLGADHVVDARRDPVKQVMELTRGRGV  101 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESSHHHH-HHH--------HHTTCSEEEETTSCHHHHHHHHTTTCCE
T ss_pred             CCCEEEEeCCChHHHHHHHHH-HhhcCcccccccchhHHH-HHH--------hhcccceeecCcccHHHHHHHhhCCCCc
Confidence            478999999999999999875 67775 778888876432 211        111211111111122333332     37


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      |+|+-++.. +.+.    ...+..++++..++.++
T Consensus       102 d~vid~~g~-~~~~----~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         102 NVAMDFVGS-QATV----DYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEEEESSCC-HHHH----HHGGGGEEEEEEEEECC
T ss_pred             eEEEEecCc-chHH----HHHHHHHhCCCEEEEEe
Confidence            888888862 2222    55677888998888875

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.23  E-value=0.0085  Score=46.95  Aligned_cols=75  Identities=13%  Similarity=0.205  Sum_probs=45.4

Q ss_pred             CEEEEEcCChHHHHHHHH-Hhh---cC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           74 QTVGVIGAGRIGSAYARM-MVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~-L~~---~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .+|.|||.|.+|.+.+-. +++   .+ .-++..+|...... +...+.. ....   ..........+.++.+++||+|
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~-~~~~d~~-~~~~---~~~~~~~~t~~~~~~l~~aDvV   75 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQ-KIVVDFV-KRLV---KDRFKVLISDTFEGAVVDAKYV   75 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHH-HHHHHHH-HHHH---TTSSEEEECSSHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHH-HHHHHHH-Hhhh---ccCceEEEecCcccccCCCCEE
Confidence            479999999988776632 212   22 35899999876542 2211111 1111   1122233446788999999999


Q ss_pred             EEccC
Q 022672          149 SLHPV  153 (294)
Q Consensus       149 ~l~~P  153 (294)
                      +++.-
T Consensus        76 Vita~   80 (162)
T d1up7a1          76 IFQFR   80 (162)
T ss_dssp             EECCC
T ss_pred             EEecc
Confidence            99875

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.23  E-value=0.02  Score=45.69  Aligned_cols=107  Identities=14%  Similarity=0.200  Sum_probs=66.0

Q ss_pred             ccCCCEEEEEcC--ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           70 LLKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        70 ~l~gktvGIIGl--G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .|.|.+|++||=  -++..+++..+ ..||+++....|..-...+.+.+.........+   .......++++.++++|+
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~-~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~eai~~aDv   77 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG---AKLTLTEDPKEAVKGVDF   77 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSE
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHH-HHcCCEEEEEccHHHHhhhHHHHHHHHHhhccC---CeEEEEeChhhccccccE
Confidence            488999999994  48999999986 589999999988532111111111000011111   223445789999999999


Q ss_pred             EEEccCCC--ccc------------cccccHHHHhcCCCCcEEEEcC
Q 022672          148 ISLHPVLD--KTT------------YHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       148 V~l~~Plt--~~t------------~~li~~~~l~~mk~gailIN~a  180 (294)
                      |..-.=-.  ...            ..+.+......++++++|..+.
T Consensus        78 Vyt~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          78 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             EEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             EEeehhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            97654211  110            1222344556688999999885

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.17  E-value=0.049  Score=44.77  Aligned_cols=178  Identities=14%  Similarity=0.121  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch--
Q 022672           31 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA--  108 (294)
Q Consensus        31 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~--  108 (294)
                      +|--+++-+|+..|-.                     |+.|.+.+|.|+|.|.-|..+|+.+....--+++.+|+..-  
T Consensus         5 TaaV~LAgll~a~~~~---------------------g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~   63 (222)
T d1vl6a1           5 TAVVVSAAFLNALKLT---------------------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILN   63 (222)
T ss_dssp             HHHHHHHHHHHHHHHH---------------------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECC
T ss_pred             HHHHHHHHHHHHHHHh---------------------CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEE
Confidence            4556777777777622                     35699999999999999999999874444447999997621  


Q ss_pred             -----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          109 -----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       109 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                           .....+...+    ......   .....++.+++..+|++...-     +.+++.++.+..|.+..++.=.|+..
T Consensus        64 ~~r~~~~~~~~~~~~----~~~~~~---~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt  131 (222)
T d1vl6a1          64 ENDPETCLNEYHLEI----ARITNP---ERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPV  131 (222)
T ss_dssp             TTSGGGCSSHHHHHH----HHTSCT---TCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             cCcccccccHHHHHH----Hhhhcc---hhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCc
Confidence                 0111111111    111110   112357889999999866553     57888899999999999999999877


Q ss_pred             ccCHHHHHHHHHcCCcceEEeeCCCCCCCCCCCccCCCCeEEccCCCC-----CcHHHHHHHHHHHHHHHHHHH
Q 022672          184 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS-----ASKWTREGMATLAALNVLGKI  252 (294)
Q Consensus       184 ~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nviiTPHia~-----~t~~~~~~~~~~~~~nl~~~~  252 (294)
                      .--|.+  .+-..|+...|.     --|.+  | -+..|+++-|=++-     .+. ..+.|...+++.+.++.
T Consensus       132 ~~~e~~--~a~~~G~ai~At-----Gsp~~--p-~Q~NN~yiFPGiglGal~~~ar-itd~m~~aAA~alA~~~  194 (222)
T d1vl6a1         132 PEIDPE--LAREAGAFIVAT-----GRSDH--P-NQVNNLLAFPGIMKGAVEKRSK-ITKNMLLSAVEAIARSC  194 (222)
T ss_dssp             CSSCHH--HHHHTTCSEEEE-----SCTTS--S-SBCCGGGTHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHTS
T ss_pred             cchhhh--hheeccceEEec-----CCCCC--C-ccCcceeecchHHHHHHHhccc-cchHHHHHHHHHHHhcC
Confidence            655554  334556644332     22321  1 35577777775431     111 22455666666666543

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.17  E-value=0.005  Score=47.51  Aligned_cols=103  Identities=19%  Similarity=0.288  Sum_probs=59.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCc---cccccCCHHHHhhcCCE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV---TWKRASSMDEVLREADV  147 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~ell~~aDi  147 (294)
                      .+|+|||. |.+|+++|-.|+ ..+  -++..+|....... . .+     +. +.....   ......+..+.+++||+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~-~~~~~~elvLiDi~~~~~~-a-~D-----l~-~~~~~~~~~~~~~~~~~~~~~~~aDi   71 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTPGV-A-AD-----LS-HIETRATVKGYLGPEQLPDCLKGCDV   71 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHHHH-H-HH-----HT-TSSSSCEEEEEESGGGHHHHHTTCSE
T ss_pred             CeEEEECCCChHHHHHHHHHH-hCCccceEEEEeccccchh-h-HH-----Hh-hhhhhcCCCeEEcCCChHHHhCCCCE
Confidence            37999994 999999998874 344  37888997653211 1 11     11 111111   11223566788999999


Q ss_pred             EEEccCC--Cc-ccccc-c--cH-------HHHhcCCCCcEEEEcCCCcccCH
Q 022672          148 ISLHPVL--DK-TTYHL-I--NK-------ERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       148 V~l~~Pl--t~-~t~~l-i--~~-------~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      |+++.-.  .+ +++.- +  |.       +.+....|.++++.++.  .+|.
T Consensus        72 vVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN--PvD~  122 (144)
T d1mlda1          72 VVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNS  122 (144)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHH
T ss_pred             EEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhh
Confidence            9987652  22 12111 1  11       12334478899998854  4554

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.15  E-value=0.017  Score=44.67  Aligned_cols=99  Identities=19%  Similarity=0.297  Sum_probs=63.3

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHhhcCCCEEEEEcCCchh-HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           71 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        71 l~gktvGIIGl---G~IG~~vA~~L~~~~g~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      |.|++|+|||=   +++.++++..+ ..||++++.+-+.... ......       .   .....+....++++.++++|
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l-~~~g~~~~~~~p~~~~~~~~~~~-------~---~~~~~~~~~~d~~eai~~aD   69 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKEIL-------D---ELNYPVKEVENPFEVINEVD   69 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHHHH-------T---TCCSCEEEESCGGGTGGGCS
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHH-HHcCCeeEEEecccccccchhhc-------c---cCCCeEEEEeCHHHHhhcCC
Confidence            57999999997   55999999986 6899987654432211 111110       0   11223345578999999999


Q ss_pred             EEEEccCCCc-----------cccccccHHHHhcCCCCcEEEEcC
Q 022672          147 VISLHPVLDK-----------TTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       147 iV~l~~Plt~-----------~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +|...---..           .....++.+.++.++++++|..+.
T Consensus        70 vvy~~~~q~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          70 VLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             EEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             eEEEeeeeehhccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence            9865321111           012236788888889999888874

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.08  E-value=0.0056  Score=48.34  Aligned_cols=94  Identities=16%  Similarity=0.184  Sum_probs=60.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------hc
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  144 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  144 (294)
                      .|.+|.|.|. |.+|...++. ++.+|++|++.+++.++. + +.       ...+..........++.+-+      ..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iql-a~~~g~~vi~~~~~~~~~-~-~l-------~~~Ga~~vi~~~~~~~~~~v~~~t~~~g   94 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSI-AKMIGARIYTTAGSDAKR-E-ML-------SRLGVEYVGDSRSVDFADEILELTDGYG   94 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHH-HHHHTCEEEEEESSHHHH-H-HH-------HTTCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCCCcccccchh-hccccccceeeecccccc-c-cc-------ccccccccccCCccCHHHHHHHHhCCCC
Confidence            4789999885 9999999997 489999999887765432 2 11       12222221111223443332      34


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|+++-++.  .++   + .+.++.|+++..+|.++.
T Consensus        95 ~d~v~d~~g--~~~---~-~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_          95 VDVVLNSLA--GEA---I-QRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             EEEEEECCC--THH---H-HHHHHTEEEEEEEEECSC
T ss_pred             EEEEEeccc--chH---H-HHHHHHhcCCCEEEEEcc
Confidence            788888875  222   2 567788999999998854

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.06  E-value=0.026  Score=44.46  Aligned_cols=95  Identities=15%  Similarity=0.065  Sum_probs=57.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcc-ccccC-CHHHHh-----
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-WKRAS-SMDEVL-----  142 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~l~ell-----  142 (294)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|++.|++..+. + +...+       +..... ....+ ..+...     
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~a-k~~Ga~~Vi~~d~~~~r~-~-~a~~~-------Ga~~~i~~~~~~~~~~~~~~~~~~   96 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDINGEKF-P-KAKAL-------GATDCLNPRELDKPVQDVITELTA   96 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH-H-HHHHT-------TCSEEECGGGCSSCHHHHHHHHHT
T ss_pred             CCCCEEEEECCChHHHHHHHHH-HHhCCceeeeeccchHHH-H-HHHHh-------CCCcccCCccchhhhhhhHhhhhc
Confidence            3578999999999999999985 89998 688888876542 1 11111       211111 01111 222222     


Q ss_pred             hcCCEEEEccCCCccccccccHHHHhcCCCC-cEEEEcC
Q 022672          143 READVISLHPVLDKTTYHLINKERLATMKKE-AILVNCS  180 (294)
Q Consensus       143 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~g-ailIN~a  180 (294)
                      ...|+++-|+. .+++.    .+.+..++++ ..++-++
T Consensus        97 ~G~d~vie~~G-~~~~~----~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          97 GGVDYSLDCAG-TAQTL----KAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             SCBSEEEESSC-CHHHH----HHHHHTBCTTTCEEEECC
T ss_pred             CCCcEEEEecc-cchHH----HHHHHHhhcCCeEEEecC
Confidence            45799988886 23322    5666777775 5666663

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.04  E-value=0.013  Score=45.44  Aligned_cols=102  Identities=17%  Similarity=0.288  Sum_probs=63.8

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           71 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        71 l~gktvGIIGl---G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      |.|++|+|||=   +++.++++..+ ..||+++....|..-...+.....    ....+   .......++++.++.+|+
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~-~~~g~~~~~~~P~~~~~~~~~~~~----~~~~~---~~~~~~~d~~~av~~aDv   73 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVEE----LREKG---MKVVETTTLEDVIGKLDV   73 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHHH----HHHTT---CCEEEESCTHHHHTTCSE
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHH-HhcCCcEEEEccchhhcchHHHHH----HHhhc---ccceeecCHHHhhccCcE
Confidence            78999999998   68999999986 689999999887543222221111    11111   122345789999999999


Q ss_pred             EEEccCCCcc-----------ccccccHHHHhcCCCCcEEEEcC
Q 022672          148 ISLHPVLDKT-----------TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       148 V~l~~Plt~~-----------t~~li~~~~l~~mk~gailIN~a  180 (294)
                      |....-....           ....++.+.++.+++.+++..+.
T Consensus        74 vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~mHpl  117 (157)
T d1ml4a2          74 LYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  117 (157)
T ss_dssp             EEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             EEeeccccccccchhhHHhhcchhccCHHHHhhcCCCeEEecCC
Confidence            8766542111           01123455556666666666553

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.04  E-value=0.013  Score=44.59  Aligned_cols=102  Identities=10%  Similarity=0.115  Sum_probs=69.4

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           72 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        72 ~gktvGIIGl----G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .-|+|+|||.    +..|..+.+.| +.+|++++.+.++....                 .-.+...+.++.++-..-|+
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L-~~~g~~~~~v~~~~~~~-----------------~i~g~~~~~~l~~i~~~iD~   73 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE-----------------ELFGEEAVASLLDLKEPVDI   73 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS-----------------EETTEECBSSGGGCCSCCSE
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHH-hcCCCCceEEEeccccc-----------------eeeceecccchhhccCCCce
Confidence            4578999998    88999999998 78999999998764321                 01223445788888888999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  197 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  197 (294)
                      +++++| .+.+..++.+ ..+ +...++++..+   ..+++....+.+.|
T Consensus        74 v~v~~p-~~~v~~~v~~-~~~-~g~k~i~~q~G---~~~~e~~~~a~~~G  117 (136)
T d1iuka_          74 LDVFRP-PSALMDHLPE-VLA-LRPGLVWLQSG---IRHPEFEKALKEAG  117 (136)
T ss_dssp             EEECSC-HHHHTTTHHH-HHH-HCCSCEEECTT---CCCHHHHHHHHHTT
T ss_pred             EEEecc-HHHHHHHHHH-HHh-hCCCeEEEecC---ccCHHHHHHHHHcC
Confidence            999999 3555666543 333 45667888654   34555444444443

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.01  E-value=0.029  Score=44.53  Aligned_cols=103  Identities=16%  Similarity=0.227  Sum_probs=61.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh--HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .+|||+|. |-.|+.+.+.|++.-..++...-.+...  .......    ..    .... .....+.+++..++|++++
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p----~~----~~~~-~~~~~~~~~~~~~~dvvf~   72 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFP----ST----LENS-ILSEFDPEKVSKNCDVLFT   72 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCG----GG----CCCC-BCBCCCHHHHHHHCSEEEE
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCc----hh----hccc-cccccCHhHhccccceEEE
Confidence            37999998 9999999999854346677665332211  1111100    00    0111 1123567788889999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE  192 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~  192 (294)
                      ++|... ..     +..... .+..+||.|-.==.+....++
T Consensus        73 a~p~~~-s~-----~~~~~~-~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          73 ALPAGA-SY-----DLVREL-KGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             CCSTTH-HH-----HHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred             ccccHH-HH-----HHHHhh-ccceEEecCccccccchhhHH
Confidence            999432 22     333333 578999998554454444444

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.00  E-value=0.0046  Score=48.71  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  109 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~  109 (294)
                      .+++|.|+|.|..+++++..| +..|+ +|..++|+.+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL-~~~g~~~I~I~nR~~~k   53 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKT   53 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHH-HHCCCCEEEEecccHHH
Confidence            578999999999999999987 57887 68899998754

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.98  E-value=0.0069  Score=51.23  Aligned_cols=120  Identities=14%  Similarity=0.152  Sum_probs=66.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEc--------CCchh--HHHHHHhhhhhhhhhcCCCC------ccc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD--------LYQAT--RLEKFVTAYGQFLKANGEQP------VTW  132 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d--------~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~  132 (294)
                      .+|.|+||.|=|+|++|+.+|+.| ...|++|++.+        +..-.  ...++....   .......-      .+.
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L-~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~---~~~~~~~~~~~~~~~~~  107 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKL-AELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEM---RASGRNKVQDYADKFGV  107 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHH-HHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHH---HHHCCCCTHHHHHHHTC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHH---hhhcCcchhhhhhhcCc
Confidence            368999999999999999999998 68999998653        21100  000000000   00000000      000


Q ss_pred             cccCCHHH-HhhcCCEEEEccCCCccccccccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcCCc
Q 022672          133 KRASSMDE-VLREADVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       133 ~~~~~l~e-ll~~aDiV~l~~Plt~~t~~li~~~~l~~mk~-ga-ilIN~aRG~~vd~~aL~~aL~~g~i  199 (294)
                      ... +-++ +-.+||+++-|     .+.+.|+.+..+.++. ++ +++-.+.+.+-++. ....|+++.|
T Consensus       108 ~~~-~~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea-~~~ll~~~gI  170 (255)
T d1bgva1         108 QFF-PGEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEA-LRFLMQQPNM  170 (255)
T ss_dssp             EEE-ETCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHH-HHHHHHCTTC
T ss_pred             eee-chhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchHH-HHHHHHhcCC
Confidence            000 1112 22578988755     4577788877776653 33 77777777766654 3334555444

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.97  E-value=0.0052  Score=48.38  Aligned_cols=102  Identities=25%  Similarity=0.218  Sum_probs=55.9

Q ss_pred             EEEEEcCChHHHHHHHHHhhcC----CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 022672           75 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  148 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  148 (294)
                      +|||||+|.+|+..++.+ +..    ...+...+.....                  .........+++|++.  +.|+|
T Consensus         9 kv~iIG~G~~g~~h~~~l-~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~e~l~~~~iD~V   69 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDL-KDPRSAAFLNLIGFVSRREL------------------GSLDEVRQISLEDALRSQEIDVA   69 (172)
T ss_dssp             EEEEECCSHHHHHHHHHH-TSHHHHTTEEEEEEECSSCC------------------CEETTEEBCCHHHHHHCSSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHH-HhCCCCcEEEEEeccchHHH------------------HHhhccCcCCHHHHHhCCCcchh
Confidence            799999999999988876 332    2333333222110                  0011123458999986  55889


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHcCCc
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS-RGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a-RG~~vd~~aL~~aL~~g~i  199 (294)
                      ++++|  ++++.-+-...++.=+  .+++.-= --.+-+.+.|.+..++..+
T Consensus        70 ~I~tp--~~~H~~~~~~al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~  117 (172)
T d1lc0a1          70 YICSE--SSSHEDYIRQFLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGR  117 (172)
T ss_dssp             EECSC--GGGHHHHHHHHHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred             hhccc--ccccccccccccccch--hhhcCCCccccHHHHHHHHHHHHHcCC
Confidence            99998  4444434344444322  3555421 1234445556665544443

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.95  E-value=0.01  Score=45.46  Aligned_cols=101  Identities=10%  Similarity=0.136  Sum_probs=68.1

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           72 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        72 ~gktvGIIGl----G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .-|+|+|||.    +..|..+++.| +.+|.+|+..+|+....                   .+...+.+++++-..-|+
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L-~~~g~~v~pVnP~~~~i-------------------~G~~~~~sl~dlp~~iD~   77 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEEV-------------------LGRKCYPSVLDIPDKIEV   77 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGCSSCCSE
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHH-HHCCCEEEEECCccccc-------------------CCCcccccccccCccceE
Confidence            4679999997    67999999998 68999999999865321                   123345789998889999


Q ss_pred             EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 022672          148 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  199 (294)
Q Consensus       148 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i  199 (294)
                      +++++| .+.+..++ ++..+ +....+++..+   ..+++. .+.+++..+
T Consensus        78 v~i~vp-~~~~~~~~-~e~~~-~g~k~v~~~~G---~~~ee~-~~~a~~~gi  122 (139)
T d2d59a1          78 VDLFVK-PKLTMEYV-EQAIK-KGAKVVWFQYN---TYNREA-SKKADEAGL  122 (139)
T ss_dssp             EEECSC-HHHHHHHH-HHHHH-HTCSEEEECTT---CCCHHH-HHHHHHTTC
T ss_pred             EEEEeC-HHHHHHHH-HHHHH-hCCCEEEEecc---ccCHHH-HHHHHHCCC
Confidence            999999 23334444 33333 35567777654   345544 444444334

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=95.85  E-value=0.015  Score=44.94  Aligned_cols=93  Identities=18%  Similarity=0.189  Sum_probs=48.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhc--C-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEG--F-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~--~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ++|||||. |-.|+.+.++|...  + ..++..+..+.....         ... ............+ .+.++++|+++
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk---------~~~-~~~~~~~~~~~~~-~~~~~~~DvvF   69 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP---------APN-FGKDAGMLHDAFD-IESLKQLDAVI   69 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSB---------CCC-SSSCCCBCEETTC-HHHHTTCSEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccc---------ccc-cCCcceeeecccc-hhhhccccEEE
Confidence            47999997 99999999876432  2 356665543321100         000 0001111111122 35578999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +|+|. ..+..+. ....+ -..++++|+.|
T Consensus        70 ~alp~-~~s~~~~-~~l~~-~g~~~~VIDlS   97 (147)
T d1mb4a1          70 TCQGG-SYTEKVY-PALRQ-AGWKGYWIDAA   97 (147)
T ss_dssp             ECSCH-HHHHHHH-HHHHH-TTCCSEEEESS
T ss_pred             EecCc-hHHHHHh-HHHHH-cCCceEEEeCC
Confidence            99993 2223222 22222 23345677776

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.74  E-value=0.015  Score=45.96  Aligned_cols=79  Identities=14%  Similarity=0.222  Sum_probs=48.5

Q ss_pred             CCEEEEEcCChHHHHHHH--HHh--hcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           73 GQTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~--~L~--~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      +.+|+|||.|.+|...+-  .++  ..+ +-++..+|..++.......+ . .................+++|.+++||+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~-~-~~~~~~~~~~~~i~~~td~~eaL~dad~   79 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI-A-KKYVEEVGADLKFEKTMNLDDVIIDADF   79 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH-H-HHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHH-H-HHHHHhcCCCeEEEEeCChhhcccCCCe
Confidence            468999999999976432  122  233 45999999986543211111 1 1111112233444556789999999999


Q ss_pred             EEEccC
Q 022672          148 ISLHPV  153 (294)
Q Consensus       148 V~l~~P  153 (294)
                      |+++.-
T Consensus        80 Vv~~~~   85 (171)
T d1obba1          80 VINTAM   85 (171)
T ss_dssp             EEECCC
T ss_pred             Eeeecc
Confidence            998753

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.027  Score=43.23  Aligned_cols=104  Identities=23%  Similarity=0.269  Sum_probs=58.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhh--cCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcc---ccccCCHHHHhhcCCE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT---WKRASSMDEVLREADV  147 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~--~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ell~~aDi  147 (294)
                      .+|+|||. |.+|+++|-.|+.  .+.-++..+|..+.. .....+     +.. ......   .....+. +.+++||+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~-~g~a~D-----l~h-~~~~~~~~~~~~~~~~-~~~~~aDv   72 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVT-PGVAVD-----LSH-IPTAVKIKGFSGEDAT-PALEGADV   72 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTH-HHHHHH-----HHT-SCSSCEEEEECSSCCH-HHHTTCSE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccc-hhHHHH-----HHC-CccccCCcEEEcCCCc-cccCCCCE
Confidence            47999995 9999999987643  467799999975432 111111     111 111111   1122334 56889999


Q ss_pred             EEEccCC--Ccc-cc-ccc--cH-------HHHhcCCCCcEEEEcCCCcccCH
Q 022672          148 ISLHPVL--DKT-TY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDE  187 (294)
Q Consensus       148 V~l~~Pl--t~~-t~-~li--~~-------~~l~~mk~gailIN~aRG~~vd~  187 (294)
                      |+++.-.  .+. ++ .++  |.       +.+....|++++|.++.  .+|.
T Consensus        73 vvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN--PvD~  123 (145)
T d2cmda1          73 VLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN--PVNT  123 (145)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--SHHH
T ss_pred             EEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC--CchH
Confidence            9998742  221 11 111  11       23344567888998854  4454

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.64  E-value=0.018  Score=40.46  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=31.4

Q ss_pred             CEEEEEcCChHHH-HHHHHHhhcCCCEEEEEcCCchhHHH
Q 022672           74 QTVGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQATRLE  112 (294)
Q Consensus        74 ktvGIIGlG~IG~-~vA~~L~~~~g~~V~~~d~~~~~~~~  112 (294)
                      ++|=|||.|.+|. ++|+.| +..|+.|.++|.......+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L-~~~G~~VsGSD~~~~~~t~   40 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHE-FSNGNDVYGSNIEETERTA   40 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSSCCHHHH
T ss_pred             cEEEEEeECHHHHHHHHHHH-HhCCCeEEEEeCCCChhHH
Confidence            5788999999998 678886 7999999999988655433

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.61  E-value=0.0082  Score=46.85  Aligned_cols=94  Identities=16%  Similarity=0.172  Sum_probs=56.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC-HHHHh-----h
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVL-----R  143 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell-----~  143 (294)
                      .|.+|.|+|. |.+|...++.+ +..| .+|++.+++.....  +...+       +..........+ .+++.     .
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~-~~~g~~~V~~~~~~~~~~~--~~~~~-------Ga~~~i~~~~~~~~~~~~~~~~~~   96 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIA-KAVSGATIIGVDVREEAVE--AAKRA-------GADYVINASMQDPLAEIRRITESK   96 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHHTCCEEEEEESSHHHHH--HHHHH-------TCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEEeccccceeeeeecc-cccccccccccccchhhHH--HHHHc-------CCceeeccCCcCHHHHHHHHhhcc
Confidence            4788999995 99999999876 6677 58999998765421  11111       111110011122 23333     2


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ..|+++-|.. .+++.    +..+..++++..++.++
T Consensus        97 ~~d~vid~~g-~~~~~----~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          97 GVDAVIDLNN-SEKTL----SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             CEEEEEESCC-CHHHH----TTGGGGEEEEEEEEECC
T ss_pred             cchhhhcccc-cchHH----HhhhhhcccCCEEEEec
Confidence            3788888775 22222    34567788888888773

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.59  E-value=0.013  Score=44.93  Aligned_cols=103  Identities=15%  Similarity=0.190  Sum_probs=55.8

Q ss_pred             CEEEEEc-CChHHHHHHHHHhh-cCCCEEEEEcCCchh-HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIG-AGRIGSAYARMMVE-GFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~-~~g~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .+|+||| .|.+|+.+|-.|.. ++.-++..+|..... ..+...........  ....... ...+.++ +++||+|++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~--~~~~~~i-~~~~~~~-~~~aDiVvi   76 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA--YDSNTRV-RQGGYED-TAGSDVVVI   76 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT--TTCCCEE-EECCGGG-GTTCSEEEE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccc--ccCCceE-eeCCHHH-hhhcCEEEE
Confidence            3799999 69999999987642 344489999964321 11111111111000  0111111 2234444 589999998


Q ss_pred             ccCCCcccccc-----c--cH-------HHHhcCCCCcEEEEcCC
Q 022672          151 HPVLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSR  181 (294)
Q Consensus       151 ~~Plt~~t~~l-----i--~~-------~~l~~mk~gailIN~aR  181 (294)
                      +.-. +...++     +  |.       +.++...|+++++.++.
T Consensus        77 taG~-~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          77 TAGI-PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             CCCC-CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             eccc-ccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence            7542 222221     1  11       23455678889888854

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.018  Score=44.32  Aligned_cols=110  Identities=21%  Similarity=0.296  Sum_probs=57.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhc--C-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEG--F-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~--~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      |+|||||. |.+|+.+.++|...  | -.++..+..+......         ... ...........+. +.++++|+++
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~---------~~~-~~~~~~~~~~~~~-~~~~~~DivF   70 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA---------PSF-GGTTGTLQDAFDL-EALKALDIIV   70 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC---------CGG-GTCCCBCEETTCH-HHHHTCSEEE
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc---------ccc-cCCceeeecccch-hhhhcCcEEE
Confidence            58999998 99999999865332  2 3466655443321100         000 0001111111222 3568999999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCCCc-----------ccCHHHHHHHHHcC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-----------VIDEVALVEHLKQN  197 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~-----------~vd~~aL~~aL~~g  197 (294)
                      +|+|. +....+  ...+..-..+.++|+.|.--           =|+.+.|..++++|
T Consensus        71 ~a~~~-~~s~~~--~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g  126 (146)
T d1t4ba1          71 TCQGG-DYTNEI--YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG  126 (146)
T ss_dssp             ECSCH-HHHHHH--HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred             EecCc-hHHHHh--hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence            99993 222222  12222223346777776322           13555676777654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.57  E-value=0.017  Score=41.23  Aligned_cols=40  Identities=18%  Similarity=0.177  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcCChHHH-HHHHHHhhcCCCEEEEEcCCchhHH
Q 022672           71 LKGQTVGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQATRL  111 (294)
Q Consensus        71 l~gktvGIIGlG~IG~-~vA~~L~~~~g~~V~~~d~~~~~~~  111 (294)
                      -..|++=|||.|.+|. ++|+.| +..|++|.++|.......
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L-~~~G~~VsGSD~~~~~~~   46 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEIL-LNEGYQISGSDIADGVVT   46 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHH-HHHTCEEEEEESCCSHHH
T ss_pred             hhCCEEEEEEECHHHHHHHHHHH-HhCCCEEEEEeCCCChhh
Confidence            3568899999999995 558887 689999999998755433

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.55  E-value=0.011  Score=44.54  Aligned_cols=108  Identities=17%  Similarity=0.155  Sum_probs=68.8

Q ss_pred             cCCCEEEEEcC----ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           71 LKGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        71 l~gktvGIIGl----G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      ++=++|+|||.    |..|..+.+.|...+..+|+..+|.....                   .+...+.+++|+-..-|
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-------------------~G~~~y~sl~dlp~~vD   66 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-------------------QGVKAYKSVKDIPDEID   66 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-------------------TTEECBSSTTSCSSCCS
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-------------------CCeEeecchhhcCCCCc
Confidence            56689999997    89999999998433447999999875431                   22345678888888899


Q ss_pred             EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcc-----cCHHHHHHHHHcCCc
Q 022672          147 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-----IDEVALVEHLKQNPM  199 (294)
Q Consensus       147 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-----vd~~aL~~aL~~g~i  199 (294)
                      ++++++| .+.+..++ ++..+.=-++++++..+-++.     ..+++|.+..++..+
T Consensus        67 lvvi~vp-~~~~~~~~-~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gi  122 (129)
T d2csua1          67 LAIIVVP-KRFVKDTL-IQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM  122 (129)
T ss_dssp             EEEECSC-HHHHHHHH-HHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred             eEEEecC-hHHhHHHH-HHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCC
Confidence            9999999 34555555 333332233444544443332     223345555555433

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0056  Score=47.16  Aligned_cols=91  Identities=8%  Similarity=-0.004  Sum_probs=51.1

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCC---HHH-HhhcCCEEEE
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDE-VLREADVISL  150 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~e-ll~~aDiV~l  150 (294)
                      .+-|+|+|.+|+.+++.| ...|.+|++.|..+....+.....     ...+ ..+-.-...+   |++ -+.+||.|++
T Consensus         5 HiII~G~g~~g~~l~~~L-~~~~~~v~vId~d~~~~~~~~~~~-----~~~~-~~vi~Gd~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           5 HFIVCGHSILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQR-----LGDN-ADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHHH-----HCTT-CEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHH-HHcCCCEEEEeccchhHHHHHHHh-----hcCC-cEEEEccCcchHHHHHhccccCCEEEE
Confidence            488999999999999998 678999998887654322211110     0001 0000000112   222 2468999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCc
Q 022672          151 HPVLDKTTYHLINKERLATMKKEA  174 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~ga  174 (294)
                      +.+..  ...+.-....+.+.|..
T Consensus        78 ~~~~d--~~n~~~~~~~r~~~~~~   99 (153)
T d1id1a_          78 LSDND--ADNAFVVLSAKDMSSDV   99 (153)
T ss_dssp             CSSCH--HHHHHHHHHHHHHTSSS
T ss_pred             ccccH--HHHHHHHHHHHHhCCCC
Confidence            98843  33333344445555554

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.50  E-value=0.019  Score=48.23  Aligned_cols=39  Identities=26%  Similarity=0.286  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      +|+||++.|.|. +.||+++|+.| ..-|++|+..+++...
T Consensus         3 ~L~gK~alITGas~GIG~aia~~l-a~~G~~V~i~~r~~~~   42 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEEL-AGLGARVYTCSRNEKE   42 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            689999999995 78999999998 5889999999987643

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.50  E-value=0.051  Score=42.69  Aligned_cols=39  Identities=23%  Similarity=0.213  Sum_probs=33.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhH
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR  110 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~  110 (294)
                      -.|.+|.|+|.|.+|...++.+ +.+|+ +|++.|++..+.
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~a-k~~G~~~Vi~vd~~~~kl   67 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGC-KSAGASRIIGIDLNKDKF   67 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH
T ss_pred             CCCCEEEEECCCchhHHHHHHH-HHcCCceEEEecCcHHHH
Confidence            3588999999999999999985 78885 899999887653

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.43  E-value=0.0065  Score=51.34  Aligned_cols=43  Identities=16%  Similarity=0.189  Sum_probs=35.5

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHH
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLE  112 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~  112 (294)
                      ++|.||++-|.|. +.||+++|+.|+ ..|++|+..+++.+...+
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la-~~G~~Vv~~~r~~~~~~~   46 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFA-TEKAKVVVNYRSKEDEAN   46 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcHHHHH
Confidence            3699999999986 789999999985 789999999887654333

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.38  E-value=0.0095  Score=50.33  Aligned_cols=45  Identities=22%  Similarity=0.182  Sum_probs=36.8

Q ss_pred             CcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHH
Q 022672           68 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEK  113 (294)
Q Consensus        68 g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~  113 (294)
                      ..+|.||++.|.|. +.||+++|+.| ...|++|+..+++.....+.
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~l-a~~Ga~Vvi~~~~~~~~~~~   58 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMEL-GRRGCKVIVNYANSTESAEE   58 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCchHHHHH
Confidence            35799999999995 89999999998 47899999988776544443

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.35  E-value=0.049  Score=43.19  Aligned_cols=103  Identities=15%  Similarity=0.179  Sum_probs=56.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch-h-HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA-T-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .+|||||. |-.|+++.|+|...-.+++.....+.. . .......    +...   ... .......++.+.++|++++
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~----~~~~---~~~-~~~~~~~~~~~~~~Dvvf~   77 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFP----HLIT---QDL-PNLVAVKDADFSNVDAVFC   77 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCG----GGTT---SCC-CCCBCGGGCCGGGCSEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccc----cccc---ccc-ccchhhhhhhhcccceeee
Confidence            46999998 999999999985434567665532221 1 1111111    0100   010 1112233456789999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL  190 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL  190 (294)
                      ++|....      .+....+.....+|+.+-+.-....+.
T Consensus        78 alp~~~s------~~~~~~l~~~~~~v~~~~~~~~~~~~~  111 (183)
T d2cvoa1          78 CLPHGTT------QEIIKGLPQELKIVDLSADFRLRDINE  111 (183)
T ss_dssp             CCSSSHH------HHHHHTSCSSCEEEECSSTTTCSCHHH
T ss_pred             ccccchH------HHHHHHHHhcCcccccchhhhccccch
Confidence            9994322      444445555666666655544443333

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.33  E-value=0.028  Score=47.67  Aligned_cols=40  Identities=10%  Similarity=0.223  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .+|.||++.|.|. |.||+++|+.| ...|++|++.|++...
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~l-a~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLL-SSLGAQCVIASRKMDV   61 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            4799999999985 89999999998 4789999999987654

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.33  E-value=0.025  Score=44.48  Aligned_cols=76  Identities=12%  Similarity=0.174  Sum_probs=45.7

Q ss_pred             CEEEEEcCChHHHHHH--HHHhh--cC-CCEEEEEcCCchhHH--HHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           74 QTVGVIGAGRIGSAYA--RMMVE--GF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA--~~L~~--~~-g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      -+|.|||.|.+|...+  ..++.  .+ +-++..+|...+...  ....+.+    ......+.......+.+|.+++||
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~eal~~AD   79 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVF----IREKAPDIEFAATTDPEEAFTDVD   79 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHH----HHHHCTTSEEEEESCHHHHHSSCS
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHH----HHHhCCCcceEecCChhhccCCCC
Confidence            4799999999876533  33221  22 247999998765422  1111111    111122333445578999999999


Q ss_pred             EEEEccC
Q 022672          147 VISLHPV  153 (294)
Q Consensus       147 iV~l~~P  153 (294)
                      +|+++.-
T Consensus        80 ~Vvitag   86 (167)
T d1u8xx1          80 FVMAHIR   86 (167)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999974

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.29  E-value=0.0092  Score=44.56  Aligned_cols=89  Identities=11%  Similarity=0.140  Sum_probs=48.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhcCCEEE
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVIS  149 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV~  149 (294)
                      |.+-|+|+|.+|+.+++.| ++.+.  .+.+..+.... ...        ..+..-. .-...+.+-|    +.+|+.++
T Consensus         1 kHivI~G~g~~g~~l~~~L-~~~~i--~vi~~d~~~~~-~~~--------~~~~~~i-~Gd~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL-RGSEV--FVLAEDENVRK-KVL--------RSGANFV-HGDPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS-CGGGE--EEEESCTTHHH-HHH--------HTTCEEE-ESCTTSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-cCCCC--EEEEcchHHHH-HHH--------hcCcccc-ccccCCHHHHHHhhhhcCcEEE
Confidence            4588999999999999997 66654  44555443321 111        1111000 0011222222    47899999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEE
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILV  177 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailI  177 (294)
                      ++.+.  +...++-....+.+.|...+|
T Consensus        68 ~~~~~--d~~n~~~~~~~r~~~~~~~ii   93 (129)
T d2fy8a1          68 VNLES--DSETIHCILGIRKIDESVRII   93 (129)
T ss_dssp             ECCSS--HHHHHHHHHHHHHHCSSSCEE
T ss_pred             Eeccc--hhhhHHHHHHHHHHCCCceEE
Confidence            98874  334444444555666664333

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.011  Score=49.55  Aligned_cols=41  Identities=24%  Similarity=0.347  Sum_probs=35.2

Q ss_pred             CcccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           68 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        68 g~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      |..|.||++.|.|. +.||+++|+.|+ ..|++|+..|++.+.
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   42 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFV-NSGARVVICDKDESG   42 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            35689999999997 789999999984 789999999987543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.005  Score=48.49  Aligned_cols=99  Identities=20%  Similarity=0.168  Sum_probs=55.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  151 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  151 (294)
                      .+|+|+|+ |+||+.+++.+.+.-++++. ++++........   ..+. +  .+....+.....++++++..+|+|+=-
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~---d~~~-~--~~~~~~~~~~~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DAGE-L--AGAGKTGVTVQSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CTTC-S--SSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccc---hhhh-h--hccccCCceeeccHHHHhcccceEEEe
Confidence            36999995 99999999987555688875 456543321100   0000 0  011122233456788889999998765


Q ss_pred             cCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 022672          152 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  183 (294)
Q Consensus       152 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  183 (294)
                      .. .+.+...+.    ...+.+.-+|--.+|=
T Consensus        79 s~-p~~~~~~~~----~a~~~~~~~ViGTTG~  105 (162)
T d1diha1          79 TR-PEGTLNHLA----FCRQHGKGMVIGTTGF  105 (162)
T ss_dssp             SC-HHHHHHHHH----HHHHTTCEEEECCCCC
T ss_pred             cc-HHHHHHHHH----HHHhccceeEEecCCC
Confidence            54 122232221    1123455566556663

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.20  E-value=0.014  Score=45.73  Aligned_cols=91  Identities=18%  Similarity=0.156  Sum_probs=57.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHH--HhhcCCEE
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREADVI  148 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e--ll~~aDiV  148 (294)
                      .|++|.|.|. |.+|+...+. ++.+|++|++.++++... +.        +...+.... ....+..++  -...+|+|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiql-ak~~G~~vi~~~~~~~~~-~~--------~~~lGa~~~-i~~~~~~~~~~~~~g~D~v   95 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQV-ARAMGLRVLAAASRPEKL-AL--------PLALGAEEA-ATYAEVPERAKAWGGLDLV   95 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHH-HHHTTCEEEEEESSGGGS-HH--------HHHTTCSEE-EEGGGHHHHHHHTTSEEEE
T ss_pred             CCCEEEEEeccccchhhhhhh-hccccccccccccccccc-cc--------cccccccee-eehhhhhhhhhcccccccc
Confidence            5789999995 9999999987 589999999988765432 11        111121111 111111111  23568888


Q ss_pred             EEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          149 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       149 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      +-+..  + +   + .+.++.++++..+|.++
T Consensus        96 ~d~~G--~-~---~-~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          96 LEVRG--K-E---V-EESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             EECSC--T-T---H-HHHHTTEEEEEEEEEC-
T ss_pred             ccccc--h-h---H-HHHHHHHhcCCcEEEEe
Confidence            87654  2 1   2 56778889998888874

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.15  E-value=0.06  Score=42.14  Aligned_cols=38  Identities=18%  Similarity=0.172  Sum_probs=32.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~  109 (294)
                      -.|.+|.|+|.|.+|...++.+ +.+|+ +|++.|++..+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~a-k~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHH-HHcCCceeeccCChHHH
Confidence            4678999999999999999985 78886 79999987654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.013  Score=48.99  Aligned_cols=40  Identities=28%  Similarity=0.438  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           69 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        69 ~~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      ++|.||++.|.|.+ .||+++|+.|+ ..|++|+..|++.+.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la-~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFA-KLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            46999999999985 59999999984 789999999997654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.12  E-value=0.025  Score=45.45  Aligned_cols=37  Identities=38%  Similarity=0.334  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  109 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~  109 (294)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.|++...
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~a-k~~ga~~Vi~~d~~~~r   62 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASA-RLLGAAVVIVGDLNPAR   62 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHH-Hhhcccceeeecccchh
Confidence            578999999999998888874 67777 78899987654

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.019  Score=47.46  Aligned_cols=40  Identities=25%  Similarity=0.338  Sum_probs=34.3

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      ++|+||++-|.|. +.||+++|+.|+ ..|++|+..|++...
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLV-GQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCChHH
Confidence            3699999999988 669999999984 789999999887643

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.03  E-value=0.035  Score=40.26  Aligned_cols=63  Identities=11%  Similarity=0.131  Sum_probs=45.4

Q ss_pred             CCEEEEEcC----------ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 022672           73 GQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  142 (294)
Q Consensus        73 gktvGIIGl----------G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  142 (294)
                      .|+|||+|+          ..-.-.+.+.| +..|++|.+|||......                .........++++++
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L-~~~g~~v~iyDP~v~~~~----------------~~~~~~~~~~l~~~~   77 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDIL-KSKDIKIIIYEPMLNKLE----------------SEDQSVLVNDLENFK   77 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHH-HTSSCEEEEECTTCSCCC----------------TTCCSEECCCHHHHH
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHH-hccccceeeecCCcChhH----------------hccCCEEEeCHHHHH
Confidence            368999998          45567788887 688999999999865310                011123356899999


Q ss_pred             hcCCEEEEcc
Q 022672          143 READVISLHP  152 (294)
Q Consensus       143 ~~aDiV~l~~  152 (294)
                      ..||+|++..
T Consensus        78 ~~sDiII~~~   87 (108)
T d1dlja3          78 KQANIIVTNR   87 (108)
T ss_dssp             HHCSEEECSS
T ss_pred             hhCCEEEEcC
Confidence            9999876543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.03  E-value=0.051  Score=44.94  Aligned_cols=39  Identities=15%  Similarity=0.163  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      +|.||++.|.|. +.||+++|+.| ...|++|+..+++.+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKAL-HASGAKVVAVTRTNSD   41 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            489999999997 57999999998 4789999999987543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.91  E-value=0.025  Score=44.55  Aligned_cols=94  Identities=21%  Similarity=0.150  Sum_probs=61.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccc-cccCCHHHHh-----hc
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVL-----RE  144 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell-----~~  144 (294)
                      .|++|.|.|. |.+|+..++. ++..|++|++.+++.++. +.        +...+...... ......+.++     ..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiql-ak~~Ga~vi~~~~~~~~~-~~--------~~~~Ga~~vi~~~~~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQI-AKLKGCKVVGAAGSDEKI-AY--------LKQIGFDAAFNYKTVNSLEEALKKASPDG   98 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHH-HHHTTCEEEEEESSHHHH-HH--------HHHTTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEEeCCCchhHHHHHH-HHccCCEEEEeCCCHHHH-HH--------HHhhhhhhhcccccccHHHHHHHHhhcCC
Confidence            5889999998 6799998887 589999999998765432 11        11222221111 1122233333     45


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      .|+|+-++.  .++.    ++.++.|+++..++.++.
T Consensus        99 vd~v~D~vG--~~~~----~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2          99 YDCYFDNVG--GEFL----NTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             EEEEEESSC--HHHH----HHHGGGEEEEEEEEECCC
T ss_pred             CceeEEecC--chhh----hhhhhhccCCCeEEeecc
Confidence            899998885  2322    677899999999999864

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.054  Score=41.89  Aligned_cols=101  Identities=18%  Similarity=0.352  Sum_probs=61.7

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHhhcCC-CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 022672           71 LKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  146 (294)
Q Consensus        71 l~gktvGIIGl---G~IG~~vA~~L~~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  146 (294)
                      +.|.+|++||=   |++.+++...+ ..|| ..+++..|......+...+    .+...+   .......++++.++++|
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l-~~~~~~~~~~~~P~~~~~~~~~~~----~~~~~~---~~~~~~~d~~~a~~~aD   73 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILD----MLDEKG---IAWSLHSSIEEVMAEVD   73 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHHH----HHHHTT---CCEEECSCSTTTGGGCS
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHH-HHcCCCeEEeeccchhhhhHHHHH----HHhhhc---cccccccCHHHHhCcCc
Confidence            67999999997   66999999886 5786 5566665543221111111    111112   22234578899999999


Q ss_pred             EEEEccCCCcc----------ccccccHHHHhcCCCCcEEEEc
Q 022672          147 VISLHPVLDKT----------TYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       147 iV~l~~Plt~~----------t~~li~~~~l~~mk~gailIN~  179 (294)
                      +|...-.-...          ....++++.++.++++++|..+
T Consensus        74 vvy~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHc  116 (160)
T d1ekxa2          74 ILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  116 (160)
T ss_dssp             EEEECCCCGGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECC
T ss_pred             eEEeecccccccchHHHHHHHHHhhccHHHHHhcCcceeeecC
Confidence            99755322110          1133456677777888888776

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.77  E-value=0.02  Score=42.17  Aligned_cols=34  Identities=12%  Similarity=0.385  Sum_probs=30.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      -++|.|||.|.||-++|..| ..+|.+|..+++..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVI-KRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHH-Hhccccceeeehhc
Confidence            37899999999999999998 69999999998754

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.027  Score=43.94  Aligned_cols=37  Identities=14%  Similarity=0.041  Sum_probs=30.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|++|.|.|. |.+|..+.+. ++.+|++|++.+++..+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iql-ak~~Ga~Vi~~~~s~~k   65 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQW-AKALGAKLIGTVGTAQK   65 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHH-HHHHTCEEEEEESSHHH
T ss_pred             CCCEEEEEccccccchHHHHH-HHHhCCeEeecccchHH
Confidence            4789999955 5599998887 58999999999887654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.62  E-value=0.02  Score=42.36  Aligned_cols=33  Identities=15%  Similarity=0.322  Sum_probs=29.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      +++.|||.|.||-++|..| ..+|++|..+++..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l-~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVY-SRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHH-HhhCcceeEEEecc
Confidence            6899999999999999998 68999999988654

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.15  Score=40.15  Aligned_cols=107  Identities=16%  Similarity=0.142  Sum_probs=65.2

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           70 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        70 ~l~gktvGIIGlG--~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      .+.|.+|++||=|  ++..+++..+ ..||+++....|..-...+.............+   .......++++.++++|+
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~-~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv   77 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEAALVTECRALAQQNG---GNITLTEDVAKGVEGADF   77 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHH-HHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTT---CEEEEESCHHHHHTTCSE
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEEechHhhhhHHHHHHHHHHHHhcC---CceEEEechhhccccCCE
Confidence            4788999999965  7899999886 579999999887532111111110000011111   223345789999999999


Q ss_pred             EEEccCCC----cc----------ccccccHHHHhcCCCCcEEEEcC
Q 022672          148 ISLHPVLD----KT----------TYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       148 V~l~~Plt----~~----------t~~li~~~~l~~mk~gailIN~a  180 (294)
                      |..-.=..    .+          ....++.......+++++|..+.
T Consensus        78 vyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          78 IYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             EEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             EEEEehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            96643211    00          11233445556688899999874

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.045  Score=45.35  Aligned_cols=39  Identities=26%  Similarity=0.282  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++.|.|. +.||+++|+.|+ ..|++|+..|++...
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   43 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALH-ATGARVVAVSRTQAD   43 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHH
Confidence            589999999988 679999999984 789999999987543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.43  E-value=0.031  Score=46.74  Aligned_cols=39  Identities=26%  Similarity=0.352  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      +|.||++.|.|. +.||+++|+.|+ ..|++|+..|++.+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAV-AAGARVVLADVLDEE   41 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            589999999998 579999999984 789999999987654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.043  Score=45.43  Aligned_cols=39  Identities=23%  Similarity=0.202  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++-|-|. +.||+++|+.|+ ..|++|+..+++.+.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~-~~G~~Vv~~~r~~~~   40 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLA-ARGAKVIGTATSENG   40 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            378999999986 679999999984 789999999987643

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.41  E-value=0.023  Score=41.46  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=30.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      +++.|||.|.||-.+|..| ..+|.+|..+.+...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l-~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAY-ANFGTKVTILEGAGE   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CeEEEECCCccceeeeeee-cccccEEEEEEecce
Confidence            7899999999999999997 689999999876543

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.41  E-value=0.015  Score=44.96  Aligned_cols=92  Identities=20%  Similarity=0.265  Sum_probs=52.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhc-C-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEG-F-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~-~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      |-+|||||. |-+|+++.+.|.+. | -.++.....+....         ..+.. .  ..........++.+.+.|+++
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G---------~~~~~-~--~~~~~~~~~~~~~~~~~d~~f   68 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAG---------KSLKF-K--DQDITIEETTETAFEGVDIAL   68 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTT---------CEEEE-T--TEEEEEEECCTTTTTTCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccc---------ccccc-c--CCcccccccchhhhhhhhhhh
Confidence            447999999 99999999988432 2 34555554322110         00000 0  000111233445678899999


Q ss_pred             EccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          150 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       150 l~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      +++|. ..+.    +......+.|..+|+.|-
T Consensus        69 ~~~~~-~~s~----~~~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          69 FSAGS-STSA----KYAPYAVKAGVVVVDNTS   95 (154)
T ss_dssp             ECSCH-HHHH----HHHHHHHHTTCEEEECSS
T ss_pred             hccCc-cchh----hHHhhhccccceehhcCh
Confidence            99983 2222    222234467999999863

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=94.32  E-value=0.031  Score=46.71  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcC-C--hHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           70 LLKGQTVGVIGA-G--RIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        70 ~l~gktvGIIGl-G--~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      .|+||++.|.|. |  .||.++|+.| ...|++|+..+++.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~l-a~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSC-FNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHH-HTTTCEEEEEESST
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHH-HHCCCEEEEEeCCH
Confidence            389999999997 4  5999999998 48999999998764

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.30  E-value=0.028  Score=44.56  Aligned_cols=94  Identities=20%  Similarity=0.175  Sum_probs=60.7

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhhcCCCE-EEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc-----
Q 022672           72 KGQTVGVIG-AGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-----  144 (294)
Q Consensus        72 ~gktvGIIG-lG~IG~~vA~~L~~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-----  144 (294)
                      .+++|.|.| .|.+|+...+. ++.+|++ |++.+.+.+..... ..       ..+...+......++.+.+++     
T Consensus        30 ~~etVLI~gaaGgVG~~aiQl-ak~~Ga~~vi~~~~~~e~~~~l-~~-------~~gad~vi~~~~~~~~~~~~~~~~~G  100 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQI-GHLLGCSRVVGICGTQEKCLFL-TS-------ELGFDAAVNYKTGNVAEQLREACPGG  100 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHH-HHHTTCSEEEEEESSHHHHHHH-HH-------HSCCSEEEETTSSCHHHHHHHHCTTC
T ss_pred             CCCEEEEECCCchhhHHHHHH-HHHcCCcceecccchHHHHhhh-hh-------cccceEEeeccchhHHHHHHHHhccC
Confidence            357899999 59999999997 5889985 55556554332211 11       112222222234566666655     


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      .|+|+-++-  .++    -...++.++++..++.++
T Consensus       101 vDvv~D~vG--g~~----~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2         101 VDVYFDNVG--GDI----SNTVISQMNENSHIILCG  130 (187)
T ss_dssp             EEEEEESSC--HHH----HHHHHTTEEEEEEEEEC-
T ss_pred             ceEEEecCC--chh----HHHHhhhccccccEEEec
Confidence            999998885  221    267789999999999885

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.28  E-value=0.16  Score=39.33  Aligned_cols=38  Identities=21%  Similarity=0.292  Sum_probs=31.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCC-CEEEEEcCCchh
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g-~~V~~~d~~~~~  109 (294)
                      -.|.+|.|+|.|.+|...+..+ +.+| .+|++.|++..+
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~-~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDINKDK   65 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCCcHHHHHHHH-HHcCCceEEeecCcHHH
Confidence            3678999999999999999986 6777 589999987654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.021  Score=51.70  Aligned_cols=99  Identities=19%  Similarity=0.199  Sum_probs=58.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh--HHHH-H-----------HhhhhhhhhhcCCCCcccc-
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--RLEK-F-----------VTAYGQFLKANGEQPVTWK-  133 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~--~~~~-~-----------~~~~~~~~~~~~~~~~~~~-  133 (294)
                      .|++++|.|||+|.+|..+++.|+ ..|+ ++..+|...-.  -+.+ +           .+...+.+.... ..+... 
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L~-~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~n-p~v~i~~  111 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNLA-LSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV-PNCNVVP  111 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHHH-TTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHS-TTCCCEE
T ss_pred             HHhcCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhC-CCCceEe
Confidence            378899999999999999999985 5666 67788864211  0000 0           000011111111 011000 


Q ss_pred             ----ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCC
Q 022672          134 ----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  171 (294)
Q Consensus       134 ----~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk  171 (294)
                          ..+.-+++++++|+|+.++- +.+++..+++..+...+
T Consensus       112 ~~~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         112 HFNKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             ECSCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             eeccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence                11223578899999999886 56788888887765444

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.27  E-value=0.025  Score=46.13  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=30.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      ||+|.|||.|.-|-..|..| +..|++|++++.+.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~L-a~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKL-KIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHH-HhCCCCEEEEeCCC
Confidence            69999999999999999998 57899999998653

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.26  E-value=0.043  Score=45.58  Aligned_cols=39  Identities=23%  Similarity=0.371  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++-|-|. +.||+++|+.|+ ..|++|+..|++.+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   42 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMV-AEGAKVVFGDILDEE   42 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999988 679999999984 789999999987643

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.028  Score=41.07  Aligned_cols=33  Identities=24%  Similarity=0.612  Sum_probs=30.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      +++.|||.|.+|-++|..| ..+|.+|..+++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l-~~~G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVI-NGLGAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHh-hccccEEEEEeecc
Confidence            6899999999999999997 68999999998765

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.19  E-value=0.098  Score=43.37  Aligned_cols=39  Identities=15%  Similarity=0.145  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      +|.||++.|.|. +.||+++|+.|+ ..|++|+..|++.+.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   41 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLA-EAGCSVVVASRNLEE   41 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            589999999998 569999999984 789999999987654

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.14  E-value=0.093  Score=41.19  Aligned_cols=110  Identities=12%  Similarity=0.134  Sum_probs=58.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCc--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .+|+|||. |-.|+++.|.|...=.+++.....+.  ...-..... .....  .+..........+.+....++|++++
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~dvvf~   78 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISD-LHPQL--KGIVDLPLQPMSDVRDFSADVDVVFL   78 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHH-HCGGG--TTTCCCBEEEESCGGGTCTTCCEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccc-ccccc--ccccccccccchhhhhhhcccceeec
Confidence            47999995 99999999998432367765442211  100000000 00000  01111112223445556788999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV  191 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~  191 (294)
                      ++|.. ...    +..-...+.+..+|+.|-.--.+....+
T Consensus        79 alp~~-~s~----~~~~~~~~~~~~vIDlSadfRl~~~~~~  114 (179)
T d2g17a1          79 ATAHE-VSH----DLAPQFLQAGCVVFDLSGAFRVNDRAFY  114 (179)
T ss_dssp             CSCHH-HHH----HHHHHHHHTTCEEEECSSTTSSSCHHHH
T ss_pred             cccch-hHH----HHhhhhhhcCceeecccccccccccccc
Confidence            99932 111    1122334678899999865555444443

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.075  Score=44.42  Aligned_cols=40  Identities=25%  Similarity=0.333  Sum_probs=34.6

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      ..|.||++.|.|. +.||+++|+.|+ ..|++|+..+++.+.
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la-~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLA-KMGAHVVVTARSKET   50 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            3599999999998 569999999985 789999999987654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.09  E-value=0.028  Score=46.69  Aligned_cols=42  Identities=21%  Similarity=0.267  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcC-Ch--HHHHHHHHHhhcCCCEEEEEcCCchhHHH
Q 022672           70 LLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQATRLE  112 (294)
Q Consensus        70 ~l~gktvGIIGl-G~--IG~~vA~~L~~~~g~~V~~~d~~~~~~~~  112 (294)
                      .|.||++.|.|. |.  ||+++|+.| ..-|++|+..++...+..+
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~l-a~~Ga~Vil~~~~~~~~~~   47 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVA-QEQGAQLVLTGFDRLRLIQ   47 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHH-HHTTCEEEEEECSCHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHH-HHcCCEEEEEeCChHHHHH
Confidence            489999999996 54  999999998 4889999998876654333

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.99  E-value=0.035  Score=46.13  Aligned_cols=39  Identities=18%  Similarity=0.109  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEcCC---hHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           69 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        69 ~~l~gktvGIIGlG---~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .+|.||++.|.|.+   .||+++|++|+ .-|++|+..++...
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la-~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLK-EAGAEVALSYQAER   45 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEeCcHH
Confidence            36999999999984   59999999985 77999988887643

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.93  E-value=0.074  Score=43.58  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=32.7

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      |+||++.|.|. +.||+++|+.| ...|++|+..|++.+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l-~~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVL-SQEGAEVTICARNEE   39 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHH
Confidence            78999999997 67999999998 478999999998754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.93  E-value=0.045  Score=39.91  Aligned_cols=36  Identities=17%  Similarity=0.223  Sum_probs=31.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      ..+++|.|||-|.||-.+|..| ..+|.+|..+.+.+
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l-~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFF-NATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HhcchhheEeeccc
Confidence            4579999999999999999997 58999999988754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.036  Score=41.04  Aligned_cols=33  Identities=15%  Similarity=0.153  Sum_probs=30.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      |++.|||.|.||-.+|..| ..+|.+|..+.+..
T Consensus        23 k~vvIvGgG~iG~E~A~~l-~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGIL-SALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHH-hcCCcEEEEEeecc
Confidence            7899999999999999997 68999999998764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.85  E-value=0.057  Score=45.48  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++.|-|. +.||+++|+.|+ .-|++|+..|++.+.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   41 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFV-AEGAKVAVLDKSAER   41 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999987 789999999985 789999999987643

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=93.83  E-value=0.059  Score=41.46  Aligned_cols=62  Identities=24%  Similarity=0.348  Sum_probs=45.3

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 022672           72 KGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  148 (294)
Q Consensus        72 ~gktvGIIGl---G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  148 (294)
                      .|.+|++||=   +++.++++..+ ..||+++....|..-...                 ........++++.++++|+|
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~-~~~g~~~~i~~P~~~~~~-----------------~~~~~~~~~~~ea~~~aDvi   63 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVL-TRLGARVLFSGPSEWQDE-----------------ENTFGTYVSMDEAVESSDVV   63 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH-HHcCCcccccCCchhhcc-----------------ccceeEEEechhccccCcee
Confidence            4889999997   68999999987 689999988776431100                 01123446899999999998


Q ss_pred             EEc
Q 022672          149 SLH  151 (294)
Q Consensus       149 ~l~  151 (294)
                      ...
T Consensus        64 y~~   66 (151)
T d2at2a2          64 MLL   66 (151)
T ss_pred             eee
Confidence            654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.81  E-value=0.094  Score=43.21  Aligned_cols=39  Identities=26%  Similarity=0.299  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++.|.|. +.||+++|+.| ...|++|+..|++...
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l-~~~G~~V~~~~r~~~~   41 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELF-AKEGARLVACDIEEGP   41 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            488999999997 67999999998 4789999999987643

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.79  E-value=0.037  Score=40.66  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=29.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      +++.|||-|.||-.+|..| ..+|++|....+..
T Consensus        23 ~~i~IiG~G~ig~E~A~~l-~~~G~~Vtiv~~~~   55 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVW-ARLGAEVTVLEAMD   55 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             CeEEEECCChHHHHHHHHH-HHcCCceEEEEeec
Confidence            7899999999999999998 68999998887554

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.76  E-value=0.022  Score=44.63  Aligned_cols=36  Identities=11%  Similarity=0.307  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCch
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA  108 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~  108 (294)
                      .+|+|.|||.|..|-..|..| ...|+ +|..+++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l-~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFL-ARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHH-HHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHH-HHCCCCeEEEEEecCc
Confidence            578999999999999999998 57888 4888887653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.73  E-value=0.11  Score=43.26  Aligned_cols=40  Identities=23%  Similarity=0.196  Sum_probs=34.3

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .++.||++.|.|. +.||+++|+.|+ ..|++|+..+++...
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVA-AAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHH-HTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            3689999999988 469999999984 789999999987654

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=93.67  E-value=0.095  Score=42.97  Aligned_cols=72  Identities=10%  Similarity=0.124  Sum_probs=42.9

Q ss_pred             CCCEEEEEcCChHH----HHHHHHHhh-cCCCEEE-EEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--
Q 022672           72 KGQTVGVIGAGRIG----SAYARMMVE-GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  143 (294)
Q Consensus        72 ~gktvGIIGlG~IG----~~vA~~L~~-~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  143 (294)
                      +-.+|||||+|.+|    +.-...+.+ .-+++++ ++|++.... +.+.+.+       +...  ...+.++++++.  
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~-~~~~~~~-------~~~~--~~~~~~~~~l~~~~   84 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSS-LQTIEQL-------QLKH--ATGFDSLESFAQYK   84 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHH-HHHHHHT-------TCTT--CEEESCHHHHHHCT
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHH-HHHHHhc-------cccc--ceeecchhhccccc
Confidence            34579999999854    433333422 2367877 478876442 2222221       1111  223578999985  


Q ss_pred             cCCEEEEccC
Q 022672          144 EADVISLHPV  153 (294)
Q Consensus       144 ~aDiV~l~~P  153 (294)
                      +-|+|++|+|
T Consensus        85 ~iD~V~i~tp   94 (237)
T d2nvwa1          85 DIDMIVVSVK   94 (237)
T ss_dssp             TCSEEEECSC
T ss_pred             ccceeeccCC
Confidence            4678999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.55  E-value=0.046  Score=40.29  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=31.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      ++++.|||.|.+|-++|..| ...|.+|..+++...
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l-~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATA-RTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CCeEEEECcchhHHHHHHHh-hcccceEEEEeeccc
Confidence            58999999999999999998 588999999987653

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=93.55  E-value=0.047  Score=43.24  Aligned_cols=97  Identities=13%  Similarity=0.104  Sum_probs=56.6

Q ss_pred             CCCEEEEE--cCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccc---cccCC----HHHHh
Q 022672           72 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW---KRASS----MDEVL  142 (294)
Q Consensus        72 ~gktvGII--GlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----l~ell  142 (294)
                      .|+++.|+  |.|.+|+...+. ++.+|++|++.-++.....+...     .+...+......   ....+    +.++.
T Consensus        28 ~g~~vli~~ga~g~vG~~aiql-Ak~~Ga~vI~~v~~~~~~~~~~~-----~~~~lGad~vi~~~~~~~~~~~~~v~~~~  101 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQI-GKLLNFNSISVIRDRPNLDEVVA-----SLKELGATQVITEDQNNSREFGPTIKEWI  101 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHH-HHHHTCEEEEEECCCTTHHHHHH-----HHHHHTCSEEEEHHHHHCGGGHHHHHHHH
T ss_pred             CCCEEEEEeCCCchHHHHHHHH-HhhcCCeEEEEEecccccchHHh-----hhhhccccEEEeccccchhHHHHHHHHHH
Confidence            47789998  679999999887 58999999987654433221110     011112111100   00111    22222


Q ss_pred             ----hcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          143 ----READVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       143 ----~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                          ...|+++-++.  .++    ....+..|+++..+|.++
T Consensus       102 ~~~g~~vdvv~D~vg--~~~----~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         102 KQSGGEAKLALNCVG--GKS----STGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHHTCCEEEEEESSC--HHH----HHHHHHTSCTTCEEEECC
T ss_pred             hhccCCceEEEECCC--cch----hhhhhhhhcCCcEEEEEC
Confidence                24788888774  221    156778899999999885

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.54  E-value=0.091  Score=43.74  Aligned_cols=38  Identities=18%  Similarity=0.207  Sum_probs=33.1

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      |.||++-|.|. +.||+++|+.|+ .-|++|+..|++.+.
T Consensus         2 l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   40 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLA-AEGAKLSLVDVSSEG   40 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            78999999988 579999999984 789999999987654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.44  E-value=0.05  Score=40.12  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      .+|+|.|||.|.+|-.+|..| ...|.+|..+++..
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l-~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAF-AKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             CCCEEEEECChHHHHHHHHHh-hccceEEEEEEecC
Confidence            468999999999999999997 58999999987654

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.40  E-value=0.03  Score=42.80  Aligned_cols=91  Identities=14%  Similarity=0.154  Sum_probs=49.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhh-cC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVE-GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~-~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .+|||||. |-+|+.+.+.|.+ .+ ..++.....+....         ..+.. ......  ....-++.+.++|++++
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~G---------k~i~~-~~~~~~--~~~~~~~~~~~~d~vf~   70 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG---------QRMGF-AESSLR--VGDVDSFDFSSVGLAFF   70 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT---------CEEEE-TTEEEE--CEEGGGCCGGGCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCC---------cceee-ccccch--hccchhhhhccceEEEe
Confidence            46999998 9999999998842 33 34665543322110         00100 000111  11112244688999999


Q ss_pred             ccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 022672          151 HPVLDKTTYHLINKERLATMKKEAILVNCSR  181 (294)
Q Consensus       151 ~~Plt~~t~~li~~~~l~~mk~gailIN~aR  181 (294)
                      ++|. ..+..+. .   ...+.|..+||.|.
T Consensus        71 a~p~-~~s~~~~-~---~~~~~g~~VID~Ss   96 (144)
T d2hjsa1          71 AAAA-EVSRAHA-E---RARAAGCSVIDLSG   96 (144)
T ss_dssp             CSCH-HHHHHHH-H---HHHHTTCEEEETTC
T ss_pred             cCCc-chhhhhc-c---ccccCCceEEeech
Confidence            9983 2222221 2   22367889998753

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=0.12  Score=42.65  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=33.1

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      |.||++.|.|. +.||+++|+.|+ ..|++|+..|++...
T Consensus         4 l~gK~alITGas~GIG~aia~~la-~~G~~Vi~~~r~~~~   42 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFA-REGAKVIATDINESK   42 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            89999999877 789999999984 789999999987643

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=93.40  E-value=0.042  Score=45.40  Aligned_cols=39  Identities=28%  Similarity=0.288  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++.|.|. +.||+++|+.| ...|++|+..+++.+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l-~~~G~~V~~~~r~~~~   41 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLF-AREGASLVAVDREERL   41 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            389999999988 45999999998 4889999999987653

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=93.38  E-value=0.058  Score=44.69  Aligned_cols=40  Identities=25%  Similarity=0.239  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhH
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  110 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~  110 (294)
                      .|.||++.|.|. +.||+++|+.| ...|++|+..|++....
T Consensus         2 rL~gKvalVTGas~GIG~aia~~l-a~~Ga~V~~~~~~~~~~   42 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERF-AVEGADIAIADLVPAPE   42 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCchHH
Confidence            489999999988 57999999998 47899999999876543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.38  E-value=0.14  Score=39.39  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=30.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchh
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  109 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~  109 (294)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.|++...
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~a-k~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEecchhHHHHHHHHH-HHHhcCceEEEcccHHH
Confidence            578999999999999999875 78885 67777776544

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.29  E-value=0.041  Score=41.94  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=29.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQ  107 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~  107 (294)
                      .||+|.|||.|.+|-++|..|++ ....+|+.+++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            48999999999999999999843 2347899888765

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.16  Score=43.09  Aligned_cols=39  Identities=26%  Similarity=0.334  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++.|.|. +.||+++|+.|+ ..|++|+..+++.+.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la-~~Ga~Vvi~~r~~~~   48 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELL-ELGSNVVIASRKLER   48 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            599999999987 679999999984 789999999987654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.28  E-value=0.032  Score=41.27  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=28.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      +++.|||.|.||-++|..| ..+|.+|..+.+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l-~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFL-AGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHH-HHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHH-hhcCCeEEEEEec
Confidence            5799999999999999997 6899999887653

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.26  E-value=0.049  Score=40.54  Aligned_cols=66  Identities=17%  Similarity=0.164  Sum_probs=39.9

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEEEEcc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISLHP  152 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV~l~~  152 (294)
                      +|.|+|+|.+|+++++.+...-+++++++ |..+...-        .     ...+..+...+.++++.+ ..++.++++
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G--------~-----~I~Gi~V~~~~~l~~~~~~~i~iai~~i   71 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVG--------R-----PVRGGVIEHVDLLPQRVPGRIEIALLTV   71 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTT--------C-----EETTEEEEEGGGHHHHSTTTCCEEEECS
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcC--------C-----EECCEEEecHHHHHHHHhhcccEEEEeC
Confidence            69999999999999987634557888764 54443210        0     001122233345666553 456667777


Q ss_pred             C
Q 022672          153 V  153 (294)
Q Consensus       153 P  153 (294)
                      |
T Consensus        72 ~   72 (126)
T d2dt5a2          72 P   72 (126)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.084  Score=43.92  Aligned_cols=38  Identities=26%  Similarity=0.288  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .|+||++.|.|. +.||+++|+.|+ ..|++|++++++..
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la-~~G~~Vv~~~r~~~   45 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALV-QQGLKVVGCARTVG   45 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            499999999988 689999999985 78999999998754

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.24  E-value=0.072  Score=46.17  Aligned_cols=33  Identities=15%  Similarity=0.092  Sum_probs=27.2

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      |.+.|.| .|-||+.+++.| ...|.+|++.|+..
T Consensus         2 K~vLITGatGfiGs~lv~~L-l~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFL-LEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCcCEEEEEECCC
Confidence            5677888 699999999998 57799999999864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.20  E-value=0.033  Score=41.17  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=30.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      +++.|||.|.||-++|..+ ..+|++|....+...
T Consensus        26 ~~~viiG~G~iglE~A~~~-~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVW-GRIGSEVTVVEFASE   59 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHH-HHHTCEEEEECSSSS
T ss_pred             CeEEEEccchHHHHHHHHH-HhcCCeEEEEEEccc
Confidence            7899999999999999998 699999999876543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.16  E-value=0.061  Score=44.87  Aligned_cols=39  Identities=21%  Similarity=0.187  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      +|.||++.|.|. +.||+++|+.|+ .-|++|+..|++.+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   44 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELA-SLGASVYTCSRNQKE   44 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            689999999998 569999999985 789999999987543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.07  E-value=0.045  Score=45.74  Aligned_cols=39  Identities=26%  Similarity=0.318  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++.|.|. +.||+++|+.|+ ..|++|+..|++.+.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLA-EEGTAIALLDMNREA   41 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            589999999998 669999999984 789999999987543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.02  E-value=0.073  Score=44.27  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++-|.|. +.||+++|+.| ...|++|+..|++.+.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAY-VREGARVAIADINLEA   41 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHH-HHTTEEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            488999999988 78999999998 4789999999987643

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=92.96  E-value=0.16  Score=41.96  Aligned_cols=39  Identities=21%  Similarity=0.154  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++.|.|. +.||+++|+.|+ ..|++|+..+++.+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   42 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFV-EEGAKVMITGRHSDV   42 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999986 779999999984 789999999987543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.92  E-value=0.2  Score=41.71  Aligned_cols=39  Identities=21%  Similarity=0.418  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++.|.|. +.||+++|+.|+ ..|++|+..|++...
T Consensus         3 rL~gKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   42 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFV-RYGAKVVIADIADDH   42 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999987 679999999984 789999999987543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.86  E-value=0.05  Score=40.41  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=30.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      .+++.|||.|.||-++|..+ ..+|.+|....+..
T Consensus        26 p~~vvIiGgG~IG~E~A~~~-~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVY-STLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHh-hcCCCEEEEEEeec
Confidence            37899999999999999997 68999999997654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.79  E-value=0.043  Score=45.75  Aligned_cols=40  Identities=18%  Similarity=0.103  Sum_probs=32.1

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           69 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        69 ~~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      +.|.||++.|.|. +.||+++|+.| ...|++|+..+++...
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~l-a~~G~~Vvi~~~~~~~   42 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIEL-GRRGASVVVNYGSSSK   42 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEcCCChH
Confidence            4699999999987 66999999998 4889999875544433

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.71  E-value=0.052  Score=45.39  Aligned_cols=39  Identities=28%  Similarity=0.275  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++.|.|. +.||+++|+.|+ ..|++|+..+++...
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~   44 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFA-GFGAVIHTCARNEYE   44 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            689999999988 569999999984 789999999987644

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=92.66  E-value=0.082  Score=41.80  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      .....|+|.|||-|..|-+.|..| ...|++|+.|+...
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~l-a~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINA-AARGHQVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHH-HTTTCEEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHH-HhhccceEEEeccC
Confidence            456789999999999999999997 58899999999764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.60  E-value=0.075  Score=44.09  Aligned_cols=39  Identities=23%  Similarity=0.204  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++.|.|. +.||+++|+.| ...|++|+.++++.+.
T Consensus         7 ~lenKvalITGas~GIG~a~a~~l-a~~Ga~V~~~~r~~~~   46 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKML-AKSVSHVICISRTQKS   46 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHH-TTTSSEEEEEESSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            588999999988 68999999998 4889999999987643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.031  Score=46.30  Aligned_cols=36  Identities=28%  Similarity=0.436  Sum_probs=31.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCC
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  106 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~  106 (294)
                      .|++++|.|||+|.+|..+|+.|+ ..|. ++..+|..
T Consensus        27 kL~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          27 ALKDSRVLIVGLGGLGCAASQYLA-SAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCC
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEECCc
Confidence            599999999999999999999985 6777 68888854

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.57  E-value=0.064  Score=42.46  Aligned_cols=69  Identities=14%  Similarity=0.072  Sum_probs=42.4

Q ss_pred             CEEEEEc-CChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhcCCEE
Q 022672           74 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVI  148 (294)
Q Consensus        74 ktvGIIG-lG~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV  148 (294)
                      +||.|.| .|.||+.+++.|. .-|  +.|+...+++......         . ....-  .......++.++++.+|.|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll-~~g~~v~v~~~~R~~~~~~~~---------~-~~~~~~~~d~~~~~~~~~~~~~~d~v   72 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGKEKI---------G-GEADVFIGDITDADSINPAFQGIDAL   72 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHH-HTTTTCEEEEEESCHHHHHHT---------T-CCTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CEEEEECCccHHHHHHHHHHH-HCCCcEEEEEEcCCHHHHHhc---------c-CCcEEEEeeeccccccccccccceee
Confidence            6899999 5999999999984 445  5676666665432110         0 00000  0111223566778999999


Q ss_pred             EEccC
Q 022672          149 SLHPV  153 (294)
Q Consensus       149 ~l~~P  153 (294)
                      +.+..
T Consensus        73 i~~a~   77 (252)
T d2q46a1          73 VILTS   77 (252)
T ss_dssp             EECCC
T ss_pred             EEEEe
Confidence            87764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.54  E-value=0.077  Score=44.08  Aligned_cols=39  Identities=21%  Similarity=0.427  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++.|.|. +.||+++|+.|+ .-|++|+..|++...
T Consensus         3 rL~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~~~~~~   42 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLL-GEGAKVAFSDINEAA   42 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECSCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999986 579999999984 789999999987643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=92.53  E-value=0.68  Score=35.25  Aligned_cols=39  Identities=26%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      -.|.+|.|+|.|.+|...+..+++..+.+|++.|++..+
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            467899999999999999988643445589999987654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.40  E-value=0.06  Score=44.87  Aligned_cols=39  Identities=21%  Similarity=0.270  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++-|.|. +.||+++|+.|+ ..|++|+..+++.+.
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   47 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFA-TAGASVVVSDINADA   47 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHH-TTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            589999999988 679999999984 789999999987543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.32  E-value=0.08  Score=38.81  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=30.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      ++++.|||.|.+|-++|..| ..+|.+|..+++.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNL-AEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHh-hcccceEEEEeccc
Confidence            47899999999999999998 68999999998754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.28  E-value=0.067  Score=38.77  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      +++.|||-|.+|-++|..| ..+|.+|..+++..
T Consensus        22 ~~vvIiGgG~~G~E~A~~l-~~~g~~Vtlve~~~   54 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAY-RKLGAQVSVVEARE   54 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHH-hhcccceEEEeeec
Confidence            7899999999999999997 68999999987754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=92.27  E-value=0.1  Score=42.86  Aligned_cols=38  Identities=21%  Similarity=0.248  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIGlG---~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .|.||++.|.|.+   .||+++|+.| ...|++|+..+++..
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l-~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHH-HHTTCEEEEEESSTT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence            3899999999975   4999999998 488999998887643

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.19  E-value=0.096  Score=39.06  Aligned_cols=36  Identities=25%  Similarity=0.258  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .++++.|||-|.+|-++|..| ...|.+|..+++...
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l-~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATA-IKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHH-HhhCcceeeeeeccc
Confidence            368999999999999999997 588999999987653

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.98  E-value=0.13  Score=42.21  Aligned_cols=35  Identities=20%  Similarity=0.169  Sum_probs=29.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      -|+|.|+|. |.||+.+++.| ...|.+|++.++...
T Consensus         3 kkKILVtGatG~iG~~l~~~L-~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKAS-LDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HHCCCeEEEEECCCc
Confidence            368999996 99999999998 467999999987654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=0.071  Score=44.63  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=32.4

Q ss_pred             CCCEEEEE--cCChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           72 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        72 ~gktvGII--GlG~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      +||+|.||  |-+.||+++|+.|++..|.+|+.++++.+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            48999988  778999999999865569999999988654

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=91.94  E-value=0.19  Score=41.65  Aligned_cols=37  Identities=19%  Similarity=0.033  Sum_probs=30.3

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           70 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        70 ~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      +|.||++-|.|.+ .||+++|+.|+ ..|++|+..+++.
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la-~~G~~vii~~r~~   39 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELV-KRNLKNFVILDRV   39 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTCCSEEEEEESS
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHH-HCCCEEEEEECCc
Confidence            5899999999985 79999999984 7899877665443

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.91  E-value=0.086  Score=43.29  Aligned_cols=33  Identities=21%  Similarity=0.450  Sum_probs=29.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      ++|.|.|. |-||+.+++.| ...|.+|++.|++.
T Consensus         2 MKIlItGasGfiG~~l~~~L-~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQL-KGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHH-TTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEeechh
Confidence            46999997 99999999998 68899999998754

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.65  E-value=0.28  Score=37.34  Aligned_cols=75  Identities=19%  Similarity=0.198  Sum_probs=45.3

Q ss_pred             EEEEEcC-ChHHHHHHHHHhhc--CC----CEEEEEcCCchhHH-HHHHhhhhhhhhhcC-CCCccccccCCHHHHhhcC
Q 022672           75 TVGVIGA-GRIGSAYARMMVEG--FK----MNLIYYDLYQATRL-EKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        75 tvGIIGl-G~IG~~vA~~L~~~--~g----~~V~~~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~a  145 (294)
                      +|.|||. |.+|+.+|-.|+.+  |+    ..+..+|....... +....    .+.... ..........+.++.+++|
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLM----ELQDCALPLLKDVIATDKEEIAFKDL   80 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHH----HHHHTCCTTEEEEEEESCHHHHTTTC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhh----hhcccccccccccccCcccccccCCc
Confidence            7999995 99999999877421  23    25777886554321 11111    011111 1111233446788999999


Q ss_pred             CEEEEccC
Q 022672          146 DVISLHPV  153 (294)
Q Consensus       146 DiV~l~~P  153 (294)
                      |+|+++..
T Consensus        81 dvVVitag   88 (154)
T d5mdha1          81 DVAILVGS   88 (154)
T ss_dssp             SEEEECCS
T ss_pred             eEEEEecc
Confidence            99998874

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.44  E-value=0.31  Score=37.10  Aligned_cols=111  Identities=22%  Similarity=0.223  Sum_probs=57.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhc--CCC----EEEEEcCCchhH-HHHHHhhhhhhhhhcC-CCCccccccCCHHHHhhc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEG--FKM----NLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE  144 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~--~g~----~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~  144 (294)
                      .+|.|+|. |.+|+.+|-.|+.+  ++.    ....++...... .+....    .+.... ..........+..+.+++
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVM----ELEDCAFPLLAGLEATDDPKVAFKD   80 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHH----HHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchh----hhhccccccccccccCCchhhhccc
Confidence            37999996 99999999887532  231    223333322211 111110    011111 111122334678889999


Q ss_pred             CCEEEEccCCCcc---cc-ccc--cH--------HHHhcCCCCcEEEEcCCCcccCHHHH
Q 022672          145 ADVISLHPVLDKT---TY-HLI--NK--------ERLATMKKEAILVNCSRGPVIDEVAL  190 (294)
Q Consensus       145 aDiV~l~~Plt~~---t~-~li--~~--------~~l~~mk~gailIN~aRG~~vd~~aL  190 (294)
                      ||+|+++.-....   ++ .++  |.        ..-+..+++++++.++.  .+|.-..
T Consensus        81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~  138 (154)
T d1y7ta1          81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNAL  138 (154)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred             ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHH
Confidence            9999998742211   21 111  11        12233466888887754  5665543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.42  E-value=0.1  Score=43.68  Aligned_cols=39  Identities=18%  Similarity=0.157  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|+||++.|.|. +.||+++|+.|+ ..|++|+..+++.+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la-~~Ga~V~l~~r~~~~   41 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFA-QEGANVTITGRSSER   41 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999987 679999999984 789999999987653

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.29  E-value=0.081  Score=44.41  Aligned_cols=38  Identities=16%  Similarity=0.148  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEcCC---hHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           69 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        69 ~~l~gktvGIIGlG---~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      ..|.||++.|.|.+   .||+++|+.|+ ..|++|+..++..
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la-~~Ga~Vvi~~~~~   44 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLA-AAGAEILVGTWVP   44 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHH-HTTCEEEEEEEHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEeCch
Confidence            46999999999986   59999999984 7899999887654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.18  E-value=0.15  Score=42.34  Aligned_cols=41  Identities=24%  Similarity=0.378  Sum_probs=33.7

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHH
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLE  112 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~  112 (294)
                      |.||++.|.|. +.||+++|+.|+ .-|++|+..+++.....+
T Consensus         2 L~gK~alITGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~~~~   43 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALA-AQGADIVLNGFGDAAEIE   43 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEECCSCHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCcHHHHH
Confidence            78999999987 569999999984 789999999987544333

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=91.17  E-value=0.12  Score=41.79  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      ..++|.|||.|..|-.+|..|+ ..|.+|+++++..
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~-~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLR-DAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHH-HCCCCEEEEeCCC
Confidence            3568999999999999999984 6799999999754

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=91.16  E-value=0.12  Score=41.45  Aligned_cols=35  Identities=20%  Similarity=0.188  Sum_probs=30.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      ..|+|.|||.|..|-+.|..| ...|.+|.++++..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L-~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALIL-ARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHH-HHCCCCEEEEeCCC
Confidence            346899999999999999998 57899999999753

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=91.13  E-value=0.11  Score=40.65  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=26.2

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      +|||=|||+|||.+.|.+...-.++|.+.+..
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~   34 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCC
Confidence            69999999999999998654557888877643

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=91.11  E-value=0.48  Score=40.39  Aligned_cols=102  Identities=17%  Similarity=0.304  Sum_probs=62.3

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhhcC-CCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 022672           70 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  145 (294)
Q Consensus        70 ~l~gktvGIIGl---G~IG~~vA~~L~~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  145 (294)
                      .+.|++|.++|-   +++..+.+..+ ..| |+++..+.|..-...+.+.+.    ...   ....+....++++.++++
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~-~~~~~~~~~i~~P~~~~~~~~~~~~----~~~---~~~~~~~~~d~~~a~~~a  222 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILDM----LDE---KGIAWSLHSSIEEVMAEV  222 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHHHH----HHT---TTCCEEEESCGGGTTTTC
T ss_pred             CcccceEEEEeccccCcchHHHHHHH-HhccCceEEEeCCcccccchhcccc----ccc---ccceeeeeechhhhccCC
Confidence            489999999997   77888888876 567 578888876432211111111    111   112234457899999999


Q ss_pred             CEEEEccCCCcc----------ccccccHHHHhcCCCCcEEEEc
Q 022672          146 DVISLHPVLDKT----------TYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       146 DiV~l~~Plt~~----------t~~li~~~~l~~mk~gailIN~  179 (294)
                      |+|....--...          ....++.+.++.++++++|..+
T Consensus       223 Dvvy~~~~~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHc  266 (310)
T d1tuga1         223 DILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  266 (310)
T ss_dssp             SEEEECCCCGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECC
T ss_pred             ceeeecccchhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeC
Confidence            998753221110          1123566667777777777655

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=91.07  E-value=0.15  Score=42.19  Aligned_cols=86  Identities=14%  Similarity=0.126  Sum_probs=49.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhcCCEEEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l  150 (294)
                      ++|.|+|. |.||+.+++.| ...|.+|++.+|............. ......+...  .......++.+.++.++.++.
T Consensus         4 ~KILVtGatG~iG~~l~~~L-~~~G~~V~~~~R~~~~~~~~~~~~~-~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNAS-ISLGHPTYVLFRPEVVSNIDKVQML-LYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCSCCSSCHHHHHHH-HHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCCcccchhHHHHH-hhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            46999995 99999999987 4679999998876432110000000 0011111000  011122346678899999988


Q ss_pred             ccCCCcccccc
Q 022672          151 HPVLDKTTYHL  161 (294)
Q Consensus       151 ~~Plt~~t~~l  161 (294)
                      +.+........
T Consensus        82 ~~~~~~~~~~~   92 (312)
T d1qyda_          82 ALAGGVLSHHI   92 (312)
T ss_dssp             CCCCSSSSTTT
T ss_pred             hhhhcccccch
Confidence            88754443333

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.06  E-value=0.2  Score=40.41  Aligned_cols=38  Identities=24%  Similarity=0.254  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .-.+|+|.|||.|..|-..|..| ...|++|+.++....
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l-~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVL-MESGYTVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHH-HHhccceeeEeeccc
Confidence            45889999999999999999997 578999999987653

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.01  E-value=0.11  Score=38.63  Aligned_cols=28  Identities=21%  Similarity=0.507  Sum_probs=23.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEE
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY  102 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~  102 (294)
                      ++|||+|+ |+||+.+++.+ ..-++++.+
T Consensus         1 mki~i~G~~GrMG~~i~~~~-~~~~~~l~~   29 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVF-SEKGHELVL   29 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHH-hcCCCeEEE
Confidence            47999996 99999999975 677888764

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=90.96  E-value=0.19  Score=42.87  Aligned_cols=81  Identities=15%  Similarity=0.079  Sum_probs=47.9

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCC--CCccccccCCHHHHhhcCCE
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDi  147 (294)
                      -.||+|.|.|. |-||+.+++.| ...|.+|++..++.... +...............  .........++++++..+|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~L-l~~G~~V~~~vR~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQL-LEHGYKVRGTARSASKL-ANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEeCCchhH-HHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence            35999999987 88999999988 46799999877664332 1111111000000000  00011223467788899999


Q ss_pred             EEEccC
Q 022672          148 ISLHPV  153 (294)
Q Consensus       148 V~l~~P  153 (294)
                      |+.+.-
T Consensus        87 v~~~a~   92 (342)
T d1y1pa1          87 VAHIAS   92 (342)
T ss_dssp             EEECCC
T ss_pred             hhhhcc
Confidence            876554

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=90.94  E-value=0.089  Score=43.59  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      .-|+|.|||.|..|-+.|..|+ ..|.+|++++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~-~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLA-GAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHH-HHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHH-HCCCCEEEEeCCC
Confidence            4579999999999999999984 6799999998754

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=90.85  E-value=0.89  Score=36.02  Aligned_cols=70  Identities=19%  Similarity=0.288  Sum_probs=52.7

Q ss_pred             cccCCHHHHhhcCCEEE-EccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCC
Q 022672          133 KRASSMDEVLREADVIS-LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  208 (294)
Q Consensus       133 ~~~~~l~ell~~aDiV~-l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~  208 (294)
                      ....+-++++.++|+|+ +..|...+    .+.+.++.||+|+++|..-  ......++.++|.+.++...++|...
T Consensus        56 ~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~li~~l--~p~~~~~~~~~l~~~~it~~a~e~ip  126 (194)
T d1l7da2          56 TIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVLMCHL--GALTNRPVVEALTKRKITAYAMELMP  126 (194)
T ss_dssp             EEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEEEEEC--CGGGCHHHHHHHHHTTCEEEEGGGCC
T ss_pred             hcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEEEEec--ccccchhHHHHHHhcCceEEeeeccc
Confidence            34467889999999885 55564332    2345678899999999864  45677889999999999999888763

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.79  E-value=0.45  Score=37.13  Aligned_cols=112  Identities=19%  Similarity=0.121  Sum_probs=64.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhc--CCC----EEEEEcCCchhH-HHHHHhhhhhhhhhcCC-CCccccccCCHHHHhhc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEG--FKM----NLIYYDLYQATR-LEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLRE  144 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~--~g~----~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~~  144 (294)
                      .+|.|+|. |.||++++-+|+.+  ||.    .+..+|...... .+....    .+..... .........+..+.+++
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~m----dl~d~a~~~~~~~~~~~~~~~~~~~  100 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAM----ELEDSLYPLLREVSIGIDPYEVFED  100 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHH----HHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhh----hhcccccccccCccccccchhhccC
Confidence            47999996 99999999887543  453    566777654322 121111    1111111 11122345688899999


Q ss_pred             CCEEEEccCCCcccccc-----c--cH-------HHH-hcCCCCcEEEEcCCCcccCHHHHHH
Q 022672          145 ADVISLHPVLDKTTYHL-----I--NK-------ERL-ATMKKEAILVNCSRGPVIDEVALVE  192 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~l-----i--~~-------~~l-~~mk~gailIN~aRG~~vd~~aL~~  192 (294)
                      +|+|++..-. +...++     +  |.       +.+ +..+++++++=++.  .+|.-+++.
T Consensus       101 aDvVvi~ag~-~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ia  160 (175)
T d7mdha1         101 VDWALLIGAK-PRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALIC  160 (175)
T ss_dssp             CSEEEECCCC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHHH
T ss_pred             CceEEEeecc-CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHHH
Confidence            9999888742 221211     1  11       122 33466787776754  688777654

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=90.67  E-value=0.62  Score=38.52  Aligned_cols=97  Identities=14%  Similarity=0.128  Sum_probs=55.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  149 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  149 (294)
                      ...|++|++||+-.   .+ +++ +.-++++++++++++..                     ......-++++++||+|+
T Consensus       119 ~~~g~kV~vIG~~P---~v-~~l-~~~~~~~~VlE~~p~~g---------------------d~p~~~~~~lLp~aD~vi  172 (251)
T d2h1qa1         119 EVKGKKVGVVGHFP---HL-ESL-LEPICDLSILEWSPEEG---------------------DYPLPASEFILPECDYVY  172 (251)
T ss_dssp             TTTTSEEEEESCCT---TH-HHH-HTTTSEEEEEESSCCTT---------------------CEEGGGHHHHGGGCSEEE
T ss_pred             ccCCCEEEEEecch---hH-HHH-HhcCCcEEEEeCCCCCC---------------------CCCchHHHHhhhcCCEEE
Confidence            35799999999853   34 444 46778999999876421                     011123456777777776


Q ss_pred             EccCCCcccccccc---HHHHhcCCCCcEEEEcCCC------------------cccCHHHHHHHHHcCC
Q 022672          150 LHPVLDKTTYHLIN---KERLATMKKEAILVNCSRG------------------PVIDEVALVEHLKQNP  198 (294)
Q Consensus       150 l~~Plt~~t~~li~---~~~l~~mk~gailIN~aRG------------------~~vd~~aL~~aL~~g~  198 (294)
                      +.-.      -++|   ...++..|+...+|=++-.                  .++|.+.+.+.+++|.
T Consensus       173 iTGs------TlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~lf~~Gv~~lag~~v~d~~~~~~~i~~Gg  236 (251)
T d2h1qa1         173 ITCA------SVVDKTLPRLLELSRNARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAGAE  236 (251)
T ss_dssp             EETH------HHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTTSS
T ss_pred             EEec------hhhcCCHHHHHHhCCcCCEEEEECCCcccCHHHHhcCCceEeEEEEeCHHHHHHHHHcCC
Confidence            5531      1122   3445555555444333211                  1467777777777664

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.09  Score=42.66  Aligned_cols=75  Identities=15%  Similarity=0.176  Sum_probs=46.7

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCC--CEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  147 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  147 (294)
                      ..+|+|.|.|. |.||+.+++.|.+ -|  .+|++.+|++..........    +.   ..........++.+.++.+|+
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~-~g~~~~v~~~~R~~~~~~~~~~~~----i~---~~~~D~~~~~~~~~~~~~~d~   83 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILE-QGLFSKVTLIGRRKLTFDEEAYKN----VN---QEVVDFEKLDDYASAFQGHDV   83 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHH-HTCCSEEEEEESSCCCCCSGGGGG----CE---EEECCGGGGGGGGGGGSSCSE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHh-CCCCCEEEEEecChhhhcccccce----ee---eeeeccccccccccccccccc
Confidence            56789999986 9999999998743 34  48998887654321111000    00   000112233466777899999


Q ss_pred             EEEccC
Q 022672          148 ISLHPV  153 (294)
Q Consensus       148 V~l~~P  153 (294)
                      ++.|+.
T Consensus        84 vi~~~~   89 (232)
T d2bkaa1          84 GFCCLG   89 (232)
T ss_dssp             EEECCC
T ss_pred             cccccc
Confidence            988875

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=90.40  E-value=0.14  Score=40.03  Aligned_cols=33  Identities=33%  Similarity=0.507  Sum_probs=25.8

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCCc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQ  107 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~~  107 (294)
                      +|||=|||+||+.+.|.+...-..++.+. |+..
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~   36 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFI   36 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSS
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCc
Confidence            79999999999999997644456788776 4443

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.32  E-value=0.38  Score=39.55  Aligned_cols=38  Identities=24%  Similarity=0.296  Sum_probs=32.6

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      +.||++.|.|. +.||+++|+.|+ ..|++|+..|++.+.
T Consensus         1 i~GKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   39 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALL-LKGAKVALVDWNLEA   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            46899999988 679999999984 789999999987654

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.26  E-value=0.13  Score=42.19  Aligned_cols=38  Identities=18%  Similarity=0.110  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           70 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        70 ~l~gktvGIIGlG-~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .|.||++.|.|.+ .||+++|+.|+ ..|++|+..+++..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la-~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLA-ADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCcc
Confidence            6899999999985 69999999984 78999999988654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.22  E-value=0.16  Score=43.32  Aligned_cols=35  Identities=17%  Similarity=0.245  Sum_probs=30.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .|+|.|||.|..|-.+|..|+ ..|.+|++++.+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~-k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLA-EKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHH-hCCCCEEEEECCCC
Confidence            589999999999999999984 67999999987654

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=90.03  E-value=0.17  Score=39.52  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=24.9

Q ss_pred             EEEEEcCChHHHHHHHHHhh--cCCCEEEEEcC
Q 022672           75 TVGVIGAGRIGSAYARMMVE--GFKMNLIYYDL  105 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~--~~g~~V~~~d~  105 (294)
                      +|||=|||+||+.+.|.+..  ..+.+|++.+-
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd   34 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEecc
Confidence            79999999999999997643  34688887754

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.99  E-value=0.17  Score=42.71  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=28.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      |+|.|.|. |-||+.+++.| ...|.+|++.|+..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L-~~~g~~V~~~d~~~   35 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKL-MMDGHEVTVVDNFF   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCC
Confidence            68999976 99999999998 46799999998643

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=89.95  E-value=0.19  Score=41.50  Aligned_cols=39  Identities=28%  Similarity=0.282  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++.|-|. +.||+++|+.| ..-|++|+..|++.+.
T Consensus         2 ~l~GK~alITGas~GIG~aia~~l-a~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAF-AREGALVALCDLRPEG   41 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSTTH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            389999999985 78999999998 4789999999987643

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=89.88  E-value=0.24  Score=42.22  Aligned_cols=79  Identities=19%  Similarity=0.252  Sum_probs=46.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhh-hhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-GQFLKANGEQPVTWKRASSMDEVLREADVISL  150 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  150 (294)
                      .|||.|+|. |.||+.+++.| ...|.+|.+..|+..+......... +..+.. +  +. ......++.++..+|.++.
T Consensus         3 kktIlVtGatG~iG~~lv~~L-l~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~-g--D~-~d~~~~~~~a~~~~~~~~~   77 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVA-AAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQ-G--PL-LNNVPLMDTLFEGAHLAFI   77 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHH-HHTTCCEEEEESCSCSHHHHHHHTSTTEEEEE-S--CC-TTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCChHHHHHHHHHH-HhCCCeEEEEECCcchhhhhhhcccCCCEEEE-e--eC-CCcHHHHHHHhcCCceEEe
Confidence            578999995 99999999998 4678898888765443211110000 000000 0  00 0111236678899999988


Q ss_pred             ccCCCc
Q 022672          151 HPVLDK  156 (294)
Q Consensus       151 ~~Plt~  156 (294)
                      ..+...
T Consensus        78 ~~~~~~   83 (350)
T d1xgka_          78 NTTSQA   83 (350)
T ss_dssp             CCCSTT
T ss_pred             eccccc
Confidence            776443

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.78  E-value=0.17  Score=40.44  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=28.8

Q ss_pred             EEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCc
Q 022672           75 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQ  107 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~  107 (294)
                      +|+|||.|..|-+.|+.|++ ++|.+|++|+..+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999999999999987753 5799999998765

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=89.54  E-value=0.17  Score=43.04  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=32.7

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           71 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .+||+|.|.| .|-||+.+++.| ...|.+|+++|+....
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~L-l~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCCc
Confidence            4689999999 599999999998 5789999999987653

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=89.53  E-value=0.17  Score=39.61  Aligned_cols=30  Identities=23%  Similarity=0.455  Sum_probs=23.1

Q ss_pred             EEEEEcCChHHHHHHHHHhh--cCCCEEEEEc
Q 022672           75 TVGVIGAGRIGSAYARMMVE--GFKMNLIYYD  104 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~--~~g~~V~~~d  104 (294)
                      +|||=|||+||+.+.|.+..  ...++|++.+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN   33 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   33 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            79999999999999997532  2347777654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.50  E-value=0.18  Score=42.10  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=33.0

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      |.||++-|-|. +.||+++|+.|+ ..|++|+..|++...
T Consensus         2 L~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   40 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFA-KEGAQVTITGRNEDR   40 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            78999999988 679999999984 789999999987643

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.38  E-value=0.25  Score=38.65  Aligned_cols=94  Identities=18%  Similarity=0.063  Sum_probs=55.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-----h
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----R  143 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~  143 (294)
                      .-.|.+|.|.|. |.+|....+. ++..|++|++..++..+.. .        +...+.... ..+....++..     .
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQl-ak~~Ga~Viat~~s~~k~~-~--------~~~lGa~~v-i~~~~~~~~~~~~~~~~   97 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSM-LAKRGYTVEASTGKAAEHD-Y--------LRVLGAKEV-LAREDVMAERIRPLDKQ   97 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHH-HHHTTCCEEEEESCTTCHH-H--------HHHTTCSEE-EECC---------CCSC
T ss_pred             CCCCCEEEEEeccchHHHHHHHH-HHHcCCceEEecCchHHHH-H--------HHhccccee-eecchhHHHHHHHhhcc
Confidence            456889999995 9999999887 5899999999876654421 1        111121111 11111222221     2


Q ss_pred             cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 022672          144 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  180 (294)
Q Consensus       144 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  180 (294)
                      ..|+|+-++..  +    .-.+.+..|+++..+|.++
T Consensus        98 gvD~vid~vgg--~----~~~~~l~~l~~~Griv~~G  128 (176)
T d1xa0a2          98 RWAAAVDPVGG--R----TLATVLSRMRYGGAVAVSG  128 (176)
T ss_dssp             CEEEEEECSTT--T----THHHHHHTEEEEEEEEECS
T ss_pred             CcCEEEEcCCc--h----hHHHHHHHhCCCceEEEee
Confidence            46677666641  1    2266777788888888774

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=89.34  E-value=0.18  Score=39.51  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=25.4

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcC
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  105 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~  105 (294)
                      +|||=|||+||+.+.|.+...-..++.+.+.
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd   33 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcC
Confidence            6999999999999999865455788877653

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.28  E-value=0.21  Score=37.47  Aligned_cols=31  Identities=29%  Similarity=0.558  Sum_probs=24.5

Q ss_pred             EEEEEc-CChHHHHHHHHHhhcCCCEEEE-EcC
Q 022672           75 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDL  105 (294)
Q Consensus        75 tvGIIG-lG~IG~~vA~~L~~~~g~~V~~-~d~  105 (294)
                      +|+|+| .|+||+.+++.+.+.-++++.+ +|+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            699999 6999999999865567888764 453

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.05  E-value=0.21  Score=41.34  Aligned_cols=39  Identities=13%  Similarity=0.080  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.||++.|.|. +.||+++|+.|+ ..|++|+..+++...
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFA-REGAKVTITGRHAER   41 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            488999999987 789999999984 789999999987643

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.86  E-value=0.42  Score=40.52  Aligned_cols=37  Identities=32%  Similarity=0.386  Sum_probs=32.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      .|.||++.|-|. +.||+++|+.|+ ..|++|+..|+..
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la-~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFA-ERGALVVVNDLGG   41 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECCCB
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCc
Confidence            589999999988 679999999984 8899999998754

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.67  E-value=0.26  Score=40.02  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=31.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .||+|.|.|. |.||+++|+.| ...|++|+..|+...
T Consensus         1 egK~vlITGas~GIG~a~a~~l-~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAF-RARNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            4899999998 77999999998 578999998887654

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.67  E-value=0.22  Score=38.74  Aligned_cols=33  Identities=21%  Similarity=0.389  Sum_probs=26.2

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEc-CCc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQ  107 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d-~~~  107 (294)
                      +|||=|||+|||.+.|.+...-..+|.+.+ +..
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~   35 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFM   35 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCC
Confidence            699999999999999986444578888764 443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.62  E-value=0.24  Score=40.85  Aligned_cols=35  Identities=34%  Similarity=0.327  Sum_probs=27.2

Q ss_pred             CEEE-EEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           74 QTVG-VIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        74 ktvG-IIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      |+|. |.|. +.||+++|+.|+ ..|++|+..|++...
T Consensus         1 KKValITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   37 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLV-KDGFAVAIADYNDAT   37 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            4554 4465 679999999985 789999999987643

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=88.59  E-value=0.14  Score=39.96  Aligned_cols=113  Identities=17%  Similarity=0.194  Sum_probs=59.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  153 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P  153 (294)
                      .+|||=|||+|||.+.|.| ..-+.+|.+.+.......-.+.-.|+.   .++..+      ..   +-...|.+++   
T Consensus         1 ikigINGfGRIGR~~~R~l-~~~~i~iv~INd~~~~~~~ayLl~yDS---~hG~~~------~~---v~~~~~~l~i---   64 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRIL-HSRGVEVALINDLTDNKTLAHLLKYDS---IYHRFP------GE---VAYDDQYLYV---   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHHTCCEEEEECSSCHHHHHHHHHCCT---TTCSCS------SC---EEECSSEEEE---
T ss_pred             CEEEEECCcHHHHHHHHHH-hcCCCEEEEECCCcchhhhhheeeccc---ccCccc------cc---cccccceeEe---
Confidence            3799999999999999886 445778777653322211111111211   111111      11   1123444443   


Q ss_pred             CCccccccccH---HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 022672          154 LDKTTYHLINK---ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  204 (294)
Q Consensus       154 lt~~t~~li~~---~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~l  204 (294)
                       +.....+...   +.+.+-+-|.-+|==+.|.--+.+.+..-|+.| .....+
T Consensus        65 -~g~~I~~~~~~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkVii  116 (168)
T d2g82a1          65 -DGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVII  116 (168)
T ss_dssp             -TTEEEEEECCSSGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEE
T ss_pred             -cceeEEEEecCChHHCcccccCCceeEeccccccchHHhhhhhccc-cceeee
Confidence             1223333322   233333345555555688888888888888765 444444

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=88.52  E-value=0.18  Score=40.73  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=28.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      ++|.|||.|..|-..|..| ...|.+|++++.+.
T Consensus         1 m~V~IIGaG~aGL~aA~~L-~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHL-RSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHH-HTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHH-HhCCCCEEEEecCC
Confidence            4699999999999999998 46799999998653

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.43  E-value=0.97  Score=38.18  Aligned_cols=167  Identities=14%  Similarity=0.172  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhc---CCC-------EE
Q 022672           31 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG---FKM-------NL  100 (294)
Q Consensus        31 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~---~g~-------~V  100 (294)
                      +|=-+++-+|+.+|-                     .|+.|.+.+|.|.|.|.-|-.+|+.|...   .|+       ++
T Consensus         4 Ta~V~lAglinAlki---------------------~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i   62 (294)
T d1pj3a1           4 TAAVALAGLLAAQKV---------------------ISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKI   62 (294)
T ss_dssp             HHHHHHHHHHHHHHH---------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTE
T ss_pred             HHHHHHHHHHHHHHH---------------------hCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccE
Confidence            455667777777762                     23568899999999999999999986422   232       48


Q ss_pred             EEEcCCch---hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEccCCCccccccccHHHHh---cCCC
Q 022672          101 IYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLA---TMKK  172 (294)
Q Consensus       101 ~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~~Plt~~t~~li~~~~l~---~mk~  172 (294)
                      +.+|+..-   .+.+. .+.+........    ......+|+|+++  +.|+++-+..    .-++++++.++   .|.+
T Consensus        63 ~lvD~~Glv~~~r~~~-~~~~k~~~a~~~----~~~~~~~L~e~i~~~kptvliG~S~----~~g~ft~evi~~Ma~~~~  133 (294)
T d1pj3a1          63 WMFDKYGLLVKGRKAK-IDSYQEPFTHSA----PESIPDTFEDAVNILKPSTIIGVAG----AGRLFTPDVIRAMASINE  133 (294)
T ss_dssp             EEEETTEECBTTCSSC-CCTTTGGGCBCC----CSSCCSSHHHHHHHHCCSEEEECCC----SSCCSCHHHHHHHHHHCS
T ss_pred             EEEeCCCCccCCCCcc-cHHHHHHhhccc----cccchhHHHHHHHhcCCceEEEecC----CCCcCCHHHHHHHHhcCC
Confidence            88887531   11000 000000010000    0011247888876  7787766542    34678888775   4568


Q ss_pred             CcEEEEcCCCccc---CHHHHHHHHHcCCcceEEeeCCCCCCC--CC---CCccCCCCeEEccCCC
Q 022672          173 EAILVNCSRGPVI---DEVALVEHLKQNPMFRVGLDVFEDEPY--MK---PGLSEMKNAIVVPHIA  230 (294)
Q Consensus       173 gailIN~aRG~~v---d~~aL~~aL~~g~i~ga~lDV~~~EP~--~~---~~L~~~~nviiTPHia  230 (294)
                      ..++.=.|....-   ..++.++. .+|+...|.  -....|.  .+   ..--+..|+++-|=++
T Consensus       134 ~PIIFaLSNPt~~~e~~~~~a~~~-t~grai~as--Gspf~~v~~~~Gr~~~pnQ~NN~~iFPGig  196 (294)
T d1pj3a1         134 RPVIFALSNPTAQAECTAEEAYTL-TEGRCLFAS--GSPFGPVKLTDGRVFTPGQGNNVYIFPGVA  196 (294)
T ss_dssp             SCEEEECCSSGGGCSCCHHHHHHH-TTTCCEEEE--SSCCCCEECTTSCEECCEECCGGGTHHHHH
T ss_pred             CcEEEEccCCCCcCCcCHHHHHhh-ccCceEeec--CCccCCeEeCCCcEecCCCCceeccccchh
Confidence            9999999987543   23444443 455544331  1111221  01   0122567888877543

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=88.33  E-value=0.13  Score=40.28  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=25.6

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEE-cCCch
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQA  108 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~-d~~~~  108 (294)
                      +|||=|||+|||.+.|.+ ...+.+|.+. |+...
T Consensus         2 kIgINGfGRIGR~~~R~~-~~~~~~ivaINd~~~~   35 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAA-LEMGAQVVAVNDPFIA   35 (169)
T ss_dssp             CEEEECCSHHHHHHHHHH-HHHTCCEEEEECTTSC
T ss_pred             eEEEECCcHHHHHHHHHH-HhCCCcEEEECCCCcC
Confidence            699999999999999986 4557787766 44443

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=87.96  E-value=0.26  Score=38.61  Aligned_cols=31  Identities=26%  Similarity=0.415  Sum_probs=23.9

Q ss_pred             EEEEEcCChHHHHHHHHHhh---cCCCEEEEEcC
Q 022672           75 TVGVIGAGRIGSAYARMMVE---GFKMNLIYYDL  105 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~---~~g~~V~~~d~  105 (294)
                      +|||=|||+||+.+.|.+..   .-..+|.+.+.
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd   36 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND   36 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcC
Confidence            69999999999999997642   23567777654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=87.96  E-value=0.14  Score=40.12  Aligned_cols=38  Identities=18%  Similarity=0.280  Sum_probs=30.3

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      ..+.+|.|.|. |.+|....+. ++.+|++|++..++.++
T Consensus        30 ~~~~~vlV~gasGGVG~~aiQl-Ak~~Ga~Via~~~~~~k   68 (177)
T d1o89a2          30 PQDGEIVVTGASGGVGSTAVAL-LHKLGYQVVAVSGREST   68 (177)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHH-HHHTTCCEEEEESCGGG
T ss_pred             CCCCcEEEEEccccchHHHHHH-HHHcCCCeEEEecchhH
Confidence            34557877766 9999999987 58999999998877654

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=87.75  E-value=0.24  Score=42.17  Aligned_cols=32  Identities=28%  Similarity=0.237  Sum_probs=27.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      ++|.|+|. |-||+.+++.| ...|.+|++.|+.
T Consensus         1 MKiLItG~tGfIG~~l~~~L-~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQL-LQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHH-HHCcCEEEEEECC
Confidence            46888876 99999999998 4789999999864

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=87.59  E-value=0.83  Score=38.84  Aligned_cols=166  Identities=16%  Similarity=0.143  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCcccCcccCCCEEEEEcCChHHHHHHHHHhhc---CCC-------EE
Q 022672           31 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG---FKM-------NL  100 (294)
Q Consensus        31 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~L~~~---~g~-------~V  100 (294)
                      +|=-+++-+++.+|-                     .|+.|.+.+|.|.|.|.-|..+|+.|...   .|+       ++
T Consensus         4 Ta~V~lAglinAlki---------------------~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i   62 (308)
T d1o0sa1           4 TASVIVAGLLTCTRV---------------------TKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRI   62 (308)
T ss_dssp             HHHHHHHHHHHHHHH---------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTE
T ss_pred             HHHHHHHHHHHHHHH---------------------hCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceE
Confidence            455667777777762                     23468889999999999999999987422   122       48


Q ss_pred             EEEcCCchhHHHHH-HhhhhhhhhhcCCCCccccccCCHHHHhhcC--CEEEEccCCCccccccccHHHHhcC---CCCc
Q 022672          101 IYYDLYQATRLEKF-VTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATM---KKEA  174 (294)
Q Consensus       101 ~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~~Plt~~t~~li~~~~l~~m---k~ga  174 (294)
                      +.+|+..--..++- ...+....      ........++.++++..  ++++-+.    ...++++++.++.|   .+..
T Consensus        63 ~~vD~~Glv~~~r~d~~~~k~~~------a~~~~~~~~l~~~i~~~kptvliG~s----~~~g~ft~evv~~Ma~~~~~P  132 (308)
T d1o0sa1          63 YLMDIDGLVTKNRKEMNPRHVQF------AKDMPETTSILEVIRAARPGALIGAS----TVRGAFNEEVIRAMAEINERP  132 (308)
T ss_dssp             EEEETTEECBTTCSSCCGGGTTT------CBSSCCCCCHHHHHHHHCCSEEEECS----SCTTCSCHHHHHHHHHHCSSC
T ss_pred             EEEeCCCCccCCCcccCHHHHHH------HHhcccCCcHHHHHhccccccEEecc----cccCCCCHHHHHHHHhhCCCc
Confidence            88886532110000 00000000      00111234677777644  4554442    23678888888665   4888


Q ss_pred             EEEEcCCCcccC---HHHHHHHHHcCCcceEEeeCCCCCCCC-C---CCccCCCCeEEccCCC
Q 022672          175 ILVNCSRGPVID---EVALVEHLKQNPMFRVGLDVFEDEPYM-K---PGLSEMKNAIVVPHIA  230 (294)
Q Consensus       175 ilIN~aRG~~vd---~~aL~~aL~~g~i~ga~lDV~~~EP~~-~---~~L~~~~nviiTPHia  230 (294)
                      ++.=.|.-..--   .++.+++ ..|+...|.  -.+.+|.. +   ...-+..|+++-|=++
T Consensus       133 IIFaLSNPtp~~E~~~eda~~~-t~G~ai~At--GSpfp~V~~~Gr~~~p~Q~NN~liFPGIg  192 (308)
T d1o0sa1         133 IIFALSNPTSKAECTAEEAYTF-TNGAALYAS--GSPFPNFELNGHTYKPGQGNNAYIFPGVA  192 (308)
T ss_dssp             EEEECCSSGGGCSSCHHHHHHT-TTSCCEEEE--SSCCCCEEETTEEECCEECCGGGTHHHHH
T ss_pred             EEEEccCCCCCCCCCHHHHHhh-ccCcEEEec--CCCCCCeeecCceecccccceeeeccchh
Confidence            999888876533   3333333 344444332  12222210 1   1133567888888554

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.67  E-value=0.32  Score=41.62  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=30.8

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           72 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        72 ~gktvGIIG-lG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .+++|.|.| .|-||+.+++.| ..-|.+|+++|+...
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L-~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRL-KHEGHYVIASDWKKN   50 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEeCCCc
Confidence            678899998 599999999998 578999999987544

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=86.51  E-value=0.34  Score=34.78  Aligned_cols=35  Identities=11%  Similarity=0.038  Sum_probs=27.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHh--hcCCCEEEEEcCCc
Q 022672           73 GQTVGVIGAGRIGSAYARMMV--EGFKMNLIYYDLYQ  107 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~--~~~g~~V~~~d~~~  107 (294)
                      .+++.|||-|.+|-++|..|+  ...|.+|..+.+..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            378999999999999997642  24588998887654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=86.38  E-value=0.47  Score=38.94  Aligned_cols=36  Identities=19%  Similarity=0.132  Sum_probs=29.0

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      ||.+.|-|. +.||+++|+.|+ .-|++|+..+++...
T Consensus         2 gKValITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   38 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLG-KEGLRVFVCARGEEG   38 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            566667776 679999999985 789999999987543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=86.05  E-value=0.41  Score=40.55  Aligned_cols=34  Identities=18%  Similarity=0.314  Sum_probs=28.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCCc
Q 022672           74 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQ  107 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~~  107 (294)
                      |+|+|||.|.-|-.+|..|++ +.+.+|++++++.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            689999999999999987743 3557999998875

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.69  E-value=0.31  Score=34.58  Aligned_cols=36  Identities=25%  Similarity=0.406  Sum_probs=28.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcC
Q 022672           69 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  105 (294)
Q Consensus        69 ~~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~  105 (294)
                      .+..||+|.|||.|.-|..+|.-|+ ....+++...+
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~-~~ak~v~~~~~   63 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLT-PVAKHPIYQSL   63 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHT-TTSCSSEEEEC
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHH-HhcCEEEEEEe
Confidence            4689999999999999999999874 55555554433

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=85.69  E-value=1.1  Score=36.83  Aligned_cols=115  Identities=13%  Similarity=0.022  Sum_probs=64.5

Q ss_pred             cCCCEEEEEcCCh--HHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcC-CCCccccccCCHHHHh--hcC
Q 022672           71 LKGQTVGVIGAGR--IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVL--REA  145 (294)
Q Consensus        71 l~gktvGIIGlG~--IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell--~~a  145 (294)
                      -.|++|.=+|.|.  +...+|+.+  +-+.+|+++|.++... +...+.    +.... ...+.. ...++.+.+  ...
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v--~~~g~V~~vD~~e~~~-~~A~~n----~~~~~~~~nv~~-~~~Di~~~~~~~~f  155 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYAL--NGKGTLTVVERDEDNL-KKAMDN----LSEFYDIGNVRT-SRSDIADFISDQMY  155 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHH--TTSSEEEEECSCHHHH-HHHHHH----HHTTSCCTTEEE-ECSCTTTCCCSCCE
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHh--CCCcEEEEEECCHHHH-HHHHHH----HHHhcCCCceEE-EEeeeeccccccee
Confidence            3678999998865  444555543  4567999999876432 111111    11111 111111 123444444  347


Q ss_pred             CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 022672          146 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  198 (294)
Q Consensus       146 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  198 (294)
                      |.|++.+|...   ..+ +...+.||||.+++-.. ..+-..+.+.++|++..
T Consensus       156 D~V~ld~p~p~---~~l-~~~~~~LKpGG~lv~~~-P~i~Qv~~~~~~l~~~g  203 (250)
T d1yb2a1         156 DAVIADIPDPW---NHV-QKIASMMKPGSVATFYL-PNFDQSEKTVLSLSASG  203 (250)
T ss_dssp             EEEEECCSCGG---GSH-HHHHHTEEEEEEEEEEE-SSHHHHHHHHHHSGGGT
T ss_pred             eeeeecCCchH---HHH-HHHHHhcCCCceEEEEe-CCcChHHHHHHHHHHCC
Confidence            99999988432   223 67778899999987531 11223456777776543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.24  E-value=0.49  Score=38.35  Aligned_cols=34  Identities=29%  Similarity=0.436  Sum_probs=29.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           73 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      -++|.|||.|.-|-..|..| ...|.+|+++..+.
T Consensus         5 ~~kViVIGaG~aGL~aA~~L-~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQL-QSFGMDVTLLEARD   38 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHH-HhCCCCEEEEeCCC
Confidence            45799999999999999998 57899999997653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=84.95  E-value=0.33  Score=37.82  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=27.4

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  107 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~  107 (294)
                      +|.|||.|..|-+.|..| ...|. +|++++.+.
T Consensus         2 ~V~IIGaG~aGL~aA~~L-~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRL-SEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHH-HHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHH-HhCCCCcEEEEECCC
Confidence            589999999999999998 46786 699998754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.73  E-value=0.26  Score=40.63  Aligned_cols=33  Identities=18%  Similarity=0.344  Sum_probs=29.4

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      +|.|||.|..|..+|..| +..|.+|.++++++.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L-~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLL-HKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHH-HHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHH-HHCCCCEEEEeCCCC
Confidence            499999999999999998 578999999998764

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.68  E-value=0.61  Score=39.52  Aligned_cols=32  Identities=25%  Similarity=0.188  Sum_probs=26.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCC
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  106 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~  106 (294)
                      |+|.|.|. |-||+.+++.| ...|.+|+++|+.
T Consensus         2 K~ILVTGatGfIG~~lv~~L-l~~g~~V~~~d~~   34 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVEL-IENGYDCVVADNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCcCeEEEEECC
Confidence            67777766 99999999998 4679999999753

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=84.42  E-value=0.34  Score=37.41  Aligned_cols=38  Identities=18%  Similarity=0.198  Sum_probs=31.5

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           71 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        71 l~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      ..|.+|.|-|. |.+|....+. ++.+|++|++..++.++
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQl-Ak~~Ga~Viat~~s~~k   60 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSM-LNKRGYDVVASTGNREA   60 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHH-HHHHTCCEEEEESSSST
T ss_pred             CCCCEEEEeCCcchHHHHHHHH-HHHcCCceEEEecCHHH
Confidence            45667999984 9999999997 68999999998876544

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.12  E-value=0.76  Score=37.51  Aligned_cols=40  Identities=15%  Similarity=0.062  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhh--cCCCEEEEEcCCchh
Q 022672           70 LLKGQTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQAT  109 (294)
Q Consensus        70 ~l~gktvGIIGl-G~IG~~vA~~L~~--~~g~~V~~~d~~~~~  109 (294)
                      .|.||++-|-|. +.||+++|+.|++  .-|++|+..+++...
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~   45 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESM   45 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHH
Confidence            588998888888 5799999999864  369999999987653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.78  E-value=0.6  Score=34.47  Aligned_cols=35  Identities=20%  Similarity=0.269  Sum_probs=28.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHh---hcCCCEEEEEcCCc
Q 022672           73 GQTVGVIGAGRIGSAYARMMV---EGFKMNLIYYDLYQ  107 (294)
Q Consensus        73 gktvGIIGlG~IG~~vA~~L~---~~~g~~V~~~d~~~  107 (294)
                      ++++.|||-|.+|-++|..|+   ++.|.+|+..++..
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            679999999999999997664   35799999887654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.73  E-value=0.55  Score=37.73  Aligned_cols=33  Identities=15%  Similarity=0.169  Sum_probs=28.4

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCch
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA  108 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~  108 (294)
                      +|.|||.|..|..+|..| +..|. +|.++++...
T Consensus         3 ~V~IvGaG~aGl~~A~~L-~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALAL-HQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHH-HhCCCCeEEEEeCCCC
Confidence            699999999999999998 57896 8989987653

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.44  E-value=0.78  Score=34.27  Aligned_cols=38  Identities=8%  Similarity=0.014  Sum_probs=31.5

Q ss_pred             cccCCCEEEEE--cCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           69 NLLKGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        69 ~~l~gktvGII--GlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      +..-++.+.|+  |-|.||.++|..| ..+|++|....+..
T Consensus        35 ~~~~~~~vvi~d~ggg~ig~e~A~~l-a~~G~~Vtlv~~~~   74 (156)
T d1djqa2          35 KKKIGKRVVILNADTYFMAPSLAEKL-ATAGHEVTIVSGVH   74 (156)
T ss_dssp             CSCCCSEEEEEECCCSSHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             ccccCCceEEEecCCChHHHHHHHHH-HHcCCeEEEEecCC
Confidence            34557778887  8899999999998 58999999998764

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.17  E-value=1.6  Score=38.55  Aligned_cols=105  Identities=15%  Similarity=0.179  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCC-EEEEEcCCchhHHH--HHHhhhhhhhhhcCC--CC------ccccccCCHHH
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLE--KFVTAYGQFLKANGE--QP------VTWKRASSMDE  140 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~-~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~--~~------~~~~~~~~l~e  140 (294)
                      .|.++.=||+| .|+.+... ++.+|+ +|+|+|.++.....  .............+.  ..      .+.......++
T Consensus       216 pgd~fLDLGCG-~G~~vl~a-A~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~  293 (406)
T d1u2za_         216 KGDTFMDLGSG-VGNCVVQA-ALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE  293 (406)
T ss_dssp             TTCEEEEESCT-TSHHHHHH-HHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred             CCCEEEeCCCC-CcHHHHHH-HHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccc
Confidence            56788889998 46555554 456776 89999988643211  111111110100000  00      01111234667


Q ss_pred             HhhcCCEEEEccC-CCccccccccHHHHhcCCCCcEEEEc
Q 022672          141 VLREADVISLHPV-LDKTTYHLINKERLATMKKEAILVNC  179 (294)
Q Consensus       141 ll~~aDiV~l~~P-lt~~t~~li~~~~l~~mk~gailIN~  179 (294)
                      .+..+|+|+++.- ..++....+ .+.+..||||+.||..
T Consensus       294 ~~~~adVV~inn~~f~~~l~~~L-~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         294 LIPQCDVILVNNFLFDEDLNKKV-EKILQTAKVGCKIISL  332 (406)
T ss_dssp             HGGGCSEEEECCTTCCHHHHHHH-HHHHTTCCTTCEEEES
T ss_pred             ccccceEEEEecccCchHHHHHH-HHHHHhcCCCcEEEEe
Confidence            8899999987532 223333444 6788999999999864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.06  E-value=0.52  Score=37.68  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=29.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      +|++.|-|. +.||+++|+.|+ ..|++|+..|++.+
T Consensus         1 DK~alITGas~GIG~aiA~~la-~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALK-ARGYRVVVLDLRRE   36 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HHTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCcc
Confidence            477888877 789999999984 78999999998754

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.82  E-value=0.55  Score=40.51  Aligned_cols=32  Identities=31%  Similarity=0.294  Sum_probs=27.9

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcC
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDL  105 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~  105 (294)
                      ||+|.|.|. |-||+.+++.| ...|.+|+++|.
T Consensus         1 g~kILVTGatGfiG~~lv~~L-l~~g~~V~~iDn   33 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHL-SKKNYEVCIVDN   33 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEec
Confidence            789999987 99999999998 578999999984

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.29  E-value=0.56  Score=36.21  Aligned_cols=31  Identities=16%  Similarity=0.143  Sum_probs=28.0

Q ss_pred             EEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           76 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        76 vGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      |.|||.|..|...|..|+ ..|.+|++++++.
T Consensus         8 viViGaG~~Gl~~A~~La-~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLS-VDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHH-HTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHH-HCCCCEEEEcCCC
Confidence            899999999999999985 6799999999864

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.11  E-value=1.6  Score=33.85  Aligned_cols=33  Identities=18%  Similarity=0.133  Sum_probs=25.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCC--EEEEEcCCc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQ  107 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~--~V~~~d~~~  107 (294)
                      |+|.|.|. |.||+.+++.|. .-|.  +|+...+++
T Consensus         3 KkIlItGatG~iG~~lv~~L~-~~~~~~~v~~~~r~~   38 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRIL-SEPTLAKVIAPARKA   38 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHH-HCTTCCEEECCBSSC
T ss_pred             CEEEEECCCcHHHHHHHHHHH-hCCCeEEEEEEeCCc
Confidence            79999998 999999999874 5564  676665543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.95  E-value=0.71  Score=38.33  Aligned_cols=34  Identities=15%  Similarity=0.122  Sum_probs=28.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      |+|.|.|. |-||+.+++.| ...|.+|++.|+...
T Consensus         1 k~vLItG~tGfiG~~l~~~L-l~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLL-LEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHH-HHCcCEEEEEECCCC
Confidence            68889976 99999999998 467999999987653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=81.89  E-value=0.43  Score=36.23  Aligned_cols=33  Identities=15%  Similarity=0.141  Sum_probs=25.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCE--EEEEcC
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMN--LIYYDL  105 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~--V~~~d~  105 (294)
                      .+++|.|||-|.+|-.+|..| +.+|.+  |+..++
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l-~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGL-RASGWEGNIRLVGD   36 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHH-HHTTCCSEEEEECS
T ss_pred             CCCCEEEECCcHHHHHHHHHH-HHcCCceEEEEecC
Confidence            367899999999999999987 566654  544443

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=81.86  E-value=4.8  Score=31.45  Aligned_cols=66  Identities=12%  Similarity=0.124  Sum_probs=48.5

Q ss_pred             ccCCHHHHhhcCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeCCCCC
Q 022672          134 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE  210 (294)
Q Consensus       134 ~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~E  210 (294)
                      ...+.+++. +||+|+..-|.+        .+.++.||+|+++|-.-.  .....+++++|.+.++...++|.....
T Consensus        57 i~~~~~~~~-~~diilkv~~p~--------~~e~~~lk~~~~li~~l~--p~~~~ell~~l~~~~it~~s~E~ipr~  122 (193)
T d1pjca2          57 VVPSAKDAW-SREMVVKVKEPL--------PAEYDLMQKDQLLFTYLH--LAAARELTEQLMRVGLTAIAYETVELP  122 (193)
T ss_dssp             EESSHHHHH-TSSEEECSSCCC--------GGGGGGCCTTCEEEECCC--GGGCHHHHHHHHHHTCEEEEGGGCCCT
T ss_pred             eeecccccc-ccceEEEeccCC--------HHHHHhhhcCceEEEecC--cccchHHHHHHHHcCCEEEEeeecccc
Confidence            345667776 589887665533        345788999999987743  445678999999999999998876543

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.75  E-value=0.65  Score=37.35  Aligned_cols=35  Identities=26%  Similarity=0.306  Sum_probs=29.0

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           73 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        73 gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      +.+|.|.|. |.||+++|+.|+ ..|++|+..|+...
T Consensus         2 ~gkVlITGas~GIG~aia~~l~-~~G~~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFK-KNGYTVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHH-HTTEEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCch
Confidence            346778876 899999999984 78999999998764

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.59  E-value=0.45  Score=36.71  Aligned_cols=19  Identities=47%  Similarity=0.823  Sum_probs=17.2

Q ss_pred             EEEEEcCChHHHHHHHHHh
Q 022672           75 TVGVIGAGRIGSAYARMMV   93 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~   93 (294)
                      +|+|+|+|.+|+.+++.|.
T Consensus         6 ~I~l~G~G~VG~~l~~~l~   24 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLL   24 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHH
Confidence            5899999999999999874

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.45  E-value=0.68  Score=36.51  Aligned_cols=34  Identities=12%  Similarity=0.269  Sum_probs=27.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhhc------CCCEEEEEcCCc
Q 022672           74 QTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQ  107 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~~------~g~~V~~~d~~~  107 (294)
                      .+|+|||.|.-|-+.|..|++.      .+++|.+|+..+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            4799999999999999887542      457899998764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.33  E-value=0.64  Score=38.92  Aligned_cols=33  Identities=12%  Similarity=0.258  Sum_probs=28.7

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCch
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  108 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~  108 (294)
                      .|.|||.|..|..+|+.|+ ..|.+|++++.+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~-~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELK-KLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHG-GGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHH-hCCCcEEEEECCCC
Confidence            5899999999999999984 67999999987653

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=81.23  E-value=0.61  Score=37.75  Aligned_cols=32  Identities=31%  Similarity=0.324  Sum_probs=28.2

Q ss_pred             EEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           75 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        75 tvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      .|.|||.|.+|.++|..|+ ..|.+|+++|+..
T Consensus         6 DvvIIGaGi~Gls~A~~La-~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLA-KENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHH-HCCCcEEEEeCCC
Confidence            3999999999999999985 6799999999754

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=81.18  E-value=0.91  Score=37.55  Aligned_cols=33  Identities=27%  Similarity=0.231  Sum_probs=27.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           74 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        74 ktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      |+|.|.|. |-||+.+++.| ..-|..+++.+.+.
T Consensus         3 kkIlITG~tGfiG~~l~~~L-~~~g~~vi~~~~~~   36 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQL-EQRGDVELVLRTRD   36 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHH-TTCTTEEEECCCTT
T ss_pred             CEEEEEcCCcHHHHHHHHHH-HHCcCEEEEecCch
Confidence            67999987 99999999998 57788888877543

>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB
species: Escherichia coli [TaxId: 562]

Probab=81.17  E-value=1.7  Score=37.75  Aligned_cols=127  Identities=12%  Similarity=0.104  Sum_probs=76.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCchhHHHHHHhhhhhhhhhcCCCCcccc-----ccCCHHHHhhc
Q 022672           70 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-----RASSMDEVLRE  144 (294)
Q Consensus        70 ~l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~ell~~  144 (294)
                      .|.|-+|.=++-+..|-..++.| ..+|++|+-..+-......+....+.... ..+...+...     ...-+.+|+++
T Consensus         8 PL~GirVld~~~~~agp~~~~~L-ad~GAeVIkvE~p~~gd~~r~~~~~~~~~-n~~K~si~ldl~~~~G~~~~~~Lv~~   85 (402)
T d1xk7a1           8 PLAGLRVVFSGIEIAGPFAGQMF-AEWGAEVIWIENVAWADTIRVQPNYPQLS-RRNLHALSLNIFKDEGREAFLKLMET   85 (402)
T ss_dssp             TTTTCEEEEECCSSHHHHHHHHH-HHTTCEEEEEECSSSCCGGGGSSSHHHHH-TTTCEEEEECTTSHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCChhHHHHHHHHH-HHhCCeEEEECCCCCCCccccCCchhHHh-CCCCeEEEEeCcCHHHHHHHHHHHhh
Confidence            49999999999888887777887 58999999887543111100000111111 1122211111     11237799999


Q ss_pred             CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC-CC-----cc---cCHHHHHHHHHcCCc
Q 022672          145 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS-RG-----PV---IDEVALVEHLKQNPM  199 (294)
Q Consensus       145 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a-RG-----~~---vd~~aL~~aL~~g~i  199 (294)
                      ||+|+-...-..-.+-=++.+.++.++|.-+.+.++ -|     ..   -..+.+++|+ +|..
T Consensus        86 aDv~i~n~rpg~~~~lGl~~~~L~~~nP~lI~~sisgfG~~~~gp~~~~~~~D~~~qA~-sG~~  148 (402)
T d1xk7a1          86 TDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAF-SGYL  148 (402)
T ss_dssp             CSEEEEECSSSHHHHTTCCHHHHHHHCTTCEEEEEESSCSSSCTTTTTSCCCHHHHHHH-HTSG
T ss_pred             cCCceeeecccccccccccccchhhccccccceeeecccCCcCccccCCCCcccccccc-cchh
Confidence            999987766222223336788999999999998883 33     22   2345556664 5544

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=81.06  E-value=0.48  Score=36.56  Aligned_cols=35  Identities=14%  Similarity=0.181  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           72 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        72 ~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      +++.|.|||-|..|.+.|..+ ..+|++|+.+++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~-ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYA-ARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHH-HTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HHcCCceEEEEeec
Confidence            567899999999999999886 57899999988654

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=80.89  E-value=0.69  Score=38.03  Aligned_cols=37  Identities=19%  Similarity=0.197  Sum_probs=31.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhhcCCCEEEEEcCCc
Q 022672           71 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  107 (294)
Q Consensus        71 l~gktvGIIGlG~IG~~vA~~L~~~~g~~V~~~d~~~  107 (294)
                      ....-|.|||.|.-|-..|..|++..|++|..++..+
T Consensus        31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          31 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            3456799999999999999987645799999999764

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.22  E-value=1.1  Score=34.48  Aligned_cols=33  Identities=15%  Similarity=0.202  Sum_probs=26.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhh-cCCCEEEEEcCC
Q 022672           74 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLY  106 (294)
Q Consensus        74 ktvGIIGlG~IG~~vA~~L~~-~~g~~V~~~d~~  106 (294)
                      ++|.|||.|.+|-++|..|++ ..+.+|+.+++.
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            479999999999999998742 347789888764

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=80.16  E-value=0.87  Score=30.47  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=30.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhhcCCCEEEEEcCCchh
Q 022672           72 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  109 (294)
Q Consensus        72 ~gktvGIIGl-G~IG~~vA~~L~~~~g~~V~~~d~~~~~  109 (294)
                      .|.+|.|.|. |.+|....+. ++.+|++|++...++++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQl-ak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVAL-LHKLGYQVVAVSGREST   68 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHH-HHHTTCCEEEEESCGGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHH-HHHcCCeEEEEECCHHH
Confidence            5778999877 9999999997 48999999998776543