Citrus Sinensis ID: 022691

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEILCPRCGLRWPNQVPKAEILDEEEVPNATIQSQPAQGPKRKRTKTNETHAKDAVGCGSSQSSVPNSDFRRITRRSSRPASQS
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccEEEEEEEcccccEEEEEEEccccHHHHccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccEEcccccEEEcccHHHHHHHHHHHccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccEEEEEccccccccEEEEEEEccccHHHHHcccccHHHHHHHHHHHHHHHHcccccccEcHHHHHHHHcccccccccccccccccccHHHccccHHHHHHHHHHHHHcccEEEccccEEEccHHHHHHHHHHHHHcccccHHHHHHEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccEcccccccccccc
Coil and Loop (DISEMBL)
MPSLNWKHHALVQALMtrgplkekdFHAIFsgltgkspgahqglFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLstqgsqllngplpaafrnftmsqKEKTLDEFVQDqwlcctpdgkiglgvrscldlrgwfrnldvpfceVCNEAVVkgeilcprcglrwpnqvpkaeildeeevpnatiqsqpaqgpkrkrtktnethakdavgcgssqssvpnsdfrritrrssrpasqs
Flexible Loop (DISEMBL)
mpslnwkhHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEILCPRCGLRWPNQVPKAEildeeevpnatiqsqpaqgpkrkrtktnethakdavgcgssqssvpnsdfrritrrssrpasqs
Low Complexity Region (SEG)
MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEILCPRCGLRWPNQVPKAEILDEEEVPNATIQSQPAQGPKRKRTKTNETHAKDAVGCGSSQSSVPNSDFRRITRRSSRPASQS
Disordered region (IsUnstruct)
*****WKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEILCPRCGLRWPNQVPK******************************************************************
Disordered Region (DISOPRED)
****NWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIR*****************************KEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEILCPRCGLRWPNQVPKAE****************************************************************
Disordered Region (DISEMBL)
MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEILCPRCGLRWPNQVPKAEILDEEEVPN*********************HAKDA*****************************
Disordered Region (DISPRO)
**SLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLE**********************FTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEILCPRCGLRWPNQVP*******************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEILCPRCGLRWPNQVPKAEILDEEEVPNATIQSQPAQGPKRKRTKTNETHAKDAVGCGSSQSSVPNSDFRRITRRSSRPASQS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
Q5RAZ5	266	Non-structural maintenanc	yes	no	0.686	0.755	0.237	6e-11
Q8WV22	266	Non-structural maintenanc	yes	no	0.686	0.755	0.233	1e-10
Q499U6	266	Non-structural maintenanc	yes	no	0.761	0.838	0.234	9e-10
Q3T0X7	266	Non-structural maintenanc	yes	no	0.761	0.838	0.234	4e-09
Q9D720	266	Non-structural maintenanc	yes	no	0.686	0.755	0.225	8e-09
Q6PAF4	270	Non-structural maintenanc	N/A	no	0.740	0.803	0.208	2e-07
Q6P881	270	Non-structural maintenanc	yes	no	0.802	0.870	0.209	1e-06

>sp|Q5RAZ5|NSE1_PONAB Non-structural maintenance of chromosomes element 1 homolog OS=Pongo abelii GN=NSMCE1 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 98/248 (39%), Gaps = 47/248 (18%)

Query: 8   HHALVQALMTRGPLKEKDFHAIFSG-LTGKSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
           H   +Q LMT G L+E D   +           A      +++ NIN  L S   E++  
Sbjct: 15  HRRFLQLLMTHGVLEEWDVKRLQRHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKRG 74

Query: 67  RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
             +  G+  Y +VN      SK+ T +   ++  F+  LE I       GS +NI     
Sbjct: 75  VTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSETGFGSSTNI----- 129

Query: 127 RLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCL 186
              NLV   +G ++               + E+ L +FVQ++WL    +G+  L  R+ L
Sbjct: 130 --LNLVDQLKGKKMRK------------KEAEQVLQKFVQNKWL-IEKEGEFTLHGRAIL 174

Query: 187 DLRGWFRNL---DVPFCEVCNEAVVKG-----------------------EILCPRCGLR 220
           ++  + R      V  C +C+  +++G                       E  CP C   
Sbjct: 175 EMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 234

Query: 221 WPNQVPKA 228
           WP+++PK 
Sbjct: 235 WPHEIPKV 242

Component of the SMC5-SMC6 complex, a complex involved in repair of DNA double-strand breaks by homologous recombination. The complex may promote sister chromatid homologous recombination by recruiting the SMC1-SMC3 cohesin complex to double-strand breaks. The complex is required for telomere maintenance via recombination and mediates sumoylation of shelterin complex (telosome) components. Has in vitro ubiquitin ligase activity in presence of NDNL2. Is involved in positive regulation of response to DNA damage stimulus.
Pongo abelii (taxid: 9601)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8WV22|NSE1_HUMAN Non-structural maintenance of chromosomes element 1 homolog OS=Homo sapiens GN=NSMCE1 PE=1 SV=5

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 98/248 (39%), Gaps = 47/248 (18%)

Query: 8   HHALVQALMTRGPLKEKDFHAIFSG-LTGKSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
           H   +Q LMT G L+E D   + +         A      +++ NIN  L S   E++  
Sbjct: 15  HRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKRG 74

Query: 67  RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
             +  G+  Y +VN      SK+ T +   ++  F+  LE I        S +NI     
Sbjct: 75  VTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSETGFASSTNI----- 129

Query: 127 RLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCL 186
              NLV   +G ++               + E+ L +FVQ++WL    +G+  L  R+ L
Sbjct: 130 --LNLVDQLKGKKMRK------------KEAEQVLQKFVQNKWL-IEKEGEFTLHGRAIL 174

Query: 187 DLRGWFRNL---DVPFCEVCNEAVVKG-----------------------EILCPRCGLR 220
           ++  + R      V  C +C+  +++G                       E  CP C   
Sbjct: 175 EMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 234

Query: 221 WPNQVPKA 228
           WP+++PK 
Sbjct: 235 WPHEIPKV 242

Component of the SMC5-SMC6 complex, a complex involved in DNA double-strand breaks by homologous recombination. The complex may promote sister chromatid homologous recombination by recruiting the SMC1-SMC3 cohesin complex to double-strand breaks. The complex is required for telomere maintenance via recombination in ALT (alternative lengthening of telomeres) cell lines and mediates sumoylation of shelterin complex (telosome) components which is proposed to lead to shelterin complex disassembly in ALT-associated PML bodies (APBs). Has in vitro ubiquitin ligase activity in presence of NDNL2. Is involved in positive regulation of response to DNA damage stimulus.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q499U6|NSE1_RAT Non-structural maintenance of chromosomes element 1 homolog OS=Rattus norvegicus GN=Nsmce1 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 108/273 (39%), Gaps = 50/273 (18%)

Query: 8   HHALVQALMTRGPLKEKDFHAIFSG-LTGKSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
           H   +Q LMT G L+E +   + +         A      +++ NIN  L S   E++  
Sbjct: 15  HRRFLQLLMTHGVLEEWEVRRLQNHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKKG 74

Query: 67  RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
             +  G+  Y +VN      SK+ T +   ++  F+  LE I        S +NI     
Sbjct: 75  ITEDDGRPIYALVNLATTSVSKMATDFAENELDLFRKALELIVDSETGFASSTNI----- 129

Query: 127 RLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCL 186
              NLV   +G ++               + E+ L +FVQ +WL    +G+  L  R+ L
Sbjct: 130 --LNLVDQLKGKKMRK------------KEAEQVLQKFVQSKWL-IEKEGEFTLHGRAIL 174

Query: 187 DLRGWFRNL---DVPFCEVCNEAVVKG-----------------------EILCPRCGLR 220
           ++  + R      V  C +C+  +++G                       E  CP C   
Sbjct: 175 EMEQFIRESYPDAVKMCNICHSLLIQGQSCETCGIRMHLPCVAKYFQSTAEPRCPHCNDY 234

Query: 221 WPNQVPKAEILDEEEVPNATIQSQPAQGPKRKR 253
           WP+ +P  E+ D E+   A I S+ ++   R R
Sbjct: 235 WPHDIP--EVFDPEKEREAGI-SKSSRKSLRTR 264

Component of the SMC5-SMC6 complex, a complex involved in repair of DNA double-strand breaks by homologous recombination. The complex may promote sister chromatid homologous recombination by recruiting the SMC1-SMC3 cohesin complex to double-strand breaks. The complex is required for telomere maintenance via recombination and mediates sumoylation of shelterin complex (telosome) components. Has in vitro ubiquitin ligase activity in presence of NDNL2. Is involved in positive regulation of response to DNA damage stimulus.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q3T0X7|NSE1_BOVIN Non-structural maintenance of chromosomes element 1 homolog OS=Bos taurus GN=NSMCE1 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 105/273 (38%), Gaps = 50/273 (18%)

Query: 8   HHALVQALMTRGPLKEKDFHAIFSG-LTGKSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
           H   +Q LMT G L+E D   +           A      +++  IN  L S   E++  
Sbjct: 15  HRRFLQLLMTHGVLEECDVKRLQKHCYKVHDCNATVEKLEDFINTINSVLESLYIEIKKG 74

Query: 67  RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
             +  G+  Y +VN      SK+ + +   ++  F+  LE I        S +NI     
Sbjct: 75  VTEDDGRPIYALVNLATTSVSKMASDFAENELDLFRKALELIIDSDTGFASSTNI----- 129

Query: 127 RLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCL 186
              NLV   +G ++               + E  L +FVQ++WL    +G+  L  R+ L
Sbjct: 130 --LNLVDQLKGKKMRK------------KEAEHVLQKFVQNKWL-IEKEGEFTLHGRAIL 174

Query: 187 DLRGWFRNL---DVPFCEVCNEAVVKG-----------------------EILCPRCGLR 220
           ++  + R      V  C +C   +++G                       E  CP C   
Sbjct: 175 EMDQYIRETYPDAVKVCNICRSLLIQGQSCETCGIRMHLPCVAKYFQSSSEPHCPHCNDY 234

Query: 221 WPNQVPKAEILDEEEVPNATIQSQPAQGPKRKR 253
           WP++VP  E+ D E+    T  S+  + P R R
Sbjct: 235 WPHEVP--EVFDPEK-ERETGMSRSNKRPSRSR 264

Component of the SMC5-SMC6 complex, a complex involved in repair of DNA double-strand breaks by homologous recombination. The complex may promote sister chromatid homologous recombination by recruiting the SMC1-SMC3 cohesin complex to double-strand breaks. The complex is required for telomere maintenance via recombination and mediates sumoylation of shelterin complex (telosome) components. May be a growth suppressor that facilitates the entry of the cell into cell cycle arrest (By similarity). Has in vitro ubiquitin ligase activity in presence of NDNL2. Is involved in positive regulation of response to DNA damage stimulus.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9D720|NSE1_MOUSE Non-structural maintenance of chromosomes element 1 homolog OS=Mus musculus GN=Nsmce1 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 96/248 (38%), Gaps = 47/248 (18%)

Query: 8   HHALVQALMTRGPLKEKDFHAIFSG-LTGKSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
           H   +Q LMT G L+E +   + +         A      +++ NIN  L S   E++  
Sbjct: 15  HRRFLQLLMTHGVLEEWEVRRLQNHCYQVHDRNATVDKLEDFINNINSVLESLYIEIKKG 74

Query: 67  RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
             +  G+  Y +VN      SK+ T +   ++  F+  LE I        S +NI     
Sbjct: 75  VTEDDGRPIYALVNLATTSVSKMATDFAENELDLFRKALELIVDSETGFASSTNI----- 129

Query: 127 RLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCL 186
              NLV   +G ++               + E+ L +FVQ +WL    +G+  L  R+ L
Sbjct: 130 --LNLVDQLKGKKMRK------------KEAEQVLQKFVQSKWL-IEKEGEFTLHGRAIL 174

Query: 187 DLRGWFRNL---DVPFCEVCNEAVVKG-----------------------EILCPRCGLR 220
           ++  + R      V  C +C+  +++G                       E  CP C   
Sbjct: 175 EMEQFIRESYPDSVKMCNICHGLLIQGQSCETCGIRMHLPCVAKYFQSIPEPHCPHCNDY 234

Query: 221 WPNQVPKA 228
           WP+ +P+ 
Sbjct: 235 WPHDIPEV 242

Component of the SMC5-SMC6 complex, a complex involved in repair of DNA double-strand breaks by homologous recombination. The complex may promote sister chromatid homologous recombination by recruiting the SMC1-SMC3 cohesin complex to double-strand breaks. The complex is required for telomere maintenance via recombination and mediates sumoylation of shelterin complex (telosome) components. Has in vitro ubiquitin ligase activity in presence of NDNL2. Is involved in positive regulation of response to DNA damage stimulus.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6PAF4|NSE1_XENLA Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus laevis GN=nsmce1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 109/283 (38%), Gaps = 66/283 (23%)

Query: 4   LNWKHHALVQALMTRGPLKEKDFHAIFSGL--TGKSPGAHQGLFNEYLLNINKELSSCQF 61
           +N  H   +QALM+ G ++     A+        K    H  L ++++  +N+ L     
Sbjct: 5   INESHQRFLQALMSHGIMEGSAVRALHRHCCELHKVHYMHDKL-DDFVGVLNRHLQPLFM 63

Query: 62  ELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNI 121
            +     +  G   Y +VN V ++ +K+ + Y   ++  F+  +E I   +   G  ++I
Sbjct: 64  TIEKGVGEEDGLTYYALVNRVENDITKMASDYAENELELFRKTMELII--LSDNGFATSI 121

Query: 122 EALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKE--KTLDEFVQDQWLCCTPDGKIG 179
             LN                   L    ++  M +KE  + L  FVQ++WL    +G+  
Sbjct: 122 SILN-------------------LADELQSKKMKKKEVEQLLQSFVQEKWLI-GRNGEYT 161

Query: 180 LGVRSCLDLRGWFRNL--DVP-FCEVCNEAVVKGEI-----------------------L 213
           L  R  ++L  + RN   DV   C VC +  ++ ++                        
Sbjct: 162 LHTRCIMELEHYIRNTYQDVAKICNVCRKVAIQSQLCENCGIPLHLQCAGKYFHGKANPT 221

Query: 214 CPRCGLRWPNQVPKAEILDEEEVPNATIQSQPAQGPKRKRTKT 256
           CP C   WP+++P              +    +QGP   +T+T
Sbjct: 222 CPNCNESWPHEIPD-------------LNQVSSQGPSHSQTET 251

Component of the SMC5-SMC6 complex, a complex involved in repair of DNA double-strand breaks by homologous recombination. The complex may promote sister chromatid homologous recombination by recruiting the SMC1-SMC3 cohesin complex to double-strand breaks. The complex is required for telomere maintenance via recombination and mediates sumoylation of shelterin complex (telosome) components. Has in vitro ubiquitin ligase activity in presence of ndnl2. Is involved in positive regulation of response to DNA damage stimulus.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6P881|NSE1_XENTR Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus tropicalis GN=nsmce1 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 117/291 (40%), Gaps = 56/291 (19%)

Query: 4   LNWKHHALVQALMTRGPLKEKDFHAIFSGL--TGKSPGAHQGLFNEYLLNINKELSSCQF 61
           +N  H   +Q LM+ G ++     A+        K    H  L ++++  +NK L     
Sbjct: 5   INESHQRFLQVLMSHGIMESSLVRALHRHCCEVHKVNYMHDNL-DDFVGVLNKHLQPLFM 63

Query: 62  ELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNI 121
           ++     +  G   Y +VN V ++ +K+ + Y   ++  F+  +E I   +   G    I
Sbjct: 64  KIEKGVGEEDGLTYYALVNRVENDITKMASDYAENELELFRKTMELII--ISENGFAPPI 121

Query: 122 EALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQK--EKTLDEFVQDQWLCCTPDGKIG 179
             LN                   L    ++  M +K  E+ L  FVQD+WL    +G+  
Sbjct: 122 SILN-------------------LADELQSKKMKKKEVEQLLQSFVQDKWL-IGRNGEYT 161

Query: 180 LGVRSCLDLRGWFRNL--DVP-FCEVCNEAVVKGEI-----------------------L 213
           L  R  ++L  +  N   DV   C VC++  ++ ++                       L
Sbjct: 162 LHTRCIMELEHYILNTYQDVAKICNVCHKIAIQCQLCENCGIPLHLQCAGIYFRGIANPL 221

Query: 214 CPRCGLRWPNQVPKAEILDEEEVPNATIQSQPAQGPKRKRTKTNETHAKDA 264
           CP C   WP+++P    +  +   ++  Q+ P +G + +R++   T A+ +
Sbjct: 222 CPNCKESWPHEIPDLSQVSSQGPSHS--QAAPVRG-RNQRSRNISTVARTS 269

Component of the SMC5-SMC6 complex, a complex involved in repair of DNA double-strand breaks by homologous recombination. The complex may promote sister chromatid homologous recombination by recruiting the SMC1-SMC3 cohesin complex to double-strand breaks. The complex is required for telomere maintenance via recombination and mediates sumoylation of shelterin complex (telosome) components. Has in vitro ubiquitin ligase activity in presence of ndnl2. Is involved in positive regulation of response to DNA damage stimulus.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
359479187	319	PREDICTED: uncharacterized protein LOC10	0.982	0.902	0.580	3e-93
296083970	343	unnamed protein product [Vitis vinifera]	0.982	0.839	0.580	8e-93
255561284	318	conserved hypothetical protein [Ricinus	0.982	0.905	0.534	1e-83
224132242	309	predicted protein [Populus trichocarpa]	0.979	0.928	0.542	9e-83
30688163	312	embryo defective 1379 protein [Arabidops	0.941	0.884	0.531	2e-81
226529901	337	hypothetical protein [Zea mays] gi|19470	0.955	0.830	0.489	8e-77
449515430	311	PREDICTED: non-structural maintenance of	0.965	0.909	0.493	4e-75
242084564	335	hypothetical protein SORBIDRAFT_08g00162	0.952	0.832	0.464	1e-73
194705616	339	unknown [Zea mays] gi|413915930|gb|AFW55	0.952	0.823	0.474	2e-72
218186362	336	hypothetical protein OsI_37334 [Oryza sa	0.740	0.645	0.584	1e-70

>gi|359479187|ref|XP_002270352.2| PREDICTED: uncharacterized protein LOC100259925 [Vitis vinifera]

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 184/317 (58%), Positives = 222/317 (70%), Gaps = 29/317 (9%)

Query: 1   MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ 60
           MP L+W+HHAL+QAL++RGPL E DFHAIFSG+TGK+PGAHQ  FN+YLL INKELS   
Sbjct: 1   MPDLSWRHHALIQALLSRGPLIEDDFHAIFSGVTGKNPGAHQQQFNDYLLKINKELSYVH 60

Query: 61  FELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISN 120
            ELR CR+QY G+V YGVVNNV+DEQSKLGTKYTV Q+AF+KGI+EAI QDV AQGSIS+
Sbjct: 61  LELRGCRNQYDGKVYYGVVNNVSDEQSKLGTKYTVPQLAFYKGIIEAIVQDVTAQGSISD 120

Query: 121 IEALNIRLENLVLS-TQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIG 179
           I+ALNIRLEN VL+ T  SQ +   +PAAF+NF++SQKEKTLDE VQDQWL  TPDGKI 
Sbjct: 121 IDALNIRLENQVLTGTSHSQGIPPNVPAAFKNFSISQKEKTLDELVQDQWLSSTPDGKIR 180

Query: 180 LGVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEI--------------------------L 213
           LGVRS LDLR WF N DVP C+VCNEA VK E+                          +
Sbjct: 181 LGVRSFLDLRSWFHNNDVPSCDVCNEAGVKAELCRNEGCMVRIHLYCLKKKFSQRRVERV 240

Query: 214 CPRCGLRWPNQVPKAEILDEEEVPNATIQSQPAQ-GPKRKRTKTNETHAKDAVGCGSSQS 272
           CP CG +W N      I +E+E    + +  P      RKR ++ +T   +  G  SSQ+
Sbjct: 241 CPGCGTQWQNASITDAIEEEDEPSRPSQRQPPPPAAATRKRLRSCKTEDGENGGPSSSQT 300

Query: 273 SVP-NSDFRRITRRSSR 288
           SVP ++DFRRITR S+R
Sbjct: 301 SVPVSTDFRRITRNSAR 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083970|emb|CBI24358.3| unnamed protein product [Vitis vinifera]

 Score =  346 bits (887), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 184/317 (58%), Positives = 222/317 (70%), Gaps = 29/317 (9%)

Query: 1   MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ 60
           MP L+W+HHAL+QAL++RGPL E DFHAIFSG+TGK+PGAHQ  FN+YLL INKELS   
Sbjct: 1   MPDLSWRHHALIQALLSRGPLIEDDFHAIFSGVTGKNPGAHQQQFNDYLLKINKELSYVH 60

Query: 61  FELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISN 120
            ELR CR+QY G+V YGVVNNV+DEQSKLGTKYTV Q+AF+KGI+EAI QDV AQGSIS+
Sbjct: 61  LELRGCRNQYDGKVYYGVVNNVSDEQSKLGTKYTVPQLAFYKGIIEAIVQDVTAQGSISD 120

Query: 121 IEALNIRLENLVLS-TQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIG 179
           I+ALNIRLEN VL+ T  SQ +   +PAAF+NF++SQKEKTLDE VQDQWL  TPDGKI 
Sbjct: 121 IDALNIRLENQVLTGTSHSQGIPPNVPAAFKNFSISQKEKTLDELVQDQWLSSTPDGKIR 180

Query: 180 LGVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEI--------------------------L 213
           LGVRS LDLR WF N DVP C+VCNEA VK E+                          +
Sbjct: 181 LGVRSFLDLRSWFHNNDVPSCDVCNEAGVKAELCRNEGCMVRIHLYCLKKKFSQRRVERV 240

Query: 214 CPRCGLRWPNQVPKAEILDEEEVPNATIQSQPAQ-GPKRKRTKTNETHAKDAVGCGSSQS 272
           CP CG +W N      I +E+E    + +  P      RKR ++ +T   +  G  SSQ+
Sbjct: 241 CPGCGTQWQNASITDAIEEEDEPSRPSQRQPPPPAAATRKRLRSCKTEDGENGGPSSSQT 300

Query: 273 SVP-NSDFRRITRRSSR 288
           SVP ++DFRRITR S+R
Sbjct: 301 SVPVSTDFRRITRNSAR 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561284|ref|XP_002521653.1| conserved hypothetical protein [Ricinus communis] gi|223539165|gb|EEF40760.1| conserved hypothetical protein [Ricinus communis]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 169/316 (53%), Positives = 203/316 (64%), Gaps = 28/316 (8%)

Query: 1   MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ 60
           M  LNWKHH L+Q+LM+RGPLKE DFH IFS +TGK+P      FN++LL INKELS  Q
Sbjct: 1   MAVLNWKHHTLIQSLMSRGPLKEDDFHKIFSSVTGKNPRTCGREFNDFLLKINKELSYVQ 60

Query: 61  FELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISN 120
            ELR CR+Q  GQ+ YG+VNNV+D+QSKLG+KY+V QI  FK  +EAI QD  AQGSIS 
Sbjct: 61  MELRRCRNQNDGQLFYGLVNNVSDDQSKLGSKYSVPQITLFKAAIEAIVQDATAQGSISW 120

Query: 121 IEALNIRLENLVLST--QGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKI 178
             ALNIRLEN V ++    SQ  +  +P A RNF++SQKEKTLDE V D+WLC TPDG I
Sbjct: 121 SGALNIRLENQVYNSAESQSQGSSSQVPPALRNFSLSQKEKTLDELVCDKWLCRTPDGGI 180

Query: 179 GLGVRSCLDLRGWFRNLDVPFCEVCNEAVVK--------------------------GEI 212
           GLGVRS LDLR WF N   P C+VCNEA +K                          G+I
Sbjct: 181 GLGVRSYLDLRSWFHNSGTPPCQVCNEAAIKAKVCQNESCTLRIHHYCLKKKISQSRGKI 240

Query: 213 LCPRCGLRWPNQVPKAEILDEEEVPNATIQSQPAQGPKRKRTKTNETHAKDAVGCGSSQS 272
           +CP CG+ W  QVPK E +D E   N   +SQP  G KRK+ K N     DA    SSQ+
Sbjct: 241 VCPTCGIEWECQVPKCEAVDVEYEQNDPTESQPPVGSKRKKLKANINAEADAARGSSSQA 300

Query: 273 SVPNSDFRRITRRSSR 288
           S P  D RR+TR S++
Sbjct: 301 SQPIPDLRRVTRSSAQ 316

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132242|ref|XP_002328220.1| predicted protein [Populus trichocarpa] gi|222837735|gb|EEE76100.1| predicted protein [Populus trichocarpa]

 Score =  312 bits (800), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 167/308 (54%), Positives = 201/308 (65%), Gaps = 21/308 (6%)

Query: 1   MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ 60
           M  LNWKHH L+QALM+RGPL E +   IF+ +TGK+P  ++   N+YLL INKELS  Q
Sbjct: 1   MSVLNWKHHTLIQALMSRGPLTEDELFNIFADVTGKNPRGNKRELNDYLLKINKELSYVQ 60

Query: 61  FELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISN 120
            E+R CR+Q  G VCYG+VN V DEQSKLGTKY+V QIA FKG++EAI QDV AQGSISN
Sbjct: 61  MEMRCCRNQNDGGVCYGLVNTVPDEQSKLGTKYSVPQIALFKGVIEAIVQDVTAQGSISN 120

Query: 121 IEALNIRLENLVLSTQGSQLLNGP--LPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKI 178
           I+ALNIRLEN V +  GS+   GP  +P A RNF+MSQKEKTLDE V+D WLC TPDG I
Sbjct: 121 IDALNIRLENQVQNGTGSEYQEGPSQIPPALRNFSMSQKEKTLDELVRDNWLCHTPDGAI 180

Query: 179 GLGVRSCLDLRGWFRNLDVPFCE--VC-NEAVV---------------KGEILCPRCGLR 220
           GLG RS LDLR WF +  +P CE  VC NE                  +G+I+CP CG++
Sbjct: 181 GLGARSYLDLRSWFNSSGIPSCEGKVCQNEGCTARIHHHCLEKKISHSRGDIVCPSCGIQ 240

Query: 221 WPNQVPKAEILDEEEVPNATIQSQPAQGPKRKRTKTNETHAKDAVGCGSSQSSVPNSDFR 280
           W   V K E+++EE   N  IQSQ   G KRKR + +      A GC  S         R
Sbjct: 241 WHRGVAKTEVIEEEGDLNGHIQSQLPAGSKRKRLRADTNIPAAAFGC-VSSQGSQAGSSR 299

Query: 281 RITRRSSR 288
           RITR S+R
Sbjct: 300 RITRASAR 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688163|ref|NP_680177.2| embryo defective 1379 protein [Arabidopsis thaliana] gi|29294064|gb|AAO73901.1| hypothetical protein [Arabidopsis thaliana] gi|45752662|gb|AAS76229.1| At5g21140 [Arabidopsis thaliana] gi|46402448|gb|AAS92326.1| At5g21140 [Arabidopsis thaliana] gi|332005556|gb|AED92939.1| embryo defective 1379 protein [Arabidopsis thaliana]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 167/314 (53%), Positives = 212/314 (67%), Gaps = 38/314 (12%)

Query: 1   MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ 60
           M SL+WKHH L+QAL++RGPLKEK+FH+IF+ +TG++P   + +F++YLL INKELS   
Sbjct: 1   MASLSWKHHTLIQALISRGPLKEKEFHSIFTAVTGRNPVTVKKIFDKYLLEINKELSYVH 60

Query: 61  FELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISN 120
           FEL+ACRDQY GQVCYGVVNNVAD+QSKLGTKY+V QIAFFKGI+EAIAQD  AQG IS+
Sbjct: 61  FELKACRDQYDGQVCYGVVNNVADDQSKLGTKYSVPQIAFFKGIIEAIAQDEAAQGCISS 120

Query: 121 IEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGL 180
            +ALNIRLEN + S   S      +P AF+NF+M+QKEKTLDE V+D+WLC T +  IGL
Sbjct: 121 FDALNIRLENQISSEASSSQQQ--VPPAFKNFSMTQKEKTLDELVRDKWLCRTRERNIGL 178

Query: 181 GVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEILCPR------------------------ 216
           G+RS LDLR WFRN DVP CEVCNEA VK + LCP                         
Sbjct: 179 GIRSLLDLRSWFRNNDVPSCEVCNEAGVKAD-LCPTEGCPVRIHKYCLKKLLSQRDDKRC 237

Query: 217 --CGLRWP-NQVPKAEILDEEEVPNATIQSQPAQGPKRKRTKTNETHAKDAVGCGSSQSS 273
             CG  WP +++ K E  +E        ++Q A  PK KR +      +D+   GSSQ+S
Sbjct: 238 SGCGKPWPLSKITKTEAAEEAMNDEEESETQ-ATAPKAKRRR----QQRDSTENGSSQAS 292

Query: 274 VPNS---DFRRITR 284
           + ++   + RR+TR
Sbjct: 293 LASTSGANTRRVTR 306

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226529901|ref|NP_001142328.1| hypothetical protein [Zea mays] gi|194708236|gb|ACF88202.1| unknown [Zea mays] gi|238013158|gb|ACR37614.1| unknown [Zea mays] gi|413915931|gb|AFW55863.1| hypothetical protein ZEAMMB73_568396 [Zea mays]

 Score =  293 bits (749), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 156/319 (48%), Positives = 196/319 (61%), Gaps = 39/319 (12%)

Query: 1   MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ 60
           M  L+W+HH L+Q+L+ RGPL E+DFHAIF+G++GK+P  HQ LFN+ LL INK+L+  Q
Sbjct: 1   MAPLSWRHHTLLQSLLHRGPLSERDFHAIFAGVSGKNPATHQQLFNDTLLKINKDLAYLQ 60

Query: 61  FELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISN 120
           FELRAC +QY G V YGVVNN+ADE+SKLGTKY+V QIAF+KG+LEAI Q+    GSI++
Sbjct: 61  FELRACINQYDGMVYYGVVNNIADEESKLGTKYSVPQIAFYKGLLEAIVQEAGNDGSITS 120

Query: 121 IEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGL 180
           I+ALN+RL+N V    GSQ     LP++ +NF+MSQKEKTLDE ++D+WL  T  GKIGL
Sbjct: 121 IDALNVRLDNQVAVLDGSQDSQSRLPSSIKNFSMSQKEKTLDELIRDRWLSYTATGKIGL 180

Query: 181 GVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEI--------------------------LC 214
           G RS LDLR WFR  D+P C VCNEA +K                              C
Sbjct: 181 GTRSFLDLRSWFRGNDIPSCVVCNEACIKASSCPNEGCDVRIHEYCLKKKFSQRKASRAC 240

Query: 215 PRCGLRWPNQVPKAEILDEEEVPNATIQSQPAQGP---KRKRTKTNETHAKDAVGCGSSQ 271
           P CG  WP Q  + E  DE   P     + PA  P   KR R K       D  G     
Sbjct: 241 PSCGTGWPCQDGEGEA-DEVNEPGEEDLASPANHPSRKKRSRVKAELVEENDIAG----- 294

Query: 272 SSVPNSDFRRITRRSSRPA 290
              P+++  R TRR+ R A
Sbjct: 295 ---PSTEVPR-TRRTLRSA 309

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515430|ref|XP_004164752.1| PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Cucumis sativus]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 157/318 (49%), Positives = 204/318 (64%), Gaps = 35/318 (11%)

Query: 1   MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ 60
           MP L+W+HH L+Q+L++RGPL+E  FH +F  +TGK+P   Q +FN YLL INK LS  Q
Sbjct: 1   MPELSWRHHTLIQSLLSRGPLREDQFHLLFKQITGKTPDNDQQVFNSYLLTINKALSFAQ 60

Query: 61  FELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISN 120
           FELR CR+QY G+V YG+VNNV+D+QSKLGTKY+V QIA FK I+EAIAQD  AQG ISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDDQSKLGTKYSVPQIALFKAIVEAIAQDSSAQGGISN 120

Query: 121 IEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGL 180
           I ALN++LEN +  T GSQ  +  +PAAF+NF+ S KEKT+ E  QD+WL CTPDG + L
Sbjct: 121 ISALNLQLENQLGDT-GSQ--SQVIPAAFKNFSKSHKEKTIAELAQDKWLDCTPDGFVNL 177

Query: 181 GVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEI--------------------------LC 214
           GVRS LDLR WFR+ DVP CEVCNEA VK E+                           C
Sbjct: 178 GVRSFLDLRSWFRSNDVPSCEVCNEAGVKAELCSTEVCTVRVHQYCLKKMLSNKKSKKAC 237

Query: 215 PRCGLRWPNQVPKAEILDEEEVPNATIQSQPAQGPKRKRTKTNETHAKDAVGCGSSQSSV 274
           P CG RW +     E  +EE+ P+   Q QP+   KRK+++ N       +  G ++ S 
Sbjct: 238 PGCGTRWQSTTSNIEPKEEEDEPDTRTQDQPS-SHKRKKSRLNVD-----IDLGPNEDST 291

Query: 275 PNSDFRRITRRSSRPASQ 292
             +     TRR++R +++
Sbjct: 292 AEASQPPPTRRTTRSSAR 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242084564|ref|XP_002442707.1| hypothetical protein SORBIDRAFT_08g001620 [Sorghum bicolor] gi|241943400|gb|EES16545.1| hypothetical protein SORBIDRAFT_08g001620 [Sorghum bicolor]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/310 (46%), Positives = 190/310 (61%), Gaps = 31/310 (10%)

Query: 1   MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ 60
           M  L+W+HH L+QAL+ RGPL E+DFHA+F+G++GK P  HQ LFN+ LL INK+L+  Q
Sbjct: 1   MAPLSWRHHTLLQALLHRGPLSERDFHAVFAGVSGKDPATHQQLFNDTLLKINKDLAYLQ 60

Query: 61  FELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISN 120
           FELRAC +QY G V YGVVNN+ DE+SKLGTKY+V QIAF+KG+LEAI Q+    GSI++
Sbjct: 61  FELRACINQYDGMVYYGVVNNIVDEESKLGTKYSVPQIAFYKGLLEAIVQEAGTDGSITS 120

Query: 121 IEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGL 180
           I+ALN+RLEN ++   GS+     +P++ +NF++SQKE TLDE ++D+WL  T  GKIGL
Sbjct: 121 IDALNVRLENQIVIVDGSEDSQSRVPSSIKNFSLSQKENTLDELIRDRWLSYTSTGKIGL 180

Query: 181 GVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEI--------------------------LC 214
           G RS LDLR WFR  D+P C VCNEA +K                              C
Sbjct: 181 GTRSFLDLRSWFRGNDIPSCVVCNEACIKASSCLNEGCNVRIHEYCLKKKFSQRKASRAC 240

Query: 215 PRCGLRWPNQVPKAEILDEEEVPNATIQSQPAQGPKRKRTKTNETHAKDAVGCGSSQSSV 274
             CG  WP Q  +A+  D+   P     S   +  ++KR +      ++    G S   V
Sbjct: 241 SSCGTEWPCQDGEADGDDDVNEPGEDQVSSANRSSRKKRKRVKAELVEENNNAGPSM-EV 299

Query: 275 PNSDFRRITR 284
           P    RRI R
Sbjct: 300 P----RRILR 305

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194705616|gb|ACF86892.1| unknown [Zea mays] gi|413915930|gb|AFW55862.1| hypothetical protein ZEAMMB73_568396 [Zea mays]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/318 (47%), Positives = 190/318 (59%), Gaps = 39/318 (12%)

Query: 2   PSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQF 61
           PS   +HH L+QAL++RGPL E DF A+F+ ++ + P  HQ LFN+ LL INK+L+  QF
Sbjct: 4   PSWRQRHHTLLQALLSRGPLAEPDFRALFTAVSDRDPATHQQLFNDTLLKINKDLAYLQF 63

Query: 62  ELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNI 121
           ELRAC +QY G V YGVVNN+ADE+SKLGTKY+V QIAF+KG+LEAI Q+    GSI++I
Sbjct: 64  ELRACINQYDGMVYYGVVNNIADEESKLGTKYSVPQIAFYKGLLEAIVQEAGNDGSITSI 123

Query: 122 EALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLG 181
           +ALN+RL+N V    GSQ     LP++ +NF+MSQKEKTLDE ++D+WL  T  GKIGLG
Sbjct: 124 DALNVRLDNQVAVLDGSQDSQSRLPSSIKNFSMSQKEKTLDELIRDRWLSYTATGKIGLG 183

Query: 182 VRSCLDLRGWFRNLDVPFCEVCNEAVVKGEI--------------------------LCP 215
            RS LDLR WFR  D+P C VCNEA +K                              CP
Sbjct: 184 TRSFLDLRSWFRGNDIPSCVVCNEACIKASSCPNEGCDVRIHEYCLKKKFSQRKASRACP 243

Query: 216 RCGLRWPNQVPKAEILDEEEVPNATIQSQPAQGP---KRKRTKTNETHAKDAVGCGSSQS 272
            CG  WP Q  + E  DE   P     + PA  P   KR R K       D  G      
Sbjct: 244 SCGTGWPCQDGEGEA-DEVNEPGEEDLASPANHPSRKKRSRVKAELVEENDIAG------ 296

Query: 273 SVPNSDFRRITRRSSRPA 290
             P+++  R TRR+ R A
Sbjct: 297 --PSTEVPR-TRRTLRSA 311

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218186362|gb|EEC68789.1| hypothetical protein OsI_37334 [Oryza sativa Indica Group] gi|222616560|gb|EEE52692.1| hypothetical protein OsJ_35085 [Oryza sativa Japonica Group]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/219 (58%), Positives = 164/219 (74%), Gaps = 2/219 (0%)

Query: 1   MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTG-KSPGAHQGLFNEYLLNINKELSSC 59
           M  L+W+HH L+QAL++RGPL E+DFHA+FS ++G K+P  H+ LFN+ LL INKEL+  
Sbjct: 1   MAPLSWRHHTLLQALLSRGPLSERDFHALFSAISGGKNPATHRHLFNDTLLKINKELAYL 60

Query: 60  QFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSIS 119
           QFELRA  +QY G V YGVVNN+ADE+SKLG+K++V QIAF+KG+LEAI  +    GSI+
Sbjct: 61  QFELRAGINQYDGTVYYGVVNNIADEESKLGSKFSVPQIAFYKGLLEAIVHEAGNDGSIT 120

Query: 120 NIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIG 179
           NI+ALN R+EN V+    SQ     LP +  NF++SQKEKTL+E +QD+WL  TP GKIG
Sbjct: 121 NIDALNTRIENQVVIADASQGSQSRLPTSITNFSLSQKEKTLNELIQDRWLSYTPTGKIG 180

Query: 180 LGVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEILCPRCG 218
           LG+RS LDLR W R+ D+P CEVCNEA +K    CP  G
Sbjct: 181 LGIRSFLDLRSWLRSNDIPSCEVCNEACIKASS-CPNEG 218

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2179003	312	emb1379 "AT5G21140" [Arabidops	0.972	0.913	0.551	3.9e-76
UNIPROTKB|Q5RAZ5	266	NSMCE1 "Non-structural mainten	0.754	0.830	0.25	4.3e-05
UNIPROTKB|Q8WV22	266	NSMCE1 "Non-structural mainten	0.781	0.860	0.244	9.8e-05
UNIPROTKB|E2RFI7	283	NSMCE1 "Uncharacterized protei	0.767	0.795	0.243	0.00015
RGD|1307760	266	Nsmce1 "non-SMC element 1 homo	0.791	0.872	0.227	0.00016
UNIPROTKB|Q499U6	266	Nsmce1 "Non-structural mainten	0.791	0.872	0.227	0.00016
UNIPROTKB|Q6P881	270	nsmce1 "Non-structural mainten	0.839	0.911	0.213	0.00017
UNIPROTKB|Q3T0X7	266	NSMCE1 "Non-structural mainten	0.795	0.875	0.250	0.00037
MGI|MGI:1914961	266	Nsmce1 "non-SMC element 1 homo	0.791	0.872	0.227	0.00048
UNIPROTKB|G4MZL2	326	MGG_01429 "Uncharacterized pro	0.645	0.579	0.229	0.00083

TAIR|locus:2179003 emb1379 "AT5G21140" [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 162/294 (55%), Positives = 205/294 (69%)

Query:     1 MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ 60
             M SL+WKHH L+QAL++RGPLKEK+FH+IF+ +TG++P   + +F++YLL INKELS   
Sbjct:     1 MASLSWKHHTLIQALISRGPLKEKEFHSIFTAVTGRNPVTVKKIFDKYLLEINKELSYVH 60

Query:    61 FELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISN 120
             FEL+ACRDQY GQVCYGVVNNVAD+QSKLGTKY+V QIAFFKGI+EAIAQD  AQG IS+
Sbjct:    61 FELKACRDQYDGQVCYGVVNNVADDQSKLGTKYSVPQIAFFKGIIEAIAQDEAAQGCISS 120

Query:   121 IEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGL 180
              +ALNIRLEN + S   S      +P AF+NF+M+QKEKTLDE V+D+WLC T +  IGL
Sbjct:   121 FDALNIRLENQISSEASSS--QQQVPPAFKNFSMTQKEKTLDELVRDKWLCRTRERNIGL 178

Query:   181 GVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEILCPR--CGLRWPNQVPKAEILDEEEVPN 238
             G+RS LDLR WFRN DVP CEVCNEA VK + LCP   C +R      K ++L + +   
Sbjct:   179 GIRSLLDLRSWFRNNDVPSCEVCNEAGVKAD-LCPTEGCPVRIHKYCLK-KLLSQRDDKR 236

Query:   239 ATIQSQPAQGPKRKRTKTNETH-AKDAVGCGSSQSSVPNSDFRRITRRSSRPAS 291
              +   +P   P  K TKT     A +      +Q++ P +  RR  R S+   S
Sbjct:   237 CSGCGKP--WPLSKITKTEAAEEAMNDEEESETQATAPKAKRRRQQRDSTENGS 288

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

UNIPROTKB|Q5RAZ5 NSMCE1 "Non-structural maintenance of chromosomes element 1 homolog" [Pongo abelii (taxid:9601)]

 Score = 121 (47.7 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 60/240 (25%), Positives = 97/240 (40%)

Query:     8 HHALVQALMTRGPLKEKDFHAIFSGLTG-KSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
             H   +Q LMT G L+E D   +           A      +++ NIN  L S   E++  
Sbjct:    15 HRRFLQLLMTHGVLEEWDVKRLQRHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKRG 74

Query:    67 RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
               +  G+  Y +VN      SK+ T +   ++  F+  LE I       GS +NI  L  
Sbjct:    75 VTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSETGFGSSTNILNLVD 134

Query:   127 RLENLVL-STQGSQLL-----NGPLPAAFRNFTMS-----QKEKTLDEFVQDQWLCCTPD 175
             +L+   +   +  Q+L     N  L      FT+      + E+ + E   D    C   
Sbjct:   135 QLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICNIC 194

Query:   176 GKIGLGVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEILCPRCGLRWPNQVPKAEILDEEE 235
               + +  +SC +  G  R + +P C V        E  CP C   WP+++PK  + D E+
Sbjct:   195 HSLLIQGQSC-ETCG-IR-MHLP-C-VAKYFQSNAEPRCPHCNDYWPHEIPK--VFDPEK 247

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0030915 "Smc5-Smc6 complex" evidence=ISS

GO:2001022 "positive regulation of response to DNA damage stimulus" evidence=ISS

UNIPROTKB|Q8WV22 NSMCE1 "Non-structural maintenance of chromosomes element 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 9.8e-05, P = 9.8e-05
 Identities = 61/249 (24%), Positives = 102/249 (40%)

Query:     8 HHALVQALMTRGPLKEKDFHAIFSGLTG-KSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
             H   +Q LMT G L+E D   + +         A      +++ NIN  L S   E++  
Sbjct:    15 HRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKRG 74

Query:    67 RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
               +  G+  Y +VN      SK+ T +   ++  F+  LE I        S +NI  L  
Sbjct:    75 VTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSETGFASSTNILNLVD 134

Query:   127 RLENLVL-STQGSQLL-----NGPLPAAFRNFTMS-----QKEKTLDEFVQDQWLCCTPD 175
             +L+   +   +  Q+L     N  L      FT+      + E+ + E   D    C   
Sbjct:   135 QLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICNIC 194

Query:   176 GKIGLGVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEILCPRCGLRWPNQVPKAEILD-EE 234
               + +  +SC +  G  R + +P C V        E  CP C   WP+++PK  + D E+
Sbjct:   195 HSLLIQGQSC-ETCG-IR-MHLP-C-VAKYFQSNAEPRCPHCNDYWPHEIPK--VFDPEK 247

Query:   235 EVPNATIQS 243
             E  +  ++S
Sbjct:   248 ERESGVLKS 256

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0000781 "chromosome, telomeric region" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:2001022 "positive regulation of response to DNA damage stimulus" evidence=IMP

GO:0030915 "Smc5-Smc6 complex" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=IDA

UNIPROTKB|E2RFI7 NSMCE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 117 (46.2 bits), Expect = 0.00015, P = 0.00015
 Identities = 60/246 (24%), Positives = 100/246 (40%)

Query:     8 HHALVQALMTRGPLKEKDFHAIFSGL--TGKSPGAHQGLFNEYLLNINKELSSCQFELRA 65
             H   +Q LMT G L+E D   +            A + L  +++ NIN  L S   E++ 
Sbjct:    32 HRRFLQLLMTHGVLEEWDVRRLQKHCYRVHDRTAAVEEL-EDFINNINSVLESLYIEIKK 90

Query:    66 CRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALN 125
                +  G+  Y +VN      SK+ + +   ++  F+  LE I        S +NI  L 
Sbjct:    91 GATEDDGRPVYALVNLATTSVSKMASDFAENELDLFRKALELIIDSETGFASSTNILNLV 150

Query:   126 IRLENLVL-STQGSQLL-----NGPLPAAFRNFTMSQK-----EKTLDEFVQDQWLCCTP 174
              +L+   +   +  Q+L     N  L      FT+  +     E+ + E   D    C  
Sbjct:   151 DQLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHSRAILEMEQYIRETYPDAVKICNI 210

Query:   175 DGKIGLGVRSCLDLRGWFRNLDVPFCEVCNEAVVKGEILCPRCGLRWPNQVPKAEILDEE 234
                + +  +SC +  G  R + +P C V        E  CP C   WP+++P  E+ D E
Sbjct:   211 CHSLLIQGQSC-ETCG-IR-MHLP-C-VAKYFQSNSEPRCPHCNDYWPHEIP--EVFDPE 263

Query:   235 EVPNAT 240
             +   A+
Sbjct:   264 KEREAS 269

GO:2001022 "positive regulation of response to DNA damage stimulus" evidence=IEA

GO:0030915 "Smc5-Smc6 complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

RGD|1307760 Nsmce1 "non-SMC element 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 0.00016, P = 0.00016
 Identities = 60/264 (22%), Positives = 106/264 (40%)

Query:     8 HHALVQALMTRGPLKEKDFHAIFSGLTG-KSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
             H   +Q LMT G L+E +   + +         A      +++ NIN  L S   E++  
Sbjct:    15 HRRFLQLLMTHGVLEEWEVRRLQNHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKKG 74

Query:    67 RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
               +  G+  Y +VN      SK+ T +   ++  F+  LE I        S +NI  L  
Sbjct:    75 ITEDDGRPIYALVNLATTSVSKMATDFAENELDLFRKALELIVDSETGFASSTNILNLVD 134

Query:   127 RLENLVL-STQGSQLLNGPLPAAFR-----NFTMSQKE-KTLDEFVQDQWLCCTPDGKIG 179
             +L+   +   +  Q+L   + + +       FT+  +    +++F+++ +    PD    
Sbjct:   135 QLKGKKMRKKEAEQVLQKFVQSKWLIEKEGEFTLHGRAILEMEQFIRESY----PDAVKM 190

Query:   180 LGVRSCLDLRGWFRNLDVPFCEVCN-----EAVVK-----GEILCPRCGLRWPNQVPKAE 229
               +   L ++G         CE C        V K      E  CP C   WP+ +P  E
Sbjct:   191 CNICHSLLIQG-------QSCETCGIRMHLPCVAKYFQSTAEPRCPHCNDYWPHDIP--E 241

Query:   230 ILDEEEVPNATIQSQPAQGPKRKR 253
             + D E+   A I S+ ++   R R
Sbjct:   242 VFDPEKEREAGI-SKSSRKSLRTR 264

GO:0000781 "chromosome, telomeric region" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0030915 "Smc5-Smc6 complex" evidence=IEA;ISO;ISS

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:2001022 "positive regulation of response to DNA damage stimulus" evidence=ISO;ISS

UNIPROTKB|Q499U6 Nsmce1 "Non-structural maintenance of chromosomes element 1 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 0.00016, P = 0.00016
 Identities = 60/264 (22%), Positives = 106/264 (40%)

Query:     8 HHALVQALMTRGPLKEKDFHAIFSGLTG-KSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
             H   +Q LMT G L+E +   + +         A      +++ NIN  L S   E++  
Sbjct:    15 HRRFLQLLMTHGVLEEWEVRRLQNHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKKG 74

Query:    67 RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
               +  G+  Y +VN      SK+ T +   ++  F+  LE I        S +NI  L  
Sbjct:    75 ITEDDGRPIYALVNLATTSVSKMATDFAENELDLFRKALELIVDSETGFASSTNILNLVD 134

Query:   127 RLENLVL-STQGSQLLNGPLPAAFR-----NFTMSQKE-KTLDEFVQDQWLCCTPDGKIG 179
             +L+   +   +  Q+L   + + +       FT+  +    +++F+++ +    PD    
Sbjct:   135 QLKGKKMRKKEAEQVLQKFVQSKWLIEKEGEFTLHGRAILEMEQFIRESY----PDAVKM 190

Query:   180 LGVRSCLDLRGWFRNLDVPFCEVCN-----EAVVK-----GEILCPRCGLRWPNQVPKAE 229
               +   L ++G         CE C        V K      E  CP C   WP+ +P  E
Sbjct:   191 CNICHSLLIQG-------QSCETCGIRMHLPCVAKYFQSTAEPRCPHCNDYWPHDIP--E 241

Query:   230 ILDEEEVPNATIQSQPAQGPKRKR 253
             + D E+   A I S+ ++   R R
Sbjct:   242 VFDPEKEREAGI-SKSSRKSLRTR 264

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|Q6P881 nsmce1 "Non-structural maintenance of chromosomes element 1 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 116 (45.9 bits), Expect = 0.00017, P = 0.00017
 Identities = 59/276 (21%), Positives = 115/276 (41%)

Query:     4 LNWKHHALVQALMTRGPLKEKDFHAIFSGL--TGKSPGAHQGLFNEYLLNINKELSSCQF 61
             +N  H   +Q LM+ G ++     A+        K    H  L ++++  +NK L     
Sbjct:     5 INESHQRFLQVLMSHGIMESSLVRALHRHCCEVHKVNYMHDNL-DDFVGVLNKHLQPLFM 63

Query:    62 ELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNI 121
             ++     +  G   Y +VN V ++ +K+ + Y   ++  F+  +E I   +   G    I
Sbjct:    64 KIEKGVGEEDGLTYYALVNRVENDITKMASDYAENELELFRKTMELII--ISENGFAPPI 121

Query:   122 EALNI--RLENLVLSTQG-SQLLNGPLPAAF---RN--FTMSQK-EKTLDEFV----QDQ 168
               LN+   L++  +  +   QLL   +   +   RN  +T+  +    L+ ++    QD 
Sbjct:   122 SILNLADELQSKKMKKKEVEQLLQSFVQDKWLIGRNGEYTLHTRCIMELEHYILNTYQDV 181

Query:   169 WLCCTPDGKIGLGVRSCLDLRGWFRNLDVPFCEVCNEAVVKG--EILCPRCGLRWPNQVP 226
                C    KI +  + C        N  +P    C     +G    LCP C   WP+++P
Sbjct:   182 AKICNVCHKIAIQCQLC-------ENCGIPLHLQCAGIYFRGIANPLCPNCKESWPHEIP 234

Query:   227 KAEILDEEEVPNATIQSQPAQGPKRKRTKTNETHAK 262
                 +  +  P+ + Q+ P +G + +R++   T A+
Sbjct:   235 DLSQVSSQG-PSHS-QAAPVRG-RNQRSRNISTVAR 267

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0030915 "Smc5-Smc6 complex" evidence=ISS

GO:2001022 "positive regulation of response to DNA damage stimulus" evidence=ISS

UNIPROTKB|Q3T0X7 NSMCE1 "Non-structural maintenance of chromosomes element 1 homolog" [Bos taurus (taxid:9913)]

 Score = 113 (44.8 bits), Expect = 0.00037, P = 0.00037
 Identities = 66/263 (25%), Positives = 101/263 (38%)

Query:     8 HHALVQALMTRGPLKEKDFHAIFSGLTGKSP-GAHQGLFNEYLLNINKELSSCQFELRAC 66
             H   +Q LMT G L+E D   +           A      +++  IN  L S   E++  
Sbjct:    15 HRRFLQLLMTHGVLEECDVKRLQKHCYKVHDCNATVEKLEDFINTINSVLESLYIEIKKG 74

Query:    67 RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
               +  G+  Y +VN      SK+ + +   ++  F+  LE I        S +NI  LN+
Sbjct:    75 VTEDDGRPIYALVNLATTSVSKMASDFAENELDLFRKALELIIDSDTGFASSTNI--LNL 132

Query:   127 RLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEK--TLDE---FVQDQWLCCT-PDGKIGL 180
              ++ L       +     L    +N  + +KE   TL        DQ++  T PD     
Sbjct:   133 -VDQLKGKKMRKKEAEHVLQKFVQNKWLIEKEGEFTLHGRAILEMDQYIRETYPDA---- 187

Query:   181 GVRSCLDLRGWFRNLDVPFCEVCN-----EAVVK-----GEILCPRCGLRWPNQVPKAEI 230
              V+ C   R     +    CE C        V K      E  CP C   WP++VP  E+
Sbjct:   188 -VKVCNICRSLL--IQGQSCETCGIRMHLPCVAKYFQSSSEPHCPHCNDYWPHEVP--EV 242

Query:   231 LDEEEVPNATIQSQPAQGPKRKR 253
              D E+    T  S+  + P R R
Sbjct:   243 FDPEK-ERETGMSRSNKRPSRSR 264

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0030915 "Smc5-Smc6 complex" evidence=ISS

GO:2001022 "positive regulation of response to DNA damage stimulus" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0000781 "chromosome, telomeric region" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

MGI|MGI:1914961 Nsmce1 "non-SMC element 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 112 (44.5 bits), Expect = 0.00048, P = 0.00048
 Identities = 60/264 (22%), Positives = 106/264 (40%)

Query:     8 HHALVQALMTRGPLKEKDFHAIFSGLTG-KSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
             H   +Q LMT G L+E +   + +         A      +++ NIN  L S   E++  
Sbjct:    15 HRRFLQLLMTHGVLEEWEVRRLQNHCYQVHDRNATVDKLEDFINNINSVLESLYIEIKKG 74

Query:    67 RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
               +  G+  Y +VN      SK+ T +   ++  F+  LE I        S +NI  L  
Sbjct:    75 VTEDDGRPIYALVNLATTSVSKMATDFAENELDLFRKALELIVDSETGFASSTNILNLVD 134

Query:   127 RLENLVL-STQGSQLLNGPLPAAFR-----NFTMSQKE-KTLDEFVQDQWLCCTPDGKIG 179
             +L+   +   +  Q+L   + + +       FT+  +    +++F+++ +    PD    
Sbjct:   135 QLKGKKMRKKEAEQVLQKFVQSKWLIEKEGEFTLHGRAILEMEQFIRESY----PDS--- 187

Query:   180 LGVRSCLDLRGWFRNLDVPFCEVCN-----EAVVK-----GEILCPRCGLRWPNQVPKAE 229
               V+ C    G    +    CE C        V K      E  CP C   WP+ +P  E
Sbjct:   188 --VKMCNICHGLL--IQGQSCETCGIRMHLPCVAKYFQSIPEPHCPHCNDYWPHDIP--E 241

Query:   230 ILDEEEVPNATIQSQPAQGPKRKR 253
             + + E+   A I S+ ++   R R
Sbjct:   242 VYNPEKEREAGI-SKSSRKSLRTR 264

GO:0000781 "chromosome, telomeric region" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0030915 "Smc5-Smc6 complex" evidence=ISO

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:2001022 "positive regulation of response to DNA damage stimulus" evidence=ISO

UNIPROTKB|G4MZL2 MGG_01429 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 102 (41.0 bits), Expect = 0.00083, Sum P(2) = 0.00083
 Identities = 48/209 (22%), Positives = 93/209 (44%)

Query:     1 MPSLNWK--HHALVQALMTRGPLKEKDFHAIFSGLTG--KSPGAHQGLFNEY-------L 49
             +P+ +W   H   +QA+M RG +  ++   I S L    KS GA     +E        +
Sbjct:     7 LPA-DWTNLHRGFLQAMMARGSMTLEEAQPILSSLHNAEKSVGAAGINMDEIEIEDLEAV 65

Query:    50 LNINKE-LSSCQFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAI 108
             L++ +E +S   ++++  R Q   +  +  +N  +D  ++L T +T  +++F K +L+AI
Sbjct:    66 LSMIREAISPLDYDIKKHRHQTTKEEVWAFININSDLSTQLATTHTADEMSFIKRLLDAI 125

Query:   109 AQDVMAQGSISNIEALNIRLENLVLSTQGSQLL--NGPLPAAF----RNFTMSQKEKTLD 162
               D   +  I  +     +   L   T+  + L  NG   A+     +    S+ +  + 
Sbjct:   126 F-DTYNKPRIELMCITADQARKLSRPTRNRESLGVNGDSGASQSATDKGLKHSEVDALMA 184

Query:   163 EFVQDQWLCCTPDGKIGLGVRSCLDLRGW 191
                ++ WL  +  G   L  R+ L+L  W
Sbjct:   185 SLTEEGWLEKSAAGFYSLAPRALLELWSW 213

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
pfam07574	180	pfam07574, SMC_Nse1, Nse1 non-SMC component of SMC	8e-52

>gnl|CDD|219471 pfam07574, SMC_Nse1, Nse1 non-SMC component of SMC5-6 complex

 Score =  167 bits (426), Expect = 8e-52
 Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 15/189 (7%)

Query: 6   WKHHALVQALMTRGPLKEKDFHAIFSGLTGK------SPGAHQGLFNEYLLNINKELSSC 59
             H AL+QAL++RG L E +   IF+ +              Q   +E++  INK LS  
Sbjct: 1   EVHRALLQALLSRGTLSENELDKIFAAICADHGVTLPDDKTWQDKLDEFVAEINKRLSPL 60

Query: 60  QFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSIS 119
            ++++  R Q  G+  Y  VN VAD  SK+ T ++ +++ FFK +++ IA          
Sbjct: 61  GYKIKKVRYQPDGERYYVYVNTVADPISKMATTFSAEELEFFKKLIDLIADS-------E 113

Query: 120 NIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIG 179
           + EA  I   N       S         A +    S+ E+ L + VQD WL  T +GK G
Sbjct: 114 DAEAAIIAAVNETDDIASS--AMKKTLPATKELKKSEAEELLQKLVQDGWLYRTREGKYG 171

Query: 180 LGVRSCLDL 188
           LG RS ++L
Sbjct: 172 LGPRSLVEL 180

S. cerevisiae Nse1 forms part of a complex with SMC5-SMC6 This non-structural maintenance of chromosomes (SMC) complex plays an essential role in genomic stability, being involved in DNA repair and DNA metabolism. It is conserved in eukaryotes from yeast to human. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
PF07574	200	SMC_Nse1: Nse1 non-SMC component of SMC5-6 complex	100.0
KOG4718	235	consensus Non-SMC (structural maintenance of chrom	100.0
PF01454	195	MAGE: MAGE family; InterPro: IPR002190 The first m	98.05
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	94.8
KOG4562	329	consensus Uncharacterized conserved protein (tumor	94.56
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	92.73
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	91.86
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	91.13
TIGR02431	248	pcaR_pcaU beta-ketoadipate pathway transcriptional	91.01
PF07848	70	PaaX: PaaX-like protein; InterPro: IPR012906 This	90.82
PRK06266	178	transcription initiation factor E subunit alpha; V	90.7
cd00092	67	HTH_CRP helix_turn_helix, cAMP Regulatory protein	89.61
PRK11569	274	transcriptional repressor IclR; Provisional	89.33
PRK15090	257	DNA-binding transcriptional regulator KdgR; Provis	88.82
PRK10163	271	DNA-binding transcriptional repressor AllR; Provis	88.76
COG1414	246	IclR Transcriptional regulator [Transcription]	88.41
PF03646	107	FlaG: FlaG protein; InterPro: IPR005186 Although t	88.13
PF15615	144	TerB-C: TerB-C domain	87.28
PRK09834	263	DNA-binding transcriptional activator MhpR; Provis	86.22
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	85.77
smart00531	147	TFIIE Transcription initiation factor IIE.	85.16
PRK08452	124	flagellar protein FlaG; Provisional	85.14
PF10122	51	Mu-like_Com: Mu-like prophage protein Com; InterPr	84.51
COG4416	60	Com Mu-like prophage protein Com [General function	83.88
smart00529	96	HTH_DTXR Helix-turn-helix diphteria tox regulatory	83.06
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	81.74

>PF07574 SMC_Nse1: Nse1 non-SMC component of SMC5-6 complex; InterPro: IPR011513 Saccharomyces cerevisiae Nse1 (Q07913 from SWISSPROT) forms part of a complex with SMC5-SMC6

Probab=100.00  E-value=7.1e-48  Score=343.22  Aligned_cols=181  Identities=34%  Similarity=0.442  Sum_probs=129.0

Q ss_pred             hhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCC------CCCchhhHHHHHHHHHhcccccCcEEEEeee-cCCCeEEEEE
Q 022691            6 WKHHALVQALMTRGPLKEKDFHAIFSGLTGKS------PGAHQGLFNEYLLNINKELSSCQFELRACRD-QYVGQVCYGV   78 (293)
Q Consensus         6 ~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~------p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~-q~~g~~~y~l   78 (293)
                      |+||+||||||+||+|++++++++|+.+++..      +..+.+.|++||++||.+|+||+|+|++++| |.+|++||||
T Consensus         1 d~hR~fLQaimsrg~ls~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~I~~IN~~L~~l~~~Ir~~~~~q~~g~~~y~l   80 (200)
T PF07574_consen    1 DVHRAFLQAIMSRGILSEEEAKKLLAKICEAHGDETPNEQITEDDLDEFINEINSKLSPLDFEIRRIRDGQPDGERYYAL   80 (200)
T ss_dssp             HHHHHHHHHHHHSSEEEHHHHHHHHHHHHHH--------------HHHHHHHHHHHHGGGTEEEEEEE--TTT--EEEEE
T ss_pred             ChhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHhhhhcCcEEEEEeccCCCCCEEEEE
Confidence            68999999999999999999999999998721      1135678999999999999999999999999 9999999999


Q ss_pred             EeccCchhhhcCCCCCHHHHHHHHHHHHHHHhcccCCcccch----HHHHHHHhh----hhhh----ccccccccCCCCC
Q 022691           79 VNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISN----IEALNIRLE----NLVL----STQGSQLLNGPLP  146 (293)
Q Consensus        79 VN~~sDe~tklAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss----~~aLnl~~~----~q~~----~~~~~q~~~s~l~  146 (293)
                      ||+.+|+++|+||+|+++||+|||++||+|+.+++  +..+.    +.+++....    ....    ....+++.+++.+
T Consensus        81 VN~~~D~~sklaT~ys~~Ei~ffK~lle~I~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  158 (200)
T PF07574_consen   81 VNTSSDEISKLATTYSPNEIAFFKKLLEEIVESEN--TSRSESASSIMALNEVQAIKLKRPGDPSQWTQGVSYAGGSTQL  158 (200)
T ss_dssp             EESSS-TTHHHHTTS-HHHHHHHHHHHHHHHHSSS--S-EEH----HHHHGGGTT-SSS---H-----------------
T ss_pred             EeCCCCHHHHhcCCCCHHHHHHHHHHHHHHHhCCC--CceehhhHHHHHHHHHHHHHHhccCcccccccccccccccccc
Confidence            99999999999999999999999999999999644  34443    666655210    0000    0001122223334


Q ss_pred             cccCCCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhch
Q 022691          147 AAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDL  188 (293)
Q Consensus       147 ~~~~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL  188 (293)
                      ++.++|++++||.+|++||++|||+++++|+|+||||+|+||
T Consensus       159 ~~~~~L~~~eae~lL~~lv~~gWl~~s~~G~y~L~~Ral~EL  200 (200)
T PF07574_consen  159 AQDKGLSKSEAESLLDRLVEDGWLYRSREGFYSLGPRALLEL  200 (200)
T ss_dssp             --------HHHHHHHHHHHHTTSE-EEETTEEEE-HHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHCCCceeCCCCEEEEChHHHhcC
Confidence            567899999999999999999999999999999999999998

This non-structural maintenance of chromosomes (SMC) complex plays an essential role in genomic stability, being involved in DNA repair and DNA metabolism [, ]. It is conserved in eukaryotes from yeast to human.; PDB: 3NW0_A.

>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]

Probab=100.00  E-value=6.7e-45  Score=320.07  Aligned_cols=207  Identities=24%  Similarity=0.362  Sum_probs=178.6

Q ss_pred             CCchhhHHHHHHHHhCCCCCHHHHHHHHHHhhC--CCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEe
Q 022691            3 SLNWKHHALVQALMTRGPLKEKDFHAIFSGLTG--KSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVN   80 (293)
Q Consensus         3 ~~~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~--~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN   80 (293)
                      .+.|+|+.+||++|+++.+.+-+...+-..+.-  ..| .+.+.+.+||++||..|+.|+++|++++++++|+.||||||
T Consensus         2 ~lvdkh~~~lq~im~~l~leg~d~ir~~~~~~~v~~~~-g~k~~~edfinein~~lhnld~~ikr~~~~~dgr~~lvyvN   80 (235)
T KOG4718|consen    2 ELVDKHFLRLQKIMSYLSLEGIDDIRAPLCANHVTTKP-GSKEAIEDFINEINDTLHNLDQLIKRIKYPVDGREYLVYVN   80 (235)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhhhhhhchhccccccc-chHhHHHHHHHHHHHHHhhhhhhheeeeecCCCceEEEEEe
Confidence            467899999999999999987776655432221  222 46789999999999999999999999999999999999999


Q ss_pred             ccCchhhhcCCCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHH
Q 022691           81 NVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKT  160 (293)
Q Consensus        81 ~~sDe~tklAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~l  160 (293)
                      +.+++++||||+|+++||+||||+||.|+.+. +.+..+++..++++.          |       .+.++|+++++|++
T Consensus        81 la~tp~SkmaT~f~~nEielfrkalE~im~se-d~~~asst~~~~~vl----------q-------~k~k~L~ks~iE~l  142 (235)
T KOG4718|consen   81 LAATPDSKMATGFTANEIELFRKALEKIMSSE-DCHIASSTAYNDIVL----------Q-------AKSKPLKKSRIEEL  142 (235)
T ss_pred             cCCChhHHhcCCCCHHHHHHHHHHHHHHHhhh-HhhhHHHHHHHHHHH----------H-------HhcCCCCHHHHHHH
Confidence            99999999999999999999999999999941 345555554444431          1       14578999999999


Q ss_pred             HHHHHHCCcccccCCccEEeccchhhchHhHHhcC---CCCCchhhhhHHHhC---------------------CCCCCC
Q 022691          161 LDEFVQDQWLCCTPDGKIGLGVRSCLDLRGWFRNL---DVPFCEVCNEAVVKG---------------------EILCPR  216 (293)
Q Consensus       161 L~~Lv~~gWL~~s~~G~y~Lg~RallEL~~yL~~~---~i~~C~~Ck~iv~~g---------------------~~~CP~  216 (293)
                      |++|+++|||.+ .+|.|+|+||||+||+.||.++   .++.|.+|+.+|++|                     ...||+
T Consensus       143 Lqkf~q~gwf~e-~eg~ftl~~ralaELe~YL~s~y~dnlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cph  221 (235)
T KOG4718|consen  143 LQKFIQMGWFME-VEGRFTLGPRALAELEFYLSSNYADNLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPH  221 (235)
T ss_pred             HHHHHHhchhhe-ecceEEEchHHHHHHHHHHHhhhHHHHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCc
Confidence            999999999999 9999999999999999999995   799999999999998                     779999


Q ss_pred             CCCCCCCCCCCcc
Q 022691          217 CGLRWPNQVPKAE  229 (293)
Q Consensus       217 C~~~W~~~~~~~~  229 (293)
                      |+.-|++.++.+.
T Consensus       222 c~d~w~h~I~~v~  234 (235)
T KOG4718|consen  222 CGDLWTHPIRRVI  234 (235)
T ss_pred             hhcccCccccccc
Confidence            9999999988654

>PF01454 MAGE: MAGE family; InterPro: IPR002190 The first mammalian members of the MAGE (melanoma-associated antigen) gene family were originally described as completely silent in normal adult tissues, with the exception of male germ cells and, for some of them, placenta

Probab=98.05  E-value=1.5e-05  Score=70.42  Aligned_cols=161  Identities=20%  Similarity=0.210  Sum_probs=89.4

Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccc-cCcEEEEeeec-------------CCCeE
Q 022691            9 HALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSS-CQFELRACRDQ-------------YVGQV   74 (293)
Q Consensus         9 R~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~-l~~eIr~~~~q-------------~~g~~   74 (293)
                      |++|-.-..+.++.-++..+.+.   +.    ....|..++..+|..|.. |||+++.+...             .++..
T Consensus         3 R~~L~~~~~k~pI~r~~i~k~v~---~~----~~~~f~~v~~~a~~~L~~vFG~eL~ev~~~~~~~~~~~~~~~~~~~~~   75 (195)
T PF01454_consen    3 RYLLFKEQKKQPIRRSDILKKVL---KE----YRRKFPEVFERANEILEDVFGFELVEVPPKKKDKKRASKKSKKSSSSK   75 (195)
T ss_dssp             HHHHHHHHCT--EEHHHHHHHTT---CC----GGGGHHHHHHHHHHHHHHHH-EEEEESSTT-----------------S
T ss_pred             HHHHHHHhCCCCccHHHHHHHHh---HH----HHHHhHHHHHHHHHHHHHHhceEEEEeCCcccccccccccccccccCC
Confidence            33444444466666665554322   11    257789999999999996 89999999654             12478


Q ss_pred             EEEEEeccCchhh-hcCCCCCHH----HHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCccc
Q 022691           75 CYGVVNNVADEQS-KLGTKYTVQ----QIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAF  149 (293)
Q Consensus        75 ~y~lVN~~sDe~t-klAT~yt~~----EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~  149 (293)
                      .|+|+|+.+.+.. .+......+    ...|+--+|-.|+.+   .+.|+..+.++.... -.  .....        ..
T Consensus        76 ~yiL~n~L~~~~~~~~~~~~~~~~~~~~~Gll~~IL~lI~~~---g~~i~E~~L~~~L~~-lg--i~~~~--------~~  141 (195)
T PF01454_consen   76 SYILVNTLPPEYRNELSDDSETPSNLAKTGLLMLILSLIFMS---GNSISEDDLWKFLRR-LG--IDEDE--------KH  141 (195)
T ss_dssp             EEEEEEGCG-S---------SSH----HHHHHHHHHHHHHHC---TT-EEHHHHHHHHHH-TT----TTS---------B
T ss_pred             EEEEEecCCCccceeecCCCCCchhHhHhhHHHHHHHHHHhc---CCccCHHHHHHHHHh-cC--CCccc--------cC
Confidence            9999999887743 355555444    888899999999984   568999888775311 00  00000        11


Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccC-----C-c----cEEeccchhhchHh
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTP-----D-G----KIGLGVRSCLDLRG  190 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~-----~-G----~y~Lg~RallEL~~  190 (293)
                      ..+.+.-.+.+++.||+++||.+..     + +    .|.+|||+.+|+-.
T Consensus       142 ~~~g~~~~~~i~~~~vkq~YL~~~k~~~~~~~~~~~~~y~~G~Ra~~E~~k  192 (195)
T PF01454_consen  142 PILGMDIKKLILKEFVKQGYLVRYKQVPNSDPEEYEFSYSWGPRAKAEFSK  192 (195)
T ss_dssp             TTTB--HHHHHHCHHHHCTSE-EEE----------EEEE---HHHHCC--H
T ss_pred             ccCCCCHHHHHHHHHHHhcCHHheeecCCCCCCceEEEeCCcCchhhccCc
Confidence            2233333344459999999995422     1 1    37789999999753

By contrast, these genes were expressed in various kinds of tumors. However, other members of the family were recently found to be expressed in normal cells, indicating that the family is larger and more disparate than initially expected. MAGE-like genes have also been identified in non-mammalian species, including Drosophila melanogaster (Fruit fly) and Danio rerio (Zebrafish). Although no MAGE homologous sequences have been identified in Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast) or Schizosaccharomyces pombe (Fission yeast), MAGE sequences have been found in several vegetal species, including Arabidopsis thaliana (Mouse-ear cress) []. The only region of homology shared by all of the members of the family is a stretch of about 200 amino acids which has been named the MAGE conserved domain. The MAGE conserved domain is usually located close to the C-terminal, although it can also be found in a more central position in some proteins. The MAGE conserved domain is generally present as a single copy but it is duplicated in some proteins. It has been proposed that the MAGE conserved domain of MAGE-D proteins might interact with p75 neurotrophin or related receptors [].; PDB: 3NW0_B 2WA0_A 1I4F_C.

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=94.80  E-value=0.0039  Score=42.51  Aligned_cols=23  Identities=39%  Similarity=1.038  Sum_probs=13.4

Q ss_pred             chhhhhHHHhCCCCCC--CCCCCCCC
Q 022691          200 CEVCNEAVVKGEILCP--RCGLRWPN  223 (293)
Q Consensus       200 C~~Ck~iv~~g~~~CP--~C~~~W~~  223 (293)
                      |++|++||++|. +||  .|+..|+.
T Consensus         1 C~~C~~iv~~G~-~C~~~~C~~r~H~   25 (43)
T PF08746_consen    1 CEACKEIVTQGQ-RCSNRDCNVRLHD   25 (43)
T ss_dssp             -TTT-SB-SSSE-E-SS--S--EE-H
T ss_pred             CcccchhHeeec-cCCCCccCchHHH
Confidence            899999999997 888  49888873

; PDB: 3NW0_A 2CT0_A.

>KOG4562 consensus Uncharacterized conserved protein (tumor-rejection antigen MAGE in humans) [Function unknown]

Probab=94.56  E-value=0.57  Score=45.29  Aligned_cols=129  Identities=14%  Similarity=0.142  Sum_probs=85.7

Q ss_pred             hhhHHHHHHHHHhcccc-cCcEEEEeeecCCCeEEEEEEeccCchhhh-cCCCCCHHHHHHHHHHHHHHHhcccCCcccc
Q 022691           42 QGLFNEYLLNINKELSS-CQFELRACRDQYVGQVCYGVVNNVADEQSK-LGTKYTVQQIAFFKGILEAIAQDVMAQGSIS  119 (293)
Q Consensus        42 ~~~l~~~I~~IN~~L~~-l~~eIr~~~~q~~g~~~y~lVN~~sDe~tk-lAT~yt~~EI~ffK~lLe~I~~~~~~~g~Is  119 (293)
                      .+.|-.++......|.- |+++++.+   +.....|+|||+..-+... |++...-+-.-|+=-||--||..+   .+++
T Consensus       148 ~d~fp~I~~ras~~le~vfg~~l~ev---d~~~hsyvLv~~L~~~~~~~l~~~~~~Pk~GlLm~iL~iIf~~G---n~a~  221 (329)
T KOG4562|consen  148 KDHFPEIFKRASECLELVFGIDLKEV---DPASHSYVLVSKLGLTYDGLLSDDQGMPKTGLLMIILGIIFMKG---NCAP  221 (329)
T ss_pred             hhhhHHHHHHHhhhhhhhcccceeec---cCCcceEEEeecCCcccccccccCCCccccchHHHHHHHHHhcC---CCCc
Confidence            35567777777777774 78888877   2223499999997754433 578888888899999999999853   4788


Q ss_pred             hHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHH-HHHHHHHHHCCccccc----CCc---cEEeccchhhchH
Q 022691          120 NIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQK-EKTLDEFVQDQWLCCT----PDG---KIGLGVRSCLDLR  189 (293)
Q Consensus       120 s~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~sea-E~lL~~Lv~~gWL~~s----~~G---~y~Lg~RallEL~  189 (293)
                      ...+.+....  .    +.+.       ..+.+---+. +-+.+.||+++||.+-    .++   .|-.||||.+|.-
T Consensus       222 Ee~iWe~L~~--l----Gv~~-------g~~H~ifGeprkLiT~dlVqq~YLeYr~Vp~sdP~~YEFlWGpRA~~Ets  286 (329)
T KOG4562|consen  222 EEEIWEVLRR--L----GVYD-------GREHSIFGEPRKLLTQDLVQEKYLEYRQVPDSDPPRYEFLWGPRAHAETS  286 (329)
T ss_pred             HHHHHHHHHH--h----cCCC-------CccccccCChHHHHHHHHHHhhceeeeecCCCCCCceEEeecccchhhHH
Confidence            8887765210  0    0111       0111222233 3466899999999841    122   6779999999964

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=92.73  E-value=0.057  Score=33.01  Aligned_cols=25  Identities=28%  Similarity=0.825  Sum_probs=22.1

Q ss_pred             CCchhhhhHHHhCCCCCCCCCCCCC
Q 022691          198 PFCEVCNEAVVKGEILCPRCGLRWP  222 (293)
Q Consensus       198 ~~C~~Ck~iv~~g~~~CP~C~~~W~  222 (293)
                      +.|-.|...|-.....||+|+..|.
T Consensus         1 K~CP~C~~~V~~~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    1 KTCPECGAEVPESAKFCPHCGYDFE   25 (26)
T ss_pred             CcCCCCcCCchhhcCcCCCCCCCCc
Confidence            5789999999999999999998885

Several members are annotated as putative helicases.

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=91.86  E-value=0.72  Score=38.64  Aligned_cols=70  Identities=14%  Similarity=0.187  Sum_probs=55.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCC
Q 022691           89 LGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQ  168 (293)
Q Consensus        89 lAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~g  168 (293)
                      ||-.||++|-+-++.-|-+++-.   .|-++-.++..+.                       +++-.-+..+|..||+.|
T Consensus         1 Ma~~~T~eer~eLk~rIvElVRe---~GRiTi~ql~~~T-----------------------GasR~Tvk~~lreLVa~G   54 (127)
T PF06163_consen    1 MARVFTPEEREELKARIVELVRE---HGRITIKQLVAKT-----------------------GASRNTVKRYLRELVARG   54 (127)
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHH---cCCccHHHHHHHH-----------------------CCCHHHHHHHHHHHHHcC
Confidence            67889999999999888888873   6888888876553                       567888999999999999


Q ss_pred             cccccCCccEE--eccchhh
Q 022691          169 WLCCTPDGKIG--LGVRSCL  186 (293)
Q Consensus       169 WL~~s~~G~y~--Lg~Rall  186 (293)
                      =|+.  .|+|+  .+-|+..
T Consensus        55 ~l~~--~G~~GvF~seqA~~   72 (127)
T PF06163_consen   55 DLYR--HGRSGVFPSEQARK   72 (127)
T ss_pred             CeEe--CCCccccccHHHHH
Confidence            9997  45443  4666665

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=91.13  E-value=1.5  Score=33.15  Aligned_cols=44  Identities=11%  Similarity=0.188  Sum_probs=35.4

Q ss_pred             CCCHHHHHHHHHHHHHCCcccccC-CccEEeccchhhchHhHHhc
Q 022691          151 NFTMSQKEKTLDEFVQDQWLCCTP-DGKIGLGVRSCLDLRGWFRN  194 (293)
Q Consensus       151 ~ls~seaE~lL~~Lv~~gWL~~s~-~G~y~Lg~RallEL~~yL~~  194 (293)
                      +++.+-+-..|+.|++.||+.+.. +|.|.||++.+---..|+..
T Consensus        31 ~i~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~~~~~~~~~~~   75 (91)
T smart00346       31 GLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKVLELGQSYLSS   75 (91)
T ss_pred             CCCHHHHHHHHHHHHHCCCeeecCCCCceeecHHHHHHHHHHHhc
Confidence            678889999999999999999863 67999999976544555543

>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family

Probab=91.01  E-value=0.57  Score=42.70  Aligned_cols=39  Identities=18%  Similarity=0.119  Sum_probs=33.7

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchHh
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRG  190 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~~  190 (293)
                      .+|+++-+-.+|..|++.||+.+ .+|.|.||++ +++|..
T Consensus        34 lglpksT~~RlL~tL~~~G~l~~-~~~~Y~lG~~-~~~lg~   72 (248)
T TIGR02431        34 TGLTRAAARRFLLTLVELGYVTS-DGRLFWLTPR-VLRLGY   72 (248)
T ss_pred             HCcCHHHHHHHHHHHHHCCCEEe-CCCEEEecHH-HHHHHH
Confidence            47899999999999999999998 5789999998 566644

Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.

>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT)

Probab=90.82  E-value=1.1  Score=33.74  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=26.9

Q ss_pred             CCCHHHHHHHHHHHHHCCcccccCCc---cEEeccc
Q 022691          151 NFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVR  183 (293)
Q Consensus       151 ~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~R  183 (293)
                      +++..-+-..|.+|+++|||...+.|   +|.|++|
T Consensus        34 Gv~e~avR~alsRl~~~G~L~~~r~Gr~~~Y~Lt~~   69 (70)
T PF07848_consen   34 GVSESAVRTALSRLVRRGWLESERRGRRSYYRLTER   69 (70)
T ss_dssp             T--HHHHHHHHHHHHHTTSEEEECCCTEEEEEE-HH
T ss_pred             CCChHHHHHHHHHHHHcCceeeeecCccceEeeCCC
Confidence            56677778999999999999998888   8999986

PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=90.70  E-value=0.85  Score=40.24  Aligned_cols=74  Identities=12%  Similarity=0.185  Sum_probs=52.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCccccc--C---Cc----cEEeccchhhchHhHHhc---------------CCCCCchhhhh
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCT--P---DG----KIGLGVRSCLDLRGWFRN---------------LDVPFCEVCNE  205 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s--~---~G----~y~Lg~RallEL~~yL~~---------------~~i~~C~~Ck~  205 (293)
                      .+++..++-..|.+|.++|.....  +   .|    .|.|.+.-+.+.-.|=..               +.-..|..|+.
T Consensus        46 Lgi~~~~VRk~L~~L~e~gLv~~~r~r~~~~Gr~~y~w~l~~~~i~d~ik~~~~~~~~klk~~l~~e~~~~~Y~Cp~C~~  125 (178)
T PRK06266         46 TGIKLNTVRKILYKLYDARLADYKREKDEETNWYTYTWKPELEKLPEIIKKKKMEELKKLKEQLEEEENNMFFFCPNCHI  125 (178)
T ss_pred             HCCCHHHHHHHHHHHHHCCCeEEeeeeccCCCcEEEEEEeCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCEEECCCCCc
Confidence            578999999999999999999822  2   24    345766666665554432               24667999986


Q ss_pred             HH-----HhCCCCCCCCCCCCCC
Q 022691          206 AV-----VKGEILCPRCGLRWPN  223 (293)
Q Consensus       206 iv-----~~g~~~CP~C~~~W~~  223 (293)
                      -.     +.....||.|+..--.
T Consensus       126 rytf~eA~~~~F~Cp~Cg~~L~~  148 (178)
T PRK06266        126 RFTFDEAMEYGFRCPQCGEMLEE  148 (178)
T ss_pred             EEeHHHHhhcCCcCCCCCCCCee
Confidence            53     3347899999987654

>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family

Probab=89.61  E-value=1.9  Score=30.50  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=28.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccCCccEEecc
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGV  182 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~  182 (293)
                      -+++..-+...|+.|++.||+.....|.|.|+|
T Consensus        35 ~g~s~~tv~r~l~~L~~~g~i~~~~~~~~~l~~   67 (67)
T cd00092          35 LGLTRETVSRTLKELEEEGLISRRGRGKYRVNP   67 (67)
T ss_pred             HCCCHHHHHHHHHHHHHCCCEEecCCCeEEeCC
Confidence            367888999999999999999985568999876

>PRK11569 transcriptional repressor IclR; Provisional

Probab=89.33  E-value=0.92  Score=42.15  Aligned_cols=38  Identities=13%  Similarity=0.201  Sum_probs=32.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccC-CccEEeccchhhch
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTP-DGKIGLGVRSCLDL  188 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~-~G~y~Lg~RallEL  188 (293)
                      .+|.++-+-.+|..|++.|||.+.. .|.|.||+|. ++|
T Consensus        53 lglpksTv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l-~~L   91 (274)
T PRK11569         53 AGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHA-FIV   91 (274)
T ss_pred             HCcCHHHHHHHHHHHHHCCCEEEcCCCCeEecCHHH-HHH
Confidence            4788999999999999999998754 5899999996 444

>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional

Probab=88.82  E-value=1  Score=41.23  Aligned_cols=39  Identities=13%  Similarity=0.117  Sum_probs=32.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccC-CccEEeccchhhchH
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTP-DGKIGLGVRSCLDLR  189 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~-~G~y~Lg~RallEL~  189 (293)
                      .+|+++-+-.+|..|++.||+.+.. +|.|.||++. ++|.
T Consensus        38 lgl~kstv~Rll~tL~~~G~l~~~~~~~~Y~lG~~~-~~lg   77 (257)
T PRK15090         38 VMMSKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKL-FELG   77 (257)
T ss_pred             HCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEecHHH-HHHH
Confidence            4788999999999999999998854 5899999996 3444

>PRK10163 DNA-binding transcriptional repressor AllR; Provisional

Probab=88.76  E-value=1.1  Score=41.52  Aligned_cols=42  Identities=10%  Similarity=0.123  Sum_probs=34.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccC-CccEEeccchhhchHhHH
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTP-DGKIGLGVRSCLDLRGWF  192 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~-~G~y~Lg~RallEL~~yL  192 (293)
                      .+++++-+-.+|..|++.|||.+.. .|.|.||+|.+. |...+
T Consensus        50 lglpkStv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~~-Lg~~~   92 (271)
T PRK10163         50 LDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFN-VGAAY   92 (271)
T ss_pred             HCcCHHHHHHHHHHHHHCCCEEEcCCCCeEEecHHHHH-HHHHH
Confidence            4789999999999999999998854 589999999743 44433

>COG1414 IclR Transcriptional regulator [Transcription]

Probab=88.41  E-value=0.46  Score=43.71  Aligned_cols=45  Identities=20%  Similarity=0.196  Sum_probs=36.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccC-CccEEeccchhhchHhHHhc
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTP-DGKIGLGVRSCLDLRGWFRN  194 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~-~G~y~Lg~RallEL~~yL~~  194 (293)
                      .++.++-+-.+|..|++.||+.++. +|.|.||+|.+-==..|+..
T Consensus        29 ~glpksT~~RlL~tL~~~G~v~~d~~~g~Y~Lg~~~~~lg~~~l~~   74 (246)
T COG1414          29 LGLPKSTVHRLLQTLVELGYVEQDPEDGRYRLGPRLLELGAAALSS   74 (246)
T ss_pred             hCcCHHHHHHHHHHHHHCCCEEEcCCCCcEeehHHHHHHHHHHHhc
Confidence            4788999999999999999999987 47999999966444444443

>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown

Probab=88.13  E-value=0.85  Score=36.45  Aligned_cols=49  Identities=20%  Similarity=0.249  Sum_probs=41.5

Q ss_pred             CchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccCchhhh
Q 022691           40 AHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVADEQSK   88 (293)
Q Consensus        40 ~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~sDe~tk   88 (293)
                      ...+.+.+.|..||..+..++-.++...|+.+|..++-++|...+++.+
T Consensus        34 ~~~e~l~~~v~~ln~~~~~~~~~l~F~vde~~~~~vVkViD~~T~eVIR   82 (107)
T PF03646_consen   34 PSKEELEEAVEKLNEFLQALNTSLRFSVDEESGRVVVKVIDKETGEVIR   82 (107)
T ss_dssp             --HHHHHHHHHHHHHHHTTSS--EEEEEEEETTEEEEEEEETTT-SEEE
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEE
Confidence            5678999999999999999999999999999999999999999988755

; PDB: 2HC5_A.

>PF15615 TerB-C: TerB-C domain

Probab=87.28  E-value=1.2  Score=37.74  Aligned_cols=54  Identities=19%  Similarity=0.203  Sum_probs=43.1

Q ss_pred             CCchhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccc-cCcEEE
Q 022691            3 SLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSS-CQFELR   64 (293)
Q Consensus         3 ~~~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~-l~~eIr   64 (293)
                      .|+..|..||.+|++++-.+-+++..+....        .-.++-+|..||.++-. ||--+.
T Consensus        73 gLd~~~~~lL~~Ll~~~~w~r~e~~~~a~~~--------glm~~~~ie~INE~afd~~gd~vi  127 (144)
T PF15615_consen   73 GLDEEHSALLRALLSRESWSREELEDIARDH--------GLMPDGAIESINEKAFDYFGDPVI  127 (144)
T ss_pred             CCCHHHHHHHHHHHhCCCccHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHhcCCeeE
Confidence            5788999999999999999999999887744        23468899999988753 554443

>PRK09834 DNA-binding transcriptional activator MhpR; Provisional

Probab=86.22  E-value=2  Score=39.61  Aligned_cols=44  Identities=9%  Similarity=0.185  Sum_probs=34.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccC-CccEEeccchhhchHhHHh
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTP-DGKIGLGVRSCLDLRGWFR  193 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~-~G~y~Lg~RallEL~~yL~  193 (293)
                      .+++++-+-.+|+.|++.||+.+.. .|.|.||+|.+-=-..|+.
T Consensus        36 lgl~kstv~RlL~tL~~~g~v~~~~~~~~Y~Lg~~~~~l~~~~~~   80 (263)
T PRK09834         36 TGLHRTTVRRLLETLQEEGYVRRSASDDSFRLTLKVRQLSEGFRD   80 (263)
T ss_pred             HCcCHHHHHHHHHHHHHCCCEEEecCCCcEEEcHHHHHHHHhhhc
Confidence            3688999999999999999999864 5899999987653334443

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=85.77  E-value=2.7  Score=36.30  Aligned_cols=73  Identities=15%  Similarity=0.168  Sum_probs=49.7

Q ss_pred             CCCCHHHHHHHHHHHHHCCccccc-----CCc----cEEeccchhhchHhHHhc---------------CCCCCchhhhh
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCT-----PDG----KIGLGVRSCLDLRGWFRN---------------LDVPFCEVCNE  205 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s-----~~G----~y~Lg~RallEL~~yL~~---------------~~i~~C~~Ck~  205 (293)
                      .+++..+.-.+|.+|.++|-....     ..|    .|.+.+.-+.+.-.|=..               +.-..|..|+.
T Consensus        38 Lgi~~~~VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~~i~d~Ik~~~~~~~~~lk~~l~~e~~~~~Y~Cp~c~~  117 (158)
T TIGR00373        38 LGIKLNEVRKALYALYDAGLADYKRRKDDETGWYEYTWRINYEKALDVLKRKLEETAKKLREKLEFETNNMFFICPNMCV  117 (158)
T ss_pred             HCCCHHHHHHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEECCCCCc
Confidence            478899999999999999988432     123    235666665554444321               24667999996


Q ss_pred             HHHh-----CCCCCCCCCCCCC
Q 022691          206 AVVK-----GEILCPRCGLRWP  222 (293)
Q Consensus       206 iv~~-----g~~~CP~C~~~W~  222 (293)
                      -.+.     ....||.|+..-.
T Consensus       118 r~tf~eA~~~~F~Cp~Cg~~L~  139 (158)
T TIGR00373       118 RFTFNEAMELNFTCPRCGAMLD  139 (158)
T ss_pred             EeeHHHHHHcCCcCCCCCCEee
Confidence            5433     3789999998743

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>smart00531 TFIIE Transcription initiation factor IIE

Probab=85.16  E-value=1.4  Score=37.38  Aligned_cols=72  Identities=18%  Similarity=0.246  Sum_probs=47.7

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccc------cC-Cc-----cEEeccchhhchHhHHhc---------------CCCCCchh
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCC------TP-DG-----KIGLGVRSCLDLRGWFRN---------------LDVPFCEV  202 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~------s~-~G-----~y~Lg~RallEL~~yL~~---------------~~i~~C~~  202 (293)
                      .+|...+.-.+|.+|.++|-...      .. .|     +|.+..+-+.+.-.|=..               +....|..
T Consensus        25 l~i~~n~vRkiL~~L~ed~~~~~~~~~e~~~~~~~~~~~yw~i~y~~~~~vik~r~~~~~~~L~~~l~~e~~~~~Y~Cp~  104 (147)
T smart00531       25 LGIKQKQLRKILYLLYDEKLIKIDYKREKDPETKTWYRYYWYINYDTLLDVVKYKLDKMRKRLEDKLEDETNNAYYKCPN  104 (147)
T ss_pred             hCCCHHHHHHHHHHHHhhhcchhheeeeeCCCCceEEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHhcccCCcEEECcC
Confidence            36788888899999999766421      11 23     566887777765544332               25778999


Q ss_pred             hhhHHHhC----------CCCCCCCCCCC
Q 022691          203 CNEAVVKG----------EILCPRCGLRW  221 (293)
Q Consensus       203 Ck~iv~~g----------~~~CP~C~~~W  221 (293)
                      |+.....-          ...||.|+..-
T Consensus       105 C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l  133 (147)
T smart00531      105 CQSKYTFLEANQLLDMDGTFTCPRCGEEL  133 (147)
T ss_pred             CCCEeeHHHHHHhcCCCCcEECCCCCCEE
Confidence            98764321          37899998764

>PRK08452 flagellar protein FlaG; Provisional

Probab=85.14  E-value=1.7  Score=36.26  Aligned_cols=49  Identities=10%  Similarity=0.121  Sum_probs=44.7

Q ss_pred             CchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccCchhhh
Q 022691           40 AHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVADEQSK   88 (293)
Q Consensus        40 ~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~sDe~tk   88 (293)
                      .....|.+.+.++|..++.++-.++...|+..|..|.=+|+...+++.+
T Consensus        50 ~~~e~l~~~ve~lN~~~~~~~~~L~F~~de~~~~~vVkVvD~~T~eVIR   98 (124)
T PRK08452         50 QLKKKLEELTEKLNEEMKRLDTNIRFGYNDKIKGLVVSVKEANGGKVIR   98 (124)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCceEEEEcCCCCcEEEEEEECCCCceee
Confidence            4567899999999999999999999999999999998899999998766

>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ]

Probab=84.51  E-value=0.38  Score=34.06  Aligned_cols=25  Identities=40%  Similarity=0.740  Sum_probs=21.2

Q ss_pred             CchhhhhHHHhC------CCCCCCCCCCCCC
Q 022691          199 FCEVCNEAVVKG------EILCPRCGLRWPN  223 (293)
Q Consensus       199 ~C~~Ck~iv~~g------~~~CP~C~~~W~~  223 (293)
                      .|..|+.++.++      +.+||.|++.-+-
T Consensus         6 RC~~CnklLa~~g~~~~leIKCpRC~tiN~~   36 (51)
T PF10122_consen    6 RCGHCNKLLAKAGEVIELEIKCPRCKTINHV   36 (51)
T ss_pred             eccchhHHHhhhcCccEEEEECCCCCccceE
Confidence            599999998883      8899999997654

>COG4416 Com Mu-like prophage protein Com [General function prediction only]

Probab=83.88  E-value=0.54  Score=33.77  Aligned_cols=23  Identities=35%  Similarity=0.735  Sum_probs=19.0

Q ss_pred             CchhhhhHHHhC------CCCCCCCCCCC
Q 022691          199 FCEVCNEAVVKG------EILCPRCGLRW  221 (293)
Q Consensus       199 ~C~~Ck~iv~~g------~~~CP~C~~~W  221 (293)
                      .|..|+.++...      ..+||.|+..=
T Consensus         6 RC~~CnKlLa~a~~~~yle~KCPrCK~vN   34 (60)
T COG4416           6 RCAKCNKLLAEAEGQAYLEKKCPRCKEVN   34 (60)
T ss_pred             ehHHHhHHHHhcccceeeeecCCccceee
Confidence            599999998665      78999999753

>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element

Probab=83.06  E-value=2.1  Score=32.78  Aligned_cols=43  Identities=19%  Similarity=0.163  Sum_probs=35.6

Q ss_pred             CCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchHhHHh
Q 022691          151 NFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRGWFR  193 (293)
Q Consensus       151 ~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~~yL~  193 (293)
                      +++++-.-..|++|++.||+.+.+++.|.|++.+.--+..+..
T Consensus        10 ~is~stvs~~l~~L~~~glI~r~~~~~~~lT~~g~~~~~~~~~   52 (96)
T smart00529       10 NVSPPTVTQMLKKLEKDGLVEYEPYRGITLTEKGRRLARRLLR   52 (96)
T ss_pred             CCChHHHHHHHHHHHHCCCEEEcCCCceEechhHHHHHHHHHH
Confidence            5777888889999999999999887899999987766555543

iron dependent repressor

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=81.74  E-value=0.66  Score=35.71  Aligned_cols=34  Identities=29%  Similarity=0.746  Sum_probs=11.1

Q ss_pred             CCCchhhhhHHHh-CCCCCCCCCCCCCCCCCCccc
Q 022691          197 VPFCEVCNEAVVK-GEILCPRCGLRWPNQVPKAEI  230 (293)
Q Consensus       197 i~~C~~Ck~iv~~-g~~~CP~C~~~W~~~~~~~~~  230 (293)
                      -|.|..|.+-=.+ |...||.|++.+....+...+
T Consensus        36 fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V   70 (80)
T PF14569_consen   36 FPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRV   70 (80)
T ss_dssp             ----HHHHHHHHHTS-SB-TTT--B----TT----
T ss_pred             CccchhHHHHHhhcCcccccccCCCcccccCCCCC
Confidence            3445555544333 488999999998865444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	293
3nw0_A	238	Crystal Structure Of Mageg1 And Nse1 Complex Length		2e-11

>pdb|3NW0|A Chain A, Crystal Structure Of Mageg1 And Nse1 Complex Length = 238

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 98/248 (39%), Gaps = 47/248 (18%)
Query: 8   HHALVQALMTRGPLKEKDFHAIFSG-LTGKSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
           H   +Q LMT G L+E D   + +         A      +++ NIN  L S   E++  
Sbjct: 7   HRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKRG 66
Query: 67  RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
             +  G+  Y +VN      SK+ T +   ++  F+  LE I        S +NI     
Sbjct: 67  VTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSETGFASSTNI----- 121
Query: 127 RLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCL 186
              NLV   +G ++               + E+ L +FVQ++WL    +G+  L  R+ L
Sbjct: 122 --LNLVDQLKGKKMRK------------KEAEQVLQKFVQNKWL-IEKEGEFTLHGRAIL 166
Query: 187 DLRGWFRNL---DVPFCEVCNEAVVKG-----------------------EILCPRCGLR 220
           ++  + R      V  C +C+  +++G                       E  CP C   
Sbjct: 167 EMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226
Query: 221 WPNQVPKA 228
           WP+++PK 
Sbjct: 227 WPHEIPKV 234

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
3nw0_A	238	Non-structural maintenance of chromosomes element	2e-45

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score =  152 bits (385), Expect = 2e-45
 Identities = 54/251 (21%), Positives = 94/251 (37%), Gaps = 47/251 (18%)

Query: 4   LNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPG-AHQGLFNEYLLNINKELSSCQFE 62
           +   H   +Q LMT G L+E D   + +         A      +++ NIN  L S   E
Sbjct: 3   MTDVHRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLESLYIE 62

Query: 63  LRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIE 122
           ++    +  G+  Y +VN      SK+ T +   ++  F+  LE I       G  S+  
Sbjct: 63  IKRGVTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDS--ETGFASSTN 120

Query: 123 ALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGV 182
            LN+                       +     + E+ L +FVQ++WL     G+  L  
Sbjct: 121 ILNLVD-----------------QLKGKKMRKKEAEQVLQKFVQNKWLIEKE-GEFTLHG 162

Query: 183 RSCLDLRGWFR---NLDVPFCEVCNEAVVKGEI-----------------------LCPR 216
           R+ L++  + R      V  C +C+  +++G+                         CP 
Sbjct: 163 RAILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 222

Query: 217 CGLRWPNQVPK 227
           C   WP+++PK
Sbjct: 223 CNDYWPHEIPK 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
3nw0_A	238	Non-structural maintenance of chromosomes element	100.0
3nw0_B	217	Melanoma-associated antigen G1; E3 ligase, Zn, met	97.4
2wa0_A	240	Melanoma-associated antigen 4; immune system, mult	97.37
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	96.53
3mq0_A	275	Transcriptional repressor of the blcabc operon; he	92.49
1on2_A	142	Transcriptional regulator MNTR; helix-turn-helix,	91.93
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	91.09
1mkm_A	249	ICLR transcriptional regulator; structural genomic	88.39
3r4k_A	260	Transcriptional regulator, ICLR family; DNA/RNA-bi	88.12
2xrn_A	241	HTH-type transcriptional regulator TTGV; DNA-bindi	87.83
3kfw_X	247	Uncharacterized protein; structural genomics, PSI-	87.22
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	86.42
2hc5_A	117	ORF 99, hypothetical protein YVYC; NESG, GFT-PSI,	85.98
2x4h_A	139	Hypothetical protein SSO2273; transcription; 2.30A	85.81
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	85.35
2o0y_A	260	Transcriptional regulator; ICLR-family, structural	83.57
3cuq_B	218	Vacuolar protein-sorting-associated protein 36; ES	80.89
3jth_A	98	Transcription activator HLYU; transcription factor	80.89
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	80.23

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=100.00  E-value=4.7e-59  Score=424.05  Aligned_cols=207  Identities=27%  Similarity=0.483  Sum_probs=189.6

Q ss_pred             CCchhhHHHHHHHHhCCCCCHHHHHHHHHHhhCC-CCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEec
Q 022691            3 SLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGK-SPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNN   81 (293)
Q Consensus         3 ~~~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~-~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~   81 (293)
                      .|+|+||+||||||+||+|+++++++|++.++.. ....+.+.|++||++||.+|+||+|+|+++++|++|++||||||+
T Consensus         2 ~y~d~hR~fLQa~msrg~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~I~~IN~~L~~l~~~Ir~~~~q~~g~~~y~lVN~   81 (238)
T 3nw0_A            2 VMTDVHRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKRGVTEDDGRPIYALVNL   81 (238)
T ss_dssp             CCCHHHHHHHHHHHHSSEEEHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHGGGTEEEEEEECTTTCCEEEEEEES
T ss_pred             CcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhhhcCcEEEEeecCCCCCEEEEEEeC
Confidence            5999999999999999999999999999988752 222356789999999999999999999999999999999999999


Q ss_pred             cCchhhhcCCCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHH
Q 022691           82 VADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTL  161 (293)
Q Consensus        82 ~sDe~tklAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL  161 (293)
                      .+|+++|+||+||++||+|||++||+|++  +++|.+++++|||++.               ++  ..++||+++||.+|
T Consensus        82 ~~d~~~klaT~yt~~Ei~~fk~lle~i~~--s~~~~~s~~~~lnl~~---------------~~--~~k~l~~~eae~lL  142 (238)
T 3nw0_A           82 ATTSISKMATDFAENELDLFRKALELIID--SETGFASSTNILNLVD---------------QL--KGKKMRKKEAEQVL  142 (238)
T ss_dssp             SSCTTHHHHTTSCHHHHHHHHHHHHHHHH--SSSSCEEHHHHHGGGT---------------TC--SSSCCCHHHHHHHH
T ss_pred             CCCHHHhhccCCCHHHHHHHHHHHHHHHh--CCCCceeHHHHHHHHh---------------hc--ccCCCCHHHHHHHH
Confidence            99999999999999999999999999999  5688999999999851               11  24789999999999


Q ss_pred             HHHHHCCcccccCCccEEeccchhhchHhHHhcC---CCCCchhhhhHHHhC-----------------------CCCCC
Q 022691          162 DEFVQDQWLCCTPDGKIGLGVRSCLDLRGWFRNL---DVPFCEVCNEAVVKG-----------------------EILCP  215 (293)
Q Consensus       162 ~~Lv~~gWL~~s~~G~y~Lg~RallEL~~yL~~~---~i~~C~~Ck~iv~~g-----------------------~~~CP  215 (293)
                      ++||++|||.. .+|.|+||||+|+||++||+++   .++.|.+|++||++|                       ...||
T Consensus       143 ~~lv~~gWl~~-~~g~~~l~~R~l~El~~~l~~~~~~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP  221 (238)
T 3nw0_A          143 QKFVQNKWLIE-KEGEFTLHGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCP  221 (238)
T ss_dssp             HHHHHTTSEEE-ETTEEEECHHHHHHHHHHHHHHCTTTCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCT
T ss_pred             HHHHHhcchhh-hCCEEEecCccHHHHHHHHHHhcCCCCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCC
Confidence            99999999998 6999999999999999999985   699999999999988                       45999


Q ss_pred             CCCCCCCCCCCCcc
Q 022691          216 RCGLRWPNQVPKAE  229 (293)
Q Consensus       216 ~C~~~W~~~~~~~~  229 (293)
                      .|++.|++..|++.
T Consensus       222 ~C~~~W~~~~~~~~  235 (238)
T 3nw0_A          222 HCNDYWPHEIPKVF  235 (238)
T ss_dssp             TTCCBCCSCCCCCC
T ss_pred             CCCCCCCCCCCCCC
Confidence            99999999999887

>3nw0_B Melanoma-associated antigen G1; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.40  E-value=0.0023  Score=56.94  Aligned_cols=158  Identities=18%  Similarity=0.255  Sum_probs=103.0

Q ss_pred             hhhHHHHHHHHh----CCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhccc-ccCcEEEEeeecCCCeEEEEEEe
Q 022691            6 WKHHALVQALMT----RGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELS-SCQFELRACRDQYVGQVCYGVVN   80 (293)
Q Consensus         6 ~~HR~fLQalms----rg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~-~l~~eIr~~~~q~~g~~~y~lVN   80 (293)
                      ..-..++|+|+.    +-+++-.+..+++..-       ..+.|..++..++..|. -||++++.+.   .....|+|||
T Consensus        10 ~kv~~LVrflL~k~~~k~pI~r~emlk~V~~~-------y~~~F~~I~~~A~e~L~~vFG~elkEvd---~~~~~YiLv~   79 (217)
T 3nw0_B           10 LKVSELVQFLLIKDQKKIPIKRADILKHVIGD-------YKDIFPDLFKRAAERLQYVFGYKLVELE---PKSNTYILIN   79 (217)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEHHHHHHHTTGG-------GGGGHHHHHHHHHHHHHHHHCEEEEESS---TTCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhhCCCCccHHHHHHHHhHH-------hhHHHHHHHHHHHHHHHHHcCeEEEEec---CCCceEEEEE
Confidence            334456666653    7788877776544322       24679999999999998 5999999983   3456899999


Q ss_pred             ccC-chh-hhcCCCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHH
Q 022691           81 NVA-DEQ-SKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKE  158 (293)
Q Consensus        81 ~~s-De~-tklAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE  158 (293)
                      +-. ..- ..+...-..+...++--+|-.|+.+   .++++..+..+....-.+   .   .       .....--.+..
T Consensus        80 ~L~pl~~~~~l~~~~~~pk~GLL~~IL~~Ifm~---Gn~~~Ee~lw~~L~~lgv---~---~-------g~~h~i~Ge~r  143 (217)
T 3nw0_B           80 TLEPVEEDAEMRGDQGTPTTGLLMIVLGLIFMK---GNTLKETEAWDFLRRLGV---Y---P-------TKKHLIFGDPK  143 (217)
T ss_dssp             CSCCCC----CCC-CCCHHHHHHHHHHHHHHHT---TTCBCHHHHHHHHHHC-C---C---C-----------------H
T ss_pred             CCCccccCCccCCcccccchhHHHHHHHHHHhc---CCCCCHHHHHHHHHhcCC---C---C-------CCcCCcCCCHH
Confidence            875 222 2366666778899999999999985   458999888765311000   0   0       00111223666


Q ss_pred             HHH-HHHHHCCcccccC----C---ccEEeccchhhchH
Q 022691          159 KTL-DEFVQDQWLCCTP----D---GKIGLGVRSCLDLR  189 (293)
Q Consensus       159 ~lL-~~Lv~~gWL~~s~----~---G~y~Lg~RallEL~  189 (293)
                      ++| +.||++|||.+..    +   =.|..||||.+|.-
T Consensus       144 klit~~lV~e~YLey~qvp~sdp~~yeflWGpRA~aEts  182 (217)
T 3nw0_B          144 KLITEDFVRQRYLEYRRIPHTDPVDYEFQWGPRTNLELS  182 (217)
T ss_dssp             HHHHHHHHHHTCEECC---------CCEECCHHHHTTCC
T ss_pred             HHHHHHHHHcCCeEEEeecCCCCCeEEEEEcCchhhhcC
Confidence            777 8999999998631    1   26889999999853

>2wa0_A Melanoma-associated antigen 4; immune system, multiple anomalous dispersion, cancer/testis 1.4, melanoma antigen family A 4, CT1.4, MAGE-41; 2.30A {Homo sapiens}

Probab=97.37  E-value=0.00088  Score=60.50  Aligned_cols=155  Identities=14%  Similarity=0.127  Sum_probs=102.3

Q ss_pred             HHHHHHHH----hCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhccc-ccCcEEEEeeecCCCeEEEEEEeccC
Q 022691            9 HALVQALM----TRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELS-SCQFELRACRDQYVGQVCYGVVNNVA   83 (293)
Q Consensus         9 R~fLQalm----srg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~-~l~~eIr~~~~q~~g~~~y~lVN~~s   83 (293)
                      ..++|+++    .+.+++-.++.+.+.   +    ...+.|..++...+..|. -|||+++-+..   ....|+|||+..
T Consensus        38 ~~LVrflL~k~~~k~pI~radilk~V~---~----~~~~~f~~I~~~A~~~L~~vFG~eL~Ev~~---~~~~YiLvs~L~  107 (240)
T 2wa0_A           38 DELAHFLLRKYRAKELVTKAEMLERVI---K----NYKRCFPVIFGKASESLKMIFGIDVKEVDP---TSNTYTLVTCLG  107 (240)
T ss_dssp             HHHHHHHHHHHHTTCCEEHHHHHHHTC---T----TCGGGHHHHHHHHHHHHHHHHCEEEEECC-----CCEEEEEEGGG
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHhcCeEEEEEcC---CCCeEEEEeCCC
Confidence            44555555    377777777655422   1    134679999999999999 59999998832   356899999965


Q ss_pred             chhhh-cCCCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHH-
Q 022691           84 DEQSK-LGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTL-  161 (293)
Q Consensus        84 De~tk-lAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL-  161 (293)
                      -+... +...-..+...|+--+|-.|+..   .++|+..+..+....  . ...   .+       .+..---+..++| 
T Consensus       108 ~~~~~~l~~~~~~pk~GLL~~IL~~Ifm~---gn~~~Ee~Lw~~L~~--l-gv~---~g-------~~h~ifG~~rklit  171 (240)
T 2wa0_A          108 LSYDGLLGNNQIFPKTGLLIIVLGTIAME---GDSASEEEIWEELGV--M-GVY---DG-------REHTVYGEPRKLLT  171 (240)
T ss_dssp             CSCCCCC--CCSSCCHHHHHHHHHHHHHH---SSCEEHHHHHHHHHH--T-TCC---TT-------SCBTTTBCHHHHHH
T ss_pred             CccccccccccccchhhHHHHHHHHHHHc---CCCCCHHHHHHHHHh--c-CCC---CC-------CcCcCCCCHHHHHH
Confidence            44332 44444566788999999999985   468998887765210  0 000   00       0011112467788 


Q ss_pred             HHHHHCCcccccC----C---ccEEeccchhhchH
Q 022691          162 DEFVQDQWLCCTP----D---GKIGLGVRSCLDLR  189 (293)
Q Consensus       162 ~~Lv~~gWL~~s~----~---G~y~Lg~RallEL~  189 (293)
                      +.||++|||.+..    +   =.|..||||.+|.-
T Consensus       172 ~~~Vkq~YLe~~qv~~sdp~~~ef~WGpRA~aE~s  206 (240)
T 2wa0_A          172 QDWVQENYLEYRQVPGSNPARYEFLWGPRALAETS  206 (240)
T ss_dssp             THHHHTTSEEEECC------CCEEEECHHHHHHCC
T ss_pred             HHHHHcCCeEEEeecCCCCCeEEEEEcCchhhhcC
Confidence            7899999998742    1   28999999999964

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.53  E-value=0.00078  Score=50.15  Aligned_cols=34  Identities=32%  Similarity=1.024  Sum_probs=29.7

Q ss_pred             CCCCchhhhhHHHhC---------------------C--CCCCCCCCCCCCCCCCcc
Q 022691          196 DVPFCEVCNEAVVKG---------------------E--ILCPRCGLRWPNQVPKAE  229 (293)
Q Consensus       196 ~i~~C~~Ck~iv~~g---------------------~--~~CP~C~~~W~~~~~~~~  229 (293)
                      .+..|.+|+++++.|                     .  ..||.|+..|+...+++.
T Consensus        14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~~   70 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKSG   70 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCCC
T ss_pred             CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCCC
Confidence            689999999998876                     3  789999999999888765

>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}

Probab=92.49  E-value=0.17  Score=45.71  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=32.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchHhH
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRGW  191 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~~y  191 (293)
                      .+|+++-+-.+|..|++.||+.+..+|.|.||+|. ++|...
T Consensus        55 lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y~LG~~~-~~lg~~   95 (275)
T 3mq0_A           55 LDLPKSSAHGLLAVMTELDLLARSADGTLRIGPHS-LRWANG   95 (275)
T ss_dssp             HTCC--CHHHHHHHHHHTTSEEECTTSEEEECTHH-HHHHHH
T ss_pred             HCcCHHHHHHHHHHHHHCCCEEECCCCcEEehHHH-HHHHHH
Confidence            36888899999999999999999878999999985 456443

>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*

Probab=91.93  E-value=0.72  Score=36.51  Aligned_cols=70  Identities=13%  Similarity=0.066  Sum_probs=51.1

Q ss_pred             CCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCcccc
Q 022691           93 YTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCC  172 (293)
Q Consensus        93 yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL~~  172 (293)
                      +|+.+-.|++.++..+-.    .+.++..++-..                       -+++++-+-..|++|++.||+.+
T Consensus         2 ls~~~~~~L~~i~~l~~~----~~~~~~~ela~~-----------------------l~vs~~tvs~~l~~Le~~Glv~r   54 (142)
T 1on2_A            2 TTPSMEMYIEQIYMLIEE----KGYARVSDIAEA-----------------------LAVHPSSVTKMVQKLDKDEYLIY   54 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHH----HSSCCHHHHHHH-----------------------HTSCHHHHHHHHHHHHHTTSEEE
T ss_pred             CChHHHHHHHHHHHHHhh----cCCCCHHHHHHH-----------------------hCCCHHHHHHHHHHHHHCCCEEE
Confidence            567788888888876654    234555544221                       35778888899999999999998


Q ss_pred             cCCccEEeccchhhchH
Q 022691          173 TPDGKIGLGVRSCLDLR  189 (293)
Q Consensus       173 s~~G~y~Lg~RallEL~  189 (293)
                      .+.+.|.|++...--+.
T Consensus        55 ~~~~~~~LT~~g~~~~~   71 (142)
T 1on2_A           55 EKYRGLVLTSKGKKIGK   71 (142)
T ss_dssp             ETTTEEEECHHHHHHHH
T ss_pred             eeCceEEEchhHHHHHH
Confidence            78889999997654433

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=91.09  E-value=0.55  Score=33.35  Aligned_cols=32  Identities=6%  Similarity=0.103  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccCCccEEec
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLG  181 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg  181 (293)
                      .+++.+.+...|..|.+.||+..+..|+|.||
T Consensus        35 lglsr~tv~~~l~~L~~~G~I~~~~~G~y~lg   66 (67)
T 2heo_A           35 CQVPKKTLNQVLYRLKKEDRVSSPSPKYWSIG   66 (67)
T ss_dssp             HCSCHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred             HCcCHHHHHHHHHHHHHCCcEecCCCceEeeC
Confidence            36889999999999999999987778999987

>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2

Probab=88.39  E-value=0.98  Score=39.75  Aligned_cols=39  Identities=13%  Similarity=0.118  Sum_probs=33.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchH
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLR  189 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~  189 (293)
                      .+++++-+-.+|+.|++.||+.+..+|.|.||++.+ +|.
T Consensus        33 ~gl~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~-~l~   71 (249)
T 1mkm_A           33 FNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLI-EYG   71 (249)
T ss_dssp             TTCCHHHHHHHHHHHHHTTSEEECTTSCEEECTHHH-HHH
T ss_pred             HCcCHHHHHHHHHHHHHCCcEEECCCCcEEECHHHH-HHH
Confidence            478999999999999999999986578999999964 443

>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}

Probab=88.12  E-value=0.39  Score=42.83  Aligned_cols=41  Identities=10%  Similarity=0.120  Sum_probs=34.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccCC-ccEEeccchhhchHhH
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTPD-GKIGLGVRSCLDLRGW  191 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~~-G~y~Lg~RallEL~~y  191 (293)
                      .+|+++-+-.+|..|++.||+.+..+ |.|.||+|.+ +|...
T Consensus        31 lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~~~-~lg~~   72 (260)
T 3r4k_A           31 SGMNKATVYRLMSELQEAGFVEQVEGARSYRLGPQVL-RLAAL   72 (260)
T ss_dssp             HCSCHHHHHHHHHHHHHTTSEEECSSSSEEEECTTHH-HHHHH
T ss_pred             HCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHHHH-HHHHH
Confidence            47899999999999999999999776 8999999954 55443

>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A

Probab=87.83  E-value=0.75  Score=40.41  Aligned_cols=36  Identities=11%  Similarity=0.137  Sum_probs=31.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccCC-ccEEeccchh
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTPD-GKIGLGVRSC  185 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~~-G~y~Lg~Ral  185 (293)
                      .+++++-+-.+|+.|++.||+.+..+ |.|.||+|.+
T Consensus        31 ~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~~   67 (241)
T 2xrn_A           31 VGLPRSTVQRIINALEEEFLVEALGPAGGFRLGPALG   67 (241)
T ss_dssp             TTSCHHHHHHHHHHHHTTTSEEECGGGCEEEECSHHH
T ss_pred             HCcCHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHHH
Confidence            37889999999999999999998654 8999999864

>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}

Probab=87.22  E-value=1.2  Score=40.02  Aligned_cols=54  Identities=19%  Similarity=0.103  Sum_probs=43.0

Q ss_pred             CcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchH
Q 022691          115 QGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLR  189 (293)
Q Consensus       115 ~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~  189 (293)
                      .+.|+.-..+.+.                    ..-+++-.-+-..|.+|+.+|||...+.| |.|++++.-.+.
T Consensus        18 g~~i~~~~Li~l~--------------------~~~Gi~e~avRtAlsRL~~~G~L~~~~~G-Y~LT~~~~~~~~   71 (247)
T 3kfw_X           18 PAWATASELIQLT--------------------ADFGIKETTLRVALTRMVGAGDLVRSADG-YRLSDRLLARQR   71 (247)
T ss_dssp             TSCBCHHHHHHHH--------------------TTTTCCHHHHHHHHHHHHHTTSEEEETTE-EEECHHHHHHHH
T ss_pred             CCcccHHHHHHHH--------------------HHcCCChHHHHHHHHHHHHcCCeeccCCc-eeeCHHHHHHHH
Confidence            5678877777764                    12367778889999999999999988888 999999866554

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=86.42  E-value=1.9  Score=31.49  Aligned_cols=44  Identities=9%  Similarity=0.135  Sum_probs=38.3

Q ss_pred             CCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691          151 NFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN  194 (293)
Q Consensus       151 ~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~  194 (293)
                      +++.+-+-..|+.|++.||+.+..+|   .|.|++..+-+|..+|..
T Consensus        49 ~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l~~   95 (99)
T 3cuo_A           49 GLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKN   95 (99)
T ss_dssp             CCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHHH
Confidence            67888899999999999999876655   689999999999988874

>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1

Probab=85.98  E-value=0.84  Score=36.56  Aligned_cols=49  Identities=16%  Similarity=0.172  Sum_probs=45.4

Q ss_pred             CchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccCchhhh
Q 022691           40 AHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVADEQSK   88 (293)
Q Consensus        40 ~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~sDe~tk   88 (293)
                      ...+.+.+.|..+|..+..++..++...|+.+|..++-+|+..++++.+
T Consensus        35 ~~~eel~~av~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVIR   83 (117)
T 2hc5_A           35 VSYTNLAEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIR   83 (117)
T ss_dssp             CCHHHHHHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEE
Confidence            4678999999999999999999999999999999999999999998755

>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}

Probab=85.81  E-value=4  Score=31.86  Aligned_cols=74  Identities=3%  Similarity=-0.039  Sum_probs=50.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCcc
Q 022691           91 TKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWL  170 (293)
Q Consensus        91 T~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL  170 (293)
                      ..+++.+..+++.++.. ..   ..+.++..++-..                       .+++.+-+-..|++|++.||+
T Consensus         9 ~~lt~~~~~~L~~l~~l-~~---~~~~~s~~ela~~-----------------------l~is~~tv~~~l~~Le~~Gli   61 (139)
T 2x4h_A            9 SNLSRREFSYLLTIKRY-ND---SGEGAKINRIAKD-----------------------LKIAPSSVFEEVSHLEEKGLV   61 (139)
T ss_dssp             --CCHHHHHHHHHHHHH-HT---TTSCBCHHHHHHH-----------------------HTCCHHHHHHHHHHHHHTTSE
T ss_pred             hhcCHHHHHHHHHHHHH-Hh---cCCCcCHHHHHHH-----------------------hCCChHHHHHHHHHHHHCCCE
Confidence            35788888888765543 33   1344555554322                       357888889999999999999


Q ss_pred             cccCCccEEeccchhhchHhHH
Q 022691          171 CCTPDGKIGLGVRSCLDLRGWF  192 (293)
Q Consensus       171 ~~s~~G~y~Lg~RallEL~~yL  192 (293)
                      .+.. +.|.|++...-....++
T Consensus        62 ~r~~-~~~~Lt~~g~~~~~~~~   82 (139)
T 2x4h_A           62 KKKE-DGVWITNNGTRSINYLI   82 (139)
T ss_dssp             EEET-TEEEECHHHHHHHHHHH
T ss_pred             EecC-CeEEEChhHHHHHHHHH
Confidence            9866 88999998765444433

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=85.35  E-value=2.5  Score=33.01  Aligned_cols=45  Identities=11%  Similarity=0.079  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN  194 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~  194 (293)
                      -+++.+-+-..|..|.+.||+....+|   +|+|++..+.++-.++.+
T Consensus        66 l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~  113 (122)
T 1u2w_A           66 LGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALA  113 (122)
T ss_dssp             HTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHHHHHH
Confidence            368899999999999999999876666   699999999999998874

>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}

Probab=83.57  E-value=0.82  Score=40.61  Aligned_cols=40  Identities=15%  Similarity=0.196  Sum_probs=33.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchHh
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRG  190 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~~  190 (293)
                      .+++++-+-.+|..|++.||+.+..+|.|.||++. ++|..
T Consensus        48 ~gl~kstv~r~l~tL~~~G~v~~~~~~~Y~lg~~~-~~lg~   87 (260)
T 2o0y_A           48 TKLPKTTVVRLVATMCARSVLTSRADGSYSLGPEM-LRWVR   87 (260)
T ss_dssp             HCCCHHHHHHHHHHHHHTTSEEECTTSCEEECHHH-HHHHH
T ss_pred             HCcCHHHHHHHHHHHHHCCCEEECCCCeEEecHHH-HHHHH
Confidence            36889999999999999999998777799999995 44543

>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B

Probab=80.89  E-value=22  Score=30.99  Aligned_cols=107  Identities=14%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             CCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhccccc--CcEEEEeeecCCCeEEEEEEeccCchhhhcCCCCCH
Q 022691           18 RGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSC--QFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTV   95 (293)
Q Consensus        18 rg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l--~~eIr~~~~q~~g~~~y~lVN~~sDe~tklAT~yt~   95 (293)
                      .|+|+..|+..+|.+..+.+ ..+.++|...+..    |.+|  +|+|+++.   +|..+.-.++. +++          
T Consensus        93 GG~I~L~dl~~~~nraRG~~-lVSp~Dl~~A~~~----l~~Lg~~~~l~~~~---sg~~vvqs~~~-~~~----------  153 (218)
T 3cuq_B           93 GGIMSLTEVYCLVNRARGME-LLSPEDLVNACKM----LEALKLPLRLRVFD---SGVMVIELQSH-KEE----------  153 (218)
T ss_dssp             TSEEEHHHHHHHHHHTCSSS-CCCHHHHHHHHHT----TTTTTCSEEEEECT---TSBEEEEETTC-CGG----------
T ss_pred             CCeEEHHHHHHHHHHHcCCC-CCCHHHHHHHHHH----HHHcCCCEEEEEEC---CCcEEEEcCCC-chH----------
Confidence            79999999999998776642 2444555555444    4454  56666662   44333333322 222          


Q ss_pred             HHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCccccc
Q 022691           96 QQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCT  173 (293)
Q Consensus        96 ~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL~~s  173 (293)
                         .+...+++.+ .   ..|+++..++-.                       ..+.+..-|.+.|..++.+|.+.+.
T Consensus       154 ---~~~~~il~~~-~---~~g~vt~~~la~-----------------------~l~ws~~~a~e~L~~~e~~G~l~~D  201 (218)
T 3cuq_B          154 ---EMVASALETV-S---EKGSLTSEEFAK-----------------------LVGMSVLLAKERLLLAEKMGHLCRD  201 (218)
T ss_dssp             ---GGHHHHHHHH-H---HTSCBCHHHHHH-----------------------HHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             ---HHHHHHHHHH-H---HCCCcCHHHHHH-----------------------HhCCCHHHHHHHHHHHHHcCCEEEE
Confidence               2334445433 3   146777766532                       1368899999999999999999875

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=80.89  E-value=2  Score=31.78  Aligned_cols=44  Identities=9%  Similarity=0.077  Sum_probs=39.0

Q ss_pred             CCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691          151 NFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN  194 (293)
Q Consensus       151 ~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~  194 (293)
                      +++.+-+-..|+.|.+.||+....+|   +|.|++..+-++..+|.+
T Consensus        47 ~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l~~   93 (98)
T 3jth_A           47 QLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLLHS   93 (98)
T ss_dssp             TCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHHHH
Confidence            67888899999999999999877766   699999999999998874

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=80.23  E-value=1.4  Score=33.34  Aligned_cols=45  Identities=7%  Similarity=-0.107  Sum_probs=37.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccCCcc---EEeccchhhchHhHHhc
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTPDGK---IGLGVRSCLDLRGWFRN  194 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~---y~Lg~RallEL~~yL~~  194 (293)
                      -+++.+-+-..|+.|.+.||+.+..+|.   |.|++..+-++..++..
T Consensus        44 l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~~~   91 (114)
T 2oqg_A           44 LPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTLER   91 (114)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHHHH
Confidence            3688889999999999999998765564   99999998888777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	96.83
d3ctaa1	85	Ta1064 (RFK), N-terminal domain {Thermoplasma acid	85.54
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	84.99
d2isya1	63	Iron-dependent regulator IdeR {Mycobacterium tuber	84.18
d2hc5a1	109	Hypothetical protein YvyC {Bacillus subtilis [TaxI	82.06
d2ev0a1	61	Manganese transport regulator MntR {Bacillus subti	81.73
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	81.05

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.83  E-value=0.0015  Score=46.48  Aligned_cols=40  Identities=13%  Similarity=0.151  Sum_probs=34.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchHh
Q 022691          150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRG  190 (293)
Q Consensus       150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~~  190 (293)
                      .+++++-+-.+|..|++.||+.+..+|.|.||||. ++|..
T Consensus        30 ~~~~~st~~rll~tL~~~g~l~~~~~g~y~lG~~l-~~lg~   69 (75)
T d1mkma1          30 FNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKL-IEYGS   69 (75)
T ss_dssp             TTCCHHHHHHHHHHHHHTTSEEECTTSCEEECTHH-HHHHH
T ss_pred             HCcCHHHHHHHHHHHHHCCCEEECCCCCEeecHHH-HHHHH
Confidence            36889999999999999999999889999999996 45543

>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=85.54  E-value=1.1  Score=31.51  Aligned_cols=43  Identities=7%  Similarity=0.090  Sum_probs=36.2

Q ss_pred             CCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHh
Q 022691          151 NFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFR  193 (293)
Q Consensus       151 ~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~  193 (293)
                      +++++-+-.+|++|.++||..+..+|   .|.|++.+.--|+.++.
T Consensus        32 ~i~~~~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G~~~l~~~~~   77 (85)
T d3ctaa1          32 GISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFA   77 (85)
T ss_dssp             TSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCeeeecccccccceECHHHHHHHHHHHH
Confidence            67888889999999999999987776   57899988877777664

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.99  E-value=0.048  Score=33.79  Aligned_cols=31  Identities=26%  Similarity=0.766  Sum_probs=25.4

Q ss_pred             CCCCchhhhhHHHhC---CCCCCCCCCCCCCCCC
Q 022691          196 DVPFCEVCNEAVVKG---EILCPRCGLRWPNQVP  226 (293)
Q Consensus       196 ~i~~C~~Ck~iv~~g---~~~CP~C~~~W~~~~~  226 (293)
                      .+|.|-.|+..-++-   ...||.|.-+|+....
T Consensus         2 ~lP~CP~C~seytYedg~l~vCPeC~hEW~~~~~   35 (38)
T d2akla2           2 TLPPCPQCNSEYTYEDGALLVCPECAHEWSPNEA   35 (38)
T ss_dssp             CSCCCTTTCCCCCEECSSSEEETTTTEEECTTTT
T ss_pred             CCCcCCCCCCcceEcCCCEEECCcccCcCCcccc
Confidence            478999999887763   7799999999987654

>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Iron-dependent regulator IdeR
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.18  E-value=3.1  Score=27.72  Aligned_cols=62  Identities=10%  Similarity=0.074  Sum_probs=44.5

Q ss_pred             CCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCccc
Q 022691           92 KYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLC  171 (293)
Q Consensus        92 ~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL~  171 (293)
                      .+|+..=.|++.|.+..-.    .+.+...++-+.                       .+.++.-+-..+++|.+.||+.
T Consensus         2 ~ls~s~EdYL~~I~~L~~~----~~~v~~~~iA~~-----------------------L~vs~~SVt~mvkrL~~~Glv~   54 (63)
T d2isya1           2 ELVDTTEMYLRTIYDLEEE----GVTPLRARIAER-----------------------LDQSGPTVSQTVSRMERDGLLR   54 (63)
T ss_dssp             TTSSHHHHHHHHHHHHHHT----TCCCCHHHHHHH-----------------------HTCCHHHHHHHHHHHHHTTSEE
T ss_pred             CCcHHHHHHHHHHHHHHhc----CCCCcHHHHHHH-----------------------hCCCchhHHHHHHHHHHCCCEE
Confidence            4667777888888865433    345666554322                       3567778888999999999999


Q ss_pred             ccCCccEEe
Q 022691          172 CTPDGKIGL  180 (293)
Q Consensus       172 ~s~~G~y~L  180 (293)
                      ..+.+.+.|
T Consensus        55 ~~~y~~i~L   63 (63)
T d2isya1          55 VAGDRHLEL   63 (63)
T ss_dssp             ECTTSCEEE
T ss_pred             EcCCCceeC
Confidence            877787765

>d2hc5a1 d.352.1.1 (A:1-109) Hypothetical protein YvyC {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: FlaG-like
superfamily: FlaG-like
family: FlaG-like
domain: Hypothetical protein YvyC
species: Bacillus subtilis [TaxId: 1423]

Probab=82.06  E-value=0.71  Score=34.53  Aligned_cols=49  Identities=16%  Similarity=0.172  Sum_probs=45.6

Q ss_pred             CchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccCchhhh
Q 022691           40 AHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVADEQSK   88 (293)
Q Consensus        40 ~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~sDe~tk   88 (293)
                      .+...+.+.+..+|..+..++-.++...|+..|..+.-+|+..++++.+
T Consensus        35 ~s~~~l~~~v~~ln~~l~~~~~~L~F~~de~~~~~vVkVvD~~T~eVIR   83 (109)
T d2hc5a1          35 VSYTNLAEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIR   83 (109)
T ss_dssp             CCHHHHHHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEEE
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCEEEEEEECCCCeeee
Confidence            4678899999999999999999999999999999999999999998765

>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Manganese transport regulator MntR
species: Bacillus subtilis [TaxId: 1423]

Probab=81.73  E-value=2.7  Score=27.78  Aligned_cols=60  Identities=15%  Similarity=0.133  Sum_probs=39.4

Q ss_pred             CHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCccccc
Q 022691           94 TVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCT  173 (293)
Q Consensus        94 t~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL~~s  173 (293)
                      |+..-.|+|.|.+..-.    .+.++..+.-+                       ..+.++.-+-..+++|.++||+...
T Consensus         2 T~s~EdYLk~I~~l~~~----~~~v~~~~iA~-----------------------~L~vs~~SVs~mikrL~~~GlV~~~   54 (61)
T d2ev0a1           2 TPSMEDYIEQIYMLIEE----KGYARVSDIAE-----------------------ALAVHPSSVTKMVQKLDKDEYLIYE   54 (61)
T ss_dssp             CHHHHHHHHHHHHHHHH----HSSCCHHHHHH-----------------------HHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred             CccHHHHHHHHHHHHhc----CCCccHHHHHH-----------------------HhCCCchhHHHHHHHHHHCCCEEEc
Confidence            45566788888775533    34566555422                       2367788888899999999999987


Q ss_pred             CCccEEe
Q 022691          174 PDGKIGL  180 (293)
Q Consensus       174 ~~G~y~L  180 (293)
                      +-|.+.|
T Consensus        55 ~Y~~i~L   61 (61)
T d2ev0a1          55 KYRGLVL   61 (61)
T ss_dssp             ---CCEE
T ss_pred             cCCCeeC
Confidence            7776654

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.05  E-value=1.1  Score=32.17  Aligned_cols=30  Identities=30%  Similarity=0.690  Sum_probs=21.7

Q ss_pred             CCCCchhhhhHHHh-CCCCCCCCCCCCCCCC
Q 022691          196 DVPFCEVCNEAVVK-GEILCPRCGLRWPNQV  225 (293)
Q Consensus       196 ~i~~C~~Ck~iv~~-g~~~CP~C~~~W~~~~  225 (293)
                      ..|.|.-|.+-=.+ |...||.|++.+....
T Consensus        42 ~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~k   72 (93)
T d1weoa_          42 GFPACRPCYEYERREGTQNCPQCKTRYKRLR   72 (93)
T ss_dssp             CCCCCHHHHHHHHHTSCSSCTTTCCCCCCCT
T ss_pred             CCccchHHHHHHHhccCccCcccCChhhhhc
Confidence            45667777666443 5889999999987643