Citrus Sinensis ID: 022686

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALLSSFMLPFKPNVVP
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccEEEEcccccHHHHHccccEEEEEcccccccccccccEEEEccEEEEEEEEEEEcccHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHccEEEEEEEEcccccHHHHHHHHHccccHHHHHHHHcccccccccccccccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHccccccccccHHcHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHcccEEEEEEEccccHcccccccEEEEEcEEEEEEEEEEEcccHHHHHHHccHHHcccccccHHHHHHHHHHHccHHHHHHccEEEEEEccccccHHHHHHHHHHcccccHHHHHHccHcccccccccccccHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MERLKDCMEELLKFTLSShidetldfdlgISSKFCTnllqddpndavspstsfdfdsdedslqgvplypLYKRLALALCRsvncgafcRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLEtvegrctisdynsigpgsvILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLlglshtagtisdalppprsallssfmlpfkpnvvp
Flexible Loop (DISEMBL)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVkvlpgvktieEGVQIYRKFyteekersnGVLAICISKMATQPYVTLASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALlssfmlpfkpnvvp
Low Complexity Region (SEG)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVspstsfdfdsdedsLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALLSSFMLPFKPNVVP
Disordered region (IsUnstruct)
*******MEELLKFTLSSHIDETLDFDLGISSKFCTNLL**********************LQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLLGLSHTAGTI*************************
Disordered Region (DISOPRED)
******C*EELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKK********************ILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALLSSFMLPFKPN***
Disordered Region (DISEMBL)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALLSSFMLPFKPNVVP
Disordered Region (DISPRO)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALLSSFMLPFKPNVVP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALLSSFMLPFKPNVVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
224093009	380	predicted protein [Populus trichocarpa]	0.982	0.757	0.604	6e-98
255586386	370	conserved hypothetical protein [Ricinus	0.976	0.772	0.597	3e-97
359495929	398	PREDICTED: uncharacterized protein LOC10	0.948	0.698	0.605	2e-93
363808278	400	uncharacterized protein LOC100807259 [Gl	0.952	0.697	0.513	1e-74
238479547	388	RNA-binding ASCH domain protein [Arabido	0.952	0.719	0.498	8e-73
297828804	240	hypothetical protein ARALYDRAFT_477581 [	0.737	0.9	0.469	3e-55
357156930	382	PREDICTED: uncharacterized protein LOC10	0.894	0.685	0.420	4e-52
21536491	244	unknown [Arabidopsis thaliana]	0.767	0.922	0.455	8e-52
18396513	244	RNA-binding ASCH domain protein [Arabido	0.767	0.922	0.455	8e-52
2289012	483	hypothetical protein [Arabidopsis thalia	0.750	0.455	0.418	5e-50

>gi|224093009|ref|XP_002309781.1| predicted protein [Populus trichocarpa] gi|222852684|gb|EEE90231.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (931), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 176/291 (60%), Positives = 228/291 (78%), Gaps = 3/291 (1%)

Query: 1   MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDED 60
           ME+ ++ +EELLKFTL SHI++TL+F+LG+S  FC NLL++DPND +  ST     +  D
Sbjct: 1   MEKQRERIEELLKFTLESHINQTLEFNLGLSKDFCINLLEEDPNDMLCHSTPTP--TPTD 58

Query: 61  SLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSS 120
           S  GV LYPLYKRLA AL RSV  GA CRTY+K+   +++  L+QKEE W QLI  KG  
Sbjct: 59  SFDGVALYPLYKRLASALYRSVKSGAVCRTYEKMVFGDKDSNLKQKEENWDQLIKEKGL- 117

Query: 121 DLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQS 180
           +L+++L+ +  E+HVQEP+FS +KDG +T+EGRC   DY  I PG +IL+NK ++LKV+ 
Sbjct: 118 ELINVLEGISCEIHVQEPYFSLLKDGRKTIEGRCATGDYIRIEPGDLILVNKIVVLKVED 177

Query: 181 VCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPY 240
           V  Y SFS+ML+AE+L KVLPGVKT+EEGV+IYRKFYTEEKE SNGVLAIC+SK+A QPY
Sbjct: 178 VRRYASFSKMLQAENLEKVLPGVKTVEEGVKIYRKFYTEEKEMSNGVLAICVSKLAAQPY 237

Query: 241 VTLASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALLSSFMLPFKPNV 291
           ++LASIL GL Y G++SLLGL+ T GT+S+ALPPPRS LLSSF+ P+ PN+
Sbjct: 238 LSLASILFGLSYGGVRSLLGLADTGGTVSNALPPPRSTLLSSFIFPYNPNI 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586386|ref|XP_002533840.1| conserved hypothetical protein [Ricinus communis] gi|223526219|gb|EEF28542.1| conserved hypothetical protein [Ricinus communis]

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 174/291 (59%), Positives = 231/291 (79%), Gaps = 5/291 (1%)

Query: 1   MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDED 60
           ME+L++ +EE++K+TL+SHI++TL FDL +S +FC+NLL+ DPND VS       +S   
Sbjct: 1   MEQLRNRIEEIVKYTLNSHINQTLGFDLSLSKEFCSNLLRADPNDTVS----LPPNSTSG 56

Query: 61  SLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSS 120
           S +GVP YPL++RL  AL + +   +FC+TY  +  +NE+  L+QKEE+W++LIL KGS 
Sbjct: 57  SFEGVPEYPLFRRLGSALYQCIISRSFCKTYDTIEFINEDNSLKQKEEQWNKLILEKGS- 115

Query: 121 DLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQS 180
           +L+++L A   ELHVQEPFFS +KDGL+T+EGRC   +Y+ I PG+++L+NK ++L+V+ 
Sbjct: 116 ELMNVLMATFHELHVQEPFFSLLKDGLKTIEGRCADDNYSRIEPGALLLINKSVVLEVKD 175

Query: 181 VCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPY 240
           V  Y SF +MLEAESL KVLPGVKTIEEGV++YRKFYTEEKE SNGVLAIC+SK   QPY
Sbjct: 176 VRRYPSFLKMLEAESLSKVLPGVKTIEEGVEVYRKFYTEEKEMSNGVLAICVSKSPYQPY 235

Query: 241 VTLASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALLSSFMLPFKPNV 291
           ++LA +LSGLGY GIQSLLG++HT GTISDALPP RS LLSSF LP++PNV
Sbjct: 236 LSLARMLSGLGYTGIQSLLGIAHTVGTISDALPPSRSTLLSSFTLPYRPNV 286

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495929|ref|XP_002272151.2| PREDICTED: uncharacterized protein LOC100242314 [Vitis vinifera] gi|296081341|emb|CBI17687.3| unnamed protein product [Vitis vinifera]

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 175/289 (60%), Positives = 222/289 (76%), Gaps = 11/289 (3%)

Query: 4   LKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDP-NDAVSPSTSFDFDSDEDSL 62
           L +C+EEL+K+TL S ++ TL+ DLG+S  +C+ LL+DD   D  S ST        DS 
Sbjct: 19  LANCVEELVKYTLYSSVNGTLEIDLGLSKDYCSALLKDDHLTDPTSIST--------DSF 70

Query: 63  QGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDL 122
           +GVP YPLYKRL+ AL RS+  GAF   Y  +AL++E+  L+QKEE W++L+++KG  +L
Sbjct: 71  EGVPPYPLYKRLSAALYRSIISGAFWEIYSTMALIHEDSSLKQKEE-WNKLVVDKGL-EL 128

Query: 123 VDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVC 182
           V+ILK ++FELHVQEPFFS +KDGL+ +EGRC + DYN IG G++IL NKC++L+VQ V 
Sbjct: 129 VNILKTIDFELHVQEPFFSQLKDGLKIIEGRCAVGDYNRIGSGALILFNKCLVLEVQDVR 188

Query: 183 HYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVT 242
            Y SFS++LE+E L +VLPGVKTIEEGVQIYRKFYT+EKERSNGVLAIC++K A QPY+ 
Sbjct: 189 RYASFSQLLESEGLAEVLPGVKTIEEGVQIYRKFYTKEKERSNGVLAICVAKPAAQPYIF 248

Query: 243 LASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALLSSFMLPFKPNV 291
           LA IL GL Y G+Q LLG  HT GTI +ALPPPRS LLSSFM P KPNV
Sbjct: 249 LAYILFGLSYGGVQRLLGFMHTVGTIPEALPPPRSTLLSSFMSPHKPNV 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808278|ref|NP_001242240.1| uncharacterized protein LOC100807259 [Glycine max] gi|255644803|gb|ACU22903.1| unknown [Glycine max]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 149/290 (51%), Positives = 201/290 (69%), Gaps = 11/290 (3%)

Query: 3   RLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSL 62
           +L DC+EEL++FTL+S+        L +SS+F +NLL+DD   A  PS+S      +DSL
Sbjct: 20  KLCDCLEELVRFTLNSN-----SHHLNLSSQFFSNLLKDD---ATHPSSSHSLSQPDDSL 71

Query: 63  QGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNE--ECFLEQKEEEWSQLILNKGSS 120
           +GVP YPLYKR + AL + ++   FCRT   +A+ +E  +  ++QK  EW +LI+ KG  
Sbjct: 72  EGVPPYPLYKRFSSALLKCMDSETFCRTGANLAMTDEFEDSSMQQKRNEWHRLIVEKGF- 130

Query: 121 DLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQS 180
           ++ +ILK+V FE HVQEPFFS + DGL+T+EGRC    YN I  G++IL NK ++ +VQ 
Sbjct: 131 EIENILKSVSFEFHVQEPFFSQLNDGLKTIEGRCATGKYNRIKSGNLILFNKSVVFEVQG 190

Query: 181 VCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPY 240
           V  Y +F  MLEAESL K LPGV++ EEGV++Y++F TEEKE++NGVLAI +SK   QPY
Sbjct: 191 VRRYPTFFAMLEAESLGKGLPGVESSEEGVKVYQRFCTEEKEQANGVLAIVVSKFTPQPY 250

Query: 241 VTLASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALLSSFMLPFKPN 290
            +LA +   L Y G+QSLLGL HT GTI +ALPPP S LL+SF  P  PN
Sbjct: 251 DSLARLFCELSYEGVQSLLGLMHTTGTIPNALPPPISTLLASFNFPCNPN 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479547|ref|NP_001154572.1| RNA-binding ASCH domain protein [Arabidopsis thaliana] gi|330255179|gb|AEC10273.1| RNA-binding ASCH domain protein [Arabidopsis thaliana]

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 149/299 (49%), Positives = 205/299 (68%), Gaps = 20/299 (6%)

Query: 1   MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDED 60
           M +++DC++E++KFTL    D  ++FD+G++ +FC+ LL          S   D +  E 
Sbjct: 1   MIKIRDCLDEMVKFTL----DYCVEFDIGLTGEFCSGLL-------CGESVLHDGERIES 49

Query: 61  S-------LQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQL 113
           S         GVP YPLYK LAL L +S++ G+FC T++K++L  E   L++KE+EWS+L
Sbjct: 50  SSYALLHRFSGVPDYPLYKVLALGLLKSIDSGSFCGTFEKISLGKEVIRLKEKEDEWSKL 109

Query: 114 ILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIG-PGSVILLNK 172
           I  KGS +LV+ LK V  EL VQEP FS +KDG++TVE RC   +Y+ I   GS++++NK
Sbjct: 110 INQKGS-ELVNALKDVFSELQVQEPLFSLMKDGIKTVEARCFEEEYDRIRRGGSMVMINK 168

Query: 173 CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICI 232
           C+M +V  +  Y SF E+L+AES  KV PG KT+EEG+Q++RK Y  ++E  NGV+AI +
Sbjct: 169 CLMFEVLELHQYASFYELLKAESSEKVFPGTKTVEEGMQMFRKLYDTDQENFNGVVAIHL 228

Query: 233 SKMATQPYVTLASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALLSSFMLPFKPNV 291
           SK   QP V LA ILSGL Y G+Q+LLGLSHT G+I  ALPPPRS LLSSFMLP+KP +
Sbjct: 229 SKSVAQPCVALAHILSGLSYTGVQNLLGLSHTTGSIFHALPPPRSMLLSSFMLPYKPKI 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828804|ref|XP_002882284.1| hypothetical protein ARALYDRAFT_477581 [Arabidopsis lyrata subsp. lyrata] gi|297328124|gb|EFH58543.1| hypothetical protein ARALYDRAFT_477581 [Arabidopsis lyrata subsp. lyrata]

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 123/262 (46%), Positives = 162/262 (61%), Gaps = 46/262 (17%)

Query: 4   LKDCMEELLKFTLSSHIDETL-DFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSL 62
           L++CME LL+FTLSSH+DE++  FDL ++  FC +LL++  +    P+            
Sbjct: 14  LRECMESLLRFTLSSHLDESVPSFDLDLTRDFCLHLLEEATDSTEKPA------------ 61

Query: 63  QGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKE-----EEWSQLILNK 117
                  +YK LA AL                     EC   + +     E++S+L    
Sbjct: 62  -------VYKLLARALS--------------------ECLASEGDNNPNLEKYSKLFHGL 94

Query: 118 GSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLK 177
           G  DL+++LK V FELHVQEP+F+ +KDGL+TVEGRC + DY  I  G+ IL NKC++L+
Sbjct: 95  G-HDLINMLKKVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYMRISSGAFILFNKCLLLE 153

Query: 178 VQSVCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMAT 237
           VQ V HY SFSEML  E L KVLPGV++IEEGVQ+YR FY+EEKER NGVLAI ++K A 
Sbjct: 154 VQDVHHYTSFSEMLIMEGLAKVLPGVESIEEGVQVYRNFYSEEKERMNGVLAIHVAKPAN 213

Query: 238 QPYVTLASILSGLGYVGIQSLL 259
           QPY  LA +LS L   GI+SLL
Sbjct: 214 QPYAALAGVLSELKSTGIKSLL 235

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357156930|ref|XP_003577624.1| PREDICTED: uncharacterized protein LOC100838225 [Brachypodium distachyon]

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 121/288 (42%), Positives = 173/288 (60%), Gaps = 26/288 (9%)

Query: 4   LKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQ 63
           L   + ELL+F LSSH+    D  L +S  +C+ LL DD  + ++   +   +  +    
Sbjct: 20  LSSALGELLRFVLSSHLTAP-DPALPLSPSYCSRLLDDDLCEKLAAELAGCIEEGQ---- 74

Query: 64  GVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLV 123
            +P  P            V  GAF        +  EE    +++ EW  ++L KG+ +L 
Sbjct: 75  -LPEPP------------VGSGAF-------RIPAEEDGPRERDREWEAVLLEKGA-ELK 113

Query: 124 DILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCH 183
            +   VEF LHVQEP+F+ +  G + VEGR    +YN I  GS +L NKC++L+V++V  
Sbjct: 114 RMYDGVEFVLHVQEPYFTQLSAGTKNVEGRLAAGNYNRITQGSWLLFNKCLLLEVEAVRK 173

Query: 184 YDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTL 243
           Y SF EML+ E +  VLPG+ +IE+GV++YRKFYTEEKE S+GVLAI +SK A QPY T+
Sbjct: 174 YSSFLEMLQEEMISNVLPGILSIEDGVKVYRKFYTEEKENSSGVLAISVSKPARQPYETM 233

Query: 244 ASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALLSSFMLPFKPNV 291
             +L+ LGY G+  LLGL++TAGT+ D +PPPRS L+SS M   +P V
Sbjct: 234 TGLLARLGYDGLGRLLGLANTAGTVPDGVPPPRSVLISSCMKLHQPTV 281

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536491|gb|AAM60823.1| unknown [Arabidopsis thaliana]

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 124/272 (45%), Positives = 166/272 (61%), Gaps = 47/272 (17%)

Query: 4   LKDCMEELLKFTLSSHIDETL-DFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSL 62
           L++CME LL+F+L SH++E++  FDL ++  FC +LL +              DS E S 
Sbjct: 14  LRECMESLLRFSLRSHLNESVPSFDLDLTRDFCLHLLGEAT------------DSTEKS- 60

Query: 63  QGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKE-----EEWSQLILNK 117
                  +YK LA AL                     EC   + +     E++S+LI   
Sbjct: 61  ------AVYKLLATALS--------------------ECLASEGDKNSNLEKYSKLIHGL 94

Query: 118 GSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLK 177
           G  DL+++LK V FELHVQEP+F+ +KDGL+TVEGRC + DY  I  G+ +L NKC++L+
Sbjct: 95  G-YDLINMLKEVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYMRISSGAFLLFNKCLLLE 153

Query: 178 VQSVCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMAT 237
           VQ V  Y SFSEML+ E L KVLPGV++IEEGVQ+YR FY+EEKER NGV+AI ++K A 
Sbjct: 154 VQDVHRYTSFSEMLKVEGLSKVLPGVESIEEGVQVYRNFYSEEKERMNGVVAIRVAKPAN 213

Query: 238 QPYVTLASILSGLGYVGIQSLLGLSHTAGTIS 269
           QP   LA +LS L   GI+SLL   +TAG  S
Sbjct: 214 QPSAALAGVLSELKSSGIKSLLD-EYTAGVTS 244

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396513|ref|NP_566202.1| RNA-binding ASCH domain protein [Arabidopsis thaliana] gi|6017115|gb|AAF01598.1|AC009895_19 unknown protein [Arabidopsis thaliana] gi|22655129|gb|AAM98155.1| expressed protein [Arabidopsis thaliana] gi|32189307|gb|AAP75808.1| At3g03320 [Arabidopsis thaliana] gi|332640408|gb|AEE73929.1| RNA-binding ASCH domain protein [Arabidopsis thaliana]

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 124/272 (45%), Positives = 165/272 (60%), Gaps = 47/272 (17%)

Query: 4   LKDCMEELLKFTLSSHIDETL-DFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSL 62
           L++CME LL+F+L SH++E++  FDL ++  FC +LL +              DS E S 
Sbjct: 14  LRECMESLLRFSLRSHLNESVPSFDLDLTRDFCLHLLGEAT------------DSTEKS- 60

Query: 63  QGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKE-----EEWSQLILNK 117
                  +YK LA AL                     EC   + +     E++S+LI   
Sbjct: 61  ------AVYKLLATALS--------------------ECLASEGDKNSNLEKYSKLIHGL 94

Query: 118 GSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLK 177
           G  DL+++LK V FELHVQEP+F+ +KDGL+TVEGRC + DY  I  G  +L NKC++L+
Sbjct: 95  G-YDLINMLKEVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYMRISSGDFLLFNKCLLLE 153

Query: 178 VQSVCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMAT 237
           VQ V  Y SFSEML+ E L KVLPGV++IEEGVQ+YR FY+EEKER NGV+AI ++K A 
Sbjct: 154 VQDVHRYTSFSEMLKVEGLAKVLPGVESIEEGVQVYRNFYSEEKERMNGVVAIRVAKPAN 213

Query: 238 QPYVTLASILSGLGYVGIQSLLGLSHTAGTIS 269
           QP   LA +LS L   GI+SLL   +TAG  S
Sbjct: 214 QPSAALAGVLSELKSSGIKSLLD-EYTAGVTS 244

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2289012|gb|AAB64341.1| hypothetical protein [Arabidopsis thaliana]

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 123/294 (41%), Positives = 165/294 (56%), Gaps = 74/294 (25%)

Query: 5   KDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDS--- 61
           +DC++E++KFTL    D  ++FD+G++ +FC+ LL          S   D +  E S   
Sbjct: 171 EDCLDEMVKFTL----DYCVEFDIGLTGEFCSGLL-------CGESVLHDGERIESSSYA 219

Query: 62  ----LQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNK 117
                 GVP YPLYK LAL L +S++ G+FC T++K++L  E   L++KE+EWS+LI  K
Sbjct: 220 LLHRFSGVPDYPLYKVLALGLLKSIDSGSFCGTFEKISLGKEVIRLKEKEDEWSKLINQK 279

Query: 118 GSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLK 177
           GS +LV+       ELH                                           
Sbjct: 280 GS-ELVN-------ELH------------------------------------------- 288

Query: 178 VQSVCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMAT 237
                 Y SF E+L+AES  KV PG KT+EEG+Q++RK Y  ++E  NGV+AI +SK   
Sbjct: 289 -----QYASFYELLKAESSEKVFPGTKTVEEGMQMFRKLYDTDQENFNGVVAIHLSKSVA 343

Query: 238 QPYVTLASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALLSSFMLPFKPNV 291
           QP V LA ILSGL Y G+Q+LLGLSHT G+I  ALPPPRS LLSSFMLP+KP +
Sbjct: 344 QPCVALAHILSGLSYTGVQNLLGLSHTTGSIFHALPPPRSMLLSSFMLPYKPKI 397

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:5019474741	388	AT2G43465 "AT2G43465" [Arabido	0.976	0.737	0.496	7.7e-71
TAIR|locus:2099699	244	AT3G03320 "AT3G03320" [Arabido	0.604	0.725	0.538	2.6e-53

TAIR|locus:5019474741 AT2G43465 "AT2G43465" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 145/292 (49%), Positives = 201/292 (68%)

Query:     1 MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVXXXXXXXXXXXXX 60
             M +++DC++E++KFTL    D  ++FD+G++ +FC+ LL  +                  
Sbjct:     1 MIKIRDCLDEMVKFTL----DYCVEFDIGLTGEFCSGLLCGESVLHDGERIESSSYALLH 56

Query:    61 XLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSS 120
                GVP YPLYK LAL L +S++ G+FC T++K++L  E   L++KE+EWS+LI  KGS 
Sbjct:    57 RFSGVPDYPLYKVLALGLLKSIDSGSFCGTFEKISLGKEVIRLKEKEDEWSKLINQKGS- 115

Query:   121 DLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPG-SVILLNKCMMLKVQ 179
             +LV+ LK V  EL VQEP FS +KDG++TVE RC   +Y+ I  G S++++NKC+M +V 
Sbjct:   116 ELVNALKDVFSELQVQEPLFSLMKDGIKTVEARCFEEEYDRIRRGGSMVMINKCLMFEVL 175

Query:   180 SVCHYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQP 239
              +  Y SF E+L+AES  KV PG KT+EEG+Q++RK Y  ++E  NGV+AI +SK   QP
Sbjct:   176 ELHQYASFYELLKAESSEKVFPGTKTVEEGMQMFRKLYDTDQENFNGVVAIHLSKSVAQP 235

Query:   240 YVTLASILSGLGYVGIQSLLGLSHTAGTISDALPPPRSALLSSFMLPFKPNV 291
              V LA ILSGL Y G+Q+LLGLSHT G+I  ALPPPRS LLSSFMLP+KP +
Sbjct:   236 CVALAHILSGLSYTGVQNLLGLSHTTGSIFHALPPPRSMLLSSFMLPYKPKI 287

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099699 AT3G03320 "AT3G03320" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
 Identities = 99/184 (53%), Positives = 128/184 (69%)

Query:    91 YKKVALMNEECFLEQKE-----EEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKD 145
             YK +A    EC   + +     E++S+LI   G  DL+++LK V FELHVQEP+F+ +KD
Sbjct:    63 YKLLATALSECLASEGDKNSNLEKYSKLIHGLGY-DLINMLKEVNFELHVQEPYFTQLKD 121

Query:   146 GLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKT 205
             GL+TVEGRC + DY  I  G  +L NKC++L+VQ V  Y SFSEML+ E L KVLPGV++
Sbjct:   122 GLKTVEGRCAVGDYMRISSGDFLLFNKCLLLEVQDVHRYTSFSEMLKVEGLAKVLPGVES 181

Query:   206 IEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLLGLSHTA 265
             IEEGVQ+YR FY+EEKER NGV+AI ++K A QP   LA +LS L   GI+SLL   +TA
Sbjct:   182 IEEGVQVYRNFYSEEKERMNGVVAIRVAKPANQPSAALAGVLSELKSSGIKSLLD-EYTA 240

Query:   266 GTIS 269
             G  S
Sbjct:   241 GVTS 244

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
cd06555	109	cd06555, ASCH_PF0470_like, ASC-1 homology domain,	9e-31
COG4043	111	COG4043, COG4043, Preprotein translocase subunit S	1e-25
pfam04266	104	pfam04266, ASCH, ASCH domain	1e-08
smart01022	99	smart01022, ASCH, The ASCH domain adopts a beta-ba	1e-04

>gnl|CDD|119347 cd06555, ASCH_PF0470_like, ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470

 Score =  111 bits (279), Expect = 9e-31
 Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 5/109 (4%)

Query: 131 FELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN-----KCMMLKVQSVCHYD 185
            E+ ++E  F  IK G +T+E R        I  G  IL N     + +++KV  +  YD
Sbjct: 1   HEMGLEEEPFELIKSGKKTIEIRLNDEKRQQIKVGDKILFNDLDTGQQLLVKVVDIRKYD 60

Query: 186 SFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISK 234
           SF E+LE E L KV PGV +IEEGV+   K Y++E+E+  GVLAI I  
Sbjct: 61  SFRELLEEEGLEKVGPGVDSIEEGVKDTYKIYSKEQEKKYGVLAIEIRV 109

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. Length = 109

>gnl|CDD|226530 COG4043, COG4043, Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]

 Score = 97.9 bits (244), Expect = 1e-25
 Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 1/107 (0%)

Query: 130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMML-KVQSVCHYDSFS 188
              + ++E +   IK G + +E R        I PG  I+ N   +  +V  V  YD+F 
Sbjct: 2   VHRMGLREEYLELIKAGKKKIEVRLADPKRRQIKPGDKIIFNGDKLKVEVIDVRVYDTFE 61

Query: 189 EMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKM 235
           EML  E +  VLP V + EEG++ YR FY  EKE+  GVLAI I  +
Sbjct: 62  EMLREEPIENVLPDVPSFEEGLRRYRNFYPSEKEKRYGVLAIEIEPI 108

Length = 111

>gnl|CDD|217998 pfam04266, ASCH, ASCH domain

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

Query: 133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMM-----LKVQSVCHYDSF 187
           L   + +   I  G +T E R        +G   ++            ++V  V     F
Sbjct: 1   LSFGQEYADLILSGKKTAEYRLWDEPLPQVGDLLILFELNGGGRPVGVIEVTDV-EIIPF 59

Query: 188 SEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAI 230
            E+ E  +        +++EE  +++R+FY EE E   GV+ I
Sbjct: 60  EEVTEEHAY----LEGESLEEWRKVHREFYPEESEEDEGVVVI 98

The ASCH domain adopts a beta-barrel fold similar to the pfam01472 domain. It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation. Length = 104

>gnl|CDD|214979 smart01022, ASCH, The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCM-----MLKVQSVCHYDSF 187
           L  ++     I  G +T   R           G ++++         +++V SV     F
Sbjct: 1   LSFKDELADLILSGKKTATIRLENEPL--PKVGDLLIVLDGEGKPVCVIEVTSVE-IIPF 57

Query: 188 SEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKE 222
            ++         L G  ++EE  +++++FY E+ E
Sbjct: 58  KDVTAEH---AYLEGEGSLEEWRKVHKEFYPEDME 89

It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
cd06555	109	ASCH_PF0470_like ASC-1 homology domain, subfamily	100.0
COG4043	111	Preprotein translocase subunit Sec61beta [Intracel	100.0
cd06541	105	ASCH ASC-1 homology or ASCH domain, a small beta-b	99.83
PF04266	105	ASCH: ASCH domain; InterPro: IPR007374 The ASCH do	99.66
cd06552	100	ASCH_yqfb_like ASC-1 homology domain, subfamily si	98.98
PF12961	72	DUF3850: Domain of Unknown Function with PDB struc	98.41
PRK04980	102	hypothetical protein; Provisional	96.4
COG2411	188	Uncharacterized conserved protein [Function unknow	92.42
COG3097	106	Uncharacterized protein conserved in bacteria [Fun	90.68
cd06553	127	ASCH_Ef3133_like ASC-1 homology domain, subfamily	90.0
PRK11507	70	ribosome-associated protein; Provisional	82.31

>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470

Probab=100.00  E-value=8.6e-40  Score=268.19  Aligned_cols=104  Identities=43%  Similarity=0.611  Sum_probs=101.7

Q ss_pred             eeeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEce-----eEEEEEEEEeecCCHHHHHhccCccccCCCCCC
Q 022686          131 FELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNK-----CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKT  205 (293)
Q Consensus       131 ~eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~~-----~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~S  205 (293)
                      |+|+|+++||++|++|+||||||+||+||++|++||+|+|++     ++.|+|++|++|+||++||++|++.+|+|+++|
T Consensus         1 h~m~l~~~~F~~I~~G~KtiEiRlnD~kr~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~sF~~ll~~e~~~~~~~~~~s   80 (109)
T cd06555           1 HEMGLEEEPFELIKSGKKTIEIRLNDEKRQQIKVGDKILFNDLDTGQQLLVKVVDIRKYDSFRELLEEEGLEKVGPGVDS   80 (109)
T ss_pred             CccccChHHHHHHHcCCCEEEEEecccchhcCCCCCEEEEEEcCCCcEEEEEEEEEEecCCHHHHHHhcCHhhcCCCCCc
Confidence            789999999999999999999999999999999999999986     899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCHhHHhhcceEEEEEEe
Q 022686          206 IEEGVQIYRKFYTEEKERSNGVLAICISK  234 (293)
Q Consensus       206 iEEgv~~yr~iYskEkE~~yGVvAIeI~l  234 (293)
                      +|+|+++||+|||+|||++||||||+|++
T Consensus        81 ~ee~~~~~~~~Y~~e~e~~~GvlaI~i~~  109 (109)
T cd06555          81 IEEGVKDTYKIYSKEQEKKYGVLAIEIRV  109 (109)
T ss_pred             HHHHHHHHHHhCCHHHHHhcCEEEEEEEC
Confidence            99999999999999999999999999974

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.

>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-39  Score=264.32  Aligned_cols=106  Identities=38%  Similarity=0.631  Sum_probs=103.9

Q ss_pred             ceeeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEc-eeEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022686          130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN-KCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE  208 (293)
Q Consensus       130 e~eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~-~~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~SiEE  208 (293)
                      .|+|+|+++||++|++|+|||||||||+||++||+||+|+|| +.+.|+|++||.|+||++||+.||++|++|+.+|+||
T Consensus         2 ~~~mgL~eeylE~IK~GkK~iEvRl~d~krr~ik~GD~IiF~~~~l~v~V~~vr~Y~tF~~mlreepiE~v~p~~~S~ee   81 (111)
T COG4043           2 VHRMGLREEYLELIKAGKKKIEVRLADPKRRQIKPGDKIIFNGDKLKVEVIDVRVYDTFEEMLREEPIENVLPDVPSFEE   81 (111)
T ss_pred             ceeechHHHHHHHHHcccceEEEEecCHhhcCCCCCCEEEEcCCeeEEEEEEEeehhHHHHHHHhcChhhhCCCCccHHH
Confidence            489999999999999999999999999999999999999999 7999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCHhHHhhcceEEEEEEec
Q 022686          209 GVQIYRKFYTEEKERSNGVLAICISKM  235 (293)
Q Consensus       209 gv~~yr~iYskEkE~~yGVvAIeI~l~  235 (293)
                      ||+.||+||++|+|+.|||+||+|+..
T Consensus        82 ~l~~~~~~Y~~~kE~~yGvlaI~ie~i  108 (111)
T COG4043          82 GLRRYRNFYPSEKEKRYGVLAIEIEPI  108 (111)
T ss_pred             HHHHHHHhCcHhHhhccceEEEEEEEc
Confidence            999999999999999999999999865

>cd06541 ASCH ASC-1 homology or ASCH domain, a small beta-barrel domain found in all three kingdoms of life

Probab=99.83  E-value=1.3e-20  Score=150.99  Aligned_cols=100  Identities=17%  Similarity=0.099  Sum_probs=93.7

Q ss_pred             eccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEce----eEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022686          133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNK----CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE  208 (293)
Q Consensus       133 M~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~~----~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~SiEE  208 (293)
                      |++.+++|++|.+|+||+|+|+++++++.+++||.|+|.+    .+.++|++|+.|++| +++.++...+..+|..|+++
T Consensus         2 l~~~~~~~~lI~~G~Ktat~r~~~~~~~~~k~Gd~~i~~~~~~~~~~i~v~~V~~~~~f-~~~~~e~a~~eGegd~sl~~   80 (105)
T cd06541           2 LMFGDRYGQLVVSGRKTIEIRSLDIYEQLPKAGDYLIILDGQQPLAIAEVVKVEIMPMV-NELSEEQEQAEGEGDLTLLY   80 (105)
T ss_pred             ceechHHHHHHHCCCCEEEEEcchhcccCCCCCCEEEEecCCCcEEEEEEEEEEEEECH-HHccHHHHHHcCCCchhHHH
Confidence            6789999999999999999999999999999999999998    899999999999999 67777777777888889999


Q ss_pred             HHHHHHhhCCHhHHhhcceEEEEEE
Q 022686          209 GVQIYRKFYTEEKERSNGVLAICIS  233 (293)
Q Consensus       209 gv~~yr~iYskEkE~~yGVvAIeI~  233 (293)
                      .++.+++||+++++.++||++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~vv~i~F~  105 (105)
T cd06541          81 ELKEHAAFFKEELAPDMLLYAISFE  105 (105)
T ss_pred             HHHHHHHHhhHHhCCCCceEEEEeC
Confidence            9999999999999999999999974

ASCH resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.

>PF04266 ASCH: ASCH domain; InterPro: IPR007374 The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain (IPR002478 from INTERPRO)

Probab=99.66  E-value=3.9e-16  Score=121.55  Aligned_cols=98  Identities=30%  Similarity=0.376  Sum_probs=86.4

Q ss_pred             eccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEce------eEEEEEEEEeecCCHHHHHhccCccccCCCCCCH
Q 022686          133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNK------CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTI  206 (293)
Q Consensus       133 M~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~~------~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~Si  206 (293)
                      |.+.++||++|.+|+||+|+|+.++++..++.++.|+|+.      ...++|++|+.+ +|++|.++...   ..|. |+
T Consensus         1 Lsi~~~~~~~Il~G~Kt~e~R~~~~~~~~~~g~~~iv~~~~~~~~~~~~v~v~~V~~~-~~~e~~~~~a~---~eg~-s~   75 (105)
T PF04266_consen    1 LSIKPEYAELILSGKKTAEIRLWDEKLPKIRGDLVIVFNTDPDGKPVGIVEVTEVEVY-PFSELTEEHAR---LEGE-SL   75 (105)
T ss_dssp             EEECHHHHHHHHTTSSCEEEECSTTTCCTTTTCEEEEETETTTTEEEEEEEEEEEEEE-EHHHHHHHHHH---HHCC--H
T ss_pred             CEechHHHHHHHCCCcEEEEEcccceeccCCCCEEEEEEEecCCcEEEEEEEEEEEEe-hhhhCCHHHHh---Hhcc-CH
Confidence            6789999999999999999999999999988888888752      588899999999 99999988553   3344 99


Q ss_pred             HHHHHHHHhhCCHhHHhhcceEEEEEEec
Q 022686          207 EEGVQIYRKFYTEEKERSNGVLAICISKM  235 (293)
Q Consensus       207 EEgv~~yr~iYskEkE~~yGVvAIeI~l~  235 (293)
                      ++..+.+++||+++.+...||++|+++++
T Consensus        76 e~~~~~~~~~y~~~~~~~~~v~~i~f~~v  104 (105)
T PF04266_consen   76 EEWREEHRDIYPREIEPDDGVVAIEFEVV  104 (105)
T ss_dssp             HHHHHHHHHHCHHHHHCCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHccccccccceEEEEEEEec
Confidence            99999999999999998899999999874

It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation [].; PDB: 1TE7_A 2Z0T_C 1WK2_A 2DP9_A 1T62_A 3S9X_A 2E5O_A 1XNE_A 3IUW_B 1S04_A.

>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb

Probab=98.98  E-value=2.5e-09  Score=83.60  Aligned_cols=94  Identities=21%  Similarity=0.244  Sum_probs=74.4

Q ss_pred             eccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEce----eEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022686          133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNK----CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE  208 (293)
Q Consensus       133 M~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~~----~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~SiEE  208 (293)
                      |.+.++++++|.+|+||+++|..+  ++.+++||.+.+.+    ...++|++|+. .+|.+ +.++.  +-..|..|.++
T Consensus         2 ~~f~~~~~~~I~sG~Kt~t~R~~~--~~~~~~Gd~~~~~~~~~~~~~~~v~~V~~-~~~~~-l~~~~--A~~eG~~s~~~   75 (100)
T cd06552           2 ILFFERYEEAILSGKKTATIRDGG--ESHLKPGDVVEVHTGERIFGEAEITSVEE-KTLGE-LTDED--ARQEGFPSLEE   75 (100)
T ss_pred             eechHHHHHHHHcCCCEEEEeCCC--ccCCCCCCEEEEEECCEEEEEEEEEEEEE-EEhhh-CCHHH--HHhcCCccHHH
Confidence            567789999999999999999975  45699999999862    68889999977 88988 44432  34457779999


Q ss_pred             HHHHHHhhCCHhHHhhcceEEEEEE
Q 022686          209 GVQIYRKFYTEEKERSNGVLAICIS  233 (293)
Q Consensus       209 gv~~yr~iYskEkE~~yGVvAIeI~  233 (293)
                      ..+.++++|+.++.. -=|..|+++
T Consensus        76 ~~~~l~~~Y~~~~~~-~~v~vi~F~   99 (100)
T cd06552          76 LKEALKEIYPGLKDD-DEVYVIEFR   99 (100)
T ss_pred             HHHHHHHHcCCCCCC-CEEEEEEEE
Confidence            999999999987633 336666665

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.

>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)

Probab=98.41  E-value=7.6e-07  Score=69.53  Aligned_cols=53  Identities=21%  Similarity=0.422  Sum_probs=46.4

Q ss_pred             eeeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEc---------eeEEEEEEEEeecCC
Q 022686          131 FELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN---------KCMMLKVQSVCHYDS  186 (293)
Q Consensus       131 ~eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~---------~~l~v~V~~Vr~Y~S  186 (293)
                      |++.+.++||+.+.+|+||.|+|.||..+   ++||.+.+.         ..+.++|+-|-.|..
T Consensus         1 H~LKi~p~yF~~V~~G~KtfEiRkNDRdf---~VGD~L~L~E~~~~~YTGr~~~~~Ityi~~~~~   62 (72)
T PF12961_consen    1 HELKILPEYFEAVLSGRKTFEIRKNDRDF---QVGDILVLREWDNGEYTGREIEAEITYITDYEQ   62 (72)
T ss_pred             CceeecHHHHHHHHCCCceEEEEecCCCC---CCCCEEEEEEecCCCccccEEEEEEEEEeecCC
Confidence            78999999999999999999999999765   699999986         278899999877543

>PRK04980 hypothetical protein; Provisional

Probab=96.40  E-value=0.026  Score=46.87  Aligned_cols=81  Identities=23%  Similarity=0.256  Sum_probs=60.3

Q ss_pred             eeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEE-ce-----eEEEEEEEEeecCCHHHHHhccCccccCCCCCC
Q 022686          132 ELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILL-NK-----CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKT  205 (293)
Q Consensus       132 eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F-~~-----~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~S  205 (293)
                      +|...++|-.+|-+|+||+-+|-  +.-...++||.+.- .+     -..++|++|. +-+|.+|=++   .+...|. |
T Consensus         4 ~itF~~r~~~~ILsGkKTiTiRd--~se~~~~~G~~~~V~~~e~g~~~c~ieI~sV~-~i~f~eLte~---hA~qEg~-s   76 (102)
T PRK04980          4 KITFFERFEADILAGRKTITIRD--ESESHFKPGDVLRVGTFEDDRYFCTIEVLSVS-PVTFDELNEK---HAEQENM-T   76 (102)
T ss_pred             eeeEHHHHHHHHHcCCceEEeeC--CcccCCCCCCEEEEEECCCCcEEEEEEEEEEE-EEehhhCCHH---HHHHhCC-C
Confidence            46778899999999999999998  44678899999876 32     3445666654 4556665443   2233566 8


Q ss_pred             HHHHHHHHHhhCCH
Q 022686          206 IEEGVQIYRKFYTE  219 (293)
Q Consensus       206 iEEgv~~yr~iYsk  219 (293)
                      +++--+.++++|+.
T Consensus        77 L~elk~~i~~iYp~   90 (102)
T PRK04980         77 LPELKQVIAEIYPN   90 (102)
T ss_pred             HHHHHHHHHHHCCC
Confidence            99999999999996

>COG2411 Uncharacterized conserved protein [Function unknown]

Probab=92.42  E-value=1  Score=41.17  Aligned_cols=80  Identities=23%  Similarity=0.285  Sum_probs=60.6

Q ss_pred             eccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEce----eEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022686          133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNK----CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE  208 (293)
Q Consensus       133 M~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~~----~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~SiEE  208 (293)
                      +.+..+|-+.|-+|+|+.-||+.   --..++|+.+....    --.++|++|+ |.--+++=++   ++.+.|..|.||
T Consensus         9 l~f~gkY~~~ii~GkKr~TIR~G---~~~~k~g~eVyIh~~g~i~gkAkIk~V~-~KrV~ELTdE---DAr~DGF~sreE   81 (188)
T COG2411           9 LEFDGKYKDKIIDGKKRTTIRLG---KIVLKPGSEVYIHSGGYIIGKAKIKKVK-TKRVSELTDE---DARLDGFRSREE   81 (188)
T ss_pred             eeechHHHHHHhcCceeEEEecC---cccCCCCCEEEEEECCEEEEEEEEEEEE-EeeHhhhhHH---HHHhcccccHHH
Confidence            67888999999999999999998   34568999988863    2345556554 3444555443   345678999999


Q ss_pred             HHHHHHhhCCH
Q 022686          209 GVQIYRKFYTE  219 (293)
Q Consensus       209 gv~~yr~iYsk  219 (293)
                      .+..++++|+.
T Consensus        82 Li~~LkriYg~   92 (188)
T COG2411          82 LIEELKRIYGE   92 (188)
T ss_pred             HHHHHHHHcCc
Confidence            99999999973

>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.68  E-value=1.1  Score=37.72  Aligned_cols=91  Identities=18%  Similarity=0.233  Sum_probs=58.1

Q ss_pred             ccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEE---ce---eEEEEEEEEeecCCHHHHHhccCccccCCCCCCHH
Q 022686          134 HVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILL---NK---CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIE  207 (293)
Q Consensus       134 ~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F---~~---~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~SiE  207 (293)
                      ....++=..|.+|.|||-||  |.--+..++||++.-   .+   -+..+|++|..- +|.++=+.   -+--.+. ++.
T Consensus         7 TFf~rfe~dilagrKTITIR--D~SEShf~~g~vlrV~r~Ed~~~fc~I~vl~vspv-tld~l~e~---HAeQEnm-~L~   79 (106)
T COG3097           7 TFFQRFEADILAGRKTITIR--DKSESHFKPGDVLRVGRFEDDRYFCTIEVLAVSPV-TLDELTEK---HAEQENM-TLP   79 (106)
T ss_pred             eehhhccHHHhCCCceEEEe--ccchhcCCCCCEEEEEEecCCcEEEEEEEEEeccE-ehhhhhhh---hhhhhcC-CcH
Confidence            34456667899999999999  555678999999973   21   233455555432 34444332   0112344 778


Q ss_pred             HHHHHHHhhCCHhHHhhcceEEEEEE
Q 022686          208 EGVQIYRKFYTEEKERSNGVLAICIS  233 (293)
Q Consensus       208 Egv~~yr~iYskEkE~~yGVvAIeI~  233 (293)
                      |.=+.+..||+.+.+  +=|+..++.
T Consensus        80 eLk~vI~eIYP~~d~--fyVI~f~L~  103 (106)
T COG3097          80 ELKKVIAEIYPNQDQ--FYVIEFQLA  103 (106)
T ss_pred             HHHHHHHHHCCCCcE--EEEEEEEec
Confidence            888999999996654  445555543

>cd06553 ASCH_Ef3133_like ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133

Probab=90.00  E-value=1.9  Score=36.78  Aligned_cols=85  Identities=13%  Similarity=0.144  Sum_probs=57.7

Q ss_pred             cchhhHHHHhcCCceEEEeec----CccccCCCCCCEEEEce-------eEEEEEEEEeecCCHHHHHhccCccccCCCC
Q 022686          135 VQEPFFSFIKDGLETVEGRCT----ISDYNSIGPGSVILLNK-------CMMLKVQSVCHYDSFSEMLEAESLVKVLPGV  203 (293)
Q Consensus       135 Lqe~yF~lIksGkKTIE~RLn----DeKrq~IkvGD~I~F~~-------~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~  203 (293)
                      +..++-++|.+|+||.-.|+.    ++.-.--++||.=+..+       .+.+.-+++.+|..-.+-.-.    +-..|.
T Consensus        12 ~ad~l~~LVl~G~KtAT~s~~~~y~~e~e~~p~vG~~~Ivld~~g~p~cvi~~~~V~~~~f~~vt~~~A~----~EGegd   87 (127)
T cd06553          12 LADELAALVLAGKKTATCSALALYEAEEEPLPKVGDYSIILDGQGKPVCIIETTEVEVVPFNDVTEEFAY----AEGEGD   87 (127)
T ss_pred             HHHHHHHHHHcCCcEEEEechhhcccCCccCCCCCcEEEEECCCCCEEEEEEEEEEEEEEcccCCHHHHH----HhCCCc
Confidence            457788999999999999974    33444578999655542       455566666777665443322    112455


Q ss_pred             CCHHHHHHHHHhhCCHhHHh
Q 022686          204 KTIEEGVQIYRKFYTEEKER  223 (293)
Q Consensus       204 ~SiEEgv~~yr~iYskEkE~  223 (293)
                      .|+++==+..+.||+++...
T Consensus        88 ~sl~~Wr~~h~~ff~~~~~~  107 (127)
T cd06553          88 RSLEYWRKAHEAFFTRELEE  107 (127)
T ss_pred             cCHHHHHHHHHHHHHHHHhh
Confidence            58888888999999876543

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.

>PRK11507 ribosome-associated protein; Provisional

Probab=82.31  E-value=2.4  Score=33.29  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=27.9

Q ss_pred             HHhcCCceEEEeecCccccCCCCCCEEEEcee
Q 022686          142 FIKDGLETVEGRCTISDYNSIGPGSVILLNKC  173 (293)
Q Consensus       142 lIksGkKTIE~RLnDeKrq~IkvGD~I~F~~~  173 (293)
                      +|++|.=.|-+-+...++++|.+||+|.|++.
T Consensus        33 ~I~eg~V~VNGeve~rRgkKl~~GD~V~~~g~   64 (70)
T PRK11507         33 AIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH   64 (70)
T ss_pred             HHHcCceEECCEEecccCCCCCCCCEEEECCE
Confidence            58888878888888889999999999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	293
1s04_A	110	Solution Nmr Structure Of Protein Pf0455 From Pyroc		3e-20
2z0t_A	109	Crystal Structure Of Hypothetical Protein Ph0355 Le		1e-19

>pdb|1S04|A Chain A, Solution Nmr Structure Of Protein Pf0455 From Pyrococcus Furiosus. Northeast Structural Genomics Consortium Target Pfr13 Length = 110

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMM-LKVQSVCHYDSF 187
           +E+E+ +QE F   IK   + +EGR        I PG VI      + ++V+++  Y+SF
Sbjct: 1   MEWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRVYNSF 60
Query: 188 SEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICIS 233
            EMLE E L  VLPGVK+IEEG+Q+YR+FY EEKE+  GV+AI I 
Sbjct: 61  REMLEKEGLENVLPGVKSIEEGIQVYRRFYDEEKEKKYGVVAIEIE 106

>pdb|2Z0T|A Chain A, Crystal Structure Of Hypothetical Protein Ph0355 Length = 109

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMM-LKVQSVCHYDSF 187
           +++E+ +QE +   IK G + +EGR        I PG +I+     + +KV+ +  Y SF
Sbjct: 1   MKWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSF 60
Query: 188 SEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICIS 233
            EMLE E +  VLPGVK+IEEGV++YR+FY EE+E+  GV+AI I 
Sbjct: 61  KEMLEKEGIENVLPGVKSIEEGVKVYRQFYDEEREKKYGVVAIEIE 106
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
1xne_A	113	Hypothetical protein PF0469; GFT structural genomi	1e-37
2z0t_A	109	Putative uncharacterized protein PH0355; alpha/bet	2e-36

>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6 Length = 113

 Score =  128 bits (324), Expect = 1e-37
 Identities = 26/107 (24%), Positives = 51/107 (47%)

Query: 130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSE 189
            + L++++ +   +K G + +E R        I  G  I+ N  +  +V  V  Y++F +
Sbjct: 3   VYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQ 62

Query: 190 MLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMA 236
           +L  E + K+ P   + E+ ++ +   Y + KE   GVLAI    + 
Sbjct: 63  VLREEPIDKIFPDKPSFEKALKRFHNMYPKWKEYRYGVLAIKFRVLG 109

>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A Length = 109

 Score =  125 bits (315), Expect = 2e-36
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILL-NKCMMLKVQSVCHYDSF 187
           +++E+ +QE +   IK G + +EGR        I PG +I+     + +KV+ +  Y SF
Sbjct: 1   MKWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSF 60

Query: 188 SEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAI 230
            EMLE E +  VLPGVK+IEEGV++YR+FY EE+E+  GV+AI
Sbjct: 61  KEMLEKEGIENVLPGVKSIEEGVKVYRQFYDEEREKKYGVVAI 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
2z0t_A	109	Putative uncharacterized protein PH0355; alpha/bet	100.0
1xne_A	113	Hypothetical protein PF0469; GFT structural genomi	100.0
3iuw_A	83	Activating signal cointegrator; NP_814290.1, struc	99.27
1te7_A	103	Hypothetical UPF0267 protein YQFB; alpha + beta, s	98.26
2kku_A	161	Uncharacterized protein; alpha/beta protein, struc	94.14
2dp9_A	124	Hypothetical protein TTHA0113; jellyroll, structur	90.5

>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A

Probab=100.00  E-value=5.6e-41  Score=273.85  Aligned_cols=106  Identities=43%  Similarity=0.769  Sum_probs=103.8

Q ss_pred             ceeeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEce-eEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022686          130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNK-CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE  208 (293)
Q Consensus       130 e~eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~~-~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~SiEE  208 (293)
                      .|+|+|+++||++|++|+||||||+||+||++|++||+|+||+ ++.|+|++|++|+||++||++||+++|+|+++|+||
T Consensus         2 ~h~m~l~~~~f~~I~~G~KtiEiRlnd~k~~~ikvGD~I~f~~~~l~~~V~~v~~Y~sF~~ll~~e~~~~~~p~~~s~ee   81 (109)
T 2z0t_A            2 KWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSFKEMLEKEGIENVLPGVKSIEE   81 (109)
T ss_dssp             EEEECCCHHHHHHHHTTSCCEEEEECCTTGGGCCTTCEEEEGGGTEEEEEEEEEEESCHHHHHHHHCHHHHSTTCCCHHH
T ss_pred             eEEEEcChHHHHHHHcCCCEEEEEecchhhhcCCCCCEEEECCCEEEEEEEEEEccCCHHHHHHhcChhhcCCCCCCHHH
Confidence            5999999999999999999999999999999999999999987 899999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCHhHHhhcceEEEEEEec
Q 022686          209 GVQIYRKFYTEEKERSNGVLAICISKM  235 (293)
Q Consensus       209 gv~~yr~iYskEkE~~yGVvAIeI~l~  235 (293)
                      |+++||+||++|||++||||||+|++.
T Consensus        82 ~v~~~~~~Y~~e~E~~~GVlaI~i~~~  108 (109)
T 2z0t_A           82 GVKVYRQFYDEEREKKYGVVAIEIEPI  108 (109)
T ss_dssp             HHHHHHTTCCHHHHHHHCEEEEEEEEC
T ss_pred             HHHHHHHhCCHHHHHhcCEEEEEEEEc
Confidence            999999999999999999999999974

>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6

Probab=100.00  E-value=7.2e-41  Score=274.54  Aligned_cols=108  Identities=24%  Similarity=0.472  Sum_probs=105.6

Q ss_pred             cceeeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEceeEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022686          129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE  208 (293)
Q Consensus       129 ~e~eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~~~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~SiEE  208 (293)
                      ..|+|+|+++||++|++|+||||||+||+||++|++||+|+|++++.++|++|++|+||++||++|++++|+|+.+|+||
T Consensus         2 ~~h~m~l~~~~F~~I~sG~KtiEiR~nd~~~~~i~vGD~I~f~~~l~~~V~~v~~Y~sF~~ll~~e~~~~v~p~~~s~ee   81 (113)
T 1xne_A            2 KVYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKPSFEK   81 (113)
T ss_dssp             CEEEECCCHHHHHHHHHTCCCEEECCCTTTTTTCCTTCEEEETTTEEEEEEEEEECSSHHHHHHHSCHHHHCSSCCCHHH
T ss_pred             ceEEEecChHHHHHHHcCCcEEEEEecchhhhccCCCCEEEEccceEEEEEEEEecCCHHHHHHhcCHHhcCCCCCCHHH
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCHhHHhhcceEEEEEEecC
Q 022686          209 GVQIYRKFYTEEKERSNGVLAICISKMA  236 (293)
Q Consensus       209 gv~~yr~iYskEkE~~yGVvAIeI~l~~  236 (293)
                      |+++||+||++|||++||||||+|++..
T Consensus        82 ~~~~~~~~Y~~e~E~~~GVvaI~i~~~~  109 (113)
T 1xne_A           82 ALKRFHNMYPKWKEYRYGVLAIKFRVLG  109 (113)
T ss_dssp             HHHHHTTSSSSSCCCCCCCEEEEEEESS
T ss_pred             HHHHHHHhCCHHHHHhcCEEEEEEEEcc
Confidence            9999999999999999999999999864

>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}

Probab=99.27  E-value=6.4e-12  Score=98.69  Aligned_cols=55  Identities=20%  Similarity=0.315  Sum_probs=48.4

Q ss_pred             hccceeeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEc---------eeEEEEEEEEeec
Q 022686          127 KAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN---------KCMMLKVQSVCHY  184 (293)
Q Consensus       127 ~~~e~eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~---------~~l~v~V~~Vr~Y  184 (293)
                      .+..|+|.|+++||++|++|+||+|+|+||.+   +++||.|+|.         +.+.++|+.|.-|
T Consensus         6 ~~~~H~lki~~~~F~~V~~G~Kt~EiR~nDr~---~~vGD~l~l~E~~~g~yTGr~i~~~Vt~i~d~   69 (83)
T 3iuw_A            6 HPTIHTLKIETEFFKAVKERRKTFEIRKNDRN---FQVGDILILEEYMNGMYLDDECEAEVIYITDY   69 (83)
T ss_dssp             CCCEEEEEEEHHHHHHHHTTSCCEEEEECCSC---CCTTCEEEEEEEETTEEEEEEEEEEEEEEECT
T ss_pred             cceEEEEEcCHHHHHHHHcCCcEEEEEecccC---CCCCCEEEEEEccCCCccCcEEEEEEEEEccc
Confidence            35679999999999999999999999999954   9999999985         3788899999544

>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7

Probab=98.26  E-value=1.4e-06  Score=69.08  Aligned_cols=92  Identities=14%  Similarity=0.168  Sum_probs=69.7

Q ss_pred             eeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEE--c--e--eEEEEEEEEeecCCHHHHHhccCccccCCCCCC
Q 022686          132 ELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILL--N--K--CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKT  205 (293)
Q Consensus       132 eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F--~--~--~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~S  205 (293)
                      .|.+.+++.++|.+|+||+.+|.  .+....++||.+..  +  +  -..++|++|+ +..|.++=++   .+...|. |
T Consensus         5 ~i~f~~~~~~~Il~G~KT~T~R~--~~e~~~~~Gd~~~v~~~~~~~~~~~i~vt~V~-~~~~~eitee---~A~~EG~-s   77 (103)
T 1te7_A            5 DITFFQRFQDDILAGRKTITIRD--ESESHFKTGDVLRVGRFEDDGYFCTIEVTATS-TVTLDTLTEK---HAEQENM-T   77 (103)
T ss_dssp             SCCCCHHHHHHHHTCCCEEEEEC--GGGCCCCTTSEEEEEETTTEEEEEEEEEEEEE-EECSTTTSTH---HHHHTTS-C
T ss_pred             EEEEcHHHHHHHHCCCCEEEEeC--CCCCCCCCCCEEEEEECCCCcEEEEEEEEEEE-EEcHHHhCHH---HHHHcCC-C
Confidence            37889999999999999999997  34456899999977  2  1  3556777775 5666666442   1234666 9


Q ss_pred             HHHHHHHHHhhCCHhHHhhcceEEEEEEe
Q 022686          206 IEEGVQIYRKFYTEEKERSNGVLAICISK  234 (293)
Q Consensus       206 iEEgv~~yr~iYskEkE~~yGVvAIeI~l  234 (293)
                      +++-.+.+++||+.+.+    |..|++++
T Consensus        78 l~~~~~~~~~iYp~~~~----v~vI~F~~  102 (103)
T 1te7_A           78 LTELKKVIADIYPGQTQ----FYVIEFKC  102 (103)
T ss_dssp             HHHHHHHHHHHCSCCSC----EEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCC----EEEEEEEE
Confidence            99999999999986544    88888875

>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}

Probab=94.14  E-value=0.22  Score=43.29  Aligned_cols=90  Identities=14%  Similarity=0.219  Sum_probs=64.6

Q ss_pred             eccchhhHHHHh-cCCceEEEeecCccccCCCCCCEEEEce-------eEEEEEEEEeecCCHHHHHhccCccccCCCCC
Q 022686          133 LHVQEPFFSFIK-DGLETVEGRCTISDYNSIGPGSVILLNK-------CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVK  204 (293)
Q Consensus       133 M~Lqe~yF~lIk-sGkKTIE~RLnDeKrq~IkvGD~I~F~~-------~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~  204 (293)
                      |-|.++|-+.|- +|+|++ +|=.+ -+.++++||.|+|..       .=.++|.+|-.|++-.+|.+..+-.   -|. 
T Consensus        31 lSIkpey~~rIf~~GkK~f-lrr~~-v~~~l~~Gd~vviYaS~P~~~iVGea~I~~Ii~~~~P~~lWe~~~d~---~gI-  104 (161)
T 2kku_A           31 YPIPKRFMDRFFKKGKDVF-VKPAT-VWKELKPGMKFVFYQSHEDTGFVGEARIKRVVLSENPMQFFETFGDR---VFL-  104 (161)
T ss_dssp             ECCSSSTTHHHHHHSCEEE-EESSC-SCTTCCTTEEEEECCCSTTCBCCEEEEEEEEEEESCTHHHHHHTSTT---BSS-
T ss_pred             EecCHHHHHHHHhcCceEE-EeccC-cccccCCCCEEEEEEcCCCcEEEEEEEEEEEEecCCHHHHHHHhCcc---cCc-
Confidence            668899999999 999999 76222 456899999999973       3457899999999999999985522   234 


Q ss_pred             CHHHHHHHHHhhCCHhHHhhcc----------eEEEEEEe
Q 022686          205 TIEEGVQIYRKFYTEEKERSNG----------VLAICISK  234 (293)
Q Consensus       205 SiEEgv~~yr~iYskEkE~~yG----------VvAIeI~l  234 (293)
                      |-+|    +++||. .++. ||          .+||+|+.
T Consensus       105 Tkee----f~~Yy~-g~~~-w~~~~~~~~~~~~~aI~L~~  138 (161)
T 2kku_A          105 TKDE----LKEYMK-SQER-WGRRRESKKKKLWMAIELED  138 (161)
T ss_dssp             CHHH----HHHHHH-HHHH-TSSCCCCSSCCCEEEEEEEE
T ss_pred             CHHH----HHHHhc-cccc-ccccccccccccEEEEEecc
Confidence            4333    444443 3333 33          68888874

>2dp9_A Hypothetical protein TTHA0113; jellyroll, structural genomics, NPPSFA, national project on structural and functional analyses; 1.90A {Thermus thermophilus} SCOP: b.122.1.5 PDB: 1wk2_A

Probab=90.50  E-value=0.51  Score=38.26  Aligned_cols=56  Identities=27%  Similarity=0.204  Sum_probs=40.2

Q ss_pred             eccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEc--ee--EEEEEEEEeecCCHHHHHhc
Q 022686          133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN--KC--MMLKVQSVCHYDSFSEMLEA  193 (293)
Q Consensus       133 M~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~--~~--l~v~V~~Vr~Y~SF~eLLe~  193 (293)
                      |-+.++|-++|-+|.||+|+|--..++    .|. |.+.  ..  =.|+|+++..+.|-+++.+.
T Consensus        11 LSIkqpyA~lIl~G~K~~E~R~~~t~~----rg~-v~IhatG~ivG~~~i~d~~g~~~~eel~~~   70 (124)
T 2dp9_A           11 LIVREPYASLIVDGRKVWEIRRRKTRH----RGP-LGIVSGGRLIGQADLVGVEGPFSVEELLAH   70 (124)
T ss_dssp             EECCTTHHHHHHTTCCCEEEESSCCCC----CEE-EEEEETTEEEEEEEEEEEEEEECHHHHGGG
T ss_pred             EEEecHHHHHHHCCCceEEeeCCCCCC----CCE-EEEEECCCEEEEEEEEEEecCCCHHHHHHH
Confidence            668999999999999999999876443    254 4443  33  34577787766677776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	293
d1xnea_	113	b.122.1.6 (A:) Hypothetical protein PF0470 {Pyroco	2e-38
d1s04a_	110	b.122.1.6 (A:) Hypothetical protein PF0455 {Pyroco	5e-38

>d1xnea_ b.122.1.6 (A:) Hypothetical protein PF0470 {Pyrococcus furiosus [TaxId: 2261]} Length = 113

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0470
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  129 bits (326), Expect = 2e-38
 Identities = 26/100 (26%), Positives = 50/100 (50%)

Query: 131 FELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEM 190
           + L++++ +   +K G + +E R        I  G  I+ N  +  +V  V  Y++F ++
Sbjct: 4   YRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQV 63

Query: 191 LEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAI 230
           L  E + K+ P   + E+ ++ +   Y + KE   GVLAI
Sbjct: 64  LREEPIDKIFPDKPSFEKALKRFHNMYPKWKEYRYGVLAI 103

>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus furiosus [TaxId: 2261]} Length = 110

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0455
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  128 bits (323), Expect = 5e-38
 Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILL-NKCMMLKVQSVCHYDSF 187
           +E+E+ +QE F   IK   + +EGR        I PG VI      + ++V+++  Y+SF
Sbjct: 1   MEWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRVYNSF 60

Query: 188 SEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAI 230
            EMLE E L  VLPGVK+IEEG+Q+YR+FY EEKE+  GV+AI
Sbjct: 61  REMLEKEGLENVLPGVKSIEEGIQVYRRFYDEEKEKKYGVVAI 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1xnea_	113	Hypothetical protein PF0470 {Pyrococcus furiosus [	100.0
d1s04a_	110	Hypothetical protein PF0455 {Pyrococcus furiosus [	100.0
d1te7a_	103	Hypothetical protein YqfB {Escherichia coli [TaxId	92.44
d2dp9a1	120	Hypothetical protein TTHA0113 {Thermus thermophilu	81.11

>d1xnea_ b.122.1.6 (A:) Hypothetical protein PF0470 {Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0470
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=8.5e-43  Score=284.61  Aligned_cols=108  Identities=24%  Similarity=0.476  Sum_probs=105.5

Q ss_pred             ceeeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEceeEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHHH
Q 022686          130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEG  209 (293)
Q Consensus       130 e~eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~~~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~SiEEg  209 (293)
                      .|+|+|+++||++|++|+|||||||||+||++|++||+|+|+|++.|+|++|++|+||++||++|++++|+||.+|+|+|
T Consensus         3 ~~~m~l~~~~f~~Ik~G~K~iE~Rl~d~kr~~ik~GD~I~F~~~~~~kV~~v~~Y~sF~ell~~e~l~~vlp~~~s~eeg   82 (113)
T d1xnea_           3 VYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKPSFEKA   82 (113)
T ss_dssp             EEEECCCHHHHHHHHHTCCCEEECCCTTTTTTCCTTCEEEETTTEEEEEEEEEECSSHHHHHHHSCHHHHCSSCCCHHHH
T ss_pred             eEEEecCchhHHHHHcCCCEEEEEccchhHhhCCCCCEEEEEeeEEEEEEEEEEcCCHHHHHHHcCHHhhCCCCCCHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCHhHHhhcceEEEEEEecCC
Q 022686          210 VQIYRKFYTEEKERSNGVLAICISKMAT  237 (293)
Q Consensus       210 v~~yr~iYskEkE~~yGVvAIeI~l~~~  237 (293)
                      |++||+|||+|||++||||||+|++...
T Consensus        83 l~~~~~~Ys~E~E~k~GVvAI~i~lI~~  110 (113)
T d1xnea_          83 LKRFHNMYPKWKEYRYGVLAIKFRVLGR  110 (113)
T ss_dssp             HHHHTTSSSSSCCCCCCCEEEEEEESSS
T ss_pred             HHHHHHHCCHHHHHhcCEEEEEEEEcCC
Confidence            9999999999999999999999998653

>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0455
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=6.3e-42  Score=278.23  Aligned_cols=106  Identities=46%  Similarity=0.754  Sum_probs=103.6

Q ss_pred             ceeeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEc-eeEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022686          130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN-KCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE  208 (293)
Q Consensus       130 e~eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~-~~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~SiEE  208 (293)
                      +|+|+|+++||++|++|+|||||||||+||++|++||+|.|+ +++.|+|++|++|+||++||++||+++++||.+|+|+
T Consensus         2 ~~~m~L~~~~F~~Ik~G~K~IE~Rl~d~kr~~ik~GD~I~F~~~~l~vkV~~v~~y~sF~ell~~e~l~~~~p~~~s~ee   81 (110)
T d1s04a_           2 EWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRVYNSFREMLEKEGLENVLPGVKSIEE   81 (110)
T ss_dssp             CEEECCCHHHHHHHHHTTSSCCCCCCCHHHHHCCSSSCEEETTTTEEEEEEECCCBSCHHHHHHHTTSTTTSTTCSCHHH
T ss_pred             eEEEecCcchHHHHHcCCCEEEEEechhhHhhCCCCCEEEEeCCeEEEEEEEEEEcCCHHHHHHhcCccccCCCCCCHHH
Confidence            699999999999999999999999999999999999999996 5899999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCHhHHhhcceEEEEEEec
Q 022686          209 GVQIYRKFYTEEKERSNGVLAICISKM  235 (293)
Q Consensus       209 gv~~yr~iYskEkE~~yGVvAIeI~l~  235 (293)
                      |+++||+|||+|||++||||||+|++.
T Consensus        82 ~l~~~~~~Ys~E~E~~yGVvAI~i~~I  108 (110)
T d1s04a_          82 GIQVYRRFYDEEKEKKYGVVAIEIEPL  108 (110)
T ss_dssp             HHHHHHHHSCHHHHHHTCBCCCEEECT
T ss_pred             HHHHHHHHCCHHHHHhcCEEEEEEEEe
Confidence            999999999999999999999999975

>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: yqfB-like
domain: Hypothetical protein YqfB
species: Escherichia coli [TaxId: 562]

Probab=92.44  E-value=0.31  Score=37.84  Aligned_cols=81  Identities=16%  Similarity=0.227  Sum_probs=54.2

Q ss_pred             eccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEE-c---e--eEEEEEEEEe--ecCCHHHHHhccCccccCCCCC
Q 022686          133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILL-N---K--CMMLKVQSVC--HYDSFSEMLEAESLVKVLPGVK  204 (293)
Q Consensus       133 M~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F-~---~--~l~v~V~~Vr--~Y~SF~eLLe~Egl~kvlPg~~  204 (293)
                      |.-.+++=..|.+|+|||-||  |+--...++|+.+.- +   +  -+..+|.+|.  .|+...+.=.      --.+. 
T Consensus         6 ITFFeRfe~dIlsGkKTITIR--D~SEshy~pG~~v~V~t~E~~~~fc~I~IlsV~pi~fd~Lne~HA------~QEnM-   76 (103)
T d1te7a_           6 ITFFQRFQDDILAGRKTITIR--DESESHFKTGDVLRVGRFEDDGYFCTIEVTATSTVTLDTLTEKHA------EQENM-   76 (103)
T ss_dssp             CCCCHHHHHHHHTCCCEEEEE--CGGGCCCCTTSEEEEEETTTEEEEEEEEEEEEEEECSTTTSTHHH------HHTTS-
T ss_pred             eehhHhhhHHHhcCCceEEec--cchhcccCCCCEEEEEEccCCCEEEEEEEEEEeeecHHHhhHHHH------hhcCC-
Confidence            555677788999999999999  666678899999973 3   1  2333444443  3433222111      11345 


Q ss_pred             CHHHHHHHHHhhCCHhHH
Q 022686          205 TIEEGVQIYRKFYTEEKE  222 (293)
Q Consensus       205 SiEEgv~~yr~iYskEkE  222 (293)
                      ++++.=+.++.||+.+.+
T Consensus        77 ~L~eLK~vI~eIYP~~~~   94 (103)
T d1te7a_          77 TLTELKKVIADIYPGQTQ   94 (103)
T ss_dssp             CHHHHHHHHHHHCSCCSC
T ss_pred             CHHHHHHHHHHHCCCCce
Confidence            788888999999996554

>d2dp9a1 b.122.1.5 (A:1-120) Hypothetical protein TTHA0113 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Hypothetical protein TTHA0113
domain: Hypothetical protein TTHA0113
species: Thermus thermophilus [TaxId: 274]

Probab=81.11  E-value=0.46  Score=36.67  Aligned_cols=58  Identities=26%  Similarity=0.221  Sum_probs=40.0

Q ss_pred             eeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEc-ee--EEEEEEEEeecCCHHHHHhc
Q 022686          132 ELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN-KC--MMLKVQSVCHYDSFSEMLEA  193 (293)
Q Consensus       132 eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~-~~--l~v~V~~Vr~Y~SF~eLLe~  193 (293)
                      -+-+.++|-.+|..|.||||+|--.-+++    |...+-. .+  -.++..++..|-+-.+....
T Consensus         7 ~Lsi~QPwA~lI~~G~K~iE~R~w~t~~R----G~l~Iha~~k~~~~~~l~d~~~~~~~~~~~~~   67 (120)
T d2dp9a1           7 GLIVREPYASLIVDGRKVWEIRRRKTRHR----GPLGIVSGGRLIGQADLVGVEGPFSVEELLAH   67 (120)
T ss_dssp             EEECCTTHHHHHHTTCCCEEEESSCCCCC----EEEEEEETTEEEEEEEEEEEEEEECHHHHGGG
T ss_pred             eeEEeCcHHHHHHcCCCeeeeccCCCCCC----ccEEEEEcccCCCchhHHHHhcccchhhhhhc
Confidence            37789999999999999999999877665    5433332 22  23466666666665555443