Citrus Sinensis ID: 022683

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MAVQAQLYPENLGNLPMCGLQMQQDWAVINPVPVSSAAINADLRFSFQDTRHHHHFLFAHPDHSQQNPHQNLVFDSNSKASSSSSSTRAGNIFSSMAALPQSLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCDSCDDNNREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGSDF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccccccccEEEEcccccccHHHHHHccccccccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccccccccccccccHHcccccHHHcccccEEEEEEccccEEccHHHHHHHccccccccccccEEEEEEccc
Coil and Loop (DISEMBL)
mavqaqlypenlgnlpmcglqmqqdwavinpvpvssaainadlrfsfqdtrhhhhflfahpdhsqqnphqnlvfdsnskasssssstraGNIFSSMAALPQSLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVSNraedaesvccdscddnnREQELKEERRKLACKrcnsrnscvlllpcrhlcsckqceaflvscpvcnsakVASMEVFGSDF
Flexible Loop (DISEMBL)
MAVQAQLYPENLGNLPMCGLQMQQDWAVINPVPVSSAAINADLRFSFQDTRHHHHFLFAHPDHSQQNPHQNLVFDSNSKASSSSSSTRAGNIFSSMAALPQSLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVSnraedaesvccdscddnNREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGSDF
Low Complexity Region (SEG)
MAVQAQLYPENLGNLPMCGLQMQQDWAVINPVPVSSAAINADLRFSFQDTRhhhhflfahpdhSQQNPHQNLVFDsnskassssssTRAGNIFSSMAALPQSLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCDSCDDNNreqelkeerrklACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGSDF
Disordered region (IsUnstruct)
*******YPENLGNLPMCGLQMQQDWAVINPVPVSSAAINADLRF*************************************************************LELQRQELECILHIQSERL*******************************************************************MVMDLSNTLEQVKERIVLVSNRA****SVCCD*****************LACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVAS********
Disordered Region (DISOPRED)
MAVQAQLYPENLGNLPMC****************************************************************************************LELQRQELECILHIQSERLR***********GAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTL*********************************LKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGSDF
Disordered Region (DISEMBL)
MAVQAQLYPENLGNLPMCGLQMQQDWAVINPVPVSSAAINADLRFSFQDTRHHHHFLFAHPDHSQQNPHQNLVF**************AGNIFSSMAALPQSLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVSN********CCDSCDDNNREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGSDF
Disordered Region (DISPRO)
MAVQAQLYPENLGNLPMCGLQMQQDWAVINPVPVSSAAINADLRFSFQDTRHHHHFLFAHPDHS*******************************MAALPQSLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIV*******************************KLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGSDF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVQAQLYPENLGNLPMCGLQMQQDWAVINPVPVSSAAINADLRFSFQDTRHHHHFLFAHPDHSQQNPHQNLVFDSNSKASSSSSSTRAGNIFSSMAALPQSLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxSESWQRLARANEAMVMDLSNTxxxxxxxxxxxxxxxxxxxxxCCDSCDDNNREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGSDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
O62640	358	Putative inhibitor of apo	no	no	0.358	0.293	0.235	2e-05
P41435	286	Apoptosis inhibitor 1 OS=	N/A	no	0.378	0.388	0.272	2e-05
O08863	600	Baculoviral IAP repeat-co	yes	no	0.351	0.171	0.259	4e-05
Q60989	496	E3 ubiquitin-protein liga	no	no	0.211	0.125	0.322	5e-05
P98170	497	E3 ubiquitin-protein liga	yes	no	0.204	0.120	0.333	7e-05
Q96P09	236	Baculoviral IAP repeat-co	no	no	0.474	0.588	0.262	8e-05
Q9R0I6	496	E3 ubiquitin-protein liga	no	no	0.211	0.125	0.322	0.0001
Q13489	604	Baculoviral IAP repeat-co	no	no	0.252	0.122	0.270	0.0001
A1E2V0	604	Baculoviral IAP repeat-co	no	no	0.351	0.170	0.211	0.0002
A9ULZ2	345	Baculoviral IAP repeat-co	N/A	no	0.184	0.156	0.403	0.0002

>sp|O62640|PIAP_PIG Putative inhibitor of apoptosis OS=Sus scrofa GN=PIAP PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 186 LARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCDSCDDNNREQELKEERRKLACK 245
           L + N A  +   N+L+++   +       +D + +  ++  D + E++L+  + +  CK
Sbjct: 254 LVKGNYAATI-FKNSLQEIDPMLYKHLFVQQDIKYIPTENVSDLSMEEQLRRLQEERTCK 312

Query: 246 RCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS 291
            C  +   ++ +PC HL  CK C   L  CP+C      ++  F S
Sbjct: 313 VCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRGTIKGTVRTFLS 358

Sus scrofa (taxid: 9823)

>sp|P41435|IAP1_NPVAC Apoptosis inhibitor 1 OS=Autographa californica nuclear polyhedrosis virus GN=IAP1 PE=4 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 170 EACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCDSCDDN 229
           + C+R      ++WQR A  N      LS   ++  +  + V++          D  DD+
Sbjct: 173 DCCVRDWHTNEDTWQRHAAENPQCYFVLSVKGKEFCQNSITVTHV---------DKRDDD 223

Query: 230 NREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLV-SCPVCNSAKVASMEV 288
           N  +   +   K  CK C  R    +L+PCRH C C QC   L   CP C       +++
Sbjct: 224 NLNENADDIEEKYECKVCLERQRDAVLMPCRHFCVCVQCYFGLDQKCPTCRQDVTDFIKI 283

Query: 289 F 289
           F
Sbjct: 284 F 284

Acts by blocking cellular apoptosis rather than by preventing viral stimulation of apoptosis.

Lepidoptera (taxid: 7088)

>sp|O08863|BIRC3_MOUSE Baculoviral IAP repeat-containing protein 3 OS=Mus musculus GN=Birc3 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 186 LARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCDSCDDNNREQELKEERRKLACK 245
           LA+ N A      N+L ++   +       +D  S+  D       E++L++ + +  CK
Sbjct: 496 LAKGNTA-ATSFRNSLREIDPALYRDIFVQQDIRSLPTDDIAALPMEEQLRKLQEERMCK 554

Query: 246 RCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVF 289
            C  R   ++ +PC HL  CK C   L  CP+C      ++  F
Sbjct: 555 VCMDREVSIVFIPCGHLVVCKDCAPSLRKCPICRGTIKGTVRTF 598

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, mitogenic kinase signaling and cell proliferation, as well as cell invasion and metastasis. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and regulates both canonical and non-canonical NF-kappa-B signaling by acting in opposite directions: acts as a positive regulator of the canonical pathway and suppresses constitutive activation of non-canonical NF-kappa-B signaling. The target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, RIPK2, RIPK3, RIPK4, CASP3, CASP7, CASP8, TRAF1, and BCL10. Acts as an important regulator of innate immune signaling via regulation of Toll-like receptors (TLRs), Nodlike receptors (NLRs) and RIG-I like receptors (RLRs), collectively referred to as pattern recognition receptors (PRRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q60989|XIAP_MOUSE E3 ubiquitin-protein ligase XIAP OS=Mus musculus GN=Xiap PE=1 SV=2

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 228 DNNREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASME 287
           D + E++L+  + +  CK C  RN  ++ +PC HL +CKQC   +  CP+C +      +
Sbjct: 433 DISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQK 492

Query: 288 VF 289
           +F
Sbjct: 493 IF 494

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, copper homeostasis, mitogenic kinase signaling, cell proliferation, as well as cell invasion and metastasis. Acts as a direct caspase inhibitor. Directly bind to the active site pocket of CASP3 and CASP7 and obstructs substrate entry. Inactivates CASP9 by keeping it in a monomeric, inactive state. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and the target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, CASP3, CASP7, CASP8, CASP9, MAP3K2/MEKK2, DIABLO/SMAC, AIFM1, CCS and BIRC5/survivin. Ubiquitinion of CCS leads to enhancement of its chaperone activity toward its physiologic target, SOD1, rather than proteasomal degradation. Ubiquitinion of MAP3K2/MEKK2 and AIFM1 does not lead to proteasomal degradation. Plays a role in copper homeostasis by ubiquitinationg COMMD1 and promoting its proteasomal degradation. Can also function as E3 ubiquitin-protein ligase of the NEDD8 conjugation pathway, targeting effector caspases for neddylation and inactivation. Regulates the BMP signaling pathway and the SMAD and MAP3K7/TAK1 dependent pathways leading to NF-kappa-B and JNK activation. Acts as an important regulator of innate immune signaling via regulation of Nodlike receptors (NLRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8. Acts as a positive regulator of Wnt signaling and ubiquitinates TLE1, TLE2, TLE3, TLE4 and AES. Ubiquitination of TLE3 results in inhibition of its interaction with TCF7L2/TCF4 thereby allowing efficient recruitment and binding of the transcriptional coactivator beta-catenin to TCF7L2/TCF4 that is required to initiate a Wnt-specific transcriptional program.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P98170|XIAP_HUMAN E3 ubiquitin-protein ligase XIAP OS=Homo sapiens GN=XIAP PE=1 SV=2

 Score = 48.1 bits (113), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 232 EQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS 291
           E++L+  + +  CK C  RN  ++ +PC HL +CKQC   +  CP+C +      ++F S
Sbjct: 438 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 497

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, copper homeostasis, mitogenic kinase signaling, cell proliferation, as well as cell invasion and metastasis. Acts as a direct caspase inhibitor. Directly bind to the active site pocket of CASP3 and CASP7 and obstructs substrate entry. Inactivates CASP9 by keeping it in a monomeric, inactive state. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and the target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, CASP3, CASP7, CASP8, CASP9, MAP3K2/MEKK2, DIABLO/SMAC, AIFM1, CCS and BIRC5/survivin. Ubiquitinion of CCS leads to enhancement of its chaperone activity toward its physiologic target, SOD1, rather than proteasomal degradation. Ubiquitinion of MAP3K2/MEKK2 and AIFM1 does not lead to proteasomal degradation. Plays a role in copper homeostasis by ubiquitinationg COMMD1 and promoting its proteasomal degradation. Can also function as E3 ubiquitin-protein ligase of the NEDD8 conjugation pathway, targeting effector caspases for neddylation and inactivation. Regulates the BMP signaling pathway and the SMAD and MAP3K7/TAK1 dependent pathways leading to NF-kappa-B and JNK activation. Acts as an important regulator of innate immune signaling via regulation of Nodlike receptors (NLRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8. Acts as a positive regulator of Wnt signaling and ubiquitinates TLE1, TLE2, TLE3, TLE4 and AES. Ubiquitination of TLE3 results in inhibition of its interaction with TCF7L2/TCF4 thereby allowing efficient recruitment and binding of the transcriptional coactivator beta-catenin to TCF7L2/TCF4 that is required to initiate a Wnt-specific transcriptional program.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q96P09|BIRC8_HUMAN Baculoviral IAP repeat-containing protein 8 OS=Homo sapiens GN=BIRC8 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 21/160 (13%)

Query: 149 MNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERI 208
           ++L R  E  L+Q T++   L   +      +   Q   R    M  D  +  + ++ERI
Sbjct: 81  IHLTRSLEGALVQTTKKTPSLTKRISDTIFPNPMLQEAIR----MGFDFKDVKKIMEERI 136

Query: 209 VLVSNRAEDAESVCCD--SCDDNNREQEL-----------KEERRKLA----CKRCNSRN 251
               +  +  E +  D  S   +  E EL           +E  R+L     CK C  R+
Sbjct: 137 QTSGSNYKTLEVLVADLVSAQKDTTENELNQTSLQREISPEEPLRRLQEEKLCKICMDRH 196

Query: 252 SCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS 291
             V+ +PC HL +CKQC   +  CP+C++       VF S
Sbjct: 197 IAVVFIPCGHLVTCKQCAEAVDRCPMCSAVIDFKQRVFMS 236

Protects against apoptosis mediated by BAX.

Homo sapiens (taxid: 9606)

>sp|Q9R0I6|XIAP_RAT E3 ubiquitin-protein ligase XIAP OS=Rattus norvegicus GN=Xiap PE=2 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 228 DNNREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASME 287
           D + E++L+  + +  CK C  RN  ++ +PC HL +CKQC   +  CP+C +      +
Sbjct: 433 DISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCCTVITFKQK 492

Query: 288 VF 289
           +F
Sbjct: 493 IF 494

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, copper homeostasis, mitogenic kinase signaling, cell proliferation, as well as cell invasion and metastasis. Acts as a direct caspase inhibitor. Directly bind to the active site pocket of CASP3 and CASP7 and obstructs substrate entry. Inactivates CASP9 by keeping it in a monomeric, inactive state. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and the target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, CASP3, CASP7, CASP8, CASP9, MAP3K2/MEKK2, DIABLO/SMAC, AIFM1, CCS and BIRC5/survivin. Ubiquitinion of CCS leads to enhancement of its chaperone activity toward its physiologic target, SOD1, rather than proteasomal degradation. Ubiquitinion of MAP3K2/MEKK2 and AIFM1 does not lead to proteasomal degradation. Plays a role in copper homeostasis by ubiquitinationg COMMD1 and promoting its proteasomal degradation. Can also function as E3 ubiquitin-protein ligase of the NEDD8 conjugation pathway, targeting effector caspases for neddylation and inactivation. Regulates the BMP signaling pathway and the SMAD and MAP3K7/TAK1 dependent pathways leading to NF-kappa-B and JNK activation. Acts as an important regulator of innate immune signaling via regulation of Nodlike receptors (NLRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8. Acts as a positive regulator of Wnt signaling and ubiquitinates TLE1, TLE2, TLE3, TLE4 and AES. Ubiquitination of TLE3 results in inhibition of its interaction with TCF7L2/TCF4 thereby allowing efficient recruitment and binding of the transcriptional coactivator beta-catenin to TCF7L2/TCF4 that is required to initiate a Wnt-specific transcriptional program.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q13489|BIRC3_HUMAN Baculoviral IAP repeat-containing protein 3 OS=Homo sapiens GN=BIRC3 PE=1 SV=2

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 36/74 (48%)

Query: 216 EDAESVCCDSCDDNNREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSC 275
           +D + +  +   D   E++L+  + +  CK C  +   ++ +PC HL  CK C   L  C
Sbjct: 529 QDIKYIPTEDVSDLPVEEQLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKC 588

Query: 276 PVCNSAKVASMEVF 289
           P+C S    ++  F
Sbjct: 589 PICRSTIKGTVRTF 602

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, mitogenic kinase signaling and cell proliferation, as well as cell invasion and metastasis. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and regulates both canonical and non-canonical NF-kappa-B signaling by acting in opposite directions: acts as a positive regulator of the canonical pathway and suppresses constitutive activation of non-canonical NF-kappa-B signaling. The target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, RIPK2, RIPK3, RIPK4, CASP3, CASP7, CASP8, TRAF1, and BCL10. Acts as an important regulator of innate immune signaling via regulation of Toll-like receptors (TLRs), Nodlike receptors (NLRs) and RIG-I like receptors (RLRs), collectively referred to as pattern recognition receptors (PRRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A1E2V0|BIRC3_CANFA Baculoviral IAP repeat-containing protein 3 OS=Canis familiaris GN=BIRC3 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/104 (21%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 186 LARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCDSCDDNNREQELKEERRKLACK 245
           L + + A+ +   N+L+++   +       +D + +  +   D   E++L+  + +  CK
Sbjct: 500 LVKGSSAVTI-FKNSLQEIDPMLYKRFFVQQDRKYIPTEDISDLPVEEQLRRLQEERTCK 558

Query: 246 RCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVF 289
            C  +   ++ +PC HL  C+ C   L  CP+C      ++  F
Sbjct: 559 VCMDKEVSIVFIPCGHLVVCRDCAPSLRKCPICRGTVRGTVRTF 602

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, mitogenic kinase signaling and cell proliferation, as well as cell invasion and metastasis. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and regulates both canonical and non-canonical NF-kappa-B signaling by acting in opposite directions: acts as a positive regulator of the canonical pathway and suppresses constitutive activation of non-canonical NF-kappa-B signaling. The target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, RIPK2, RIPK3, RIPK4, CASP3, CASP7, CASP8, TRAF1, and BCL10. Acts as an important regulator of innate immune signaling via regulation of Toll-like receptors (TLRs), Nodlike receptors (NLRs) and RIG-I like receptors (RLRs), collectively referred to as pattern recognition receptors (PRRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8.

Canis familiaris (taxid: 9615)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A9ULZ2|BIR7B_XENLA Baculoviral IAP repeat-containing protein 7-B OS=Xenopus laevis GN=birc7-b PE=2 SV=2

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 233 QELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVF 289
           Q LKEER    CK C  ++  +L +PC HL  C +C   L  CP+C +A   S+  F
Sbjct: 290 QRLKEER---MCKVCMDKDVSMLFVPCGHLVVCTECAPNLRHCPICRAAIRGSVRAF 343

Weak apoptotic suppressor. Has E3 ubiquitin-protein ligase activity. Weak inhibitor of caspase activity.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
224083097	268	predicted protein [Populus trichocarpa]	0.907	0.992	0.550	1e-75
255539012	273	ATP binding protein, putative [Ricinus c	0.911	0.978	0.563	4e-73
317106595	276	JHL20J20.10 [Jatropha curcas]	0.931	0.989	0.537	4e-66
147787644	681	hypothetical protein VITISV_027810 [Viti	0.931	0.400	0.486	9e-59
225457903	286	PREDICTED: uncharacterized protein LOC10	0.931	0.954	0.49	1e-58
225428035	286	PREDICTED: uncharacterized protein LOC10	0.907	0.930	0.409	9e-49
224065759	257	predicted protein [Populus trichocarpa]	0.723	0.824	0.486	3e-46
297744606	216	unnamed protein product [Vitis vinifera]	0.617	0.837	0.5	7e-44
118482189	271	unknown [Populus trichocarpa]	0.709	0.767	0.467	4e-43
224078329	255	predicted protein [Populus trichocarpa]	0.709	0.815	0.467	6e-43

>gi|224083097|ref|XP_002306946.1| predicted protein [Populus trichocarpa] gi|222856395|gb|EEE93942.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 159/289 (55%), Positives = 202/289 (69%), Gaps = 23/289 (7%)

Query: 1   MAVQAQLYPENLGNLPMCGLQMQQDWAVINPVPVSSAAINADLRFSFQDTRHHHHFLFAH 60
           MAVQAQLYPE LG LPMCG+Q   D    NPV    + +   L F FQ+T+    FL  H
Sbjct: 1   MAVQAQLYPERLGLLPMCGMQ---DCLFNNPV----SGLEPGLGFVFQETQQQSLFLEHH 53

Query: 61  PDHSQQNPHQNLVFDSNSKASSSSSSTRAGNIFSSMAALPQSLHTQLELQRQELECILHI 120
                    QN  FD N  A+SS+  TR  ++  SM+ L Q L  QL++QR+E++C+L  
Sbjct: 54  SS-------QNFGFDCNIGAASST--TRDSSL--SMS-LSQYLDVQLDMQRREVDCMLQF 101

Query: 121 QSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMES 180
           Q+ RLR+ L +QRKQQLG  LKSVESK  +L+RQKEEDL QAT++ MELE CLRK E+ES
Sbjct: 102 QAGRLRTILQQQRKQQLGITLKSVESKVSSLIRQKEEDLAQATKKTMELEVCLRKVELES 161

Query: 181 ESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCDSCDDNNREQELKEERR 240
           E  QR+AR  EAMV+DLS +LEQ++ R+V+ SN  +DAES CC +CD   REQ+ +E ++
Sbjct: 162 ERCQRVAREKEAMVVDLSKSLEQLRGRLVMASNEVQDAESFCCGTCD---REQD-QESQK 217

Query: 241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVF 289
           ++ CK CNSR+SC++ LPCRHLCSCK C+AFL SCPVC S K ASMEVF
Sbjct: 218 RMVCKGCNSRSSCIIFLPCRHLCSCKSCDAFLGSCPVCKSVKEASMEVF 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539012|ref|XP_002510571.1| ATP binding protein, putative [Ricinus communis] gi|223551272|gb|EEF52758.1| ATP binding protein, putative [Ricinus communis]

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 165/293 (56%), Positives = 201/293 (68%), Gaps = 26/293 (8%)

Query: 1   MAVQAQ-LYPENLGNLPMCGLQMQQDWAVINPVPVSSAAINADLRFSFQDTRHHHHFLFA 59
           MAVQAQ +YPE+LG +PM  LQ   DWAV NP         AD  F  Q+++  +     
Sbjct: 1   MAVQAQFMYPESLG-IPMFSLQ---DWAVSNPA-------EADFSFGLQESQQQNL---- 45

Query: 60  HPDHSQQNPHQNLVFDSNSKASSSSSSTRAGNIFSSMAALPQSLHTQ-LELQRQELECIL 118
                QQ   QN  FD N + +  +S   + +   S  AL QSL+   LE+QRQE++CIL
Sbjct: 46  ---FLQQQSSQNFGFDCN-RGAWFASPPPSSSTCDSFLALSQSLYANYLEMQRQEVDCIL 101

Query: 119 HIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEM 178
             Q ERLRSAL EQRKQQ   +LKSV+SKA++LMRQKEEDL +A ++ MELEACL +A+M
Sbjct: 102 QFQHERLRSALQEQRKQQFAVLLKSVKSKAISLMRQKEEDLAKAAKKKMELEACLERAQM 161

Query: 179 ESESWQRLARANEAMVMDLSNTLEQVKERIVLVSN-RAEDAESVCCDSCDDNNREQELKE 237
           E+ESWQRLAR NEAMV+DLSNTLEQVKER+VL SN R +D ES CC SC    +EQE ++
Sbjct: 162 ETESWQRLARENEAMVIDLSNTLEQVKERMVLSSNSRGQDTESSCCGSC---KKEQEAED 218

Query: 238 -ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVF 289
             R+++ CK C+SR S VL LPCRHLCSCK CEAF  SCPVC SAK  SMEVF
Sbjct: 219 IPRKRMVCKGCSSRASSVLFLPCRHLCSCKFCEAFFSSCPVCESAKEGSMEVF 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106595|dbj|BAJ53103.1| JHL20J20.10 [Jatropha curcas]

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 156/290 (53%), Positives = 191/290 (65%), Gaps = 17/290 (5%)

Query: 1   MAVQAQLYPENLGNLPMCGLQMQQDWAVINPVPVSSAAINADLRFSFQ-DTRHHHHFLFA 59
           MAVQAQLYPE    LP+    +Q  W V NPV              F+ D          
Sbjct: 1   MAVQAQLYPETFC-LPL-SSGLQDYWMVNNPVS------------GFEPDCCFSFQQSQQ 46

Query: 60  HPDHSQQNPHQNLVFDSNSKASSSSSSTRAGNIFSSMAALPQSLHTQLELQRQELECILH 119
                QQ   QN  FD+N    +  SS+ + +   S  ++       LE+QR+E++CIL 
Sbjct: 47  QNLFLQQQSSQNFGFDNNRATGTGVSSSSSQSTCDSFISMALDAR-HLEMQRREVDCILQ 105

Query: 120 IQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEME 179
           +Q+ERLRS+L E RKQQLG +LKSVESKA++LMRQKEEDL QAT++ MELEACLRKA+ E
Sbjct: 106 VQNERLRSSLQELRKQQLGVLLKSVESKAISLMRQKEEDLAQATKKTMELEACLRKAQAE 165

Query: 180 SESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCDSCDDNNREQELKEER 239
            E+WQR AR NEAMV+DLSNTLEQV+ER+VL +N  +D ES CC SC D  +E+E ++  
Sbjct: 166 RETWQRQARENEAMVIDLSNTLEQVRERLVLENNIGQDTESFCCGSC-DREKEEEEEDSS 224

Query: 240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVF 289
           +K+ACK CNSR SCVL LPCRHLCSCK CEAF  SCPVC S K  SMEVF
Sbjct: 225 KKMACKGCNSRASCVLFLPCRHLCSCKFCEAFFSSCPVCQSVKEGSMEVF 274

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787644|emb|CAN63052.1| hypothetical protein VITISV_027810 [Vitis vinifera]

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 146/300 (48%), Positives = 185/300 (61%), Gaps = 27/300 (9%)

Query: 1   MAVQAQLYPENLGNLPMCGLQMQQDWAVINPVPVSSAAINADL-RFSFQDTRHHHHFLFA 59
           MAV AQ Y E++G L MCG+Q   DW V    PVSS+ ++ D   F+ Q     HH    
Sbjct: 396 MAVDAQYYSESMG-LAMCGVQ---DWWV---NPVSSSGLDVDASNFNPQQLPQVHHL--- 445

Query: 60  HPDHSQQNPHQNLVFDSNSKASSSSSSTRAGNIFSSMAALPQSLHTQLELQRQELECILH 119
           H  +S Q+    L  D N+  +   SS+ +  +     A  QSL  QLE QR E++ +LH
Sbjct: 446 HNHYSIQD----LCVDDNTSPNPFPSSSSSDKLLP--MAFSQSLADQLETQRLEIDWLLH 499

Query: 120 IQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEME 179
            Q ERL+ AL EQRKQQLG++L  +ESK + LMRQKEEDL +A ++ MELE  LR+ E+E
Sbjct: 500 FQLERLKFALQEQRKQQLGSLLNRLESKTITLMRQKEEDLARAXKKMMELEDWLRRREVE 559

Query: 180 SESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCDSC----------DDN 229
           S+ WQR+A  NEAMV  L+N LEQV+E  +L+SN AEDAES                D  
Sbjct: 560 SQGWQRVATENEAMVKYLNNMLEQVRETHLLLSNGAEDAESYGGGPIDRREDEGRGRDRG 619

Query: 230 NREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVF 289
              +E+K++ +K+ACKRCNSR SC L  PCRHLCSCK CE  L  CPVC S K ASMEVF
Sbjct: 620 EGGEEVKDQCKKMACKRCNSRTSCFLFFPCRHLCSCKSCEPLLGCCPVCKSVKEASMEVF 679

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457903|ref|XP_002279403.1| PREDICTED: uncharacterized protein LOC100252373 [Vitis vinifera]

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 147/300 (49%), Positives = 186/300 (62%), Gaps = 27/300 (9%)

Query: 1   MAVQAQLYPENLGNLPMCGLQMQQDWAVINPVPVSSAAINADL-RFSFQDTRHHHHFLFA 59
           MAV AQ Y E++G L MCG+Q   DW V    PVSS+ ++ D   F+ Q     HH    
Sbjct: 1   MAVDAQYYSESMG-LAMCGVQ---DWWV---NPVSSSGLDVDASNFNPQQLPQVHHL--- 50

Query: 60  HPDHSQQNPHQNLVFDSNSKASSSSSSTRAGNIFSSMAALPQSLHTQLELQRQELECILH 119
           H  +S Q+    L  D N+  +   SS+ +  +     A  QSL  QLE QR E++ +LH
Sbjct: 51  HNHYSIQD----LCVDDNTSPNPFPSSSSSDKLLP--MAFSQSLADQLETQRLEIDWLLH 104

Query: 120 IQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEME 179
            Q ERL+ AL EQRKQQLG++L  +ESK + LMRQKEEDL +AT++ MELE  LR+ E+E
Sbjct: 105 FQLERLKFALQEQRKQQLGSLLNRLESKTITLMRQKEEDLARATKKMMELEDWLRRREVE 164

Query: 180 SESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCDSC----------DDN 229
           S+ WQR+A  NEAMV  L+N LEQV+E  +L+SN AEDAES                D  
Sbjct: 165 SQGWQRVATENEAMVKYLNNMLEQVRETHLLLSNGAEDAESYGGGPIDRREDEGRGRDRG 224

Query: 230 NREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVF 289
              +E+K++ +K+ACKRCNSR SC L  PCRHLCSCK CE  L  CPVC S K ASMEVF
Sbjct: 225 EGGEEVKDQCKKMACKRCNSRTSCFLFFPCRHLCSCKSCEPLLGCCPVCKSVKEASMEVF 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428035|ref|XP_002277843.1| PREDICTED: uncharacterized protein LOC100262284 [Vitis vinifera]

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 125/305 (40%), Positives = 171/305 (56%), Gaps = 39/305 (12%)

Query: 1   MAVQAQLYPENLGNLPMCGLQMQQDWAVINPVPVSSAAINADLRFSFQDTRHHHHFLFAH 60
           MA+QAQLY ENLG      L   Q+W     V  + +  N          ++        
Sbjct: 1   MAIQAQLYSENLG----FSLGGSQEWVDNGCVGFNGSCFN----LQQHQQQYMQQLQSQQ 52

Query: 61  PDHSQQNPHQNLVFDSNSKASSSSSSTRAGNIFSSMAALPQSLHTQLELQRQELECILHI 120
                Q  +QN   D++   S+  +S   G+          SL +Q + QRQE++  + +
Sbjct: 53  EQIQSQRNYQNFFLDNSLMGSTLKNSPNYGS--------SHSLASQFDNQRQEIDQFITL 104

Query: 121 QSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMES 180
           QSERLR  L EQRKQQL A+++ VESKA+ L+RQK+E++ +AT RAMELE  LRK EME+
Sbjct: 105 QSERLRLVLQEQRKQQLAALMRKVESKALALLRQKDEEIAKATNRAMELEDFLRKLEMEN 164

Query: 181 ESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCDSCDDN--NREQ----- 233
           ++WQR+A+ NEA VM L++T+EQ+KE+   +   +EDAES     CDDN  NRE+     
Sbjct: 165 QAWQRVAKENEAKVMSLNHTIEQIKEKACGIF--SEDAESC----CDDNMGNREEGTGEN 218

Query: 234 ----------ELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKV 283
                       ++    + C+ CNSRNSCVLLLPCRH CSCK CE F   CPVC + K 
Sbjct: 219 RRGGGGEGEEHEEDSTSNMVCRGCNSRNSCVLLLPCRHFCSCKACEGFFDHCPVCQTEKK 278

Query: 284 ASMEV 288
             +E 
Sbjct: 279 GWIEA 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065759|ref|XP_002301957.1| predicted protein [Populus trichocarpa] gi|222843683|gb|EEE81230.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/251 (48%), Positives = 152/251 (60%), Gaps = 39/251 (15%)

Query: 1   MAVQAQLYPENLGNLPMCGLQMQQDWAVINPVPVSSAAINADLRFSFQDTRHHHHFLFAH 60
           MAVQA LYPE LG LPM G   QQD  + + V    +  +AD  F+FQ+ +  + FL   
Sbjct: 1   MAVQAHLYPERLGLLPMGG---QQDCILNDHV----SEFDADWGFAFQEPQQQNLFL--- 50

Query: 61  PDHSQQNPHQNLVFDSNSKASSSSSSTRAGNIFSSMAALPQSLHTQLELQRQELECILHI 120
                QN  QN  FD N  ASSSSSS       S    L Q L  QL++QR+E++C+L +
Sbjct: 51  ----DQNNSQNFCFDCNIGASSSSSSYSTTCDSSFSMFLSQCLDVQLDMQRREVDCMLQL 106

Query: 121 QS-------------------------ERLRSALLEQRKQQLGAVLKSVESKAMNLMRQK 155
           Q+                         ERLR AL +QRKQQLG +LKSVESK  +L+RQ 
Sbjct: 107 QALVLVAFILCFGLQKSRSISLKQMQAERLRFALQQQRKQQLGIILKSVESKVSSLIRQN 166

Query: 156 EEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRA 215
           EEDL Q T++ MELE CLRK E ESE WQRLAR  EA+V+DLSNTLE+++ER+V  SN+ 
Sbjct: 167 EEDLAQTTKKTMELEVCLRKVEQESEQWQRLAREKEAVVVDLSNTLERIRERLVTPSNKV 226

Query: 216 EDAESVCCDSC 226
           +DAES CC SC
Sbjct: 227 QDAESFCCGSC 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744606|emb|CBI37868.3| unnamed protein product [Vitis vinifera]

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 102/204 (50%), Positives = 136/204 (66%), Gaps = 23/204 (11%)

Query: 102 SLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQ 161
           SL +Q + QRQE++  + +QSERLR  L EQRKQQL A+++ VESKA+ L+RQK+E++ +
Sbjct: 16  SLASQFDNQRQEIDQFITLQSERLRLVLQEQRKQQLAALMRKVESKALALLRQKDEEIAK 75

Query: 162 ATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESV 221
           AT RAMELE  LRK EME+++WQR+A+ NEA VM L++T+EQ+KE+   +   +EDAES 
Sbjct: 76  ATNRAMELEDFLRKLEMENQAWQRVAKENEAKVMSLNHTIEQIKEKACGIF--SEDAESC 133

Query: 222 CCDSCDDN--NREQ---------------ELKEERRKLACKRCNSRNSCVLLLPCRHLCS 264
               CDDN  NRE+                 ++    + C+ CNSRNSCVLLLPCRH CS
Sbjct: 134 ----CDDNMGNREEGTGENRRGGGGEGEEHEEDSTSNMVCRGCNSRNSCVLLLPCRHFCS 189

Query: 265 CKQCEAFLVSCPVCNSAKVASMEV 288
           CK CE F   CPVC + K   +E 
Sbjct: 190 CKACEGFFDHCPVCQTEKKGWIEA 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482189|gb|ABK93023.1| unknown [Populus trichocarpa]

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 107/229 (46%), Positives = 151/229 (65%), Gaps = 21/229 (9%)

Query: 69  HQNLVFDSNSKASSSSSSTRAGNIFSSMAALPQSLHTQLELQRQELECILHIQSERLRSA 128
           +QNL FDS + AS+S ++        +MA+         E QRQE++  + +Q+ERLR  
Sbjct: 54  NQNLFFDS-TLASASKNNNSDHLSMGTMASYD-------EKQRQEIDHYIRLQNERLRLV 105

Query: 129 LLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLAR 188
           L EQ++QQL  +LK VESKA+ +++QK+E++ QA +R +ELE  L+K E E+++WQR+A 
Sbjct: 106 LQEQKRQQLSLLLKKVESKALPILKQKDEEIAQAAKRTVELEDFLKKLEFENQTWQRMAL 165

Query: 189 ANEAMVMDLSNTLEQVKERI-VLVSNRAEDAESVCCDSCDDNNREQEL-----KEERRK- 241
            NEA V+ L+NT+EQ++E      +N AEDAES C     D +RE+E       +  RK 
Sbjct: 166 ENEAKVISLNNTIEQLRENASSCFNNGAEDAESCC-----DVSREEEWFLDDADDTARKM 220

Query: 242 -LACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVF 289
            + CKRCNSRNSC+L LPCRHLCSCK C+A L +CPVC + K AS+E  
Sbjct: 221 VMVCKRCNSRNSCILFLPCRHLCSCKACDACLDACPVCQTPKKASIEAL 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078329|ref|XP_002305522.1| predicted protein [Populus trichocarpa] gi|222848486|gb|EEE86033.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/229 (46%), Positives = 151/229 (65%), Gaps = 21/229 (9%)

Query: 69  HQNLVFDSNSKASSSSSSTRAGNIFSSMAALPQSLHTQLELQRQELECILHIQSERLRSA 128
           +QNL FDS + AS+S ++        +MA+         E QRQE++  + +Q+ERLR  
Sbjct: 38  NQNLFFDS-TLASASKNNNSDHLSMGTMASYD-------EKQRQEIDHYIRLQNERLRLV 89

Query: 129 LLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLAR 188
           L EQ++QQL  +LK VESKA+ +++QK+E++ QA +R +ELE  L+K E E+++WQR+A 
Sbjct: 90  LQEQKRQQLSLLLKKVESKALPILKQKDEEIAQAAKRTVELEDFLKKLEFENQTWQRMAL 149

Query: 189 ANEAMVMDLSNTLEQVKERI-VLVSNRAEDAESVCCDSCDDNNREQEL-----KEERRK- 241
            NEA V+ L+NT+EQ++E      +N AEDAES C     D +RE+E       +  RK 
Sbjct: 150 ENEAKVISLNNTIEQLRENASSCFNNGAEDAESCC-----DVSREEEWFLDDADDTARKM 204

Query: 242 -LACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVF 289
            + CKRCNSRNSC+L LPCRHLCSCK C+A L +CPVC + K AS+E  
Sbjct: 205 VMVCKRCNSRNSCILFLPCRHLCSCKACDACLDACPVCQTPKKASIEAL 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2131571	265	AT4G35070 "AT4G35070" [Arabido	0.627	0.694	0.439	1.7e-36
TAIR|locus:2825812	325	SBP1 "S-ribonuclease binding p	0.617	0.556	0.353	1.9e-26
TAIR|locus:2153227	294	BRG1 "BOI-related gene 1" [Ara	0.645	0.642	0.310	9e-22
TAIR|locus:2035564	312	AT1G32740 "AT1G32740" [Arabido	0.607	0.570	0.324	3.9e-21
TAIR|locus:2019983	339	AT1G10650 [Arabidopsis thalian	0.682	0.589	0.264	8e-21
TAIR|locus:2171042	300	AT5G47050 [Arabidopsis thalian	0.627	0.613	0.324	1e-20
TAIR|locus:2133990	304	RING [Arabidopsis thaliana (ta	0.655	0.631	0.282	3.5e-20
TAIR|locus:2089225	335	BRG3 "BOI-related gene 3" [Ara	0.645	0.564	0.285	1.5e-19
TAIR|locus:2129336	314	AT4G17680 [Arabidopsis thalian	0.655	0.611	0.284	5.8e-18
TAIR|locus:2036596	340	AT1G60610 [Arabidopsis thalian	0.750	0.647	0.257	1.7e-17

TAIR|locus:2131571 AT4G35070 "AT4G35070" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 83/189 (43%), Positives = 115/189 (60%)

Query:   103 LHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQA 162
             L  Q+E Q+QE++  + IQ+ERLR  L EQRK+++  +L+ +ESKA+ LM QKEE++ +A
Sbjct:    74 LAAQMEKQKQEIDQFIKIQNERLRYVLQEQRKREMEMILRKMESKALLLMSQKEEEMSKA 133

Query:   163 TRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAE---DAE 219
               + MELE  LRK EME+++WQR+AR NEA+V  L+ TLEQV+ER     +  E   + E
Sbjct:   134 LNKNMELEDLLRKMEMENQTWQRMARENEAIVQTLNTTLEQVRERAATCYDAGEAEVEDE 193

Query:   220 SVCCDSCDDNNXXXXXXXXXXXXACKRCNSRN-SCVLLLPCRHLCSCKQCEAFLVSCPVC 278
                C    D N             C  C S   + VL LPCRHLC C  CE  L+ CP+C
Sbjct:   194 GSFCGGEGDGNSLPAKKMKMSSCCCN-CGSNGVTRVLFLPCRHLCCCMDCEEGLLLCPIC 252

Query:   279 NSAKVASME 287
             N+ K + +E
Sbjct:   253 NTPKKSRIE 261

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2825812 SBP1 "S-ribonuclease binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 65/184 (35%), Positives = 102/184 (55%)

Query:   108 ELQRQE--LECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRR 165
             ELQRQ+  ++  L IQ ++LR A+L++ K+     +  +E K +  +R+K+E+L +  R+
Sbjct:   142 ELQRQDADIDRFLKIQGDQLRHAILDKIKRGQQKTVSLMEEKVVQKLREKDEELERINRK 201

Query:   166 AMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCDS 225
               ELE  + +  ME+E+WQ+ A+ NE M+  L+  L++ + R         D+E     S
Sbjct:   202 NKELEVRMEQLTMEAEAWQQRAKYNENMIAALNYNLDRAQGRPRDSIEGCGDSEVDDTAS 261

Query:   226 CDDNNXXXXXXXXXXXXACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVAS 285
             C  N              C+ C  R  C+LLLPC H+C CK+CE  L SCP+C S+K   
Sbjct:   262 CF-NGRDNSNNNTKTMMMCRFCGVREMCMLLLPCNHMCLCKECERKLSSCPLCQSSKFLG 320

Query:   286 MEVF 289
             MEV+
Sbjct:   321 MEVY 324

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2153227 BRG1 "BOI-related gene 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 64/206 (31%), Positives = 107/206 (51%)

Query:    93 FSSMAALPQSLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLM 152
             FS  + +   L +Q++ Q  E++  +  Q+E LR  L  +++ Q   +  +V++  +  +
Sbjct:    92 FSPASLIDAELVSQIQQQNSEIDRFVAQQTETLRIELEARQRTQTRMLASAVQNAILKKL 151

Query:   153 RQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERI---- 208
             + K+E++I+  +    L+  ++   +E++ W+ LA+ NEA   +L + LEQV  ++    
Sbjct:   152 KAKDEEIIRMGKLNWVLQERVKNLYVENQIWRDLAQTNEATANNLRSNLEQVLAQVDDLD 211

Query:   209 ----VLVSNRAEDAESVCCDSCDDNNXXXXXXXXXXXXACKRCNSRNSCVLLLPCRHLCS 264
                  LV   A+DAES  C SCD  +             CKRC    + VL+LPCRHLC 
Sbjct:   212 AFRRPLVEE-ADDAES-SCGSCDGGDVTAVVNG-----GCKRCGELTASVLVLPCRHLCL 264

Query:   265 CKQC--EAFLVSCPVCNSAKVASMEV 288
             C  C   A L +CPVC+    AS+ V
Sbjct:   265 CTVCGSSALLRTCPVCDMVMTASVHV 290

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0043067 "regulation of programmed cell death" evidence=IMP

TAIR|locus:2035564 AT1G32740 "AT1G32740" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 60/185 (32%), Positives = 94/185 (50%)

Query:   110 QRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMEL 169
             Q +EL+  LH Q+E LR  L E+RK    A+L +VE   +  +R+KE ++ +ATRR  EL
Sbjct:   124 QSEELDEFLHAQAEELRRTLAEKRKMHYKALLGAVEESLVRKLREKEVEIERATRRHNEL 183

Query:   170 EACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDA----ESVCCDS 225
              A   +   E + WQ  A+A+E     L + L+Q   +       A+D+    E + C +
Sbjct:   184 VARDSQLRAEVQVWQERAKAHEDAAASLQSQLQQAVNQCAGGCVSAQDSRAAEEGLLCTT 243

Query:   226 C---DDNNXXXXXXXXXXXXACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAK 282
                 DD               CK C  R + V++LPCRHL  C  C+   ++CP+C + +
Sbjct:   244 ISGVDDAESVYVDPERVKRPNCKACREREATVVVLPCRHLSICPGCDRTALACPLCLTLR 303

Query:   283 VASME 287
              +S+E
Sbjct:   304 NSSVE 308

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2019983 AT1G10650 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 56/212 (26%), Positives = 106/212 (50%)

Query:    89 AGNIFSSMAALPQSLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKA 148
             A  IF S   L  SL   L  Q+ E +  + IQ+ ++   + + +++ + + L ++E   
Sbjct:   131 ASPIFQS---LDDSLRIDLHRQKDEFDQFIKIQAAQMAKGVRDMKQRHIASFLTTLEKGV 187

Query:   149 MNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKER- 207
                +++K+ ++    ++  EL   +++  ME+++W   A+ NE++V  L   L+Q     
Sbjct:   188 SKKLQEKDHEINDMNKKNKELVERIKQVAMEAQNWHYRAKYNESVVNVLKANLQQAMSHN 247

Query:   208 --IVLVSNRAEDA--ESVCCDSC----DDNNXXXXXXXXXXXXACKRCNSRNSCVLLLPC 259
               ++  +++ ++   +S   D+     D NN             CK CN +   VL++PC
Sbjct:   248 NSVIAAADQGKEGFGDSEIDDAASSYIDPNNNNNNNMGIHQRMRCKMCNVKEVSVLIVPC 307

Query:   260 RHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS 291
             RHL  CK+C+ F   CPVC S K + ++VF S
Sbjct:   308 RHLSLCKECDVFTKICPVCKSLKSSCVQVFFS 339

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2171042 AT5G47050 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 63/194 (32%), Positives = 95/194 (48%)

Query:   106 QLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRR 165
             +++ Q  EL   L IQ E+L+  L E  ++    +L++ E      +R+KE ++ +ATRR
Sbjct:   109 EIKSQTDELNRFLQIQGEQLKRMLAENSERNYRELLRTTEESVRRRLREKEAEIEKATRR 168

Query:   166 AMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQ---VKER---IVLVSNRAEDAE 219
              +ELEA   + E E+ +WQ  A A EA    L   L Q   V      I  V  ++   +
Sbjct:   169 HVELEARATQIETEARAWQMRAAAREAEATSLQAQLHQAVVVAHGGGVITTVEPQSGSVD 228

Query:   220 SVCCDSCDDNNXXXXXXXXXXXXA--CKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPV 277
              V  D  +D                 C+ C  R++ VL LPCRHL  C +C+  +  CP+
Sbjct:   229 GV--DEAEDAESAYVDPDRVEMIGPGCRICRRRSATVLALPCRHLVMCTECDGSVRICPL 286

Query:   278 CNSAKVASMEVFGS 291
             C S K +S+EVF S
Sbjct:   287 CLSTKNSSVEVFYS 300

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2133990 RING [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 57/202 (28%), Positives = 104/202 (51%)

Query:    94 SSMAALPQSLHTQLELQRQ-ELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLM 152
             SS + +   L +Q++ Q+Q E++  +  Q+E+LR  +  +++ Q   +  +V++     +
Sbjct:   102 SSPSLINVELVSQIQNQQQSEIDRFVAQQTEKLRIEIEARQQTQTRMLASAVQNVIAKKL 161

Query:   153 RQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVS 212
             ++K++++++       L+  ++   +E++ W+ +A+ NEA    L   L+QV  ++    
Sbjct:   162 KEKDDEIVRIRNLNWVLQERVKSLYVENQIWRDIAQTNEANANTLRTNLDQVLAQLETFP 221

Query:   213 NRA----EDAESVCCDSCDDNNXXXXXXXXXXXXACKRCNSRNSCVLLLPCRHLCSCKQC 268
               +    +DAES C   C D               CKRC  R + VL+LPCRHLC C  C
Sbjct:   222 TASAVVEDDAESSCGSCCGDGGGEAVTAVGG---GCKRCGEREASVLVLPCRHLCLCTVC 278

Query:   269 --EAFLVSCPVCNSAKVASMEV 288
                A L +CPVC+    AS+ V
Sbjct:   279 GGSALLRTCPVCDMVMNASVHV 300

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:2000117 "negative regulation of cysteine-type endopeptidase activity" evidence=IDA

TAIR|locus:2089225 BRG3 "BOI-related gene 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 59/207 (28%), Positives = 104/207 (50%)

Query:    99 LPQSLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEED 158
             L Q L + ++    +++ ++    ER+R  + E+RK Q   ++++VE   M  +R K+++
Sbjct:   126 LGQDLSSNVQQHHFDIDRLISNHVERMRMEIEEKRKTQGRRIVEAVEQGLMKTLRAKDDE 185

Query:   159 LIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQV-----KERIVLVSN 213
             +    +  + LE  ++   +E++ W+ +A++NEA V  L + L+QV     + R      
Sbjct:   186 INHIGKLNLFLEEKVKSLCVENQIWRDVAQSNEATVNALRSNLQQVLAAVERNRWEEPPT 245

Query:   214 RAEDAESVCCDSCDDNNXXXXXXXXXXXXA------------CKRCNSRNSCVLLLPCRH 261
              A+DA+S CC S D+ +                         C+ C    + VLLLPCRH
Sbjct:   246 VADDAQS-CCGSNDEGDSEEERWKLAGEAQDTKKMCRVGMSMCRSCGKGEASVLLLPCRH 304

Query:   262 LCSCKQCEAFLVSCPVCNSAKVASMEV 288
             +C C  C + L +CP+C S K AS+ V
Sbjct:   305 MCLCSVCGSSLNTCPICKSPKTASLHV 331

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0043067 "regulation of programmed cell death" evidence=IMP

TAIR|locus:2129336 AT4G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 56/197 (28%), Positives = 97/197 (49%)

Query:    97 AALPQSLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKE 156
             ++LP  +  +++ QR EL+  +  Q E LR  L + R+++   +L + E      +R+KE
Sbjct:   116 SSLPGDVTGKIKRQRDELDRFIQTQGEELRRTLADNRERRYVELLCAAEEIVGRKLRKKE 175

Query:   157 EDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQ-VKERIVLVSNRA 215
              +L +ATRR  ELEA +     E+ +WQ  A   EA V  L   L+Q +  R+   + ++
Sbjct:   176 AELEKATRRHAELEARVAHIVEEARNWQLRAATREAEVSSLHAHLQQAIANRLDTAAKQS 235

Query:   216 EDAESVC-CDSCDDNNXXXXXXXXXXXX--ACKRCNSRNSCVLLLPCRHLCSCKQCEAFL 272
                E     +  +D                +C+ C  +++ V+ LPC+HL  C  C+   
Sbjct:   236 TFGEDGGDAEEAEDAESVYVDPERIELIGPSCRICRRKSATVMALPCQHLILCNGCDVGA 295

Query:   273 VS-CPVCNSAKVASMEV 288
             V  CP+C + K + +EV
Sbjct:   296 VRVCPICLAVKTSGVEV 312

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2036596 AT1G60610 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 62/241 (25%), Positives = 117/241 (48%)

Query:    68 PHQNLVFDXXXXXXXXXXXTRAGNIFSSMAAL--P--QSL--HTQLELQRQ--ELECILH 119
             P QNLV              R  ++ S+  ++  P  QSL  + +L+L RQ  EL+  + 
Sbjct:   100 PKQNLV--STGLRLSYDDDERNSSVTSANGSITTPVYQSLGDNIRLDLNRQNDELDQFIK 157

Query:   120 IQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEME 179
              +++++   + + +++ + + + ++E      +++K+ ++    ++  EL   +++  +E
Sbjct:   158 FRADQMAKGVRDIKQRHVTSFVTALEKDVSKKLQEKDHEIESMNKKNRELVDKIKQVAVE 217

Query:   180 SESWQRLARANEAMVMDLSNTLEQV----KERIVL---VSNRAEDAESVCCDSCDDN--- 229
             +++W   A+ NE++V  L   L+QV     +   +   V++  +  E       DD    
Sbjct:   218 AQNWHYKAKYNESVVNALKVNLQQVMSHGNDNNAVGGGVADHHQMKEGFGDSEIDDEAAS 277

Query:   230 -NXXXXXXXXXXXXACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEV 288
              N             CK CN +N  VLL+PCRHL  CK C+ F   CPVC S K +S++V
Sbjct:   278 YNYLNIPGMPSTGMRCKLCNVKNVSVLLVPCRHLSLCKDCDVFTGVCPVCQSLKTSSVQV 337

Query:   289 F 289
             F
Sbjct:   338 F 338

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-04
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	0.003

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVS---CPVCNS 280
               C  C  R   V+ LPC HLC C++C   L S   CP+C  
Sbjct: 1   EDDLCVICLERPRNVVFLPCGHLCLCEECAKRLRSKKKCPICRQ 44

Length = 49

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 16/138 (11%)

Query: 107 LELQRQELECILHIQSER--LRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATR 164
           LE Q ++ E    +++E   L  ALL  + ++L   L+ +E +   L    EE+L +   
Sbjct: 205 LERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRL----EEELEELQE 260

Query: 165 RAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCD 224
              E E  + + + E E  +      +  +++L   +E+++  I L+  R E+ E     
Sbjct: 261 ELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELE----- 315

Query: 225 SCDDNNREQELKEERRKL 242
                N  +EL+E   +L
Sbjct: 316 -----NELEELEERLEEL 328

Length = 1163

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 131 EQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARAN 190
           E+ +Q+L   ++ +E      MR+ +++L +    A+ELE  L++ E E++  ++ A   
Sbjct: 4   EREQQELEERMEQMEED----MRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADEL 59

Query: 191 EAMVMDL-SNTLEQVKERIVLVSNRAEDAESVCCDSCDDNNREQELKEERRKLACKR 246
           E     L        +ER  L +   E    V     +   +E E ++ +++L   +
Sbjct: 60  EEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQ 116

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	99.97
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	99.24
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.12
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	98.99
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	98.98
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	98.84
KOG1101	147	consensus Apoptosis inhibitor IAP1 and related BIR	98.53
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	98.29
PF00653	70	BIR: Inhibitor of Apoptosis domain; InterPro: IPR0	98.09
smart00238	71	BIR Baculoviral inhibition of apoptosis protein re	98.0
cd00022	69	BIR Baculoviral inhibition of apoptosis protein re	97.9
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.77
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	97.62
PF14634	44	zf-RING_5: zinc-RING finger domain	97.52
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	97.48
PHA02929	238	N1R/p28-like protein; Provisional	97.37
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.33
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.08
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	97.05
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	96.97
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	96.88
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.85
PHA02926	242	zinc finger-like protein; Provisional	96.83
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	96.78
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	96.77
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	96.52
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	96.21
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	96.03
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.98
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	95.94
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	95.91
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	95.71
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	95.47
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	95.12
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	94.86
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	94.82
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	94.66
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	93.66
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	93.44
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	92.2
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	91.84
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	91.28
KOG2113	394	consensus Predicted RNA binding protein, contains	91.22
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	90.63
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	89.67
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	89.54
KOG3039	303	consensus Uncharacterized conserved protein [Funct	88.37
PF04641	260	Rtf2: Rtf2 RING-finger	87.26
KOG3002	299	consensus Zn finger protein [General function pred	86.07
PF04710	416	Pellino: Pellino; InterPro: IPR006800 Pellino is i	84.59
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	84.31
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	82.11
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	81.85
PF12126	324	DUF3583: Protein of unknown function (DUF3583); In	81.5
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	80.97
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	80.11

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.7e-32  Score=245.68  Aligned_cols=189  Identities=33%  Similarity=0.595  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhhhhhhHHHHhhccccch
Q 022683          102 SLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESE  181 (293)
Q Consensus       102 ~l~~~l~~q~~EiD~~i~~q~erlr~~l~e~r~rh~r~ll~avE~~~~~~LrqK~eELa~Ag~~y~eleerLr~w~~E~~  181 (293)
                      ++++++++|..|||+|+..++++||..+.++++++++.++.++|..+.++||+|++||.++|.++.+|+++++...+|.+
T Consensus        15 ~~~~~~~~q~~~id~f~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~   94 (207)
T KOG1100|consen   15 DLASDIQRQSDEIDRFLKIQGEQLRRELEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQ   94 (207)
T ss_pred             cceeecccccchhhHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHH
Confidence            57778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHhhhhhhcCccCCcccccCCCCCCcc----hHHHHHhhhhccccccccccCcceEEe
Q 022683          182 SWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCDSCDDNN----REQELKEERRKLACKRCNSRNSCVLLL  257 (293)
Q Consensus       182 ~Wq~hAr~neac~~~L~~~L~qvk~~~~~~~~~~~DaeS~~~~s~~~~~----~e~e~~~~~~~~~C~iC~~~~~~vvll  257 (293)
                      .|+..|+.|++.+.+|+.+|+++...........+++.++++....+..    ...+.........|+.|.++++.|+|+
T Consensus        95 ~w~~~a~~ne~~~~~l~~nl~q~~~~~~~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~~~~~~~~~Cr~C~~~~~~Vlll  174 (207)
T KOG1100|consen   95 IWRDRAQTNEATVNSLRTNLDQVLAQCPASAPAEERGQKSCGDREADDGKSSYVDPSVDNFKRMRSCRKCGEREATVLLL  174 (207)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHhcccccCchhhhccccCccccccccccccchhhhhhhccccceecCcCCceEEee
Confidence            9999999999999999999999987641001123333332222111100    011112222223399999999999999


Q ss_pred             CCCCcccchhhHhcCCCCCcccccccceEEEcc
Q 022683          258 PCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFG  290 (293)
Q Consensus       258 PC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~l  290 (293)
                      ||+|+|+|..|...+..||+|+.+++++++||+
T Consensus       175 PCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~~  207 (207)
T KOG1100|consen  175 PCRHLCLCGICDESLRICPICRSPKTSSVEVNF  207 (207)
T ss_pred             cccceEecccccccCccCCCCcChhhceeeccC
Confidence            999999999999989999999999999999985

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.7e-12  Score=124.37  Aligned_cols=51  Identities=33%  Similarity=0.815  Sum_probs=47.4

Q ss_pred             hccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccceEEEcc
Q 022683          240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASMEVFG  290 (293)
Q Consensus       240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~v~l  290 (293)
                      ....|+||++..+++++|||||+|+|..|+..+    ..||+||.+|...++|+.
T Consensus       289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV  343 (349)
T ss_pred             CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence            367899999999999999999999999999987    579999999999999876

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.12  E-value=2.2e-11  Score=85.95  Aligned_cols=44  Identities=36%  Similarity=0.890  Sum_probs=39.3

Q ss_pred             ccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683          241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      +..|.+|+++.++++++||||.++|..|+..+    ..||+||++|+.
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            35799999999999999999999999999988    899999999975

...

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=4.1e-11  Score=112.43  Aligned_cols=51  Identities=24%  Similarity=0.679  Sum_probs=48.8

Q ss_pred             ccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEEEccc
Q 022683          241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS  291 (293)
Q Consensus       241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~lS  291 (293)
                      +.+|+||++.+++.+||||||.+.|..|...|..|||||..|...++||-+
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~  350 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV  350 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence            679999999999999999999999999999999999999999999999853

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.7e-11  Score=88.92  Aligned_cols=50  Identities=26%  Similarity=0.679  Sum_probs=45.9

Q ss_pred             cccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccceEEEccc
Q 022683          242 LACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVASMEVFGS  291 (293)
Q Consensus       242 ~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~~v~v~lS  291 (293)
                      ..|.||++++.+.+|.-|||.|+|.+|+..+     ..||+||++|.+.|+.|-|
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s   62 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS   62 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence            3699999999999999999999999999876     4799999999999998865

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=5.2e-10  Score=107.53  Aligned_cols=53  Identities=26%  Similarity=0.689  Sum_probs=49.3

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEEEccc
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS  291 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~lS  291 (293)
                      .-...|+||.+++-+++|+||||+|+|..|+..+..||+||..|...+++|.|
T Consensus       303 ~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~  355 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS  355 (355)
T ss_pred             CCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence            34568999999999999999999999999999999999999999999999865

>KOG1101 consensus Apoptosis inhibitor IAP1 and related BIR domain proteins [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.53  E-value=1e-08  Score=88.38  Aligned_cols=50  Identities=14%  Similarity=0.059  Sum_probs=43.5

Q ss_pred             hcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHH
Q 022683          153 RQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLE  202 (293)
Q Consensus       153 rqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~  202 (293)
                      ...++.||+|||||++-+         ..|..|+++|+||.+||||+|.|.|.+...++
T Consensus        32 ~c~p~~lA~AGFy~~g~~D~~~Cf~C~~~L~~We~~DDPW~EH~k~~p~C~F~~~~k~~   90 (147)
T KOG1101|consen   32 KCTPEQLAEAGFYYTGKQDCVKCFFCSGGLDDWEPGDDPWEEHAKWSPECEFLKLKKGR   90 (147)
T ss_pred             CcCHHHHHhCCceeeCCCCceECcccCcccccCCCCCCcHHHHHhhCCCCceeecccch
Confidence            689999999999999955         56999999999999999999999995544433

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=98.29  E-value=1.9e-07  Score=91.35  Aligned_cols=51  Identities=31%  Similarity=0.653  Sum_probs=46.9

Q ss_pred             cccccccccCcceEEeCCCCcccchhhHhcC------CCCCcccccccceEEEcccCC
Q 022683          242 LACKRCNSRNSCVLLLPCRHLCSCKQCEAFL------VSCPVCNSAKVASMEVFGSDF  293 (293)
Q Consensus       242 ~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l------~~CPvCr~~i~~~v~v~lS~~  293 (293)
                      .+||||-+++.+|-+-||||+ +|..|-...      ..||+||..|+++-.|.+.+|
T Consensus       370 eLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~viid~F  426 (563)
T KOG1785|consen  370 ELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVIIDPF  426 (563)
T ss_pred             HHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceeeecc
Confidence            589999999999999999999 999997754      699999999999999988777

>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=98.09  E-value=7.2e-07  Score=67.11  Aligned_cols=43  Identities=16%  Similarity=0.125  Sum_probs=35.8

Q ss_pred             hcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683          153 RQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM  195 (293)
Q Consensus       153 rqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~  195 (293)
                      ....++||+|||||++-+         ..|..|+.+|+||.+|.+++|.|.+
T Consensus        17 ~~~~~~LA~aGFyy~~~~d~v~C~~C~~~l~~w~~~Ddp~~~H~~~sp~C~f   68 (70)
T PF00653_consen   17 PVSPEKLARAGFYYTGTGDRVRCFYCGLELDNWEPNDDPWEEHKRHSPNCPF   68 (70)
T ss_dssp             SSHHHHHHHTTEEEESSTTEEEETTTTEEEES-STT--HHHHHHHHSTTBHH
T ss_pred             CCCHHHHHHCCCEEcCCCCEEEEeccCCEEeCCCCCCCHHHHHHHHCcCCee
Confidence            466899999999999963         4588999999999999999999998

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The baculovirus inhibitor of apoptosis protein repeat (BIR) is a domain of tandem repeats separated by a variable length linker that seems to confer cell death-preventing activity [, ]. The BIR domains characterise the Inhibitor of Apoptosis (IAP) family of proteins (MEROPS proteinase inhibitor family I32, clan IV) that suppress apoptosis by interacting with and inhibiting the enzymatic activity of both initiator and effector caspases (MEROPS peptidase family C14, IPR002398 from INTERPRO). Several distinct mammalian IAPs including XIAP, c-IAP1, c-IAP2, and ML-IAP, have been identified, and they all exhibit antiapoptotic activity in cell culture. The functional unit in each IAP protein is the baculoviral IAP repeat (BIR), which contains approximately 80 amino acids folded around a zinc atom. Most mammalian IAPs have more than one BIR domain, with the different BIR domains performing distinct functions. For example, in XIAP, the third BIR domain (BIR3) potently inhibits the catalytic activity of caspase-9, whereas the linker sequences immediately preceding the second BIR domain (BIR2) selectively targets caspase-3 or -7. The first-recognised members of family MEROPS inhibitor family I32 were viral proteins that inhibited the apoptosis of infected cells: Cp-IAP from Cydia pomonella granulosis virus (CpGV) [] and Op-IAP from Orgyia pseudotsugata multicapsid polyhedrosis virus(OpMNPV) []. The discovery of homologous proteins in mammals followed soon after with the recognition that mutations in the gene for neuronal apoptosis inhibitory protein (NIAP) underlie spinal muscular atrophy []. The inhibitors in family I32 all possess one or more 80-residue domains known as BIR (baculovirus inhibitor repeat) domains and have accordingly been termed 'BIR-containing' or 'BIRC' proteins as well as IAP proteins. The mechanism of inhibition of caspases by the IAP proteins is complex, and reactive site residues cannot yet be identified with any confidence. Despite the conservation of the BIR or IAP (inhibitor of apoptosis) domains throughout the family it seems clear that other parts of the molecules also make essential contributions to inhibitory activity. Homologs of most components in the mammalian apoptotic pathway have been identified in fruit flies. The Drosophila Apaf-1, known as Dapaf-1, HAC-1 or Dark, shares significant sequence similarity with its mammalian counterpart, and is critically important for the activation of the Drosophila initiator caspase Dronc. Dronc, in turn, cleaves and activates the effector caspase DrICE. The Drosophila IAP, DIAP1, binds to and in-activates both DrICE and Dronc through its BIR1 and BIR2 domains. During apoptosis, the anti-death function of DIAP1 is countered by at least four pro-apoptotic proteins, Reaper, Hid, Grim, and sickle, through direct physical interactions. These four proteins represent the functional homologs of the mammalian protein Smac, and they all share a conserved IAP-binding motif at their N termini. The three proteins Reaper, Hid, and Grim are collectively referred to as the RHG proteins [, ]. Both XIAP and DIAP1 contain a RING domain at their C termini, and can act as an E3 ubiquitin ligase. Indeed, both XIAP and DIAP1 have been shown to promote self-ubiquitination and degradation as well as to negatively regulate the target caspases. Nonetheless, important differences exist between XIAP and DIAP1. The primary function of XIAP is thought to inhibit the catalytic activities of caspases; to what extent the ubiquitinating activity of XIAP contributes to its function remains unclear. For DIAP1, however, the ubiquitinating activity appears to be essential for its function. Recently a Drosophila p53 protein has been identified that mediates apoptosis via a novel pathway involving the activation of the Reaper gene and subsequent inhibition of the inhibitors of apoptosis (IAPs). CIAP1, a major mammalian homologue of Drosophila IAPs, is irreversibly inhibited (cleaved) during p53-dependent apoptosis and this cleavage is mediated by a serine protease. Serine protease inhibitors that block CIAP1 cleavage inhibit p53-dependent apoptosis. Furthermore, activation of the p53 protein increases the transcription of the HTRA2 gene, which encodes a serine protease that interacts with CIAP1 and potentiates apoptosis. Therefore mammalian p53 protein activates apoptosis through a novel pathway functionally similar to that in Drosophila, which involves HTRA2 and subsequent inhibition of CIAP1 by cleavage [].; GO: 0005622 intracellular; PDB: 3HL5_B 3UW5_A 3CM7_A 1G3F_A 1G73_C 3G76_G 3CM2_C 2VSL_A 2OPZ_B 3CLX_A ....

>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat

Probab=98.00  E-value=1.1e-06  Score=65.85  Aligned_cols=49  Identities=12%  Similarity=0.052  Sum_probs=41.7

Q ss_pred             HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683          147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM  195 (293)
Q Consensus       147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~  195 (293)
                      .++.......++||+|||||++.+         ..|..|++.++||++|++++|.|.+
T Consensus        11 ~w~~~~~~~~~~LA~~Gfyy~~~~d~v~C~~C~~~l~~w~~~d~p~~~H~~~~p~C~f   68 (71)
T smart00238       11 NWPYNSKLTPEQLAEAGFYYTGVGDEVKCFFCGGELDNWEPGDDPWEEHKKWSPNCPF   68 (71)
T ss_pred             cCCCCccCCHHHHHHcCCeECCCCCEEEeCCCCCCcCCCCCCCCHHHHHhHhCcCCcC
Confidence            455445678999999999999843         3488999999999999999999987

Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.

>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins

Probab=97.90  E-value=2.1e-06  Score=63.88  Aligned_cols=48  Identities=15%  Similarity=0.066  Sum_probs=41.1

Q ss_pred             HHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683          148 AMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM  195 (293)
Q Consensus       148 ~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~  195 (293)
                      +...+....++||++||||++-.         ..|..|+..++||++|++++|.|.+
T Consensus        10 w~~~~~~~~~~La~~Gfyy~~~~d~v~C~~C~~~~~~w~~~d~p~~~H~~~~p~C~f   66 (69)
T cd00022          10 WPISLKVTPEKLAEAGFYYTGRGDEVKCFFCGLELKNWEPGDDPWEEHKRWSPNCPF   66 (69)
T ss_pred             CCCCccCCHHHHHHcCCeEcCCCCEEEeCCCCCCccCCCCCCCHHHHHhHhCcCCcC
Confidence            44446778899999999999853         4478999999999999999999988

In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00014  Score=76.01  Aligned_cols=147  Identities=27%  Similarity=0.347  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHhHhhcCHHHHHHHhhhhhhhHHHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhh-hh------c
Q 022683          140 VLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIV-LV------S  212 (293)
Q Consensus       140 ll~avE~~~~~~LrqK~eELa~Ag~~y~eleerLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~-~~------~  212 (293)
                      .+...+.....-++....-|+.-++.-++++..+..+..+-+--+............+...|+..+-... +.      .
T Consensus       535 ~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~  614 (698)
T KOG0978|consen  535 GLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLK  614 (698)
T ss_pred             HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555666666666666666555555555444444444444444444444444322100 00      0


Q ss_pred             CccCCc--ccccCCCCCCcchHHHHHhhhhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc-
Q 022683          213 NRAEDA--ESVCCDSCDDNNREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA-  284 (293)
Q Consensus       213 ~~~~Da--eS~~~~s~~~~~~e~e~~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~-  284 (293)
                      ......  .+. .++++ ....++.++-.....|.+|.+|..++++.-|+|+ +|..|....     .+||.|.+++.. 
T Consensus       615 ~kle~~k~~~~-~~s~d-~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFgan  691 (698)
T KOG0978|consen  615 RKLERLKKEES-GASAD-EVLAEELKEYKELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGAN  691 (698)
T ss_pred             HHHHHhccccc-ccccc-HHHHHHHHHHHhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence            000000  000 11111 1224566677788999999999999999999999 999998754     899999998754 


Q ss_pred             -eEEEc
Q 022683          285 -SMEVF  289 (293)
Q Consensus       285 -~v~v~  289 (293)
                       +.+||
T Consensus       692 Dv~~I~  697 (698)
T KOG0978|consen  692 DVHRIH  697 (698)
T ss_pred             cccccC
Confidence             44444

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=97.62  E-value=3.1e-05  Score=69.68  Aligned_cols=50  Identities=24%  Similarity=0.538  Sum_probs=40.3

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHhc--------------------CCCCCcccccccc--eEEEc
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF--------------------LVSCPVCNSAKVA--SMEVF  289 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~--------------------l~~CPvCr~~i~~--~v~v~  289 (293)
                      .+...|.||++...+.++.||+|+ .|..|-..                    ...||+||.+++.  .+.||
T Consensus        16 ~~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             CCccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            345789999999999999999997 89999853                    1479999999965  44444

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.52  E-value=5.4e-05  Score=52.05  Aligned_cols=36  Identities=31%  Similarity=0.821  Sum_probs=30.9

Q ss_pred             cccccccC---cceEEeCCCCcccchhhHhcCC----CCCcccc
Q 022683          244 CKRCNSRN---SCVLLLPCRHLCSCKQCEAFLV----SCPVCNS  280 (293)
Q Consensus       244 C~iC~~~~---~~vvllPC~Hl~lC~~C~~~l~----~CPvCr~  280 (293)
                      |.+|++.-   ...++++|||. +|..|...+.    .||+||.
T Consensus         2 C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    2 CNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence            77887765   46889999999 9999999887    9999984

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=97.48  E-value=3.9e-05  Score=51.29  Aligned_cols=34  Identities=35%  Similarity=0.837  Sum_probs=28.1

Q ss_pred             cccccccCcce-EEeCCCCcccchhhHhcC----CCCCcc
Q 022683          244 CKRCNSRNSCV-LLLPCRHLCSCKQCEAFL----VSCPVC  278 (293)
Q Consensus       244 C~iC~~~~~~v-vllPC~Hl~lC~~C~~~l----~~CPvC  278 (293)
                      |.||++...+. +++||||. .|.+|....    ..||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence            78999998887 78999999 899998764    789987

>PHA02929 N1R/p28-like protein; Provisional

Probab=97.37  E-value=0.00011  Score=68.21  Aligned_cols=48  Identities=23%  Similarity=0.615  Sum_probs=37.2

Q ss_pred             hccccccccccCcc--------eEEeCCCCcccchhhHhc----CCCCCcccccccceEEE
Q 022683          240 RKLACKRCNSRNSC--------VLLLPCRHLCSCKQCEAF----LVSCPVCNSAKVASMEV  288 (293)
Q Consensus       240 ~~~~C~iC~~~~~~--------vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~~~v~v  288 (293)
                      ....|.||++.-..        .++.||+|. +|..|-..    -..||+||.++.+.++.
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~  232 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS  232 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence            35689999996322        466789997 99999854    37999999999877764

>smart00184 RING Ring finger

Probab=97.33  E-value=0.00017  Score=45.76  Aligned_cols=34  Identities=32%  Similarity=0.848  Sum_probs=29.8

Q ss_pred             cccccccCcceEEeCCCCcccchhhHhc-----CCCCCcc
Q 022683          244 CKRCNSRNSCVLLLPCRHLCSCKQCEAF-----LVSCPVC  278 (293)
Q Consensus       244 C~iC~~~~~~vvllPC~Hl~lC~~C~~~-----l~~CPvC  278 (293)
                      |.+|++.....+++||+|. .|..|...     ...||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence            7899999999999999999 89999874     3579987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.08  E-value=0.00018  Score=49.13  Aligned_cols=36  Identities=36%  Similarity=0.790  Sum_probs=29.2

Q ss_pred             cccccccc---CcceEEeCCCCcccchhhHhcC----CCCCccc
Q 022683          243 ACKRCNSR---NSCVLLLPCRHLCSCKQCEAFL----VSCPVCN  279 (293)
Q Consensus       243 ~C~iC~~~---~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr  279 (293)
                      .|.||++.   ...++.+||+|. +|..|....    .+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence            58899886   457888999997 999998764    7999997

...

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=97.05  E-value=0.00054  Score=44.96  Aligned_cols=39  Identities=33%  Similarity=0.829  Sum_probs=30.1

Q ss_pred             ccccccccC-cceEEeCCCCcccchhhHhc-----CCCCCcccccc
Q 022683          243 ACKRCNSRN-SCVLLLPCRHLCSCKQCEAF-----LVSCPVCNSAK  282 (293)
Q Consensus       243 ~C~iC~~~~-~~vvllPC~Hl~lC~~C~~~-----l~~CPvCr~~i  282 (293)
                      .|.+|++.. ..+.+.||+|. +|..|...     ...||+|+..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence            488999987 44555569999 89999863     35799999753

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.00026  Score=62.91  Aligned_cols=49  Identities=22%  Similarity=0.496  Sum_probs=38.2

Q ss_pred             ccccccccccCcceE-E-eCCCCcccchhhHhcC----CCCCccccccc--ceEEEcc
Q 022683          241 KLACKRCNSRNSCVL-L-LPCRHLCSCKQCEAFL----VSCPVCNSAKV--ASMEVFG  290 (293)
Q Consensus       241 ~~~C~iC~~~~~~vv-l-lPC~Hl~lC~~C~~~l----~~CPvCr~~i~--~~v~v~l  290 (293)
                      ...|.||++.....+ + --|||+ +|+.|....    .+||+|+..|+  .+++|||
T Consensus       131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L  187 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL  187 (187)
T ss_pred             ccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence            368999999866655 3 589999 999999864    79999996554  4667765

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.00058  Score=62.84  Aligned_cols=46  Identities=24%  Similarity=0.494  Sum_probs=39.2

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHhcC-------CCCCcccccccce
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-------VSCPVCNSAKVAS  285 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-------~~CPvCr~~i~~~  285 (293)
                      ...-.|-||++...+-|+-+|||| .|=.|--+.       +.||||++.|+..
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~   97 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSID   97 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccc
Confidence            345689999999999999999999 899997653       7899999988754

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.85  E-value=0.00047  Score=50.28  Aligned_cols=43  Identities=28%  Similarity=0.614  Sum_probs=37.0

Q ss_pred             ccccccccccCcceEEeCCCCcccchhhHhc--CCCCCcccccccc
Q 022683          241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAF--LVSCPVCNSAKVA  284 (293)
Q Consensus       241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~--l~~CPvCr~~i~~  284 (293)
                      ...|..|......-+++||+|+ +|..|...  ...||+|..++..
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~   51 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF   51 (55)
T ss_pred             ceeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence            4579999999899999999999 89999865  4899999998764

>PHA02926 zinc finger-like protein; Provisional

Probab=96.83  E-value=0.00047  Score=63.41  Aligned_cols=46  Identities=24%  Similarity=0.548  Sum_probs=35.2

Q ss_pred             hhhccccccccccC---------cceEEeCCCCcccchhhHhcC----------CCCCcccccccc
Q 022683          238 ERRKLACKRCNSRN---------SCVLLLPCRHLCSCKQCEAFL----------VSCPVCNSAKVA  284 (293)
Q Consensus       238 ~~~~~~C~iC~~~~---------~~vvllPC~Hl~lC~~C~~~l----------~~CPvCr~~i~~  284 (293)
                      ...+..|.||++..         +--+|.||+|. +|..|-...          ..||+||..++.
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            45567999999862         12577899999 999997643          349999998764

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.78  E-value=0.00053  Score=45.77  Aligned_cols=34  Identities=38%  Similarity=0.906  Sum_probs=29.3

Q ss_pred             cccccccCcceE-EeCCCCcccchhhHhcC------CCCCcc
Q 022683          244 CKRCNSRNSCVL-LLPCRHLCSCKQCEAFL------VSCPVC  278 (293)
Q Consensus       244 C~iC~~~~~~vv-llPC~Hl~lC~~C~~~l------~~CPvC  278 (293)
                      |.||.+.....+ ++||+|. +|..|....      ..||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence            789999988877 9999999 999998754      579887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.00053  Score=64.92  Aligned_cols=48  Identities=25%  Similarity=0.512  Sum_probs=38.6

Q ss_pred             ccccccccccCcceEEeCCCCcccchhhHhc----CCCCCcccccccceEEEc
Q 022683          241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAF----LVSCPVCNSAKVASMEVF  289 (293)
Q Consensus       241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~~~v~v~  289 (293)
                      ...|.+|+++..+--..||||+ +|-.|-..    -..||+||....-.--|.
T Consensus       239 ~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi~  290 (293)
T KOG0317|consen  239 TRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVIC  290 (293)
T ss_pred             CCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcceee
Confidence            4789999999999888899999 78888543    268999999877654443

>TIGR00599 rad18 DNA repair protein rad18

Probab=96.52  E-value=0.0009  Score=66.30  Aligned_cols=48  Identities=23%  Similarity=0.523  Sum_probs=39.9

Q ss_pred             HhhhhccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683          236 KEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       236 ~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      ..+.....|.||.+.-..-++.||+|. +|..|-...    ..||+|+.++..
T Consensus        21 ~~Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             cccccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence            345667899999999888888999999 899998742    579999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.21  E-value=0.0023  Score=64.72  Aligned_cols=43  Identities=28%  Similarity=0.649  Sum_probs=38.2

Q ss_pred             ccccccccccCcceEEeCCCCcccchhhHhcC---------CCCCcccccccc
Q 022683          241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL---------VSCPVCNSAKVA  284 (293)
Q Consensus       241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l---------~~CPvCr~~i~~  284 (293)
                      ...|.||++.+...+..-|||. .|-.|--.+         ..||+|+..|.-
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            7899999999999999999999 899996542         799999999987

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.0021  Score=56.65  Aligned_cols=42  Identities=36%  Similarity=0.770  Sum_probs=35.8

Q ss_pred             hhhccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccc
Q 022683          238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNS  280 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~  280 (293)
                      ..+...|.||++.-..-.++||+|. +|..|....    -.||.||.
T Consensus        10 ~~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             ccccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence            3456789999998777799999999 999999875    48999993

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.98  E-value=0.0037  Score=60.94  Aligned_cols=47  Identities=26%  Similarity=0.726  Sum_probs=40.1

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHhcC------CCCCcccccccceE
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL------VSCPVCNSAKVASM  286 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l------~~CPvCr~~i~~~v  286 (293)
                      .+.+.|.||-+.-.-+.++||+|. .|-.|+.++      +.||+||..-..++
T Consensus        59 Een~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~  111 (493)
T COG5236          59 EENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV  111 (493)
T ss_pred             cccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence            346799999999998999999999 899999875      89999998755443

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.0023  Score=62.42  Aligned_cols=45  Identities=22%  Similarity=0.544  Sum_probs=38.0

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHhc----CCCCCcccccccc
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF----LVSCPVCNSAKVA  284 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~~  284 (293)
                      .++..|.||+..+++.+|-||+|. .|+.|-..    .+.|-.|..++..
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeee
Confidence            356799999999999999999999 89999875    2788888777654

>smart00504 Ubox Modified RING finger domain

Probab=95.91  E-value=0.0061  Score=43.90  Aligned_cols=42  Identities=12%  Similarity=0.076  Sum_probs=35.0

Q ss_pred             cccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683          242 LACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       242 ~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      ..|.+|++--.+-++.||||. .|+.|-...    ..||+|+.+++.
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            469999998888788999987 899998754    689999998743

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=95.71  E-value=0.0056  Score=41.93  Aligned_cols=34  Identities=38%  Similarity=0.834  Sum_probs=25.6

Q ss_pred             cccccccCcceEEeCCCCcccchhhHhcC--------CCCCcc
Q 022683          244 CKRCNSRNSCVLLLPCRHLCSCKQCEAFL--------VSCPVC  278 (293)
Q Consensus       244 C~iC~~~~~~vvllPC~Hl~lC~~C~~~l--------~~CPvC  278 (293)
                      |.||++--.+=+.++|||. +|..|-.+.        -.||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence            7899999899889999999 999998764        268887

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.0056  Score=57.52  Aligned_cols=41  Identities=27%  Similarity=0.636  Sum_probs=34.9

Q ss_pred             ccccccccccCcceEEeCCCCcccchhhHhc------CCCCCcccccc
Q 022683          241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAF------LVSCPVCNSAK  282 (293)
Q Consensus       241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~------l~~CPvCr~~i  282 (293)
                      ...|.+|.+..-+-.-.||||+ +|-.|--.      ...||+||+..
T Consensus       215 d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~  261 (271)
T COG5574         215 DYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKV  261 (271)
T ss_pred             ccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhc
Confidence            5689999999999999999999 77777655      36799999864

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=95.12  E-value=0.0082  Score=41.60  Aligned_cols=27  Identities=41%  Similarity=0.917  Sum_probs=16.6

Q ss_pred             cccccccCcc----eEEeCCCCcccchhhHhcC
Q 022683          244 CKRCNSRNSC----VLLLPCRHLCSCKQCEAFL  272 (293)
Q Consensus       244 C~iC~~~~~~----vvllPC~Hl~lC~~C~~~l  272 (293)
                      |.||++ ..+    -++|||||. +|.+|..++
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l   31 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL   31 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence            778888 555    577899999 999998765

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=94.86  E-value=0.011  Score=56.44  Aligned_cols=46  Identities=28%  Similarity=0.535  Sum_probs=38.9

Q ss_pred             hhhhccccccccccCcceEEeCCCCcccchhhHhcC----CCCCccccccc
Q 022683          237 EERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKV  283 (293)
Q Consensus       237 ~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~  283 (293)
                      .+.....|.||.+.-+--++-||||- +|.-|-..-    ..||+||.+..
T Consensus        21 ~LDs~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          21 GLDSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             cchhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHH
Confidence            34556789999999999999999999 899998763    79999998754

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=94.82  E-value=0.0087  Score=58.24  Aligned_cols=49  Identities=27%  Similarity=0.545  Sum_probs=42.1

Q ss_pred             HhhhhccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccce
Q 022683          236 KEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVAS  285 (293)
Q Consensus       236 ~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~  285 (293)
                      ..+.+...|-||++--..-++.||+|. +|.-|-...    ..||.|+.+++.+
T Consensus        18 k~lD~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es   70 (442)
T KOG0287|consen   18 KTLDDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES   70 (442)
T ss_pred             hhhHHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence            456677899999999999999999999 899998865    7999999987653

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.66  E-value=0.023  Score=54.59  Aligned_cols=46  Identities=30%  Similarity=0.588  Sum_probs=35.0

Q ss_pred             hhhhccccccccccC---cceEEeCCCCcccchhhHhcC-----CCCCccccccc
Q 022683          237 EERRKLACKRCNSRN---SCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKV  283 (293)
Q Consensus       237 ~~~~~~~C~iC~~~~---~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~  283 (293)
                      +......|.||+++-   -.++.+||.|. +=..|..+.     .+||+||.++.
T Consensus       319 ea~~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         319 EADKGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             hcCCCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence            344557899999852   23778899998 667787763     69999999874

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.66  E-value=0.028  Score=57.66  Aligned_cols=44  Identities=23%  Similarity=0.482  Sum_probs=36.7

Q ss_pred             hhhccccccccccCcc-----eEEeCCCCcccchhhHhcC----CCCCcccccc
Q 022683          238 ERRKLACKRCNSRNSC-----VLLLPCRHLCSCKQCEAFL----VSCPVCNSAK  282 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~-----vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i  282 (293)
                      ......|.||.+.-..     ...+||+|. ++..|-.+.    ..||+||..+
T Consensus       288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  288 ALSDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             hhcCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence            3446789999998777     789999999 899998763    8999999943

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=93.44  E-value=0.031  Score=55.11  Aligned_cols=44  Identities=23%  Similarity=0.536  Sum_probs=30.6

Q ss_pred             hhhccccccccccC-------------cceEEeCCCCcccchhhHhc----CCCCCcccccc
Q 022683          238 ERRKLACKRCNSRN-------------SCVLLLPCRHLCSCKQCEAF----LVSCPVCNSAK  282 (293)
Q Consensus       238 ~~~~~~C~iC~~~~-------------~~vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i  282 (293)
                      .++++.|.||++.-             ..--=+||||. +=-.|-+.    -++||+||.++
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence            45678999999971             11134799997 44444432    38999999984

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.20  E-value=0.074  Score=40.44  Aligned_cols=27  Identities=26%  Similarity=0.664  Sum_probs=19.7

Q ss_pred             cceEEeCCCCcccchhhHhc----CCCCCccc
Q 022683          252 SCVLLLPCRHLCSCKQCEAF----LVSCPVCN  279 (293)
Q Consensus       252 ~~vvllPC~Hl~lC~~C~~~----l~~CPvCr  279 (293)
                      ..+++.+|+|. +-..|-..    -..||+||
T Consensus        43 ~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   43 CPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             S-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred             cceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence            55677899999 77788664    27999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=91.84  E-value=0.12  Score=39.11  Aligned_cols=45  Identities=29%  Similarity=0.572  Sum_probs=24.7

Q ss_pred             hhhhccccccccccCcc-eEEeCCCCcccchhhHhcC--CCCCcccccc
Q 022683          237 EERRKLACKRCNSRNSC-VLLLPCRHLCSCKQCEAFL--VSCPVCNSAK  282 (293)
Q Consensus       237 ~~~~~~~C~iC~~~~~~-vvllPC~Hl~lC~~C~~~l--~~CPvCr~~i  282 (293)
                      .....+.|.+|.+--.. |.+--|.|. +|..|....  ..||+|+.+.
T Consensus         3 ~le~lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa   50 (65)
T PF14835_consen    3 RLEELLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA   50 (65)
T ss_dssp             HHHHTTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred             HHHHhcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence            34566889999987555 457799999 999998875  7899999875

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.28  E-value=0.11  Score=50.79  Aligned_cols=43  Identities=26%  Similarity=0.568  Sum_probs=30.5

Q ss_pred             ccccccccc---CcceEEeCCCCcccchhhHhcC-----CCCCcccccccce
Q 022683          242 LACKRCNSR---NSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVAS  285 (293)
Q Consensus       242 ~~C~iC~~~---~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~~  285 (293)
                      ..|.||++.   .-.+.+|||.|.--| .|-...     +.||+|+..+...
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~-~CIDpWL~~~r~~CPvCK~di~~~  280 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHV-NCIDPWLTQTRTFCPVCKRDIRTD  280 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhh-ccchhhHhhcCccCCCCCCcCCCC
Confidence            479999885   334667999999443 465442     5699999987654

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]

Probab=91.22  E-value=0.18  Score=48.80  Aligned_cols=49  Identities=6%  Similarity=-0.069  Sum_probs=42.8

Q ss_pred             ccccccccccCcceEEeCCCCcccchhhHhcC--CCCCcccccccceEEEc
Q 022683          241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL--VSCPVCNSAKVASMEVF  289 (293)
Q Consensus       241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l--~~CPvCr~~i~~~v~v~  289 (293)
                      .+.|.+|..+-.+.++.||+|.-.|..|+..-  ..||+|....-..++|.
T Consensus       343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i~  393 (394)
T KOG2113|consen  343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPIN  393 (394)
T ss_pred             hcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeecC
Confidence            46899999999999999999999999999743  69999998877776653

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.63  E-value=0.16  Score=48.24  Aligned_cols=44  Identities=23%  Similarity=0.597  Sum_probs=35.7

Q ss_pred             hhccccccccccCcc-eEEeCCCCcccchhhHhcC------CCCCccccccc
Q 022683          239 RRKLACKRCNSRNSC-VLLLPCRHLCSCKQCEAFL------VSCPVCNSAKV  283 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~-vvllPC~Hl~lC~~C~~~l------~~CPvCr~~i~  283 (293)
                      .....|.+|.+.+.- .+..||||. .|..|...-      -.||.|..+..
T Consensus       237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence            345689999999876 677899996 899998753      38999998766

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.67  E-value=0.14  Score=50.95  Aligned_cols=45  Identities=27%  Similarity=0.570  Sum_probs=34.3

Q ss_pred             hhhccccccccccCcc---eEEeCCCCcccchhhHhcC------------CCCCccccccc
Q 022683          238 ERRKLACKRCNSRNSC---VLLLPCRHLCSCKQCEAFL------------VSCPVCNSAKV  283 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~---vvllPC~Hl~lC~~C~~~l------------~~CPvCr~~i~  283 (293)
                      .+....|.||++....   ++|+||+|+ +|+.|....            -+||-|..+-.
T Consensus       181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~  240 (445)
T KOG1814|consen  181 VNSLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSV  240 (445)
T ss_pred             HhhcccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCCccc
Confidence            3456789999997654   889999998 999998753            47777665433

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.54  E-value=0.15  Score=49.86  Aligned_cols=48  Identities=21%  Similarity=0.395  Sum_probs=38.0

Q ss_pred             hhccccccccccCcceE-----E---eCCCCcccchhhHhc-----------CCCCCcccccccceEE
Q 022683          239 RRKLACKRCNSRNSCVL-----L---LPCRHLCSCKQCEAF-----------LVSCPVCNSAKVASME  287 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vv-----l---lPC~Hl~lC~~C~~~-----------l~~CPvCr~~i~~~v~  287 (293)
                      ..+..|-||++.-....     |   .+|-|. +|..|...           .+.||+||.+....+.
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p  225 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP  225 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence            34678999999877766     5   679999 99999764           3799999998776553

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.37  E-value=0.42  Score=45.01  Aligned_cols=47  Identities=21%  Similarity=0.454  Sum_probs=38.6

Q ss_pred             hhhcccccccccc----CcceEEeCCCCcccchhhHhcC----CCCCcccccccce
Q 022683          238 ERRKLACKRCNSR----NSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVAS  285 (293)
Q Consensus       238 ~~~~~~C~iC~~~----~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~  285 (293)
                      .....+|.+|.+.    ..+++|-||||+ +|.+|..++    ..||+|..+.+..
T Consensus       218 ~s~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkdr  272 (303)
T KOG3039|consen  218 ASKRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKDR  272 (303)
T ss_pred             hccceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCccc
Confidence            3467899999885    456788999998 899999987    6999999887653

>PF04641 Rtf2: Rtf2 RING-finger

Probab=87.26  E-value=0.49  Score=44.16  Aligned_cols=46  Identities=22%  Similarity=0.468  Sum_probs=36.3

Q ss_pred             hhcccccccccc----CcceEEeCCCCcccchhhHhcCC---CCCcccccccce
Q 022683          239 RRKLACKRCNSR----NSCVLLLPCRHLCSCKQCEAFLV---SCPVCNSAKVAS  285 (293)
Q Consensus       239 ~~~~~C~iC~~~----~~~vvllPC~Hl~lC~~C~~~l~---~CPvCr~~i~~~  285 (293)
                      .....|.|....    ..-|+|.||||+ ++..+...+.   .||+|..+++..
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~~  163 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTEE  163 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCccccC
Confidence            446789888754    456778899997 7888888776   899999997754

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=86.07  E-value=0.42  Score=45.93  Aligned_cols=45  Identities=24%  Similarity=0.484  Sum_probs=34.0

Q ss_pred             hhccccccccccCcceEE-eCCCCcccchhhHh-cCCCCCcccccccc
Q 022683          239 RRKLACKRCNSRNSCVLL-LPCRHLCSCKQCEA-FLVSCPVCNSAKVA  284 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvl-lPC~Hl~lC~~C~~-~l~~CPvCr~~i~~  284 (293)
                      .+-..|.+|++.-.-=++ -+=||+ +|..|.. ....||.||-+++.
T Consensus        46 ~~lleCPvC~~~l~~Pi~QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~   92 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPPIFQCDNGHL-ACSSCRTKVSNKCPTCRLPIGN   92 (299)
T ss_pred             hhhccCchhhccCcccceecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence            345689999987554444 234899 8999995 45899999999983

>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ]

Probab=84.59  E-value=0.29  Score=48.62  Aligned_cols=41  Identities=22%  Similarity=0.435  Sum_probs=0.0

Q ss_pred             cCcceEEeCCCCcccc----hhhHhcC--------CCCCcccccccc---eEEEcc
Q 022683          250 RNSCVLLLPCRHLCSC----KQCEAFL--------VSCPVCNSAKVA---SMEVFG  290 (293)
Q Consensus       250 ~~~~vvllPC~Hl~lC----~~C~~~l--------~~CPvCr~~i~~---~v~v~l  290 (293)
                      .+.+.+|.||||+|.=    ..+.-.+        ..||+|-.++.+   .|++++
T Consensus       356 ~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~vrLiF  411 (416)
T PF04710_consen  356 GPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYVRLIF  411 (416)
T ss_dssp             --------------------------------------------------------
T ss_pred             CCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCceEEEE
Confidence            4567889999999621    1111111        599999999976   677655

; PDB: 3EGB_B 3EGA_A.

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=84.31  E-value=0.41  Score=46.39  Aligned_cols=41  Identities=27%  Similarity=0.805  Sum_probs=30.6

Q ss_pred             cccccccccCcceE--EeCCCCcccchhhHhcC--CCCCcccccccc
Q 022683          242 LACKRCNSRNSCVL--LLPCRHLCSCKQCEAFL--VSCPVCNSAKVA  284 (293)
Q Consensus       242 ~~C~iC~~~~~~vv--llPC~Hl~lC~~C~~~l--~~CPvCr~~i~~  284 (293)
                      -.|..|.. +.-|.  ++||.|+ +|.+|+..-  +.||.|-..|..
T Consensus        91 HfCd~Cd~-PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vqr  135 (389)
T KOG2932|consen   91 HFCDRCDF-PIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQR  135 (389)
T ss_pred             EeecccCC-cceeeecccccchh-hhhhhhhcCccccCcCcccHHHH
Confidence            46777754 33333  7899998 999999864  699999876654

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=82.11  E-value=1.1  Score=39.47  Aligned_cols=20  Identities=25%  Similarity=0.625  Sum_probs=17.2

Q ss_pred             ccccccccccCcceEEeCCC
Q 022683          241 KLACKRCNSRNSCVLLLPCR  260 (293)
Q Consensus       241 ~~~C~iC~~~~~~vvllPC~  260 (293)
                      +..|.||++.+=++|||-|-
T Consensus         2 d~~CpICme~PHNAVLLlCS   21 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCS   21 (162)
T ss_pred             CccCceeccCCCceEEEEec
Confidence            35799999999999998874

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=81.85  E-value=1  Score=34.00  Aligned_cols=44  Identities=11%  Similarity=0.069  Sum_probs=31.8

Q ss_pred             hccccccccccCcceEEeCCCCcccchhhHhc-----CCCCCcccccccc
Q 022683          240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF-----LVSCPVCNSAKVA  284 (293)
Q Consensus       240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~-----l~~CPvCr~~i~~  284 (293)
                      +...|.|+++--.+=+++||||. .++.|-..     -..||+|+.+++.
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            45789999999999999999966 78877654     3679999988875

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length

Probab=81.50  E-value=16  Score=35.33  Aligned_cols=93  Identities=17%  Similarity=0.170  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhHhhcCHHHHHHHh
Q 022683          101 QSLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVES-----------------KAMNLMRQKEEDLIQAT  163 (293)
Q Consensus       101 ~~l~~~l~~q~~EiD~~i~~q~erlr~~l~e~r~rh~r~ll~avE~-----------------~~~~~LrqK~eELa~Ag  163 (293)
                      .+..++|.+.+.|+.-+|+.+..+|-..++.+.    +.||.+|+.                 +++.|+|--..=.++++
T Consensus        23 ~sav~qL~~~r~~teelIr~rVrq~V~hVqaqE----reLLe~v~~rYqR~y~ema~~L~~LeavLqRir~G~~LVekM~   98 (324)
T PF12126_consen   23 RSAVSQLGRARADTEELIRARVRQVVAHVQAQE----RELLEAVEARYQRDYEEMAGQLGRLEAVLQRIRTGGALVEKMK   98 (324)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHH
Confidence            346779999999999999988777766555443    356666553                 34455555555555556


Q ss_pred             hhhhhhH------------HHHhhccccchHHHHHHHHhHHhHHHH
Q 022683          164 RRAMELE------------ACLRKAEMESESWQRLARANEAMVMDL  197 (293)
Q Consensus       164 ~~y~ele------------erLr~w~~E~~~Wq~hAr~neac~~~L  197 (293)
                      .|..+.|            ++|++-++.+.-=.-+...|..|..-|
T Consensus        99 ~YASDQEVLdMh~FlreAL~rLrqeePq~lqa~V~td~F~E~k~rL  144 (324)
T PF12126_consen   99 LYASDQEVLDMHGFLREALERLRQEEPQNLQAAVRTDGFDEFKARL  144 (324)
T ss_pred             HhcchHHHHHHHHHHHHHHHHhhhhcCcccccceecccHHHHHHHH
Confidence            6666533            345665555555555555566665533

It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.97  E-value=0.74  Score=45.96  Aligned_cols=45  Identities=27%  Similarity=0.641  Sum_probs=35.9

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHh----cCCCCCcccccccc
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEA----FLVSCPVCNSAKVA  284 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~----~l~~CPvCr~~i~~  284 (293)
                      .+...|.+|+..--.-+-.||||. .|..|-.    .-..||.||.++..
T Consensus        82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence            566789999988666666699999 8999833    33799999998764

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.11  E-value=0.73  Score=44.29  Aligned_cols=45  Identities=24%  Similarity=0.496  Sum_probs=38.4

Q ss_pred             ccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccceEEE
Q 022683          243 ACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASMEV  288 (293)
Q Consensus       243 ~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~v  288 (293)
                      .|-||..--.+=|.--|+|. +|..|+.+-    ..|++|...+.++..+
T Consensus       243 ~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~~  291 (313)
T KOG1813|consen  243 KCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFNV  291 (313)
T ss_pred             cccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccch
Confidence            59999998888777899999 899999863    6899999999887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	293
4ic2_A	74	Crystal Structure Of The Xiap Ring Domain Length =		2e-04
2ecg_A	75	Solution Structure Of The Ring Domain Of The Baculo		2e-04
3t6p_A	345	Iap Antagonist-Induced Conformational Change In Cia		8e-04

>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain Length = 74

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 244 CKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS 291
           CK C  RN  ++ +PC HL +CKQC   +  CP+C +      ++F S
Sbjct: 27  CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 74

>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral Iap Repeat-Containing Protein 4 From Homo Sapiens Length = 75

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 244 CKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS 291
           CK C  RN  ++ +PC HL +CKQC   +  CP+C +      ++F S
Sbjct: 28  CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75

>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1 Promotes E3 Ligase Activation Via Dimerization Length = 345

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 243 ACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVF 289
            CK C  +   V+ +PC HL  C++C   L  CP+C      ++  F
Sbjct: 297 TCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	3e-12
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	2e-10
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2ea5_A	68	Cell growth regulator with ring finger domain prot	7e-09
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	6e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-04

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 65.0 bits (156), Expect = 3e-12
 Identities = 34/247 (13%), Positives = 85/247 (34%), Gaps = 4/247 (1%)

Query: 45  FSFQDTRHHHHFLFAHPDHSQQNPHQNLVFDSNSKASSSSSSTRAGNIFSSMAALPQSLH 104
             +                  ++  +        K +  S     G  + ++  +  +L 
Sbjct: 103 IHYGPGESSSEDAVMMNTPVVKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSALL 162

Query: 105 TQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATR 164
              + +R+E +     +      +L+ + +  L   L  V     NL++    +     +
Sbjct: 163 NAEDEKREEEKEKQAEEMASDDLSLIRKNRMALFQQLTCVLPILDNLLKANVIN----KQ 218

Query: 165 RAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCD 224
               ++   +      E    +     A      N+L+++   +       ++ + +  +
Sbjct: 219 EHDIIKQKTQIPLQARELIDTILVKGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTE 278

Query: 225 SCDDNNREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVA 284
                + E++L+  + +  CK C  +   V+ +PC HL  C++C   L  CP+C      
Sbjct: 279 DVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKG 338

Query: 285 SMEVFGS 291
           ++  F S
Sbjct: 339 TVRTFLS 345

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 20/65 (30%), Positives = 36/65 (55%)

Query: 227 DDNNREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASM 286
            + + E++L+  + +  CK C  RN  ++ +PC HL +CKQC   +  CP+C +      
Sbjct: 11  KEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQ 70

Query: 287 EVFGS 291
           ++F S
Sbjct: 71  KIFMS 75

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 232 EQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVF 289
           +++L++ +  + C  C          PC H   C+ C A L SCPVC S       V+
Sbjct: 9   QEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 4e-09
 Identities = 36/290 (12%), Positives = 87/290 (30%), Gaps = 88/290 (30%)

Query: 52  HHHHFLF--AHPDHSQQN--PH--QNLVFDSNSKASSSSSSTRAGNIFSSMAALPQSLHT 105
           HHHH  F      +  ++         V + + K        +  +I S           
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCK--DVQDMPK--SILSK---------- 48

Query: 106 QLELQRQELECILHI-----QSERLRSALLEQRKQQLGAVLKSVESKAMN-LMRQKEEDL 159
                 +E++ I+        + RL   LL ++++ +   ++ V       LM   + + 
Sbjct: 49  ------EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102

Query: 160 IQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVK--ERI--------- 208
            Q +           +   +++ + +   +     + L   L +++  + +         
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 209 --VLVSNRAEDAESVC-------------CDSCDD-----NN------------------ 230
              +  +     +  C             C+S +                          
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 231 ---REQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPV 277
              R   ++ E R+L   +      C+L+L   ++ + K   AF +SC +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYEN--CLLVL--LNVQNAKAWNAFNLSCKI 268

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 40/280 (14%), Positives = 93/280 (33%), Gaps = 48/280 (17%)

Query: 11  NLGNL--PMCGLQMQQD-WAVINPVPVSSAAINADLRFSFQDTRHHHHFLFAHPDHSQQN 67
           NL N   P   L+M Q     I+P   S +  +++++      +     L     +    
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---- 243

Query: 68  PHQNLVFD--SNSKASSSSS-------STRAGNIFSSMAALPQSLHTQLELQRQELECIL 118
            +  LV     N+KA ++ +       +TR   +   ++A   + H  L+     L    
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT-HISLDHHSMTLT--- 299

Query: 119 HIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEM 178
             + + L    L+ R Q L       E    N         +     ++ +   +R    
Sbjct: 300 PDEVKSLLLKYLDCRPQDL-----PREVLTTNPR------RL-----SI-IAESIRDGLA 342

Query: 179 ESESWQRLARANEAMVMDLS-NTLE--QVKERIVLVSNRAEDA---ESVCC---DSCDDN 229
             ++W+ +       +++ S N LE  + ++    +S     A     +          +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 230 NREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCE 269
           +    + +  +    ++    ++    +P  +L    + E
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKLE 440

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 50.6 bits (121), Expect = 7e-09
 Identities = 17/56 (30%), Positives = 22/56 (39%)

Query: 236 KEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS 291
             E     C  C +     +LLPCRH C C  C  +   CP+C      S  + G 
Sbjct: 10  PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP 65

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 244 CKRC--NSRNSCVLLLPCRHLCSCKQCEAFLV----SCPVCNSAKVASMEVFGS 291
           C  C    R+  ++     HL +C  C   L     SCP+C       ++VF +
Sbjct: 10  CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 24/160 (15%), Positives = 57/160 (35%), Gaps = 18/160 (11%)

Query: 101  QSLHTQLELQRQELECILHIQSERLRSAL-----LEQRKQQLGAVLKSVESKAMNLMRQK 155
            + LH  LE +  +L+  +  Q++  +S L     LE         L+S   +      + 
Sbjct: 920  KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA 979

Query: 156  ---EEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVL-- 210
                  ++       +L   L + + E ++ +  A   +     L + L++    +    
Sbjct: 980  KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEK 1039

Query: 211  --VSNRAEDAESVCCDSCDDNNREQ------ELKEERRKL 242
              ++ R  D      ++ +    E+      +L +ER + 
Sbjct: 1040 EELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 23/166 (13%)

Query: 101  QSLHTQLELQRQELECILHIQSERL-----RSALLEQRKQQLGAVLKSVESKAMNLMRQK 155
            Q      + + +++E  + I  ++         LLE+R   L   L   E KA NL + K
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034

Query: 156  ----------EEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVK 205
                      E  L +  +   ELE   RK E ES          +A + +L   L + +
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE 1094

Query: 206  ERIVLVSNRAEDAESVCCDSCDDNNR--------EQELKEERRKLA 243
            E +     R ED  S   ++              +++L+ E+    
Sbjct: 1095 EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 52/131 (39%)

Query: 105 TQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATR 164
            Q +   QE E I      + R    E+++++L        SK        E++  +   
Sbjct: 75  AQADRLTQEPESI-----RKWR----EEQRKRLQE--LDAASK------VMEQEWRE--- 114

Query: 165 RAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCD 224
                     KA+ + E W +  R +E         +E+ K      +NR  D       
Sbjct: 115 ----------KAKKDLEEWNQ--RQSE--------QVEKNKI-----NNRIADKAFY--- 146

Query: 225 SCDDNNREQEL 235
                  + ++
Sbjct: 147 ----QQPDADI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	99.81
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.45
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.44
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.42
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.4
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.4
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.36
1jd5_A	124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	98.93
2i3h_A	133	Baculoviral IAP repeat-containing protein 7; zinc	98.92
3d9t_A	97	Baculoviral IAP repeat-containing protein 2; zinc	98.91
2vm5_A	106	Baculoviral IAP repeat-containing protein 1; apopt	98.87
3hl5_A	95	Baculoviral IAP repeat-containing protein 4; BIR,	98.84
3mup_A	122	Baculoviral IAP repeat-containing protein 2; zinc-	98.82
1g73_C	121	Inhibitors of apoptosis-like protein ILP; helix bu	98.8
3m1d_A	85	Baculoviral IAP repeat-containing protein 2; BIR,	98.62
1i4o_C	141	X-linked IAP, baculoviral IAP repeat-containing pr	98.61
2poi_A	94	Baculoviral IAP repeat-containing protein 4; zinc	98.56
2qra_D	111	XIAP, baculoviral IAP repeat-containing protein 4,	98.51
1se0_A	116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	98.48
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.39
2qfa_A	142	Baculoviral IAP repeat-containing protein 5; three	98.36
3siq_A	136	Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase;	98.33
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.33
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.29
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.26
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.25
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.17
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.17
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.12
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.06
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.05
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.01
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.0
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	97.99
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	97.98
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	97.98
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	97.98
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	97.97
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	97.97
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	97.97
2ect_A	78	Ring finger protein 126; metal binding protein, st	97.92
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	97.89
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	97.88
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	97.85
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	97.84
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	97.84
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	97.82
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	97.81
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	97.81
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	97.79
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	97.78
1z6u_A	150	NP95-like ring finger protein isoform B; structura	97.78
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	97.76
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	97.75
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	97.74
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	97.71
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	97.66
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	97.6
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	97.58
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	97.55
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	97.54
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	97.49
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	97.49
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.41
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.3
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.27
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.14
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	96.99
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	96.93
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.87
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	96.58
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	96.57
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.51
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	96.45
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	96.2
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	96.16
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	95.56
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	95.34
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	94.6
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	94.27
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	90.27
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	89.91
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	84.12

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=99.81  E-value=6.2e-21  Score=182.21  Aligned_cols=54  Identities=30%  Similarity=0.774  Sum_probs=49.3

Q ss_pred             hhhccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEEEccc
Q 022683          238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS  291 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~lS  291 (293)
                      ..+...|.||++...+.+++||||.|+|..|...+..||+||.+|+..++||+|
T Consensus       292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s  345 (345)
T 3t6p_A          292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS  345 (345)
T ss_dssp             HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred             CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence            345678999999999999999999999999999999999999999999999987

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.45  E-value=5.7e-14  Score=107.10  Aligned_cols=60  Identities=28%  Similarity=0.625  Sum_probs=54.8

Q ss_pred             HHHHhhhhccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEEEcccC
Q 022683          233 QELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGSD  292 (293)
Q Consensus       233 ~e~~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~lS~  292 (293)
                      ++.+...+...|+||+++.++++|+||||.++|..|...+..||+||.+|...+++|++.
T Consensus        10 ~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p~   69 (79)
T 2yho_A           10 EKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLPT   69 (79)
T ss_dssp             HHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCTT
T ss_pred             HHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeCc
Confidence            444566777899999999999999999999999999999999999999999999999863

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=3.5e-14  Score=105.46  Aligned_cols=52  Identities=31%  Similarity=0.793  Sum_probs=49.4

Q ss_pred             hccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEEEccc
Q 022683          240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS  291 (293)
Q Consensus       240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~lS  291 (293)
                      +...|+||+++.++++|+||||+++|..|+..+..||+||.+|...++||.+
T Consensus        14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~   65 (68)
T 2ea5_A           14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP   65 (68)
T ss_dssp             CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCSS
T ss_pred             CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeecC
Confidence            3568999999999999999999999999999999999999999999999975

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.42  E-value=1.2e-13  Score=103.44  Aligned_cols=59  Identities=31%  Similarity=0.750  Sum_probs=53.7

Q ss_pred             HHHHhhhhccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEEEccc
Q 022683          233 QELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS  291 (293)
Q Consensus       233 ~e~~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~lS  291 (293)
                      ++.+...+...|.||++...+.+++||||.++|..|...+..||+||.+|...++||+|
T Consensus        16 ~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S   74 (74)
T 4ic3_A           16 EQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS   74 (74)
T ss_dssp             HHHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred             HHHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence            34456677889999999999999999999999999999999999999999999999997

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.1e-13  Score=103.70  Aligned_cols=60  Identities=33%  Similarity=0.785  Sum_probs=54.5

Q ss_pred             HHHHHhhhhccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEEEccc
Q 022683          232 EQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS  291 (293)
Q Consensus       232 e~e~~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~lS  291 (293)
                      ++..+...+...|.||++...+.+++||||.++|..|...+..||+||.+|...++||+|
T Consensus        16 ~~~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S   75 (75)
T 2ecg_A           16 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS   75 (75)
T ss_dssp             HHHHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred             HHHHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence            344455667789999999999999999999999999999999999999999999999987

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.40  E-value=4.6e-14  Score=103.03  Aligned_cols=52  Identities=27%  Similarity=0.550  Sum_probs=47.7

Q ss_pred             hccccccccccCcceEEe--CCCCcccchhhHhcCC----CCCcccccccceEEEccc
Q 022683          240 RKLACKRCNSRNSCVLLL--PCRHLCSCKQCEAFLV----SCPVCNSAKVASMEVFGS  291 (293)
Q Consensus       240 ~~~~C~iC~~~~~~vvll--PC~Hl~lC~~C~~~l~----~CPvCr~~i~~~v~v~lS  291 (293)
                      ....|+||++++++.+++  ||||+++|..|+..+.    .||+||.+|...++||+|
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s   63 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA   63 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence            356899999999988777  9999999999999885    999999999999999986

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.36  E-value=1e-13  Score=101.53  Aligned_cols=52  Identities=23%  Similarity=0.458  Sum_probs=47.7

Q ss_pred             hccccccccccCcceEEe--CCCCcccchhhHhcCC----CCCcccccccceEEEccc
Q 022683          240 RKLACKRCNSRNSCVLLL--PCRHLCSCKQCEAFLV----SCPVCNSAKVASMEVFGS  291 (293)
Q Consensus       240 ~~~~C~iC~~~~~~vvll--PC~Hl~lC~~C~~~l~----~CPvCr~~i~~~v~v~lS  291 (293)
                      +...|+||+++.++++|+  ||||+++|..|+..+.    .||+||.+|...+++|+|
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~   64 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP   64 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence            456899999999999998  9999999999998873    699999999999999986

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A

Probab=98.93  E-value=1.1e-10  Score=96.87  Aligned_cols=61  Identities=15%  Similarity=0.107  Sum_probs=53.2

Q ss_pred             HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhhc
Q 022683          147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVS  212 (293)
Q Consensus       147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~~  212 (293)
                      .|+..++.++++||+|||||++.+         ..|++|+++|+||.+|+||+|.|.|     |..+|+..|+..
T Consensus        35 ~WP~~~~~~p~~LA~AGFyYtg~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~F-----v~~~kg~~fv~~  104 (124)
T 1jd5_A           35 AWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRF-----VKLMKGQLYIDT  104 (124)
T ss_dssp             GCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHH-----HHHHHCHHHHHH
T ss_pred             hCCCCccCCHHHHHHcCCCCcCCCCEEEecCCCCEecCCCCCCCHHHHHHHHCcCCce-----eecccchHHHHH
Confidence            477777889999999999999954         4599999999999999999999999     677888877653

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*

Probab=98.92  E-value=1.3e-10  Score=97.39  Aligned_cols=61  Identities=13%  Similarity=-0.004  Sum_probs=53.2

Q ss_pred             HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhhc
Q 022683          147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVS  212 (293)
Q Consensus       147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~~  212 (293)
                      .|+...+..+++||+|||||++..         ..|++|+++|+||.+|+||+|.|.|     |..+|+.+|+..
T Consensus        57 ~WP~~~~~~pe~LA~AGFYYtg~~D~V~Cf~C~~~L~~We~~DDP~~EH~r~~P~C~F-----v~~~Kg~~fv~~  126 (133)
T 2i3h_A           57 DWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQF-----LLRSKGQEYINN  126 (133)
T ss_dssp             TCSCTTTSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHH-----HHHHHCHHHHHH
T ss_pred             cCCCCcCCCHHHHHHcCCCCcCCCCEEEecccCCEeCCCCCCCCHHHHHHHHCcCCce-----ehhcccHHHHHH
Confidence            477667889999999999999954         4599999999999999999999999     667888888753

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A

Probab=98.91  E-value=1.3e-10  Score=92.26  Aligned_cols=60  Identities=17%  Similarity=0.058  Sum_probs=52.1

Q ss_pred             HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhh
Q 022683          147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLV  211 (293)
Q Consensus       147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~  211 (293)
                      .|+...+..+++||+|||||++.+         ..|++|+++|+||.+|++|+|.|.+     |..+|+++|+.
T Consensus        23 ~Wp~~~~~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~Ddp~~eH~r~~p~C~f-----~~~~kg~~~v~   91 (97)
T 3d9t_A           23 YWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEF-----LIRMKGQEFVD   91 (97)
T ss_dssp             GCCTTSSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTBHH-----HHHHHCHHHHH
T ss_pred             cCCCcccCCHHHHHHcCCCCcCCCCEEEecCcCCEecCCCCCCCHHHHHHHhCccChh-----hHhhccHHHHH
Confidence            366666789999999999999854         4589999999999999999999999     77788888865

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}

Probab=98.87  E-value=2.1e-10  Score=92.62  Aligned_cols=59  Identities=15%  Similarity=0.081  Sum_probs=50.0

Q ss_pred             HHHhHhh-cCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhh
Q 022683          147 KAMNLMR-QKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVL  210 (293)
Q Consensus       147 ~~~~~Lr-qK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~  210 (293)
                      .|+...+ ..+++||+|||||++.+         ..|++|+++|+||.+|++|+|.|.|     |...|+..++
T Consensus        30 ~WP~~~~~~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p~C~F-----v~~~Kg~~~i   98 (106)
T 2vm5_A           30 NWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWKEHAKWFPKCEF-----LRSKKSSEEI   98 (106)
T ss_dssp             GCCGGGTTSCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHH-----HHHHHCCTTS
T ss_pred             cCCCCcccCCHHHHHHcCCCCcCCCCEEEccccCCEecCCCCCCCHHHHHHHHCcCCcc-----hhhccCHHHH
Confidence            3665555 78999999999999854         4599999999999999999999999     6677876654

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A

Probab=98.84  E-value=4.3e-10  Score=89.08  Aligned_cols=53  Identities=17%  Similarity=0.148  Sum_probs=47.8

Q ss_pred             cCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhh
Q 022683          154 QKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLV  211 (293)
Q Consensus       154 qK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~  211 (293)
                      ..+++||+|||||++.+         ..|++|+++|+||.+|+||+|.|.|     |..+||++|+.
T Consensus        28 ~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~DdP~~eH~r~~p~C~f-----~~~~kg~~fv~   89 (95)
T 3hl5_A           28 VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKY-----LLEQKGQEYIN   89 (95)
T ss_dssp             SCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHH-----HHHHTCHHHHH
T ss_pred             CCHHHHHhCCCeEcCCCCeEEecCCCCCccCcCCCCCHHHHHHHHCcCCcc-----hHhhccHHHHH
Confidence            78999999999999844         4589999999999999999999999     77888988875

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*

Probab=98.82  E-value=4.3e-10  Score=92.99  Aligned_cols=59  Identities=17%  Similarity=0.071  Sum_probs=51.6

Q ss_pred             HHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhh
Q 022683          148 AMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLV  211 (293)
Q Consensus       148 ~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~  211 (293)
                      |+......+++||+|||||++.+         ..|.+|+++|+||.+|+||+|.|.|     |..+||++|+.
T Consensus        30 WP~~~~~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~F-----v~~~kg~~fi~   97 (122)
T 3mup_A           30 WPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEF-----LIRMKGQEFVD   97 (122)
T ss_dssp             CCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHH-----HHHHHCHHHHH
T ss_pred             CCCcccCCHHHHHHCCCeEeCCCCeEEecCcCCEecCCCCCCCHHHHHHHHCcCCcc-----hhhcCcHHHHH
Confidence            66566789999999999999854         4589999999999999999999999     77888888875

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A

Probab=98.80  E-value=9.1e-10  Score=90.89  Aligned_cols=54  Identities=17%  Similarity=0.151  Sum_probs=47.1

Q ss_pred             cCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhhc
Q 022683          154 QKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVS  212 (293)
Q Consensus       154 qK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~~  212 (293)
                      ..+++||+|||||++.+         ..|++|+++|+||.+|+||+|.|.|     |...|+.+|+..
T Consensus        42 ~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~P~C~F-----v~~~kg~~~v~~  104 (121)
T 1g73_C           42 VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKY-----LLEQKGQEYINN  104 (121)
T ss_dssp             SCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHH-----HHHHHHHHHHHH
T ss_pred             CCHHHHHHcCCCCcCCCCEEEcCcCCCCcCCCCCCCCHHHHHHHHCcCCcc-----hhhccchhhhcc
Confidence            78999999999999844         4599999999999999999999999     666778777653

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D

Probab=98.62  E-value=4.2e-09  Score=81.82  Aligned_cols=49  Identities=10%  Similarity=-0.010  Sum_probs=44.1

Q ss_pred             HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683          147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM  195 (293)
Q Consensus       147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~  195 (293)
                      .|+......+++||+|||||++.+         ..|..|+++|+||.+|++|+|.|.|
T Consensus        21 ~WP~~~~~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~F   78 (85)
T 3m1d_A           21 TFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQLYPSCSF   78 (85)
T ss_dssp             GCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECSCCTTCCHHHHHHHHCTTCHH
T ss_pred             cCCCCCcCCHHHHHHCCCeEeCCCCEEEeCCcCCEecCCCCCCCHHHHHHHHCccCcc
Confidence            366667899999999999999954         4589999999999999999999999

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A

Probab=98.61  E-value=3.2e-09  Score=89.76  Aligned_cols=50  Identities=12%  Similarity=0.063  Sum_probs=44.8

Q ss_pred             HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHH
Q 022683          147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMD  196 (293)
Q Consensus       147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~  196 (293)
                      .|+...+..+++||+|||||++.+         ..|++|+++|+||.+|+||+|.|.|.
T Consensus        53 ~WP~~~~~~p~~LA~AGFyY~g~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~Fv  111 (141)
T 1i4o_C           53 NWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFV  111 (141)
T ss_pred             cCCCCccCCHHHHHHcCCcCcCCCCEEEeccCCCEecCCCCCCCHHHHHHHHCcCCccc
Confidence            477777889999999999999954         55999999999999999999999993

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B

Probab=98.56  E-value=3.4e-09  Score=83.83  Aligned_cols=49  Identities=8%  Similarity=-0.074  Sum_probs=43.8

Q ss_pred             HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683          147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM  195 (293)
Q Consensus       147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~  195 (293)
                      .|+......+++||+|||||++.+         ..|++|+++|+||.+|++|+|.|.|
T Consensus        30 ~WP~~~~~~p~~LA~AGFyytg~~D~V~Cf~C~~~l~~We~~DdP~~eH~r~~P~C~F   87 (94)
T 2poi_A           30 NFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRF   87 (94)
T ss_dssp             TCCTTSSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCTT
T ss_pred             cCCCCccCCHHHHHHcCCCCcCCCCEEEcccCCCEeCCCCCCCCHHHHHHHHCccCcc
Confidence            466667789999999999999954         4599999999999999999999998

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}

Probab=98.51  E-value=5.6e-09  Score=85.01  Aligned_cols=49  Identities=8%  Similarity=-0.074  Sum_probs=43.8

Q ss_pred             HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683          147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM  195 (293)
Q Consensus       147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~  195 (293)
                      .|+...+..+++||+|||||++.+         ..|++|+++|+||.+|+||+|.|.|
T Consensus        47 ~WP~~~~~~p~~LA~AGFyYtg~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~sP~C~F  104 (111)
T 2qra_D           47 NFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRF  104 (111)
T ss_dssp             TCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCTT
T ss_pred             cCCCCccCCHHHHHHcCCCCcCCCCEEEcccCCCEeCCCCCCCCHHHHHHHHCccCcc
Confidence            466667789999999999999954         4599999999999999999999998

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E

Probab=98.48  E-value=1.1e-08  Score=83.83  Aligned_cols=47  Identities=11%  Similarity=-0.102  Sum_probs=41.0

Q ss_pred             HHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683          148 AMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM  195 (293)
Q Consensus       148 ~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~  195 (293)
                      |+.. ...+++||+|||||++.+         ..|++|+++|+||.+|+||+|.|.|
T Consensus        25 WP~~-~~~~~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p~C~F   80 (116)
T 1se0_A           25 WPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPL   80 (116)
T ss_dssp             CCCT-TSCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCTT
T ss_pred             CCCC-cCCHHHHHHcCCcCcCCCCEEEecCcCCEecCCCCCCCHHHHHHHHCccCcc
Confidence            4442 578999999999999854         4599999999999999999999999

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.39  E-value=1e-07  Score=68.81  Aligned_cols=51  Identities=27%  Similarity=0.556  Sum_probs=43.2

Q ss_pred             ccccccccccCcc-eEEeCCCCcccchhhHhc----CCCCCcccccccceEEEcccC
Q 022683          241 KLACKRCNSRNSC-VLLLPCRHLCSCKQCEAF----LVSCPVCNSAKVASMEVFGSD  292 (293)
Q Consensus       241 ~~~C~iC~~~~~~-vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~~~v~v~lS~  292 (293)
                      ...|.||++...+ ++++||+|. +|..|...    -..||+||.++...++.+.++
T Consensus         5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~d   60 (68)
T 1chc_A            5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTIESD   60 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCCCSC
T ss_pred             CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhccccc
Confidence            4579999999887 689999999 99999865    378999999999888776643

>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...

Probab=98.36  E-value=3.5e-08  Score=83.32  Aligned_cols=48  Identities=13%  Similarity=-0.009  Sum_probs=41.4

Q ss_pred             HHhHh--hcCHHHHHHHhhhhhhhH------------HHHhhccccchHHHHHHHHhHHhHH
Q 022683          148 AMNLM--RQKEEDLIQATRRAMELE------------ACLRKAEMESESWQRLARANEAMVM  195 (293)
Q Consensus       148 ~~~~L--rqK~eELa~Ag~~y~ele------------erLr~w~~E~~~Wq~hAr~neac~~  195 (293)
                      |+...  +.++++||+|||||++.+            ..|++|+++|+||.+|+||+|.|.|
T Consensus        25 WP~~~~~~~~p~~LA~AGFyy~g~~~~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~p~C~F   86 (142)
T 2qfa_A           25 WPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAF   86 (142)
T ss_dssp             CSCCSSCSSCHHHHHHTTEEECCBTTBTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCGG
T ss_pred             CCccCCcCCCHHHHHHcCCCcCCCCCCCCEEEcCCCCCEecccCCCCCHHHHHHHHCcCCcc
Confidence            55443  367999999999999853            4599999999999999999999999

>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}

Probab=98.33  E-value=4.1e-08  Score=82.48  Aligned_cols=47  Identities=11%  Similarity=-0.102  Sum_probs=41.0

Q ss_pred             HHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683          148 AMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM  195 (293)
Q Consensus       148 ~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~  195 (293)
                      |+.. ...+++||+|||||++.+         ..|+.|+++|+||.+|+||+|.|.|
T Consensus        47 WP~~-~~~p~~LA~AGFYYtG~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~sP~C~F  102 (136)
T 3siq_A           47 WPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPL  102 (136)
T ss_dssp             CCCT-TSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCTT
T ss_pred             CCCC-cCCHHHHHHCCCeEcCCCCeEEEeccCCEecCCCCCCCHHHHHHHHCcCCcc
Confidence            5443 368999999999999954         4589999999999999999999999

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.33  E-value=6.7e-08  Score=70.27  Aligned_cols=50  Identities=28%  Similarity=0.638  Sum_probs=43.0

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccceEEEcc
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASMEVFG  290 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~v~l  290 (293)
                      .+...|.||++...+ +++||+|. +|..|....    ..||+||.++.....+|.
T Consensus        13 ~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   66 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESSG   66 (70)
T ss_dssp             CCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred             CCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence            345689999999888 88999999 999999864    689999999998777665

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.29  E-value=4.2e-07  Score=88.02  Aligned_cols=52  Identities=27%  Similarity=0.589  Sum_probs=46.7

Q ss_pred             ccccccccccCcceEEeCCCCcccchhhHhc-----CCCCCcccccccceEEEcccCC
Q 022683          241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAF-----LVSCPVCNSAKVASMEVFGSDF  293 (293)
Q Consensus       241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~-----l~~CPvCr~~i~~~v~v~lS~~  293 (293)
                      ...|.||++...+.+++||||.. |..|...     ...||+||.++.....|.+.+|
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~pf  388 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDPF  388 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEECSCCTT
T ss_pred             CCCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeEecCCC
Confidence            36899999999999999999995 9999863     4799999999999999988876

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.26  E-value=4.4e-07  Score=74.90  Aligned_cols=47  Identities=23%  Similarity=0.539  Sum_probs=39.8

Q ss_pred             hccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccceEE
Q 022683          240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASME  287 (293)
Q Consensus       240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~  287 (293)
                      +...|.||++.-.+.+++||||. +|..|....    ..||+||.++.....
T Consensus        52 ~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~  102 (138)
T 4ayc_A           52 NELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKTY  102 (138)
T ss_dssp             HHSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEEE
T ss_pred             ccCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCCC
Confidence            45679999999999999999995 999997653    689999999987543

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=4.4e-07  Score=66.36  Aligned_cols=44  Identities=23%  Similarity=0.516  Sum_probs=38.6

Q ss_pred             hccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683          240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      +...|.||++...+.+++||+|. +|..|....    ..||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           14 TVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence            34679999999999999999999 999998764    689999999864

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.17  E-value=5.2e-07  Score=65.77  Aligned_cols=46  Identities=20%  Similarity=0.542  Sum_probs=39.1

Q ss_pred             hhhccccccccccCcceEEeCCCCcccchhhHhcC-------CCCCcccccccc
Q 022683          238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-------VSCPVCNSAKVA  284 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-------~~CPvCr~~i~~  284 (293)
                      ..+...|.||++...+.+++||+|. +|..|....       ..||+||.++..
T Consensus        17 ~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           17 LQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             CccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            3456789999999999888999999 999998754       279999998864

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.17  E-value=5e-07  Score=63.86  Aligned_cols=49  Identities=22%  Similarity=0.503  Sum_probs=38.7

Q ss_pred             ccccccccccCcc-------eEEeCCCCcccchhhHhcC----CCCCccccccc--ceEEEcc
Q 022683          241 KLACKRCNSRNSC-------VLLLPCRHLCSCKQCEAFL----VSCPVCNSAKV--ASMEVFG  290 (293)
Q Consensus       241 ~~~C~iC~~~~~~-------vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~--~~v~v~l  290 (293)
                      ...|.||++.-.+       ++++||||. +|..|....    ..||+||.++.  ..+++|+
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l   64 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI   64 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence            4579999987554       388899999 899998753    68999999987  4566654

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.12  E-value=1.1e-06  Score=60.54  Aligned_cols=43  Identities=26%  Similarity=0.646  Sum_probs=35.7

Q ss_pred             ccccccccccCcc----eEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683          241 KLACKRCNSRNSC----VLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       241 ~~~C~iC~~~~~~----vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      ...|.||++.-.+    ++++||+|. +|..|....    ..||+||.++.+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g   55 (55)
T 2ecm_A            5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG   55 (55)
T ss_dssp             CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred             CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            4579999987544    889999996 999998764    799999998864

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.06  E-value=1.1e-06  Score=65.63  Aligned_cols=46  Identities=20%  Similarity=0.496  Sum_probs=39.1

Q ss_pred             hccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccceE
Q 022683          240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASM  286 (293)
Q Consensus       240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v  286 (293)
                      +...|.||++.-.+.+++||+|. +|..|....    ..||+||.++...+
T Consensus        14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   63 (81)
T 2csy_A           14 IPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF   63 (81)
T ss_dssp             CCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred             CCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence            45689999999999899999998 699998654    68999999987543

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.05  E-value=7.6e-07  Score=64.44  Aligned_cols=44  Identities=25%  Similarity=0.563  Sum_probs=35.9

Q ss_pred             hccccccccccCcce-------EEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683          240 RKLACKRCNSRNSCV-------LLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       240 ~~~~C~iC~~~~~~v-------vllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      +...|.||++.-.+.       +++||||. +|..|....    ..||+||.++..
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence            356799999875553       88999997 999998653    699999999874

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.01  E-value=1.2e-06  Score=63.26  Aligned_cols=46  Identities=30%  Similarity=0.562  Sum_probs=36.7

Q ss_pred             hcccccccccc---CcceEEeCCCCcccchhhHhcC----CCCCcccccccceE
Q 022683          240 RKLACKRCNSR---NSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASM  286 (293)
Q Consensus       240 ~~~~C~iC~~~---~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v  286 (293)
                      ....|.||++.   ...++.+||+|. +|..|....    ..||+||..+...+
T Consensus        13 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           13 TEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             CCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            34679999664   356788999999 899998753    68999999987654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.00  E-value=1.5e-06  Score=62.33  Aligned_cols=45  Identities=24%  Similarity=0.549  Sum_probs=36.5

Q ss_pred             hhccccccccccCcce-------EEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683          239 RRKLACKRCNSRNSCV-------LLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~v-------vllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      .+...|.||++.-.+.       +++||+|. +|..|....    ..||+||.+++.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence            3456899999976554       88999996 899998754    689999998864

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.99  E-value=1.6e-06  Score=65.15  Aligned_cols=45  Identities=36%  Similarity=0.702  Sum_probs=37.5

Q ss_pred             hhccccccccccCcc----eEEeCCCCcccchhhHhcC-------CCCCcccccccc
Q 022683          239 RRKLACKRCNSRNSC----VLLLPCRHLCSCKQCEAFL-------VSCPVCNSAKVA  284 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~----vvllPC~Hl~lC~~C~~~l-------~~CPvCr~~i~~  284 (293)
                      .+...|.||++.-.+    .+++||||. +|..|....       ..||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             cCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            445689999998777    888999997 899998754       589999998754

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.98  E-value=1.3e-06  Score=61.56  Aligned_cols=44  Identities=32%  Similarity=0.838  Sum_probs=37.5

Q ss_pred             hccccccccccCcceEEeCCCCcccchhhHhcC-CCCCcccccccc
Q 022683          240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-VSCPVCNSAKVA  284 (293)
Q Consensus       240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-~~CPvCr~~i~~  284 (293)
                      +...|.||++.-.+-+++||+|. +|..|.... ..||+||..+..
T Consensus         5 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T 1bor_A            5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred             cCCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence            45689999999889899999998 899998654 589999998763

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.98  E-value=2.6e-06  Score=63.17  Aligned_cols=45  Identities=22%  Similarity=0.541  Sum_probs=38.5

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHhc----------CCCCCcccccccc
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF----------LVSCPVCNSAKVA  284 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~----------l~~CPvCr~~i~~  284 (293)
                      .+...|.||++...+-+++||+|. +|..|...          ...||+||.++..
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             ccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            445689999999888889999998 89999865          4689999999874

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=97.98  E-value=1.5e-06  Score=64.13  Aligned_cols=45  Identities=29%  Similarity=0.612  Sum_probs=37.9

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHhc-----------CCCCCcccccccc
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF-----------LVSCPVCNSAKVA  284 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~-----------l~~CPvCr~~i~~  284 (293)
                      .+...|.||++.-.+.+.+||||. +|..|...           ...||+||.++..
T Consensus        10 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           10 QEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             ccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            446789999999888788899997 89999875           3589999998864

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.97  E-value=1.8e-06  Score=63.18  Aligned_cols=47  Identities=23%  Similarity=0.451  Sum_probs=38.6

Q ss_pred             hhhccccccccccCcceEEe-CCCCcccchhhHhc----CCCCCcccccccce
Q 022683          238 ERRKLACKRCNSRNSCVLLL-PCRHLCSCKQCEAF----LVSCPVCNSAKVAS  285 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvll-PC~Hl~lC~~C~~~----l~~CPvCr~~i~~~  285 (293)
                      ..+...|.||++...+.+.+ ||+|. +|..|...    -..||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           12 LTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             CCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             cCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence            34567899999998887766 99998 79999854    36999999998754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=97.97  E-value=3.7e-06  Score=57.97  Aligned_cols=42  Identities=26%  Similarity=0.621  Sum_probs=34.6

Q ss_pred             ccccccccccCcc---eEEeC-CCCcccchhhHhcC----CCCCccccccc
Q 022683          241 KLACKRCNSRNSC---VLLLP-CRHLCSCKQCEAFL----VSCPVCNSAKV  283 (293)
Q Consensus       241 ~~~C~iC~~~~~~---vvllP-C~Hl~lC~~C~~~l----~~CPvCr~~i~  283 (293)
                      ...|.||++.-..   ++.+| |+|. +|..|....    ..||+||.++.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            5 GVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence            4579999988655   77788 9998 999998753    68999998864

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.97  E-value=2e-06  Score=63.76  Aligned_cols=46  Identities=28%  Similarity=0.576  Sum_probs=38.9

Q ss_pred             hhhccccccccccCcceEEeCCCCcccchhhHhc----------CCCCCcccccccc
Q 022683          238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF----------LVSCPVCNSAKVA  284 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~----------l~~CPvCr~~i~~  284 (293)
                      ..+...|.||++...+.+++||+|. +|..|...          ...||+||..+..
T Consensus        16 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             ccCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            3456789999999888888899998 89999865          4689999998874

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.92  E-value=2.8e-06  Score=62.83  Aligned_cols=46  Identities=33%  Similarity=0.659  Sum_probs=35.9

Q ss_pred             hhcccccccccc---CcceEEeCCCCcccchhhHhcC----CCCCcccccccce
Q 022683          239 RRKLACKRCNSR---NSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVAS  285 (293)
Q Consensus       239 ~~~~~C~iC~~~---~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~  285 (293)
                      .+...|.||++.   ...++.+||+|. +|..|....    ..||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ   65 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence            345689999664   456677899997 899998643    6899999998753

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=97.89  E-value=5.3e-06  Score=66.87  Aligned_cols=48  Identities=23%  Similarity=0.471  Sum_probs=40.3

Q ss_pred             HhhhhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683          236 KEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA  284 (293)
Q Consensus       236 ~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~  284 (293)
                      ....+...|.||++.-.+-+.+||||. +|..|....     ..||+||.++..
T Consensus        47 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           47 SKVEETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHHHHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             HhCccCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            345667899999999999888999998 899998542     489999999875

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.88  E-value=6e-06  Score=59.11  Aligned_cols=43  Identities=28%  Similarity=0.743  Sum_probs=33.3

Q ss_pred             ccccccccc----cCcc-eEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683          241 KLACKRCNS----RNSC-VLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA  284 (293)
Q Consensus       241 ~~~C~iC~~----~~~~-vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~  284 (293)
                      +..|.||++    ++.. ++++||||. +|..|....     ..||+||.++..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            457999999    2322 256899998 899998765     579999999864

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=97.85  E-value=9.2e-06  Score=62.86  Aligned_cols=48  Identities=23%  Similarity=0.536  Sum_probs=39.6

Q ss_pred             HhhhhccccccccccCcceEEe-CCCCcccchhhHhcC----CCCCcccccccc
Q 022683          236 KEERRKLACKRCNSRNSCVLLL-PCRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       236 ~~~~~~~~C~iC~~~~~~vvll-PC~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      +...+...|.||++.-.+-+.+ ||||. +|..|....    ..||+||..+..
T Consensus        17 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           17 KTIDDLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHHHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             HhCCCCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            4456678999999998887777 99998 899997653    589999998874

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.84  E-value=5.1e-06  Score=61.13  Aligned_cols=44  Identities=23%  Similarity=0.584  Sum_probs=35.2

Q ss_pred             hcccccccccc---CcceEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683          240 RKLACKRCNSR---NSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       240 ~~~~C~iC~~~---~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      +...|.||++.   ...++.+||+|. +|..|....    ..||+||..+..
T Consensus        22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            34579999965   344688899998 999998753    689999998864

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.84  E-value=6.9e-06  Score=64.42  Aligned_cols=47  Identities=26%  Similarity=0.555  Sum_probs=39.0

Q ss_pred             hhhhccccccccccCcceEEeCCCCcccchhhHhcC-------CCCCcccccccc
Q 022683          237 EERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-------VSCPVCNSAKVA  284 (293)
Q Consensus       237 ~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-------~~CPvCr~~i~~  284 (293)
                      ...+...|.||++.-.+.+.+||||. +|..|....       ..||+||.++..
T Consensus        17 ~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           17 AMQKILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HHHHHTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             hccCCCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            45567799999999888888899997 899997653       279999998874

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.82  E-value=3.9e-06  Score=61.44  Aligned_cols=48  Identities=21%  Similarity=0.477  Sum_probs=37.6

Q ss_pred             hccccccccccC---cceEEeCCCCcccchhhHhcC----CCCCcccccccceEEE
Q 022683          240 RKLACKRCNSRN---SCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASMEV  288 (293)
Q Consensus       240 ~~~~C~iC~~~~---~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~v  288 (293)
                      ....|.||++.-   ..+..+||+|. +|..|....    ..||+||.++.....+
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQL   68 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred             CCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCccccccccc
Confidence            456799998873   45667799998 999998653    6899999998775443

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=97.81  E-value=9e-06  Score=63.50  Aligned_cols=49  Identities=20%  Similarity=0.440  Sum_probs=41.2

Q ss_pred             HHhhhhccccccccccCcceEE-eCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683          235 LKEERRKLACKRCNSRNSCVLL-LPCRHLCSCKQCEAFL-----VSCPVCNSAKVA  284 (293)
Q Consensus       235 ~~~~~~~~~C~iC~~~~~~vvl-lPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~  284 (293)
                      .....+...|.||++.-.+-+. +||||. +|..|-...     ..||+||.++..
T Consensus        16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           16 VESIAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HHHHHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cccCCCCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            3456778899999999999888 999999 899998653     589999998753

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.81  E-value=4e-06  Score=60.23  Aligned_cols=45  Identities=27%  Similarity=0.587  Sum_probs=37.8

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA  284 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~  284 (293)
                      .+...|.||++.-.+.+.+||||. +|..|....     ..||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            446789999998888777899999 899998742     589999998864

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=97.79  E-value=5.3e-06  Score=63.75  Aligned_cols=44  Identities=30%  Similarity=0.639  Sum_probs=35.4

Q ss_pred             hccccccccccCcc---eEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683          240 RKLACKRCNSRNSC---VLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       240 ~~~~C~iC~~~~~~---vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      +...|.||++.-..   ++.+||+|. +|..|....    ..||+||..+..
T Consensus        39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence            45679999876544   788999996 999998653    689999998764

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=97.78  E-value=1.4e-05  Score=62.90  Aligned_cols=47  Identities=26%  Similarity=0.509  Sum_probs=39.9

Q ss_pred             hhhhccccccccccCcceEEe-CCCCcccchhhHhcC----CCCCcccccccc
Q 022683          237 EERRKLACKRCNSRNSCVLLL-PCRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       237 ~~~~~~~C~iC~~~~~~vvll-PC~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      ...+...|.||++.-.+-+.+ ||||. +|..|....    ..||+||..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             HHGGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             ccCCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence            456678999999998888877 99998 799998654    689999999875

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=97.78  E-value=9.9e-06  Score=68.18  Aligned_cols=47  Identities=23%  Similarity=0.468  Sum_probs=39.6

Q ss_pred             hhhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccce
Q 022683          238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVAS  285 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~~  285 (293)
                      ..+...|.||++.-.+-+.+||||. +|..|....     ..||+||.++...
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CccCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            4456789999999999999999997 799998653     3799999998754

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=97.76  E-value=3.2e-06  Score=64.00  Aligned_cols=49  Identities=20%  Similarity=0.482  Sum_probs=38.1

Q ss_pred             hhccccccccccC--cceEEeC--CCCcccchhhHhcC-----CCCCcccccccceEEE
Q 022683          239 RRKLACKRCNSRN--SCVLLLP--CRHLCSCKQCEAFL-----VSCPVCNSAKVASMEV  288 (293)
Q Consensus       239 ~~~~~C~iC~~~~--~~vvllP--C~Hl~lC~~C~~~l-----~~CPvCr~~i~~~v~v  288 (293)
                      .+...|.||++.-  .++.++|  |||. +|..|...+     ..||+||.++.....+
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~   66 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPAV   66 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred             ccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence            3456899999965  3566777  9998 999998765     4899999998865433

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=97.75  E-value=1.1e-05  Score=64.11  Aligned_cols=44  Identities=27%  Similarity=0.609  Sum_probs=37.7

Q ss_pred             hccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683          240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA  284 (293)
Q Consensus       240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~  284 (293)
                      +...|.||++.-.+-+.+||||. +|..|....     ..||+||..+..
T Consensus        14 ~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           14 SECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            35689999999888888899998 899998764     489999998864

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=97.74  E-value=1e-05  Score=59.68  Aligned_cols=45  Identities=24%  Similarity=0.659  Sum_probs=37.6

Q ss_pred             hhhccccccccccCcceEEeC-CCCcccchhhHhcC------CCCCccccccc
Q 022683          238 ERRKLACKRCNSRNSCVLLLP-CRHLCSCKQCEAFL------VSCPVCNSAKV  283 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllP-C~Hl~lC~~C~~~l------~~CPvCr~~i~  283 (293)
                      ..+...|.||++.-.+-+.+| |+|. +|..|....      ..||+||.++.
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           12 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             SCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            345678999999999989999 9997 899998653      48999999753

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.71  E-value=2.2e-05  Score=62.74  Aligned_cols=48  Identities=29%  Similarity=0.658  Sum_probs=41.1

Q ss_pred             HHhhhhccccccccccCcceEEe-CCCCcccchhhHhcC--CCCCccccccc
Q 022683          235 LKEERRKLACKRCNSRNSCVLLL-PCRHLCSCKQCEAFL--VSCPVCNSAKV  283 (293)
Q Consensus       235 ~~~~~~~~~C~iC~~~~~~vvll-PC~Hl~lC~~C~~~l--~~CPvCr~~i~  283 (293)
                      .....+...|.||++.-.+-+.+ ||||. +|..|....  ..||+||.++.
T Consensus        16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~   66 (117)
T 1jm7_B           16 LDRLEKLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW   66 (117)
T ss_dssp             HHHHHHTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred             HHhchhCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence            34567788999999999888888 99998 799998776  57999999875

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=97.66  E-value=1.5e-05  Score=67.24  Aligned_cols=45  Identities=24%  Similarity=0.521  Sum_probs=37.4

Q ss_pred             hhhccccccccccCcceEEe-CCCCcccchhhHhcC-----CCCCccccccc
Q 022683          238 ERRKLACKRCNSRNSCVLLL-PCRHLCSCKQCEAFL-----VSCPVCNSAKV  283 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvll-PC~Hl~lC~~C~~~l-----~~CPvCr~~i~  283 (293)
                      ..+...|.||++.-.+.+.+ ||||. +|..|....     ..||+||.++.
T Consensus        51 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           51 LHSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV  101 (165)
T ss_dssp             CHHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence            45567899999998887776 99997 899998653     57999999885

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=97.60  E-value=1.6e-05  Score=60.54  Aligned_cols=44  Identities=23%  Similarity=0.649  Sum_probs=37.1

Q ss_pred             hhhccccccccccCcceEEeC-CCCcccchhhHhcC------CCCCcccccc
Q 022683          238 ERRKLACKRCNSRNSCVLLLP-CRHLCSCKQCEAFL------VSCPVCNSAK  282 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllP-C~Hl~lC~~C~~~l------~~CPvCr~~i  282 (293)
                      ..+...|.||++.-.+-+.+| |||. +|..|....      ..||+||.++
T Consensus        10 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A           10 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             CCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            345678999999988888999 9999 899997643      5899999986

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.58  E-value=1.3e-05  Score=55.52  Aligned_cols=39  Identities=28%  Similarity=0.697  Sum_probs=33.2

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHhcC-------CCCCcc
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-------VSCPVC  278 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-------~~CPvC  278 (293)
                      .+...|.||++...+.+++||+|. +|..|....       ..||+|
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence            446789999999888888999999 899997643       689998

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=97.55  E-value=2.4e-05  Score=57.74  Aligned_cols=45  Identities=7%  Similarity=0.063  Sum_probs=37.8

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHhc-----CCCCCcccccccc
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF-----LVSCPVCNSAKVA  284 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~-----l~~CPvCr~~i~~  284 (293)
                      .+...|.||++--.+-+.+||||. +|..|-..     -..||+||.++..
T Consensus         6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            346789999999888888899999 89999754     3579999999864

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=97.54  E-value=3.6e-05  Score=61.10  Aligned_cols=46  Identities=22%  Similarity=0.501  Sum_probs=39.0

Q ss_pred             hhhccccccccccCcceEEeCCCCcccchhhHhc-----CCCCCcccccccc
Q 022683          238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF-----LVSCPVCNSAKVA  284 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~-----l~~CPvCr~~i~~  284 (293)
                      ..+...|.||++.-.+.+.+||||. +|..|...     -..||+||.++..
T Consensus        20 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           20 FVKSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             ccCCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            4456789999999999888999999 89999764     3589999999865

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.49  E-value=2.6e-05  Score=55.26  Aligned_cols=40  Identities=23%  Similarity=0.629  Sum_probs=33.7

Q ss_pred             hhhccccccccccCcceEEeCCCCcccchhhHhcC-------CCCCcc
Q 022683          238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-------VSCPVC  278 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-------~~CPvC  278 (293)
                      ..+...|.||++.-.+.+.+||||. +|..|....       ..||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence            3456789999999999888999999 899997643       479998

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=97.49  E-value=3.8e-05  Score=61.46  Aligned_cols=46  Identities=28%  Similarity=0.471  Sum_probs=38.9

Q ss_pred             hhhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683          238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA  284 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~  284 (293)
                      ..+...|.||++.-.+-+.+||||. +|..|....     ..||+||.++..
T Consensus        15 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            3456789999999888888999998 899998653     499999999875

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.41  E-value=5e-05  Score=60.46  Aligned_cols=44  Identities=25%  Similarity=0.563  Sum_probs=35.8

Q ss_pred             hccccccccccCcce-------EEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683          240 RKLACKRCNSRNSCV-------LLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       240 ~~~~C~iC~~~~~~v-------vllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      +...|.||++.-.+-       +.+||||. +|..|....    ..||+||..+..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence            456899999876553       88999996 899998653    689999999874

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.30  E-value=8.1e-05  Score=59.25  Aligned_cols=50  Identities=22%  Similarity=0.503  Sum_probs=39.2

Q ss_pred             hccccccccccCcce-------EEeCCCCcccchhhHhc----CCCCCccccccc--ceEEEcc
Q 022683          240 RKLACKRCNSRNSCV-------LLLPCRHLCSCKQCEAF----LVSCPVCNSAKV--ASMEVFG  290 (293)
Q Consensus       240 ~~~~C~iC~~~~~~v-------vllPC~Hl~lC~~C~~~----l~~CPvCr~~i~--~~v~v~l  290 (293)
                      +...|.||++.-...       +.+||+|. .|..|...    ...||+||.++.  ..+++|+
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~  133 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI  133 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred             CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence            356799999875553       88899999 99999864    379999999976  4556664

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=97.27  E-value=6.1e-05  Score=59.42  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=32.0

Q ss_pred             cccccccccC------------------cceEEeCCCCcccchhhHhc---------CCCCCcccccccc
Q 022683          242 LACKRCNSRN------------------SCVLLLPCRHLCSCKQCEAF---------LVSCPVCNSAKVA  284 (293)
Q Consensus       242 ~~C~iC~~~~------------------~~vvllPC~Hl~lC~~C~~~---------l~~CPvCr~~i~~  284 (293)
                      ..|.||++.-                  ..+.++||+|. +|..|-..         -..||+||..+..
T Consensus        26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            4799998764                  23448899997 99999653         2589999998753

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.14  E-value=0.00016  Score=54.30  Aligned_cols=30  Identities=27%  Similarity=0.554  Sum_probs=23.1

Q ss_pred             eEEeCCCCcccchhhHhc----CCCCCcccccccc
Q 022683          254 VLLLPCRHLCSCKQCEAF----LVSCPVCNSAKVA  284 (293)
Q Consensus       254 vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~~  284 (293)
                      +++.+|+|. ++..|-..    -..||+||.++..
T Consensus        43 ~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           43 VVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             EEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             EEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence            344459999 99999864    2689999998753

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=96.99  E-value=0.00011  Score=61.17  Aligned_cols=45  Identities=22%  Similarity=0.486  Sum_probs=37.9

Q ss_pred             hhhhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccc
Q 022683          237 EERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAK  282 (293)
Q Consensus       237 ~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i  282 (293)
                      ...+...|.||++--.+-+.+||||. +|..|-...     ..||+||.++
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence            45567899999998888788899998 899998764     4899999975

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=96.93  E-value=0.00093  Score=58.22  Aligned_cols=45  Identities=13%  Similarity=-0.135  Sum_probs=36.5

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA  284 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~  284 (293)
                      .+...|.||++--.+=|.+||||. .|..|-...     ..||+|+.+.+.
T Consensus       104 p~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          104 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            346789999999889888899997 899995432     369999998764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.87  E-value=0.00039  Score=58.68  Aligned_cols=46  Identities=28%  Similarity=0.471  Sum_probs=39.2

Q ss_pred             hhhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683          238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA  284 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~  284 (293)
                      ..+...|.||++--.+-+.+||||. +|..|....     ..||+||.++..
T Consensus        15 ~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence            3456789999999888888999998 899998764     499999999876

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=96.58  E-value=0.00048  Score=52.36  Aligned_cols=46  Identities=7%  Similarity=-0.068  Sum_probs=38.8

Q ss_pred             hhhccccccccccCcceEEeCCCCcccchhhHhc----CCCCCcccccccc
Q 022683          238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF----LVSCPVCNSAKVA  284 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~~  284 (293)
                      ..+...|.||++--.+=|.+||||. .|..|-..    -..||+|+.+++.
T Consensus        11 ~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           11 APDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CchheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            4457899999999999999999998 89999654    3699999998764

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=96.57  E-value=0.0021  Score=51.28  Aligned_cols=45  Identities=22%  Similarity=0.614  Sum_probs=32.7

Q ss_pred             cccccccCcc-eEEeCCCCcccchhhHhc-----CCCCCcccccccceEEEc
Q 022683          244 CKRCNSRNSC-VLLLPCRHLCSCKQCEAF-----LVSCPVCNSAKVASMEVF  289 (293)
Q Consensus       244 C~iC~~~~~~-vvllPC~Hl~lC~~C~~~-----l~~CPvCr~~i~~~v~v~  289 (293)
                      |.+|.---.. .-++||.| ++|.+|+..     .+.||+|+.+|...=++.
T Consensus         4 C~~C~~Pi~iygRmIPCkH-vFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~   54 (101)
T 3vk6_A            4 CDKCGLPIKVYGRMIPCKH-VFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT   54 (101)
T ss_dssp             CTTTCSBCSEEEEEETTCC-EEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred             cCccCCCeEEEeeeccccc-cHHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence            5556544333 23789999 699999943     479999999998765543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.51  E-value=0.001  Score=59.12  Aligned_cols=44  Identities=14%  Similarity=-0.121  Sum_probs=36.9

Q ss_pred             hccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683          240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA  284 (293)
Q Consensus       240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~  284 (293)
                      +...|.||++--.+=|.+||||. .|..|-...     ..||+||.+++.
T Consensus       207 ~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          207 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             cccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            45689999999999999999998 899996532     359999998863

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=96.45  E-value=0.0013  Score=52.36  Aligned_cols=30  Identities=23%  Similarity=0.258  Sum_probs=24.7

Q ss_pred             ceEEeCCCCcccchhhHhc----CCCCCccccccc
Q 022683          253 CVLLLPCRHLCSCKQCEAF----LVSCPVCNSAKV  283 (293)
Q Consensus       253 ~vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~  283 (293)
                      .++++||+|. ++..|-..    -..||+||....
T Consensus        67 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           67 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             eEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence            3678899998 99999875    368999999853

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=96.20  E-value=0.002  Score=50.51  Aligned_cols=46  Identities=7%  Similarity=-0.052  Sum_probs=39.0

Q ss_pred             hhhccccccccccCcceEEeCCCCcccchhhHhc----CCCCCcccccccc
Q 022683          238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF----LVSCPVCNSAKVA  284 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~~  284 (293)
                      ..+...|.||++--.+=|.+||||. .|..|-..    -..||+|+.+++.
T Consensus        26 ~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           26 APDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             CSTTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             CcHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence            4567899999999999999999998 89999654    2689999998764

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=96.16  E-value=0.0023  Score=50.01  Aligned_cols=46  Identities=11%  Similarity=-0.050  Sum_probs=38.5

Q ss_pred             hhhccccccccccCcceEEeCCC-CcccchhhHhcC----CCCCcccccccc
Q 022683          238 ERRKLACKRCNSRNSCVLLLPCR-HLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllPC~-Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      ..+...|.||++--.+=|.+||| |. .|..|-...    ..||+||.+++.
T Consensus        19 ~p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           19 ACDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             CcHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            45578999999999998999999 87 899996542    689999998764

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=95.56  E-value=0.0022  Score=52.22  Aligned_cols=29  Identities=24%  Similarity=0.306  Sum_probs=0.0

Q ss_pred             ceEEeCCCCcccchhhHhcC----CCCCcccccc
Q 022683          253 CVLLLPCRHLCSCKQCEAFL----VSCPVCNSAK  282 (293)
Q Consensus       253 ~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i  282 (293)
                      .++++||+|. ++..|-..-    ..||+||.+.
T Consensus        78 ~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~  110 (117)
T 4a0k_B           78 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW  110 (117)
T ss_dssp             ----------------------------------
T ss_pred             ccccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence            3456799998 899998763    6899999975

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.34  E-value=0.0078  Score=45.46  Aligned_cols=43  Identities=21%  Similarity=0.608  Sum_probs=32.1

Q ss_pred             ccccccccccC--cceEEeCCC-----CcccchhhHhcC------CCCCcccccccc
Q 022683          241 KLACKRCNSRN--SCVLLLPCR-----HLCSCKQCEAFL------VSCPVCNSAKVA  284 (293)
Q Consensus       241 ~~~C~iC~~~~--~~vvllPC~-----Hl~lC~~C~~~l------~~CPvCr~~i~~  284 (293)
                      ...|.||++..  -+.+++||+     |. +-..|-..-      ..||+||..+..
T Consensus        15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           15 QDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             SCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            45799999642  345678997     87 788887643      489999998764

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=94.60  E-value=0.0074  Score=46.01  Aligned_cols=40  Identities=25%  Similarity=0.670  Sum_probs=29.4

Q ss_pred             ccccccccccCcc--e-EEeCCCCcccchhhHhcC------------CCCCc--cccc
Q 022683          241 KLACKRCNSRNSC--V-LLLPCRHLCSCKQCEAFL------------VSCPV--CNSA  281 (293)
Q Consensus       241 ~~~C~iC~~~~~~--v-vllPC~Hl~lC~~C~~~l------------~~CPv--Cr~~  281 (293)
                      ...|.||++.-..  + .+.||+|. .|..|....            -.||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            4579999986433  2 23489998 999995431            37999  9987

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.27  E-value=0.02  Score=43.95  Aligned_cols=41  Identities=15%  Similarity=0.315  Sum_probs=33.4

Q ss_pred             hccccccccccCcceEEeC-CCCcccchhhHhcC----------CCCCc--cccc
Q 022683          240 RKLACKRCNSRNSCVLLLP-CRHLCSCKQCEAFL----------VSCPV--CNSA  281 (293)
Q Consensus       240 ~~~~C~iC~~~~~~vvllP-C~Hl~lC~~C~~~l----------~~CPv--Cr~~  281 (293)
                      +...|.||++--.+=|.+| |||. .|+.|-...          ..||+  |+..
T Consensus         6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            4578999999999988887 9998 899995432          38999  9854

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=90.27  E-value=0.091  Score=48.40  Aligned_cols=45  Identities=18%  Similarity=0.353  Sum_probs=35.6

Q ss_pred             hhhccccccccccCcceEE-eCCCCcccchhhHhcC------CCCCc--cccccc
Q 022683          238 ERRKLACKRCNSRNSCVLL-LPCRHLCSCKQCEAFL------VSCPV--CNSAKV  283 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvl-lPC~Hl~lC~~C~~~l------~~CPv--Cr~~i~  283 (293)
                      ......|.||++.-.+=|. ..|||. .|+.|-...      ..||+  |+..+.
T Consensus       178 ~~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          178 GKIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             SBCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             CceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            3456799999998888665 599996 899997653      36999  998764

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=89.91  E-value=0.082  Score=37.65  Aligned_cols=44  Identities=16%  Similarity=0.321  Sum_probs=28.7

Q ss_pred             hccccccccccCcceEEeCCCCcc----cchhhHhc------CCCCCccccccc
Q 022683          240 RKLACKRCNSRNSCVLLLPCRHLC----SCKQCEAF------LVSCPVCNSAKV  283 (293)
Q Consensus       240 ~~~~C~iC~~~~~~vvllPC~Hl~----lC~~C~~~------l~~CPvCr~~i~  283 (293)
                      +...|.||++....-++.||.+.-    +=..|...      -..||+|+..+.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            345799999876665679986421    22234332      268999998764

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=84.12  E-value=0.53  Score=33.35  Aligned_cols=42  Identities=14%  Similarity=0.081  Sum_probs=35.0

Q ss_pred             cccccccccCcceEEe-CCCCcccchhhHhcC----CCCCcccccccc
Q 022683          242 LACKRCNSRNSCVLLL-PCRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       242 ~~C~iC~~~~~~vvll-PC~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      ..|.||++--.+=++. ||||. .++.|-...    .+||+++.+.+.
T Consensus         4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~   50 (61)
T 2bay_A            4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI   50 (61)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence            5799999988888888 99998 888887654    579999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d3d9ta1	87	2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}	98.9
d2i3ha1	90	BIR-containing protein 7 (ML-IAP, livin) {Human (H	98.9
d2vsla1	96	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	98.86
d1jd5a_	105	BIR domains of DIAP1 {Fruit fly (Drosophila melano	98.79
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1i3oe_	111	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	98.51
d1se0a_	97	BIR domains of DIAP1 {Fruit fly (Drosophila melano	98.31
d2qfaa1	137	Anti-apoptotic protein survivin {Human (Homo sapie	98.24
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.15
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.12
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.03
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	97.99
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	97.83
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	97.77
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	97.7
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	97.67
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.31
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	97.16
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	97.01
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	96.81
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	96.72
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	96.71
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	96.24
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	94.89

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: 2MIHB/C-IAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=6.6e-11  Score=90.51  Aligned_cols=60  Identities=17%  Similarity=0.058  Sum_probs=52.6

Q ss_pred             HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhh
Q 022683          147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLV  211 (293)
Q Consensus       147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~  211 (293)
                      .|+..++..+++||+|||||+|..         ..|.+|+.+|+||.+|++|+|.|.+     |..+|+..++.
T Consensus        13 ~Wp~~~~~~~~~LA~aGFyytg~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f-----v~~~k~~~fv~   81 (87)
T d3d9ta1          13 YWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEF-----LIRMKGQEFVD   81 (87)
T ss_dssp             GCCTTSSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTBHH-----HHHHHCHHHHH
T ss_pred             cCCCCCCcCHHHHHHcCCEECCCCCEEEeCcCCCEecCcCCCCcchHHHHHHCcCCch-----hHhhCCHHHHH
Confidence            467778889999999999999965         4489999999999999999999999     77788877764

>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR-containing protein 7 (ML-IAP, livin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.7e-11  Score=90.66  Aligned_cols=60  Identities=13%  Similarity=-0.009  Sum_probs=52.4

Q ss_pred             HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhh
Q 022683          147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLV  211 (293)
Q Consensus       147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~  211 (293)
                      .|+..++..+++||+|||||+|.+         ..|.+|+.+|+||++|++|+|.|.+     |..+|+..|+.
T Consensus        19 ~Wp~~~~~~~~~LA~aGFyytg~~D~v~C~~C~~~l~~W~~~Ddp~~eH~r~~p~C~f-----v~~~k~~~fv~   87 (90)
T d2i3ha1          19 DWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQF-----LLRSKGQEYIN   87 (90)
T ss_dssp             TCSCTTTSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHH-----HHHHHCHHHHH
T ss_pred             hCCCCCCCCHHHHHhcCCEECCCCCEEEeccCCCEeCCCCCCCCHHHHHHHHCcCCcc-----hHHhcCHHHHh
Confidence            366678899999999999999955         4489999999999999999999999     77788877764

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.1e-10  Score=89.26  Aligned_cols=53  Identities=17%  Similarity=0.148  Sum_probs=46.9

Q ss_pred             cCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhh
Q 022683          154 QKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLV  211 (293)
Q Consensus       154 qK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~  211 (293)
                      .++++||+|||||+|.+         ..|++|+.+|+||++|++|+|.|.+     |..+||..|+.
T Consensus        30 ~~~~~LA~aGFyytg~~D~v~Cf~C~~~l~~W~~~D~P~~eH~~~~p~C~f-----v~~~kg~~~v~   91 (96)
T d2vsla1          30 VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKY-----LLEQKGQEYIN   91 (96)
T ss_dssp             SCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHH-----HHHHHHHHHHH
T ss_pred             CCHHHHHHhCCEEcCCCCEEEeccCCCEeCCCCCCCCHHHHHHHHCcCCee-----hHhccChhhhh
Confidence            46899999999999965         3489999999999999999999999     77888887764

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.79  E-value=2.8e-10  Score=89.79  Aligned_cols=60  Identities=15%  Similarity=0.100  Sum_probs=52.6

Q ss_pred             HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhh
Q 022683          147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLV  211 (293)
Q Consensus       147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~  211 (293)
                      .|+..++...++||+|||||+|..         ..|.+|+.+|+||.+|++|+|.|.|     |..++++.++.
T Consensus        22 ~wp~~~~~~~~~LA~aGFyytg~~D~v~Cf~C~~~l~~W~~~D~p~~eH~~~~P~C~f-----v~~~k~~~fv~   90 (105)
T d1jd5a_          22 AWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRF-----VKLMKGQLYID   90 (105)
T ss_dssp             GCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHH-----HHHHHCHHHHH
T ss_pred             hCCCCCCcCHHHHHHcCCEECCCCCEEEeCccCCCccCCCCCCCHHHHHHHHCcCCcc-----hhhhCCHHHHH
Confidence            477788899999999999999955         4589999999999999999999999     77778777764

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=3.6e-09  Score=78.75  Aligned_cols=51  Identities=27%  Similarity=0.619  Sum_probs=45.2

Q ss_pred             cccccccccCcceEEeCCCCcccchhhHhc-----CCCCCcccccccceEEEcccCC
Q 022683          242 LACKRCNSRNSCVLLLPCRHLCSCKQCEAF-----LVSCPVCNSAKVASMEVFGSDF  293 (293)
Q Consensus       242 ~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~-----l~~CPvCr~~i~~~v~v~lS~~  293 (293)
                      ..|.||++...+.+++||||. +|..|...     ..+||+||..|+..-.|.+.+|
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~i~~~   79 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDPF   79 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCE-ECHHHHHHHHHTTCCSCTTTCCCCCCCCCSSCCCC
T ss_pred             CCCccCCCcCCCeEEeCCCCe-eeHHHHHHHHHHCcCcCCCCCcCccCCceeecCCC
Confidence            479999999999999999997 79999753     3579999999999988888877

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2e-09  Score=85.62  Aligned_cols=51  Identities=14%  Similarity=0.100  Sum_probs=45.1

Q ss_pred             HHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHH
Q 022683          148 AMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLS  198 (293)
Q Consensus       148 ~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~  198 (293)
                      |....+...++||+|||||+|.+         ..|.+|+.+|+||++|++++|.|.|.|.
T Consensus        47 Wp~~~~~~~~~LA~aGFyytg~~D~v~Cf~C~~~l~~W~~~DdP~~eH~r~sP~C~fvl~  106 (111)
T d1i3oe_          47 WPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFVLG  106 (111)
T ss_dssp             CCSSCSSCHHHHHHTTEEEEEETTEEEETTTCCEECCCCTTCCHHHHHHHHCTTCHHHHT
T ss_pred             CCCccCcCHHHHHHcCCEECCCCCeEEeCcCCCEeCCCCCCCCHHHHHHHHCcCCceeec
Confidence            66667889999999999999954         4599999999999999999999999553

>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.31  E-value=1.8e-08  Score=78.22  Aligned_cols=42  Identities=12%  Similarity=0.001  Sum_probs=38.4

Q ss_pred             cCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683          154 QKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM  195 (293)
Q Consensus       154 qK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~  195 (293)
                      ..+++||+|||||+|..         ..|.+|+.+|+||.+|++++|.|.+
T Consensus        21 ~~~~~LA~aGFyytg~~D~v~C~~C~~~l~~W~~~D~p~~eH~r~~p~C~f   71 (97)
T d1se0a_          21 LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPL   71 (97)
T ss_dssp             SCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCTT
T ss_pred             CCHHHHHhcCCEECCCCCEEEeCcCCCCcCCCCCCCCHHHHHHHHCcCCcc
Confidence            57899999999999955         4489999999999999999999998

>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: Anti-apoptotic protein survivin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4.2e-08  Score=80.47  Aligned_cols=45  Identities=9%  Similarity=-0.053  Sum_probs=39.2

Q ss_pred             HhhcCHHHHHHHhhhhhh------------hHHHHhhccccchHHHHHHHHhHHhHH
Q 022683          151 LMRQKEEDLIQATRRAME------------LEACLRKAEMESESWQRLARANEAMVM  195 (293)
Q Consensus       151 ~LrqK~eELa~Ag~~y~e------------leerLr~w~~E~~~Wq~hAr~neac~~  195 (293)
                      .....++.||+|||||++            ++..|+.|+.+|+||.+|++|+|.|.|
T Consensus        26 ~~~~~~~~LA~AGFyy~~~~~~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~f   82 (137)
T d2qfaa1          26 GCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAF   82 (137)
T ss_dssp             SCSSCHHHHHHTTEEECCBTTBTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCGG
T ss_pred             CCCCCHHHHHhcCceECCCCCCCCeEEecccCCCcCCCCCCCCHHHHHHHHCcCCce
Confidence            346788999999999954            234599999999999999999999999

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.7e-07  Score=65.36  Aligned_cols=43  Identities=33%  Similarity=0.846  Sum_probs=37.6

Q ss_pred             ccccccccccCcceEEeCCCCcccchhhHhcC-CCCCcccccccc
Q 022683          241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-VSCPVCNSAKVA  284 (293)
Q Consensus       241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-~~CPvCr~~i~~  284 (293)
                      ...|.||++.-.+.+++||||. +|..|..+. ..||+||.++..
T Consensus         6 ~l~C~IC~~~~~~p~~lpCgH~-fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T d1bora_           6 FLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred             CCCCcccCcccCCCEEecCCCH-HhHHHHHcCCCcCcCCCCcccC
Confidence            3589999999999999999996 999997665 699999998864

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.12  E-value=4.7e-07  Score=64.91  Aligned_cols=47  Identities=26%  Similarity=0.579  Sum_probs=37.8

Q ss_pred             cccccccccCcc-eEEeCCCCcccchhhHhcC----CCCCcccccccceEEEc
Q 022683          242 LACKRCNSRNSC-VLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASMEVF  289 (293)
Q Consensus       242 ~~C~iC~~~~~~-vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~v~  289 (293)
                      ..|.||++.-.+ ++++||+|. +|..|....    ..||+||.++...+..+
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~i~~~~~~~   57 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI   57 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred             CCCccCCcCccCCcEEeCCCCc-CcHHHHHHHHHhCCcCCCCCcchHhhcccc
Confidence            369999998655 566899996 999998753    79999999998766543

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=8.8e-07  Score=63.01  Aligned_cols=43  Identities=26%  Similarity=0.709  Sum_probs=33.4

Q ss_pred             cccccccccc-----CcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683          241 KLACKRCNSR-----NSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA  284 (293)
Q Consensus       241 ~~~C~iC~~~-----~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~  284 (293)
                      +..|.||++.     ...+++.||+|. +|..|....     ..||+||.+++.
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCcCCceeecCCceEEEeCccChH-hhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            4579999874     334566799996 999998643     579999999854

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=1.2e-06  Score=66.08  Aligned_cols=46  Identities=22%  Similarity=0.522  Sum_probs=39.2

Q ss_pred             hhhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683          238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA  284 (293)
Q Consensus       238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~  284 (293)
                      ..+...|.||++.-.+.+.+||||. +|..|....     ..||+||.++..
T Consensus        20 ~~~~l~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          20 FVKSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             hccCcCCccCCcchhcceecCCCCh-hhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            3456789999999999999999999 999998742     589999998753

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.5e-06  Score=59.19  Aligned_cols=41  Identities=20%  Similarity=0.480  Sum_probs=31.3

Q ss_pred             cccccccc----CcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683          243 ACKRCNSR----NSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA  284 (293)
Q Consensus       243 ~C~iC~~~----~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~  284 (293)
                      .|.||++.    ...++++||+|. +|..|....     ..||+||.++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~-~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCC-CCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCc-cchHHHHHHHhhcCCCCCccCCcCCC
Confidence            59999884    233455699997 999997753     369999998763

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4.8e-06  Score=63.78  Aligned_cols=47  Identities=26%  Similarity=0.564  Sum_probs=38.6

Q ss_pred             HhhhhccccccccccCcceEEeCCCCcccchhhHhcC-------CCCCccccccc
Q 022683          236 KEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-------VSCPVCNSAKV  283 (293)
Q Consensus       236 ~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-------~~CPvCr~~i~  283 (293)
                      ....+...|.||++--.+-+.+||||. +|..|-...       ..||+||.++.
T Consensus        16 ~~l~~~l~CpIC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          16 NAMQKILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HHHHHHTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             HhcccCcCCCccCchhCCeEEcCCCCc-hhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            445667889999999888888999997 999996531       47999999875

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.70  E-value=8.6e-06  Score=56.12  Aligned_cols=42  Identities=24%  Similarity=0.555  Sum_probs=32.1

Q ss_pred             ccccccccccCc---ceEEe-CCCCcccchhhHhcC----CCCCccccccc
Q 022683          241 KLACKRCNSRNS---CVLLL-PCRHLCSCKQCEAFL----VSCPVCNSAKV  283 (293)
Q Consensus       241 ~~~C~iC~~~~~---~vvll-PC~Hl~lC~~C~~~l----~~CPvCr~~i~  283 (293)
                      ...|.||++.-.   .++.+ +|+|. +|..|....    ..||+||.++.
T Consensus         5 ~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           5 GVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCeEECccccCCCEEEEeCCCCCc-ccHHHHHHHHHhCCcCCCCCCEeE
Confidence            446999987643   35445 59996 999998864    79999999763

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1e-05  Score=61.25  Aligned_cols=50  Identities=28%  Similarity=0.607  Sum_probs=39.2

Q ss_pred             HHHhhhhccccccccccCcceE-EeCCCCcccchhhHhcC--CCCCcccccccc
Q 022683          234 ELKEERRKLACKRCNSRNSCVL-LLPCRHLCSCKQCEAFL--VSCPVCNSAKVA  284 (293)
Q Consensus       234 e~~~~~~~~~C~iC~~~~~~vv-llPC~Hl~lC~~C~~~l--~~CPvCr~~i~~  284 (293)
                      ...+..+...|.||++.-.+-+ +.||||. +|..|....  ..||+||.++..
T Consensus        15 ~l~~l~~~l~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~~   67 (97)
T d1jm7b_          15 ALDRLEKLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAWI   67 (97)
T ss_dssp             HHHHHHHTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCSC
T ss_pred             HHHhhhhcCCCccCCchhhcCceeCCCCCc-hhHHHHHHHHhccccccCCcCch
Confidence            3456677889999999877755 4589997 999996654  579999987653

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=2.3e-05  Score=60.51  Aligned_cols=41  Identities=22%  Similarity=0.436  Sum_probs=31.0

Q ss_pred             ccccccccc------------------CcceEEeCCCCcccchhhHhcC---------CCCCccccccc
Q 022683          242 LACKRCNSR------------------NSCVLLLPCRHLCSCKQCEAFL---------VSCPVCNSAKV  283 (293)
Q Consensus       242 ~~C~iC~~~------------------~~~vvllPC~Hl~lC~~C~~~l---------~~CPvCr~~i~  283 (293)
                      ..|.||++.                  ...+.++||+|. +|..|-...         .+||+||+.+.
T Consensus        26 ~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~-FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             ccccchhheecccccccccccccccccccceEECCCCCh-hhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            369999864                  234678899999 999997542         26999998763

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=7.7e-05  Score=51.08  Aligned_cols=42  Identities=17%  Similarity=0.146  Sum_probs=35.7

Q ss_pred             cccccccccCcceEEeC-CCCcccchhhHhcC----CCCCcccccccc
Q 022683          242 LACKRCNSRNSCVLLLP-CRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       242 ~~C~iC~~~~~~vvllP-C~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      +.|.||++--.+-+++| |||. .|+.|-...    ..||+||.+++.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~-fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CCCccCCchHHhcCccCCCCCc-ccHHHHHHHHhhccCCCccCCcCCH
Confidence            46999999999988776 9999 899997653    799999998764

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00011  Score=53.34  Aligned_cols=45  Identities=13%  Similarity=-0.124  Sum_probs=37.6

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA  284 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~  284 (293)
                      .+...|.||++--.+-+.+||||. .|..|-...     ..||+||.+++.
T Consensus         5 P~~l~CpIc~~l~~dPv~~~cGht-fc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           5 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CccccCcCcCchhhhhcccCCcCe-ecHHHHHHHHhcCCccCCCccccccc
Confidence            456789999999888888999996 999996542     579999998864

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.81  E-value=0.0002  Score=51.72  Aligned_cols=46  Identities=7%  Similarity=0.070  Sum_probs=38.6

Q ss_pred             hhccccccccccCcceEEeCCCCcccchhhHhc-----CCCCCcccccccce
Q 022683          239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF-----LVSCPVCNSAKVAS  285 (293)
Q Consensus       239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~-----l~~CPvCr~~i~~~  285 (293)
                      .+...|.||++--.+-+.+||||. .|+.|-..     ...||+|+.+++..
T Consensus         6 P~~l~CpIc~~~m~dPV~~~cgh~-fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CccCCCcCcCchhhCceEccCCCc-chHHHHHHHHHHCCCCCCcccccCCcc
Confidence            456789999999999889999999 99999753     25799999998753

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=96.72  E-value=0.00014  Score=50.09  Aligned_cols=43  Identities=16%  Similarity=0.362  Sum_probs=34.3

Q ss_pred             hccccccccccCcceEEeCCC-----CcccchhhHhcC------CCCCccccccc
Q 022683          240 RKLACKRCNSRNSCVLLLPCR-----HLCSCKQCEAFL------VSCPVCNSAKV  283 (293)
Q Consensus       240 ~~~~C~iC~~~~~~vvllPC~-----Hl~lC~~C~~~l------~~CPvCr~~i~  283 (293)
                      +...|.||++...+-.+.||+     |. ++..|....      .+||+||++++
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~-~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELEN-VHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGS-CCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCE-EcHHHHHHHHhhCCCCCCcccCCeee
Confidence            356799999987777778887     65 889997652      58999999875

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00035  Score=51.77  Aligned_cols=31  Identities=23%  Similarity=0.267  Sum_probs=25.7

Q ss_pred             cceEEeCCCCcccchhhHhcC----CCCCccccccc
Q 022683          252 SCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKV  283 (293)
Q Consensus       252 ~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~  283 (293)
                      ..++++||+|. ++..|-..-    .+||+||.+..
T Consensus        50 ~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          50 CTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCeEEccccCc-ccHHHHHHHHHHCCcCCCCCCccc
Confidence            35788999999 999998752    79999999764

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.00059  Score=51.68  Aligned_cols=48  Identities=10%  Similarity=0.007  Sum_probs=41.8

Q ss_pred             hhhhccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683          237 EERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA  284 (293)
Q Consensus       237 ~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~  284 (293)
                      +..+...|.||++--.+-|++||+|...|+.|-...    ..||+|+.+++.
T Consensus        18 ~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             CCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            345678999999999999999999988999998763    799999998864

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0043  Score=45.54  Aligned_cols=43  Identities=23%  Similarity=0.533  Sum_probs=30.7

Q ss_pred             ccccccccccCc--c-eEEeCCCCcccchhhHhcC------------CCCCcccccccc
Q 022683          241 KLACKRCNSRNS--C-VLLLPCRHLCSCKQCEAFL------------VSCPVCNSAKVA  284 (293)
Q Consensus       241 ~~~C~iC~~~~~--~-vvllPC~Hl~lC~~C~~~l------------~~CPvCr~~i~~  284 (293)
                      ...|.||++.-.  . +.+.+|+|. +|..|....            -+||.|..+...
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~   62 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQG   62 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred             CCcCccCCCcccCCceEEECCCCCE-eCCcCHHHHHHHHHhcCCccccCCcCCCCCCCc
Confidence            457999998743  3 556789997 999996531            269997655443