Citrus Sinensis ID: 022698
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 293 | 2.2.26 [Sep-21-2011] | |||||||
| Q74LY0 | 244 | Demethylmenaquinone methy | yes | no | 0.440 | 0.528 | 0.312 | 4e-10 | |
| B2IUM7 | 230 | Demethylmenaquinone methy | yes | no | 0.416 | 0.530 | 0.350 | 3e-08 | |
| Q3ED65 | 261 | 2-phytyl-1,4-beta-naphtho | no | no | 0.351 | 0.394 | 0.365 | 1e-07 | |
| C5BMZ8 | 570 | Biotin biosynthesis bifun | yes | no | 0.433 | 0.222 | 0.293 | 1e-07 | |
| Q3MD91 | 229 | Demethylmenaquinone methy | yes | no | 0.447 | 0.572 | 0.315 | 3e-07 | |
| Q2YY85 | 241 | Demethylmenaquinone methy | yes | no | 0.324 | 0.394 | 0.382 | 5e-07 | |
| Q8CSH9 | 241 | Demethylmenaquinone methy | yes | no | 0.331 | 0.402 | 0.367 | 6e-07 | |
| Q5HP74 | 241 | Demethylmenaquinone methy | yes | no | 0.331 | 0.402 | 0.367 | 6e-07 | |
| Q73AY2 | 237 | Demethylmenaquinone methy | yes | no | 0.327 | 0.405 | 0.377 | 8e-07 | |
| Q6GGU0 | 241 | Demethylmenaquinone methy | yes | no | 0.324 | 0.394 | 0.382 | 1e-06 |
| >sp|Q74LY0|UBIE_LACJO Demethylmenaquinone methyltransferase OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=ubiE PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 28/157 (17%)
Query: 92 FYSAVPLHYDMAQRMV--GSVNDWSTVKT----------ALDIGCGRGILLNAVATQFKK 139
++ V HYD ++ G+ N W ALD+ CG G L A+A K+
Sbjct: 19 LFTRVAPHYDQMNNLISLGTQNGWRKKFFKKLKVKAGDFALDLCCGTGDLTIALA---KQ 75
Query: 140 TGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFH 199
G G V+GLD ++ + + + +Q+ + ++GD LP+ D FD+V
Sbjct: 76 VGPSGNVIGLDFNQKMLDLADKKIRGQNLQKEIQLKQGDAMHLPYTDQSFDIV------- 128
Query: 200 TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG-VGVV 235
T+G +G R V A + VL E+ RVLKP G VG++
Sbjct: 129 TIG--FGLRNVPDADQ---VLKEIYRVLKPDGKVGIL 160
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) (taxid: 257314) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 6EC: 3 |
| >sp|B2IUM7|UBIE_NOSP7 Demethylmenaquinone methyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 73/151 (48%), Gaps = 29/151 (19%)
Query: 113 WSTVK---TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ 169
WS K TALD+ CG G L +A ++ G+ G V G+D + + L TAK +
Sbjct: 38 WSAAKSGNTALDLCCGSGDLALRLA---RRVGATGYVYGVDF----SCNLLETAKERSQK 90
Query: 170 EY----VTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVR 225
+Y + E DV +LPF DN FD T+G YG R V+ + R L E+ R
Sbjct: 91 QYPQPAIAWVEADVLNLPFDDNQFDAA-------TMG--YGLRNVK---DIPRSLQELHR 138
Query: 226 VLKPGGVGVVWDLLHVPE--YVRRLQELKME 254
VLKPG + D H P +R Q+L +
Sbjct: 139 VLKPGAKAAILD-FHRPSNPQLRAFQQLYLN 168
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q3ED65|MENG_ARATH 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=MENG PE=1 SV=2 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 20/123 (16%)
Query: 113 WSTVKTA---LDIGCGRGILLNAVATQFKKTGSLGRVVGLD--CKKRTTLSTLRTAKMEG 167
WS K LD+ CG G L ++ +K GS G+V+GLD ++ +T ++ K
Sbjct: 68 WSGAKKGDYVLDLCCGSGDLAFLLS---EKVGSTGKVMGLDFSSEQLAVAATRQSLKARS 124
Query: 168 VQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVL 227
+ + EGD LPF D FD V T+G YG R V +R+R + EM RVL
Sbjct: 125 CYKCIEWIEGDAIDLPFDDCEFDAV-------TMG--YGLRNV---VDRLRAMKEMYRVL 172
Query: 228 KPG 230
KPG
Sbjct: 173 KPG 175
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Involved in the biosynthesis of phylloquinone (vitamin K1). Methyltransferase required for the conversion of 2-phytyl-1,4-beta-naphthoquinone to phylloquinone. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 2 |
| >sp|C5BMZ8|BIOHC_TERTT Biotin biosynthesis bifunctional protein BioHC OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=bioC PE=3 SV=1 | Back alignment and function description |
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Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 23/150 (15%)
Query: 93 YSAVPLHYD----MAQRMVGSVNDWS------TVKTALDIGCGRGILLNAVATQFKK-TG 141
+S+ YD + +R+V S+ ++S +T LD+GCG G + + QF + T
Sbjct: 303 FSSAAQEYDTLARLQKRVVDSLVEFSLGTGGSVGQTLLDLGCGTGYCIERLLQQFPEITQ 362
Query: 142 SLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTV 201
GR+ LD + + GV E + GD+ SLPF D FD +S+
Sbjct: 363 PEGRIHALDIAEGMLDRAQQKFDELGVAEQINWHLGDMESLPFVDESFDGCISSL----- 417
Query: 202 GKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
TV+ + +++ EM R LKPGG
Sbjct: 418 -------TVQWSENPLQLFSEMYRALKPGG 440
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The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters. Teredinibacter turnerae (strain ATCC 39867 / T7901) (taxid: 377629) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 9 EC: 7 |
| >sp|Q3MD91|UBIE_ANAVT Demethylmenaquinone methyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
Query: 113 WSTVK---TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ 169
W+ K T LD+ CG G L +A ++ GS G+V G+D + + A+ + Q
Sbjct: 38 WTGAKPGDTCLDLCCGSGDLALRLA---RRVGSTGQVYGVDFSANLLETAKQRAQAQYPQ 94
Query: 170 EYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKP 229
+++ E +V LPF DN FD T+G YG R V + R L E+ RVLKP
Sbjct: 95 PHISWVEANVLDLPFEDNQFDAA-------TMG--YGLRNV---TDIPRSLQELRRVLKP 142
Query: 230 GGVGVVWDLLHVP--EYVRRLQELKMEDIRVS 259
+ D H P + R Q+ ++ I V
Sbjct: 143 NAKAAILD-FHRPNNQQFRTFQQWYLDSIVVP 173
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q2YY85|UBIE_STAAB Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 20/115 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG G A++ K G G V G+D + + +TA ME V+ G
Sbjct: 53 ALDVCCGTGDWTIALS---KAVGPTGEVTGIDFSENMLEVGKEKTASMENVK----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPFGDN FD V T+G +G R V + + L EM RVLKPGG+
Sbjct: 106 DAMELPFGDNSFDYV-------TIG--FGLRNV---PDYLVALKEMNRVLKPGGM 148
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q8CSH9|UBIE_STAES Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 20/117 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG A++ + GS G+V GLD + + +TA +E +Q G
Sbjct: 53 ALDVCCGTADWTIALS---EAVGSKGQVTGLDFSENMLEVGKQKTASLENIQ----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
D +LPF DN FD V T+G +G R V + + L EM RVLKPGG+ V
Sbjct: 106 DAMNLPFDDNSFDYV-------TIG--FGLRNV---PDYLSALKEMHRVLKPGGMVV 150
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q5HP74|UBIE_STAEQ Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 20/117 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG A++ + GS G+V GLD + + +TA +E +Q G
Sbjct: 53 ALDVCCGTADWTIALS---EAVGSKGQVTGLDFSENMLEVGKQKTASLENIQ----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
D +LPF DN FD V T+G +G R V + + L EM RVLKPGG+ V
Sbjct: 106 DAMNLPFDDNSFDYV-------TIG--FGLRNV---PDYLSALKEMHRVLKPGGMVV 150
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q73AY2|UBIE_BACC1 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain ATCC 10987) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 59/114 (51%), Gaps = 18/114 (15%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREG 177
ALD+ CG A+A + G G+VVGLD + + ++ K+E +Q + V G
Sbjct: 51 ALDVCCGTADWTIALA---EAVGEQGKVVGLDFSE--NMLSVGKQKVEALQLKQVELLHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ LPF DN FD V T+G +G R V + M VL EM RV+KPGG
Sbjct: 106 NAMELPFEDNTFDYV-------TIG--FGLRNV---PDYMHVLKEMTRVVKPGG 147
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Bacillus cereus (strain ATCC 10987) (taxid: 222523) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q6GGU0|UBIE_STAAR Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 20/115 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG G A++ K GS G V G+D + + +TA ME V+ G
Sbjct: 53 ALDVCCGTGDWTIALS---KAVGSTGEVTGIDFSENMLEVGKEKTASMENVK----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPF DN FD V T+G +G R V + + L EM RVLKPGG+
Sbjct: 106 DAMELPFEDNSFDYV-------TIG--FGLRNV---PDYLVALKEMNRVLKPGGM 148
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus aureus (strain MRSA252) (taxid: 282458) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 293 | ||||||
| 224128428 | 300 | predicted protein [Populus trichocarpa] | 0.972 | 0.95 | 0.802 | 1e-133 | |
| 255569571 | 314 | S-adenosylmethionine-dependent methyltra | 0.993 | 0.926 | 0.787 | 1e-132 | |
| 224117258 | 300 | predicted protein [Populus trichocarpa] | 0.976 | 0.953 | 0.776 | 1e-129 | |
| 15239632 | 292 | S-adenosyl-L-methionine-dependent methyl | 0.989 | 0.993 | 0.769 | 1e-129 | |
| 297792889 | 292 | predicted protein [Arabidopsis lyrata su | 0.989 | 0.993 | 0.766 | 1e-128 | |
| 297834420 | 288 | hypothetical protein ARALYDRAFT_479001 [ | 0.962 | 0.979 | 0.783 | 1e-122 | |
| 449464780 | 291 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 0.982 | 0.758 | 1e-120 | |
| 225461349 | 291 | PREDICTED: uncharacterized protein LOC10 | 0.959 | 0.965 | 0.777 | 1e-119 | |
| 18400797 | 288 | methyltransferase [Arabidopsis thaliana] | 0.969 | 0.986 | 0.785 | 1e-118 | |
| 356542258 | 295 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.979 | 0.733 | 1e-114 |
| >gi|224128428|ref|XP_002329159.1| predicted protein [Populus trichocarpa] gi|222869828|gb|EEF06959.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/294 (80%), Positives = 251/294 (85%), Gaps = 9/294 (3%)
Query: 8 ATTTREWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTL---- 63
+T +R+W QIY IYG+EQWQTL+FL AI FSI SILFL+YF+P+C F +
Sbjct: 6 STNSRDWTQIYKIYGMEQWQTLLFLTFQAILFSILSILFLLYFQPICQFLDTLFIFTPTS 65
Query: 64 -----EAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKT 118
AARFAAGF+G V ALS+VCLFFAAGNFFYSAV LHY+MAQR+V VNDWSTVK
Sbjct: 66 STGGGSAARFAAGFTGCVTALSAVCLFFAAGNFFYSAVGLHYEMAQRIVSCVNDWSTVKV 125
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178
ALDIGCGRGILLNAVATQ KKTGS GRVVGLD KRTTLSTLRTA +EGV EYVT REGD
Sbjct: 126 ALDIGCGRGILLNAVATQLKKTGSSGRVVGLDRSKRTTLSTLRTANIEGVGEYVTCREGD 185
Query: 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238
VRSLPFGDNYFDVVVSA F HTVGKEYGHRTVEAAAERMRVLGEMVRVLKP GVGV+WDL
Sbjct: 186 VRSLPFGDNYFDVVVSATFVHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPCGVGVLWDL 245
Query: 239 LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAGPGEVRLDWR 292
LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQH GPGEVRLDWR
Sbjct: 246 LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQHMLGPGEVRLDWR 299
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255569571|ref|XP_002525751.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223534901|gb|EEF36587.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/301 (78%), Positives = 252/301 (83%), Gaps = 10/301 (3%)
Query: 3 SKTAAATTTREWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYL- 61
+ AT R+W QIY IYG++QWQTLIFLLCHAIFF+I SILFL YF+P C + +
Sbjct: 14 NNKTTATNHRDWTQIYTIYGMDQWQTLIFLLCHAIFFTILSILFLYYFDPFCELLETCVL 73
Query: 62 -------TLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWS 114
T ARFAAGF+G V ALS+VCLFFAAGNFFYSAV LH++MAQRMV VNDWS
Sbjct: 74 HFATTTSTAGVARFAAGFTGCVTALSAVCLFFAAGNFFYSAVALHHEMAQRMVSYVNDWS 133
Query: 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174
VK ALDIGCGRGILLNAVATQ KKTGS GRVVGLD KRTTLSTLRTA MEGV EYVT
Sbjct: 134 NVKLALDIGCGRGILLNAVATQLKKTGSCGRVVGLDRSKRTTLSTLRTANMEGVGEYVTC 193
Query: 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
REGDVRSLPFGDNYFDVVVSA FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG+GV
Sbjct: 194 REGDVRSLPFGDNYFDVVVSAVFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGMGV 253
Query: 235 VWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQH--YAGPGEVRLDWR 292
VWD++HVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP QH G EVRLDWR
Sbjct: 254 VWDIVHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPDQHVLVGGLSEVRLDWR 313
Query: 293 C 293
C
Sbjct: 314 C 314
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117258|ref|XP_002317522.1| predicted protein [Populus trichocarpa] gi|222860587|gb|EEE98134.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/295 (77%), Positives = 248/295 (84%), Gaps = 9/295 (3%)
Query: 8 ATTTREWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTL---- 63
+T +R+W QIY +YG+EQWQTL+FL+ A FSI SILFL+Y++P+C F ++ L
Sbjct: 6 STNSRDWTQIYTVYGMEQWQTLLFLVFQATLFSIMSILFLLYYQPICQFLDTFFLLTATS 65
Query: 64 -----EAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKT 118
AARFAAGF G V ALS+VCLFFAAGNFFYS+V L Y+MAQR+V VNDWS VK
Sbjct: 66 STGGGSAARFAAGFIGCVTALSAVCLFFAAGNFFYSSVGLRYEMAQRIVSCVNDWSNVKV 125
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178
ALDIGCGRGILLNAVATQ KKTGS GRVVGLD K TTLSTLRTA +EGV EYVT REGD
Sbjct: 126 ALDIGCGRGILLNAVATQLKKTGSSGRVVGLDRSKGTTLSTLRTANVEGVGEYVTCREGD 185
Query: 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238
VRSLPFGDNYFDVVVSA F HTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL
Sbjct: 186 VRSLPFGDNYFDVVVSATFVHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 245
Query: 239 LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAGPGEVRLDWRC 293
LHVPEYVRRLQELKMEDI VSERVTAFM+SSHIVSFRKP QH GP EVRLDWRC
Sbjct: 246 LHVPEYVRRLQELKMEDITVSERVTAFMMSSHIVSFRKPIQHILGPCEVRLDWRC 300
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239632|ref|NP_200251.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|8885583|dbj|BAA97513.1| unnamed protein product [Arabidopsis thaliana] gi|51969400|dbj|BAD43392.1| putative protein [Arabidopsis thaliana] gi|124301150|gb|ABN04827.1| At5g54400 [Arabidopsis thaliana] gi|332009109|gb|AED96492.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/295 (76%), Positives = 251/295 (85%), Gaps = 5/295 (1%)
Query: 1 MGSKTAAATTTREWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSY 60
MG T TR+W QIYAIYG+EQ TLIFL+ +AI FSI S +F++YF P+C FF S+
Sbjct: 1 MGKTTNG---TRDWAQIYAIYGIEQKHTLIFLILNAIAFSILSTVFVIYFNPICVFFQSF 57
Query: 61 L--TLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKT 118
L AARF+AGF GAV ALS+VCLFFAA NFFYSAVPL Y+MAQRMVGSV DWS+VKT
Sbjct: 58 LFSNAAAARFSAGFFGAVTALSAVCLFFAAANFFYSAVPLRYEMAQRMVGSVGDWSSVKT 117
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178
ALD+GCGRGILLNAVATQ KKTGS GRVVGLD TTLSTLRTA +EGVQEYVT REGD
Sbjct: 118 ALDLGCGRGILLNAVATQLKKTGSSGRVVGLDRSMTTTLSTLRTAHIEGVQEYVTCREGD 177
Query: 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238
VR LPF DNYFDVVVSA F HT+GKEYG +TVEAAAERMRVLGE VRVLKPGGVGVVWDL
Sbjct: 178 VRRLPFSDNYFDVVVSAVFLHTIGKEYGQKTVEAAAERMRVLGEAVRVLKPGGVGVVWDL 237
Query: 239 LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAGPGEVRLDWRC 293
+HVPEYVRRLQEL+ME+IRVS+RVTAFMV SH+VSF+KPSQH+ G GEVRLDWRC
Sbjct: 238 VHVPEYVRRLQELRMEEIRVSKRVTAFMVKSHMVSFKKPSQHFVGSGEVRLDWRC 292
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297792889|ref|XP_002864329.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297310164|gb|EFH40588.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/295 (76%), Positives = 250/295 (84%), Gaps = 5/295 (1%)
Query: 1 MGSKTAAATTTREWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSY 60
MG T TR+W QIYAIYG+EQ TLIFL+ +AI FS+ S +F +YF P+C FF S+
Sbjct: 1 MGKTTNG---TRDWAQIYAIYGIEQKHTLIFLIINAIAFSVLSTVFFIYFNPICVFFQSF 57
Query: 61 L--TLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKT 118
L AARF+AGF GAV A+S+VCLFFAA NFFYSAVPL Y+MAQRMVGSV DWS+VKT
Sbjct: 58 LFSNAAAARFSAGFFGAVTAISAVCLFFAAANFFYSAVPLRYEMAQRMVGSVGDWSSVKT 117
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178
ALD+GCGRGILLNAVATQ KKTGS GRVVGLD TTLSTLRTA +EGVQEYVT REGD
Sbjct: 118 ALDLGCGRGILLNAVATQLKKTGSSGRVVGLDRSMSTTLSTLRTAHIEGVQEYVTCREGD 177
Query: 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238
VR LPF DNYFDVVVSA F HTVGKEYG +TVEAAAERMRVLGE VRVLKPGGVGVVWDL
Sbjct: 178 VRRLPFSDNYFDVVVSAVFLHTVGKEYGQKTVEAAAERMRVLGEAVRVLKPGGVGVVWDL 237
Query: 239 LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAGPGEVRLDWRC 293
+HVPEYVRRLQEL+ME+IRVS+RVTAFMV SH+VSF+KPSQH+ G GEVRLDWRC
Sbjct: 238 VHVPEYVRRLQELRMEEIRVSKRVTAFMVKSHMVSFKKPSQHFVGSGEVRLDWRC 292
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834420|ref|XP_002885092.1| hypothetical protein ARALYDRAFT_479001 [Arabidopsis lyrata subsp. lyrata] gi|297330932|gb|EFH61351.1| hypothetical protein ARALYDRAFT_479001 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/282 (78%), Positives = 246/282 (87%)
Query: 11 TREWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAA 70
R+W QIYAIYG+EQWQTL+FLL HA FFS+ S+LFL+YF+ +CFF S+ AAR AA
Sbjct: 7 NRDWTQIYAIYGIEQWQTLVFLLFHAFFFSLLSVLFLIYFDQICFFLDSFFLSGAARLAA 66
Query: 71 GFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILL 130
GF+GAV ALS+VCL FAA NF YS VPL Y+MAQRMV SV DWS VKTALD+GCGRGILL
Sbjct: 67 GFTGAVTALSAVCLLFAAANFVYSDVPLQYEMAQRMVSSVGDWSCVKTALDLGCGRGILL 126
Query: 131 NAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFD 190
NAVATQ KKTGS GRVVGLD KRTTLSTLRTAK+EGVQEYVT REGDV++LPFGDNYFD
Sbjct: 127 NAVATQLKKTGSSGRVVGLDRSKRTTLSTLRTAKLEGVQEYVTCREGDVKTLPFGDNYFD 186
Query: 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQE 250
VVVS+ F HTVGKE+G ++VEAAAERMRVLGE+VRV+KPGG+ VVWDLLHVPEYVRRLQE
Sbjct: 187 VVVSSVFVHTVGKEHGQKSVEAAAERMRVLGEIVRVVKPGGLCVVWDLLHVPEYVRRLQE 246
Query: 251 LKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAGPGEVRLDWR 292
LKME+IRVSERVTAFM SHIVSFRKPS+ AGP EVRLDWR
Sbjct: 247 LKMENIRVSERVTAFMAGSHIVSFRKPSELVAGPREVRLDWR 288
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464780|ref|XP_004150107.1| PREDICTED: uncharacterized protein LOC101216350 [Cucumis sativus] gi|449476731|ref|XP_004154818.1| PREDICTED: uncharacterized protein LOC101230559 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/286 (75%), Positives = 244/286 (85%)
Query: 8 ATTTREWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAAR 67
AT++R+W QIYAIYGV+QWQT++FLL HA+FF+ SI +L YFE +C FF + +AR
Sbjct: 6 ATSSRDWNQIYAIYGVDQWQTIVFLLLHALFFTALSIFYLSYFESICSFFELLFSGGSAR 65
Query: 68 FAAGFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRG 127
FAAGF+G V A+S+ CLFFAA N FYS++PLHY+MA RMV +V+DWSTVK ALD+GCGRG
Sbjct: 66 FAAGFTGCVTAISAFCLFFAAANIFYSSLPLHYEMALRMVNAVSDWSTVKHALDLGCGRG 125
Query: 128 ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDN 187
ILLNAVATQ KK GS GRVVGLD KRTTL+TLRTAKMEGV EYVT REGDVR LPFGDN
Sbjct: 126 ILLNAVATQLKKEGSSGRVVGLDRSKRTTLATLRTAKMEGVGEYVTCREGDVRRLPFGDN 185
Query: 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRR 247
YFDVVVS F HTVGKE+G RT EAAAER+RV+GE+VRVLKPGG GVVWDLLHVPEYVRR
Sbjct: 186 YFDVVVSGVFVHTVGKEHGARTAEAAAERIRVVGELVRVLKPGGTGVVWDLLHVPEYVRR 245
Query: 248 LQELKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAGPGEVRLDWRC 293
LQELKMEDIRVSE VTAFMVSSHIVSF KP H+ G GEVRLDWRC
Sbjct: 246 LQELKMEDIRVSEGVTAFMVSSHIVSFTKPRHHFVGSGEVRLDWRC 291
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225461349|ref|XP_002284635.1| PREDICTED: uncharacterized protein LOC100264154 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/283 (77%), Positives = 246/283 (86%), Gaps = 2/283 (0%)
Query: 12 REWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSY-LTLEAARFAA 70
R+W QIYAIYG+E+ QTL+FLL HAIFFS SILFL+YF P+C+FF S L AARFAA
Sbjct: 6 RDWTQIYAIYGMEEGQTLVFLLIHAIFFSFLSILFLLYFNPICYFFGSLALPAGAARFAA 65
Query: 71 GFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILL 130
GF+G+V A+S+VCLFFAAGN FYS+V LH+DMAQRMV +VNDWSTVK ALD+GCGRGILL
Sbjct: 66 GFTGSVTAISAVCLFFAAGNMFYSSVGLHWDMAQRMVSAVNDWSTVKYALDVGCGRGILL 125
Query: 131 NAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFD 190
NAVA Q KK GS GRVVGLD +++TT+STLRTA +EGVQEYVT REGD R LPF DNYFD
Sbjct: 126 NAVAMQLKKEGSSGRVVGLD-RRKTTVSTLRTAGIEGVQEYVTCREGDARRLPFSDNYFD 184
Query: 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQE 250
VVVSA F H VGKE+G RT AAAERMRVLGE+VRVLKPGGVGVVWDL+HVPEYV+RLQE
Sbjct: 185 VVVSAVFVHRVGKEFGQRTAAAAAERMRVLGEVVRVLKPGGVGVVWDLVHVPEYVQRLQE 244
Query: 251 LKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAGPGEVRLDWRC 293
L+MEDIRVSERVTAFMVSSHIVSFRKP+ GPGEVRLDWRC
Sbjct: 245 LRMEDIRVSERVTAFMVSSHIVSFRKPNHLLLGPGEVRLDWRC 287
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18400797|ref|NP_566517.1| methyltransferase [Arabidopsis thaliana] gi|30683646|ref|NP_850590.1| methyltransferase [Arabidopsis thaliana] gi|7021738|gb|AAF35419.1| unknown protein [Arabidopsis thaliana] gi|15795118|dbj|BAB02382.1| unnamed protein product [Arabidopsis thaliana] gi|21553605|gb|AAM62698.1| unknown [Arabidopsis thaliana] gi|23306412|gb|AAN17433.1| expressed protein [Arabidopsis thaliana] gi|25083502|gb|AAN72088.1| expressed protein [Arabidopsis thaliana] gi|332642166|gb|AEE75687.1| methyltransferase [Arabidopsis thaliana] gi|332642167|gb|AEE75688.1| methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/284 (78%), Positives = 247/284 (86%)
Query: 9 TTTREWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARF 68
T R+W QIYAIYG+EQWQTL+FLL HA FFS+ S+LFL+YF+ +CFF S+ AAR
Sbjct: 5 TGNRDWTQIYAIYGIEQWQTLVFLLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGAARL 64
Query: 69 AAGFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGI 128
AAGF+GAV ALS+VCL FAA NF YS VPL Y+MAQRMV SV DWS VKTALD+GCGRGI
Sbjct: 65 AAGFTGAVTALSAVCLLFAAANFVYSDVPLQYEMAQRMVSSVGDWSCVKTALDLGCGRGI 124
Query: 129 LLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNY 188
LLNAVATQ KKTGS GRVVGLD KRTTLSTLRTAK+EGVQEYVT REGDV++LPFGDNY
Sbjct: 125 LLNAVATQLKKTGSSGRVVGLDRSKRTTLSTLRTAKLEGVQEYVTCREGDVKTLPFGDNY 184
Query: 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRL 248
FDVVVS+ F HTVGKE+G ++VEAAAERMRVLGE+VRV+KPGG+ VVWDLLHVPEYVRRL
Sbjct: 185 FDVVVSSVFVHTVGKEHGQKSVEAAAERMRVLGEIVRVVKPGGLCVVWDLLHVPEYVRRL 244
Query: 249 QELKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAGPGEVRLDWR 292
QELKMEDIRVSERVTAFM SHIVSFRKPS+ AGP EVRLDWR
Sbjct: 245 QELKMEDIRVSERVTAFMAGSHIVSFRKPSELVAGPREVRLDWR 288
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356542258|ref|XP_003539586.1| PREDICTED: uncharacterized protein LOC100804520 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/296 (73%), Positives = 243/296 (82%), Gaps = 7/296 (2%)
Query: 1 MGSKTAAATTTREWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSY 60
MG T R+W Q+YAIYG+EQWQTLIFLLC A+ FS+ S+L+L+YF+ VC FF
Sbjct: 1 MGKST---NNNRDWTQMYAIYGMEQWQTLIFLLCQAMLFSVLSVLYLLYFDLVCNFFERI 57
Query: 61 LTLEA---ARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVK 117
+ ARFAAG +G+V ALS++CLFFAA NFFYS+VPLH+DMAQR+V +V+DWS+VK
Sbjct: 58 FSGAGGGTARFAAGITGSVTALSALCLFFAAANFFYSSVPLHFDMAQRIVSAVHDWSSVK 117
Query: 118 TALDIGC-GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
ALD+GC GRGILLNAVATQ KK GS GRVVGLD KRTTLSTLR AKMEGV EYVT RE
Sbjct: 118 LALDLGCCGRGILLNAVATQLKKEGSSGRVVGLDRTKRTTLSTLRAAKMEGVGEYVTCRE 177
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236
GD R LPF DNYFDVVVS F HTVG+EYG RT EAAAERMR + E+VRV+KPGGV VVW
Sbjct: 178 GDARRLPFPDNYFDVVVSGVFVHTVGREYGARTAEAAAERMRAVAELVRVMKPGGVAVVW 237
Query: 237 DLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAGPGEVRLDWR 292
DLLHVPEYV RLQELKMED+RVSERVTAFMVSSHIVSFRKPSQH GP EVRLDWR
Sbjct: 238 DLLHVPEYVLRLQELKMEDVRVSERVTAFMVSSHIVSFRKPSQHVHGPAEVRLDWR 293
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 293 | ||||||
| TAIR|locus:2147289 | 292 | AT5G54400 [Arabidopsis thalian | 0.965 | 0.969 | 0.785 | 1.6e-118 | |
| TAIR|locus:2090111 | 288 | AT3G15530 [Arabidopsis thalian | 0.969 | 0.986 | 0.785 | 2.6e-118 | |
| TAIR|locus:2028050 | 261 | MENG [Arabidopsis thaliana (ta | 0.351 | 0.394 | 0.365 | 4e-07 | |
| TIGR_CMR|BA_1534 | 237 | BA_1534 "2-heptaprenyl-1,4-nap | 0.327 | 0.405 | 0.377 | 7.9e-06 | |
| TIGR_CMR|CHY_0555 | 204 | CHY_0555 "methyltransferase, U | 0.426 | 0.612 | 0.290 | 0.00016 | |
| UNIPROTKB|Q3AB55 | 244 | menG "Demethylmenaquinone meth | 0.416 | 0.5 | 0.291 | 0.00017 | |
| TIGR_CMR|CHY_1809 | 244 | CHY_1809 "2-heptaprenyl-1,4-na | 0.416 | 0.5 | 0.291 | 0.00017 | |
| ASPGD|ASPL0000066575 | 313 | AN7175 [Emericella nidulans (t | 0.331 | 0.309 | 0.318 | 0.00068 |
| TAIR|locus:2147289 AT5G54400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
Identities = 224/285 (78%), Positives = 248/285 (87%)
Query: 11 TREWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYL--TLEAARF 68
TR+W QIYAIYG+EQ TLIFL+ +AI FSI S +F++YF P+C FF S+L AARF
Sbjct: 8 TRDWAQIYAIYGIEQKHTLIFLILNAIAFSILSTVFVIYFNPICVFFQSFLFSNAAAARF 67
Query: 69 AAGFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGI 128
+AGF GAV ALS+VCLFFAA NFFYSAVPL Y+MAQRMVGSV DWS+VKTALD+GCGRGI
Sbjct: 68 SAGFFGAVTALSAVCLFFAAANFFYSAVPLRYEMAQRMVGSVGDWSSVKTALDLGCGRGI 127
Query: 129 LLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNY 188
LLNAVATQ KKTGS GRVVGLD TTLSTLRTA +EGVQEYVT REGDVR LPF DNY
Sbjct: 128 LLNAVATQLKKTGSSGRVVGLDRSMTTTLSTLRTAHIEGVQEYVTCREGDVRRLPFSDNY 187
Query: 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRL 248
FDVVVSA F HT+GKEYG +TVEAAAERMRVLGE VRVLKPGGVGVVWDL+HVPEYVRRL
Sbjct: 188 FDVVVSAVFLHTIGKEYGQKTVEAAAERMRVLGEAVRVLKPGGVGVVWDLVHVPEYVRRL 247
Query: 249 QELKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAGPGEVRLDWRC 293
QEL+ME+IRVS+RVTAFMV SH+VSF+KPSQH+ G GEVRLDWRC
Sbjct: 248 QELRMEEIRVSKRVTAFMVKSHMVSFKKPSQHFVGSGEVRLDWRC 292
|
|
| TAIR|locus:2090111 AT3G15530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
Identities = 223/284 (78%), Positives = 247/284 (86%)
Query: 9 TTTREWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARF 68
T R+W QIYAIYG+EQWQTL+FLL HA FFS+ S+LFL+YF+ +CFF S+ AAR
Sbjct: 5 TGNRDWTQIYAIYGIEQWQTLVFLLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGAARL 64
Query: 69 AAGFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGI 128
AAGF+GAV ALS+VCL FAA NF YS VPL Y+MAQRMV SV DWS VKTALD+GCGRGI
Sbjct: 65 AAGFTGAVTALSAVCLLFAAANFVYSDVPLQYEMAQRMVSSVGDWSCVKTALDLGCGRGI 124
Query: 129 LLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNY 188
LLNAVATQ KKTGS GRVVGLD KRTTLSTLRTAK+EGVQEYVT REGDV++LPFGDNY
Sbjct: 125 LLNAVATQLKKTGSSGRVVGLDRSKRTTLSTLRTAKLEGVQEYVTCREGDVKTLPFGDNY 184
Query: 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRL 248
FDVVVS+ F HTVGKE+G ++VEAAAERMRVLGE+VRV+KPGG+ VVWDLLHVPEYVRRL
Sbjct: 185 FDVVVSSVFVHTVGKEHGQKSVEAAAERMRVLGEIVRVVKPGGLCVVWDLLHVPEYVRRL 244
Query: 249 QELKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAGPGEVRLDWR 292
QELKMEDIRVSERVTAFM SHIVSFRKPS+ AGP EVRLDWR
Sbjct: 245 QELKMEDIRVSERVTAFMAGSHIVSFRKPSELVAGPREVRLDWR 288
|
|
| TAIR|locus:2028050 MENG [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 138 (53.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 45/123 (36%), Positives = 62/123 (50%)
Query: 113 WSTVKTA---LDIGCGRGILLNAVATQFKKTGSLGRVVGLD--CKKRTTLSTLRTAKMEG 167
WS K LD+ CG G L ++ +K GS G+V+GLD ++ +T ++ K
Sbjct: 68 WSGAKKGDYVLDLCCGSGDLAFLLS---EKVGSTGKVMGLDFSSEQLAVAATRQSLKARS 124
Query: 168 VQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVL 227
+ + EGD LPF D FD V T+G YG R V +R+R + EM RVL
Sbjct: 125 CYKCIEWIEGDAIDLPFDDCEFDAV-------TMG--YGLRNV---VDRLRAMKEMYRVL 172
Query: 228 KPG 230
KPG
Sbjct: 173 KPG 175
|
|
| TIGR_CMR|BA_1534 BA_1534 "2-heptaprenyl-1,4-naphthoquinone methyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 43/114 (37%), Positives = 58/114 (50%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREG 177
ALD+ CG A+A G G+VVGLD + + ++ K+E +Q + V G
Sbjct: 51 ALDVCCGTADWTIALAGA---VGEQGKVVGLDFSEN--MLSVGKQKVEALQLKQVELLHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ LPF DN FD V T+G +G R V + M VL EM RV+KPGG
Sbjct: 106 NAMELPFEDNTFDYV-------TIG--FGLRNVP---DYMHVLKEMTRVVKPGG 147
|
|
| TIGR_CMR|CHY_0555 CHY_0555 "methyltransferase, UbiE/COQ5 family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 113 (44.8 bits), Expect = 0.00016, P = 0.00016
Identities = 43/148 (29%), Positives = 71/148 (47%)
Query: 107 VGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166
VGS+ V LD+GCG G + + + G VGLD ++ + A+ +
Sbjct: 25 VGSLKPGMIV---LDLGCGNG----GETIRAAQIVAPGFAVGLDITEKLLEKGQKKAREQ 77
Query: 167 GVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRV 226
GV+ V + G++ +LPF FDVV+S + H A ++++V E+ RV
Sbjct: 78 GVKNVVFIK-GEIENLPFVGESFDVVISNCALN-------H-----ARDKLKVYREIYRV 124
Query: 227 LKPGGVGVVWD---LLHVPEYVRRLQEL 251
LK G +V D L+ +P ++ +EL
Sbjct: 125 LKEDGYFIVSDPVSLVELPPEIKNNEEL 152
|
|
| UNIPROTKB|Q3AB55 menG "Demethylmenaquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 115 (45.5 bits), Expect = 0.00017, P = 0.00017
Identities = 40/137 (29%), Positives = 61/137 (44%)
Query: 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA 163
+R V+ S LD+ CG G+ +A + G G VVGLD + +
Sbjct: 40 RRFAVKVSGLSAGGRGLDVACGTGMFAIELA---RVVGPTGEVVGLDFNENMLEVARKNI 96
Query: 164 KMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEM 223
+++ + G+ +LPF DN FDV T+G + R V + + + EM
Sbjct: 97 ARYSMEKIIKLVHGNALALPFPDNSFDVA-------TIG--FALRNVP---DIEKTILEM 144
Query: 224 VRVLKPGGVGVVWDLLH 240
RV+KPGG V +L H
Sbjct: 145 KRVVKPGGRVVNLELAH 161
|
|
| TIGR_CMR|CHY_1809 CHY_1809 "2-heptaprenyl-1,4-naphthoquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 115 (45.5 bits), Expect = 0.00017, P = 0.00017
Identities = 40/137 (29%), Positives = 61/137 (44%)
Query: 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA 163
+R V+ S LD+ CG G+ +A + G G VVGLD + +
Sbjct: 40 RRFAVKVSGLSAGGRGLDVACGTGMFAIELA---RVVGPTGEVVGLDFNENMLEVARKNI 96
Query: 164 KMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEM 223
+++ + G+ +LPF DN FDV T+G + R V + + + EM
Sbjct: 97 ARYSMEKIIKLVHGNALALPFPDNSFDVA-------TIG--FALRNVP---DIEKTILEM 144
Query: 224 VRVLKPGGVGVVWDLLH 240
RV+KPGG V +L H
Sbjct: 145 KRVVKPGGRVVNLELAH 161
|
|
| ASPGD|ASPL0000066575 AN7175 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 112 (44.5 bits), Expect = 0.00068, P = 0.00068
Identities = 36/113 (31%), Positives = 54/113 (47%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179
LDIGCG G + +A + G G V G++ S A G+ VT + GD+
Sbjct: 86 LDIGCGPGSITVDLA---RLVGPTGHVTGIEYVSDPLDSAAALAASSGITN-VTFQVGDI 141
Query: 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
+L F D+ FDVV H H+ ++ + ++ L EM RV+K GG+
Sbjct: 142 HALQFDDDTFDVV------HV------HQVLQHIRDPVQALREMRRVVKQGGI 182
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.327 0.138 0.424 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 293 293 0.00091 115 3 11 22 0.42 33
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 613 (65 KB)
Total size of DFA: 213 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.29u 0.10s 23.39t Elapsed: 00:00:01
Total cpu time: 23.29u 0.10s 23.39t Elapsed: 00:00:01
Start: Fri May 10 12:43:13 2013 End: Fri May 10 12:43:14 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 293 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 5e-18 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 2e-17 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 1e-13 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 1e-13 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 5e-11 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 9e-11 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 5e-10 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 7e-10 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 8e-10 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 5e-09 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 1e-08 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 1e-07 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 3e-07 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 5e-07 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 1e-06 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 1e-05 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-05 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 7e-05 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 9e-05 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 9e-05 | |
| PLN02232 | 160 | PLN02232, PLN02232, ubiquinone biosynthesis methyl | 3e-04 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 3e-04 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 4e-04 | |
| PRK06922 | 677 | PRK06922, PRK06922, hypothetical protein; Provisio | 0.002 | |
| pfam13679 | 143 | pfam13679, Methyltransf_32, Methyltransferase doma | 0.002 | |
| PLN02490 | 340 | PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | 0.003 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 5e-18
Identities = 39/113 (34%), Positives = 53/113 (46%), Gaps = 24/113 (21%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179
LD+GCG G+L A+A + RV G+D + L A+ +++V GD
Sbjct: 1 LDVGCGTGLLAEALARRGG-----ARVTGVD----LSPEMLALARKRAPRKFV---VGDA 48
Query: 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
LPF D FDVVVS+ H + + R L E+ RVLKPGG
Sbjct: 49 EDLPFPDESFDVVVSSLVLHHL------------PDPERALREIARVLKPGGK 89
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-17
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR-TTLSTLRTAKMEGVQEYVTARE 176
LD+GCG G +A ++ G GRVVG+D + L+ R A + E+V
Sbjct: 22 RVLDVGCGPGNDARELA---RRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVR--- 75
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236
GD LPF D FD V S R ++ + R L E+ RVL+PGG VV
Sbjct: 76 GDADGLPFPDGSFDAVRSD------------RVLQHLEDPARALAEIARVLRPGGRVVVL 123
Query: 237 D 237
D
Sbjct: 124 D 124
|
Length = 241 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-13
Identities = 42/129 (32%), Positives = 56/129 (43%), Gaps = 23/129 (17%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK---MEGVQEYVTARE 176
LD+ CG G +A K+ G VVGLD + S L A+ + + V
Sbjct: 56 LDVACGTGD----MALLLAKSVGTGEVVGLD----ISESMLEVAREKLKKKGVQNVEFVV 107
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236
GD +LPF DN FD V + +G R V + + L EM RVLKPGG +V
Sbjct: 108 GDAENLPFPDNSFDAVTIS---------FGLRNV---TDIDKALKEMYRVLKPGGRLLVL 155
Query: 237 DLLHVPEYV 245
+ V
Sbjct: 156 EFSKPDNPV 164
|
Length = 238 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 1e-13
Identities = 46/131 (35%), Positives = 59/131 (45%), Gaps = 26/131 (19%)
Query: 112 DWSTVK---TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK---- 164
W V+ LD+ CG G L A+A K G G VVGLD + L +
Sbjct: 45 KWLGVRPGDKVLDLACGTGDLAIALA---KAVGKTGEVVGLD----FSEGMLAVGREKLR 97
Query: 165 MEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV 224
G+ V +GD +LPF DN FD V T+ +G R V + + L EM
Sbjct: 98 DLGLSGNVEFVQGDAEALPFPDNSFDAV-------TIA--FGLRNVP---DIDKALREMY 145
Query: 225 RVLKPGGVGVV 235
RVLKPGG V+
Sbjct: 146 RVLKPGGRLVI 156
|
Length = 239 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-11
Identities = 39/123 (31%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177
LD+GCG G L A+A+ RV G+D L R A + + V +G
Sbjct: 1 RVLDLGCGTGALALALASGPGA-----RVTGVDISPVA-LELARKAAAALLADNVEVLKG 54
Query: 178 DVRSLPF-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236
D LP D FDV++S H + + R L E R+LKPGGV V+
Sbjct: 55 DAEELPPEADESFDVIISDPPLHHL-----------VEDLARFLEEARRLLKPGGVLVLT 103
Query: 237 DLL 239
+L
Sbjct: 104 LVL 106
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 9e-11
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 24/147 (16%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT-AKMEGVQEYVTAR 175
LD+GCG G L +A +K G VVG+D + + + AK G + V
Sbjct: 5 IKVLDLGCGTGYLTFILA---EKLGPGAEVVGIDISE-EAIEKAKENAKKLGYEN-VEFI 59
Query: 176 EGDVRSLP---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
+GD+ LP DN FDVV+S + + + VL E++RVLKPGGV
Sbjct: 60 QGDIEELPQLQLEDNSFDVVISNEVLNHLP-----DPDK-------VLEEIIRVLKPGGV 107
Query: 233 GVV---WDLLHVPEYVRRLQELKMEDI 256
+V L +P + L+ L +
Sbjct: 108 LIVSDPVLLSELPALLEDLERLYAGVL 134
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 5e-10
Identities = 43/123 (34%), Positives = 61/123 (49%), Gaps = 20/123 (16%)
Query: 113 WSTVKTA---LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR--TTLSTLRTAKMEG 167
WS K LD+ CG G L ++ +K GS G+V+GLD ++ + K +
Sbjct: 68 WSGAKMGDRVLDLCCGSGDLAFLLS---EKVGSDGKVMGLDFSSEQLAVAASRQELKAKS 124
Query: 168 VQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVL 227
+ + EGD LPF D YFD + T+G YG R V +R++ + EM RVL
Sbjct: 125 CYKNIEWIEGDATDLPFDDCYFDAI-------TMG--YGLRNV---VDRLKAMQEMYRVL 172
Query: 228 KPG 230
KPG
Sbjct: 173 KPG 175
|
Length = 261 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 7e-10
Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 31/143 (21%)
Query: 118 TALDIGCGRGI--LLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ---EYV 172
T LD+G G G L A ++ G G+V+G+D T L A+ + V
Sbjct: 80 TVLDLGSGGGFDCFLAA-----RRVGPTGKVIGVD----MTPEMLAKARANARKAGYTNV 130
Query: 173 TAREGDVRSLPFGDNYFDVVVSAAFFHTVG-KEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
R G++ +LP DN DV++S + KE RV E RVLKPGG
Sbjct: 131 EFRLGEIEALPVADNSVDVIISNCVINLSPDKE-------------RVFKEAFRVLKPGG 177
Query: 232 VGVVWDLLH---VPEYVRRLQEL 251
+ D++ +PE +R EL
Sbjct: 178 RFAISDVVLRGELPEEIRNDAEL 200
|
Length = 272 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 8e-10
Identities = 42/115 (36%), Positives = 55/115 (47%), Gaps = 16/115 (13%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
+ALD+ CG A+A + G G V+GLD + LS R + V
Sbjct: 47 TSALDVCCGTADWSIALA---EAVGPEGHVIGLDFSE-NMLSVGRQKVKDAGLHNVELVH 102
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
G+ LPF DN FD V T+G +G R V + M+VL EM RV+KPGG
Sbjct: 103 GNAMELPFDDNSFDYV-------TIG--FGLRNV---PDYMQVLREMYRVVKPGG 145
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-09
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 28/142 (19%)
Query: 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST- 159
A +++G + LD+ CG G L +A K G+V G+D S+
Sbjct: 29 RRAVKLIGVFKG----QKVLDVACGTGDLAIELA---KSAPDRGKVTGVD------FSSE 75
Query: 160 -LRTAKME-GVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERM 217
L AK + + + + D +LPF DN FD V T+ +G R V +
Sbjct: 76 MLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAV-------TIA--FGLRNV---TDIQ 123
Query: 218 RVLGEMVRVLKPGGVGVVWDLL 239
+ L EM RVLKPGG V+ +
Sbjct: 124 KALREMYRVLKPGGRLVILEFS 145
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-08
Identities = 32/120 (26%), Positives = 42/120 (35%), Gaps = 13/120 (10%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179
LD G G G L A A RVVG++ R + G+ V GD
Sbjct: 5 LDPGAGSGAFLLAAARAGPD----ARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 180 RSLP-FGDNYFDVVVSAAFFH--TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236
R L D FD+V+ + + + R+LKPGGV VV
Sbjct: 61 RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAAL------RLLKPGGVLVVI 114
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-07
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 16/113 (14%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178
LD+GCG G +L A+A V G+D K + +G + V D
Sbjct: 1 ILDLGCGTGRVLRALARAGPS-----SVTGVDISKEALELAKERLRDKGPK--VRFVVAD 53
Query: 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
R LPF + FD+V+ A G + + + +L E R+L+PGG
Sbjct: 54 ARDLPFEEGSFDLVICA------GLSLDYLSPKQLR---ALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ--EYVTAR 175
LD+ G G ++ GS G+VVGLD + + AK EG E++
Sbjct: 50 KFLDVAGGTGDWTFGLS---DSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFL--- 103
Query: 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
+G+ LPF D+ FD+V T+ +G R + ++VL E RVLKPGG V
Sbjct: 104 QGNAEELPFEDDSFDIV-------TIS--FGLRNF---PDYLKVLKEAFRVLKPGGRVVC 151
Query: 236 WDLLHV 241
+
Sbjct: 152 LEFSKP 157
|
Length = 233 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-07
Identities = 49/198 (24%), Positives = 73/198 (36%), Gaps = 70/198 (35%)
Query: 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGS---LGRVVGLDCKKRTTLSTLRT------ 162
D K +D+GCG G GS L R G + K TLS ++
Sbjct: 115 DEKRPKRIVDVGCGIG-------------GSSRYLARKYGANVKG-ITLSPVQAARANAL 160
Query: 163 AKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGE 222
A +G+ + V+ + D + PF D FD+V S E G E ++ + + E
Sbjct: 161 AAAQGLSDKVSFQVADALNQPFEDGQFDLVWSM--------ESG----EHMPDKRKFVQE 208
Query: 223 MVRVLKPGG--VGVVW-----------------DLLH-------------VPEYVRRLQE 250
+ RV PGG + V W LL +YV+ +
Sbjct: 209 LARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAES 268
Query: 251 LKMEDIRV---SERVTAF 265
L ++DI+ SE V F
Sbjct: 269 LGLQDIKTEDWSEHVAPF 286
|
Length = 340 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 34/120 (28%), Positives = 47/120 (39%), Gaps = 23/120 (19%)
Query: 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYV 172
+ LDIGCG G L A+ +F + + D L AK + + E V
Sbjct: 33 FIPASVLDIGCGTGYLTRALLKRFPQ----AEFIANDISAGM-----LAQAKTK-LSENV 82
Query: 173 TAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
GD LP D+ FD++VS + L E+ RVLKPGG+
Sbjct: 83 QFICGDAEKLPLEDSSFDLIVSNLALQWCDD------------LSQALSELARVLKPGGL 130
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 13/113 (11%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178
LD+GCG G+L K V +D R S G+ E D
Sbjct: 35 VLDLGCGYGVL----GAALAKRSPDLEVTMVDINARALESARANLAANGL-ENGEVFWSD 89
Query: 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ S FD+++S FH G T A+R + R LKPGG
Sbjct: 90 LYS-AVEPGKFDLIISNPPFHA-----GKATDYDVAQRF--IAGAARHLKPGG 134
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-05
Identities = 34/119 (28%), Positives = 42/119 (35%), Gaps = 28/119 (23%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLD------CKKRTTLSTLRTAKMEGVQEYVT 173
LDIGCG G LL A+ G+D L+ L V
Sbjct: 1 LDIGCGTGTLLRALLEALPG----LEYTGVDISPAALEAAAERLAALG----LLDAVRVR 52
Query: 174 AREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D L G FDVVV++ H A+ VL + R+LKPGGV
Sbjct: 53 LDVLDAIDLDPGS--FDVVVASNVLH------------HLADPRAVLRNLRRLLKPGGV 97
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 18/116 (15%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
T LDIGCG G L A ++ VVG+ + + G+++ V R
Sbjct: 74 MTLLDIGCGWGGLAIYAAEEYG-----VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRL 128
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D R + FD +VS F VGKE + +LKPGG
Sbjct: 129 QDYRDF---EEPFDRIVSVGMFEHVGKENYDDFFKKVY----------ALLKPGGR 171
|
Length = 283 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 9e-05
Identities = 29/119 (24%), Positives = 40/119 (33%), Gaps = 20/119 (16%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
LDIGCG G L +A F RV G+D L R + +T +
Sbjct: 3 ARVLDIGCGTGSLAIELARLFPG----ARVTGVD-LSPEMLELARENAKLALGPRITFVQ 57
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
GD FD V + + +L + +LKPGG V+
Sbjct: 58 GDAPDALDLLEGFDAVFIGGGGGDL---------------LELLDALASLLKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 9e-05
Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 37/170 (21%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY-VTAR 175
L++G G GI VA K G +VVG+D AK+ ++ V
Sbjct: 25 DRVLEVGTGSGI----VAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVI 78
Query: 176 EGDVRSLPFGDNYFDVVV------------------SAAFFHTVGKEYGHRTVEAAAERM 217
D+ PF + FDV++ + A G + G ++
Sbjct: 79 RSDLFE-PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYAL---SGGKDGREVID------ 128
Query: 218 RVLGEMVRVLKPGGVG--VVWDLLHVPEYVRRLQELKMEDIRVSERVTAF 265
R L E+ R LKPGG + L E + L++L E V+E F
Sbjct: 129 RFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPF 178
|
Length = 188 |
| >gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 3e-04
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 14/86 (16%)
Query: 147 VGLD--CKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKE 204
+GLD ++ +T ++ K + + EGD LPF D FD V T+G
Sbjct: 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAV-------TMG-- 51
Query: 205 YGHRTVEAAAERMRVLGEMVRVLKPG 230
YG R V +R+R + EM RVLKPG
Sbjct: 52 YGLRNV---VDRLRAMKEMYRVLKPG 74
|
Length = 160 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 21/115 (18%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
KT LD+GCG GIL A+A K G+ +VVG+D + + A++ GV+ V A+
Sbjct: 164 KTVLDVGCGSGIL--AIAA--AKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKG 218
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ +P FDV+V+ + + + ++ R+LKPGG
Sbjct: 219 FLLLEVPENGP-FDVIVANILAEVL---------------VELAPDIKRLLKPGG 257
|
Length = 300 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVT 173
LD+G G G L +A + +K ++VG++ ++ R + ++E +
Sbjct: 43 PKKGRILDLGAGNGALGLLLAQRTEKA----KIVGVEIQEEAAEMAQRNVALNPLEERIQ 98
Query: 174 AREGDV----RSLPFGDNYFDVVVSAAFFHTVGKEYG---HRTVEAAAERMRVLGEMVRV 226
E D+ ++L F FD+++ + G R A E L +++R
Sbjct: 99 VIEADIKEFLKALVFAS--FDLIICNPPYFKQGSRLNENPLRA-IARHEITLDLEDLIRA 155
Query: 227 ----LKPGG 231
LKPGG
Sbjct: 156 AAKLLKPGG 164
|
Length = 248 |
| >gnl|CDD|180751 PRK06922, PRK06922, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.002
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 25/137 (18%)
Query: 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY 171
D+ T +D+G G G++L+ + + + R+ G+D + + + T K + E
Sbjct: 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDK----RIYGID----ISENVIDTLKKKKQNEG 466
Query: 172 VT--AREGDVRSLP--FGDNYFDVVVSAAFFH-------TVGKEYGHRTVEAAAERMRVL 220
+ +GD +L F D +V ++ H GK++ H ++ L
Sbjct: 467 RSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKG------L 520
Query: 221 GEMVRVLKPGGVGVVWD 237
VLKPGG ++ D
Sbjct: 521 QSAYEVLKPGGRIIIRD 537
|
Length = 677 |
| >gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.002
Identities = 18/77 (23%), Positives = 31/77 (40%)
Query: 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK 164
++ V D + T +D G G+G L + K RVVG+D + A+
Sbjct: 15 PLIKEVLDKTGCITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELVEKANARAQ 74
Query: 165 MEGVQEYVTAREGDVRS 181
G + ++ EG +
Sbjct: 75 KLGFNKRMSFLEGTIAG 91
|
This family appears to be a methyltransferase domain. Length = 143 |
| >gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.003
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 16/98 (16%)
Query: 142 SLGRVVGLDCKKRTTLST----LRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAF 197
+LG V +D K T L L AK + + EGD LPF +Y D VSA
Sbjct: 128 TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAG- 186
Query: 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
++E + R + E RVLK GG +
Sbjct: 187 -----------SIEYWPDPQRGIKEAYRVLKIGGKACL 213
|
Length = 340 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 293 | |||
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.94 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.93 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.93 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.92 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.9 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.9 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.89 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.89 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.87 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.86 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.85 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.85 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.83 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.82 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.81 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.8 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.79 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.79 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.78 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.78 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.78 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.78 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.78 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.77 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.77 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.76 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.76 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.76 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.75 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.75 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.75 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.75 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.74 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.74 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.74 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.74 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.73 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.73 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.73 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.72 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.71 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.71 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.71 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.71 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.71 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.71 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.7 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.7 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.69 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.69 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.68 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.68 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.68 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.68 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.67 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.67 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.66 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.66 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.66 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.66 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.66 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.65 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.65 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.65 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.65 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.65 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.64 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.64 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.63 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.63 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.63 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.63 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.63 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.62 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.62 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.62 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.62 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.62 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.61 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.61 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.61 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.61 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.6 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.6 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.6 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.6 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.59 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.59 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.59 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.58 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.58 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.57 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.57 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.56 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.56 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.55 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.55 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.53 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.53 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.53 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.52 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.52 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.51 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.51 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.5 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.5 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.5 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.49 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.49 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.49 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.48 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.48 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.48 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.47 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.47 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.47 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.47 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.47 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.46 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.45 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.45 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.45 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.45 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.45 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.45 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.45 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.44 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.44 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.44 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.44 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.44 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.43 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.42 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.42 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.41 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.41 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.4 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.4 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.38 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.37 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.34 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.33 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.31 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.3 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.29 | |
| PLN02476 | 278 | O-methyltransferase | 99.29 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.29 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.28 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.28 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.28 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.28 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.27 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.25 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.24 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.23 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.22 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.22 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.22 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.21 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.21 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.21 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.2 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.19 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.19 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.19 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.19 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.18 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.17 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.14 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.14 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.13 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.13 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.13 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.12 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.12 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 99.11 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.1 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.1 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.1 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.09 | |
| PLN02366 | 308 | spermidine synthase | 99.08 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.07 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.07 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.07 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.07 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 99.03 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.02 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 99.02 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.99 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.99 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.98 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.96 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.94 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.9 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.89 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.89 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.85 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.85 | |
| PLN02823 | 336 | spermine synthase | 98.85 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.85 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.84 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.84 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.82 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.81 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.8 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.8 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.79 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.77 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.73 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.73 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.72 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.71 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.7 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.68 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.67 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.66 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.65 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.62 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.61 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.59 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.57 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.56 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.55 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.55 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.53 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.52 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.51 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.49 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.42 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.37 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.35 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.35 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.33 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.28 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.27 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.24 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.18 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.17 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.15 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.14 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.14 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 98.12 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 98.08 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.06 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.05 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 98.04 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.03 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 97.98 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.96 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.96 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.92 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.91 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.88 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.85 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.8 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.79 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.75 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 97.75 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.71 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.7 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 97.68 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.64 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.6 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.59 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.56 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.53 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.43 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 97.36 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.35 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.32 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.31 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.18 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.12 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.12 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.03 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.99 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.98 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.96 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.96 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.92 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.73 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 96.64 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.6 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 96.55 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 96.53 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.44 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 96.4 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.39 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.3 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.26 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.26 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 96.25 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 96.24 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.23 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.22 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 96.0 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.98 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 95.98 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.91 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 95.82 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 95.77 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.76 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.55 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 95.49 | |
| PHA01634 | 156 | hypothetical protein | 95.43 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.25 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 95.13 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 95.07 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 94.69 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 94.58 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 94.35 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 94.25 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.25 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.24 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 94.21 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.1 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 94.01 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.0 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.96 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 93.82 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 93.6 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 93.59 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 93.58 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.51 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 92.95 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 92.71 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 92.69 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 92.67 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 92.58 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 92.28 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 92.25 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 92.15 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 91.78 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 91.78 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 91.59 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 91.57 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 91.41 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 91.4 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 91.31 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 91.27 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 91.24 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 91.21 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 91.2 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 91.06 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 91.04 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 90.7 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 90.6 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 90.51 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 90.35 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.29 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 90.27 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 90.21 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 90.19 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 90.19 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 90.07 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 89.94 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.81 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 89.81 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 89.8 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 89.78 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 89.69 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.62 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 89.52 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 89.5 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.42 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 89.27 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.26 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 89.25 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 89.24 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 89.14 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 88.99 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 88.98 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 88.95 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 88.8 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 88.78 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 88.76 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 88.74 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.71 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 88.7 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 88.66 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 88.65 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 88.57 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 88.53 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 88.47 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 88.4 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.34 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 88.17 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 88.15 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 88.08 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 88.02 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 87.89 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 87.87 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 87.52 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 87.52 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 87.49 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 87.41 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 87.23 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 87.19 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 86.87 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 86.85 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 86.64 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 86.38 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 86.36 | |
| PRK08643 | 256 | acetoin reductase; Validated | 86.26 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 86.1 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 86.09 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 86.02 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 85.78 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 85.69 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 85.67 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 85.6 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 85.44 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 85.21 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 85.2 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 85.16 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 85.01 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 84.98 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 84.92 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 84.88 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 84.78 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 84.75 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 84.67 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 84.67 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 84.63 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 84.55 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 84.31 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 84.16 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 84.0 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 83.93 | |
| PLN02494 | 477 | adenosylhomocysteinase | 83.86 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 83.36 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 83.25 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 83.24 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 83.16 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 83.07 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 82.99 | |
| TIGR00853 | 95 | pts-lac PTS system, lactose/cellobiose family IIB | 82.87 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 82.82 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 82.77 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 82.75 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 82.7 | |
| COG4121 | 252 | Uncharacterized conserved protein [Function unknow | 82.67 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 82.47 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 82.42 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 82.29 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 82.29 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 82.16 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 81.98 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 81.72 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 81.54 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 81.45 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 81.4 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 81.38 | |
| COG4353 | 192 | Uncharacterized conserved protein [Function unknow | 81.27 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 81.0 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 80.9 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 80.87 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 80.84 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 80.79 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 80.77 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 80.26 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 80.11 |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=190.13 Aligned_cols=236 Identities=14% Similarity=0.107 Sum_probs=182.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCcc--------
Q 022698 26 WQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVP-------- 97 (293)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~-------- 97 (293)
+...+.+|+.+.+......+++....+++....+.+...+.|+..++| ++|+.+...|++..+.
T Consensus 23 ~~~~a~~ll~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p--------l~yi~g~~~f~g~~f~v~~~vliP 94 (284)
T TIGR00536 23 PWLEALLLLLHDLGRERDLLLAFLTEELTPDEKERIFRLVLRRVKGVP--------VAYLLGSKEFYGLEFFVNEHVLIP 94 (284)
T ss_pred HHHHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCC--------HHHHhCcceEcCeEEEECCCCcCC
Confidence 344566666666666677777777778888777888899999999999 9999999999876543
Q ss_pred --chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q 022698 98 --LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 98 --~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~ 175 (293)
..+.+++.++..+....+..+|||+|||+|+++..++...+ +.+++++|+|+.+++.|++|++.++..+++.++
T Consensus 95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~----~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~ 170 (284)
T TIGR00536 95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP----NAEVIAVDISPDALAVAEENAEKNQLEHRVEFI 170 (284)
T ss_pred CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 33556666665543223336899999999999999998865 469999999999999999999998886679999
Q ss_pred EcCCCCCCCCCCcccEEEecchhhhhcc----------ccCcch---hhhHHHHHHHHHHHHHcccCCcEEEE-EcCCCc
Q 022698 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGK----------EYGHRT---VEAAAERMRVLGEMVRVLKPGGVGVV-WDLLHV 241 (293)
Q Consensus 176 ~~d~~~~~~~~~~fD~Iv~~~~~~~~~~----------~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~ 241 (293)
++|+.+ +++..+||+|++||||..... +|..+. .........+++++.+.|+|||++++ ++..+.
T Consensus 171 ~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~ 249 (284)
T TIGR00536 171 QSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ 249 (284)
T ss_pred ECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 999876 344458999999999864431 111111 11123566789999999999999988 666777
Q ss_pred hHHHHHHH-HcCCcceEEeeeeccceecceeeeeecC
Q 022698 242 PEYVRRLQ-ELKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 242 ~~~~~~l~-~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
..+.+++. +.||..+++.+|+.+.+ |++.+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~D~~g~~---R~~~~~~~ 283 (284)
T TIGR00536 250 KSLKELLRIKFTWYDVENGRDLNGKE---RVVLGFYH 283 (284)
T ss_pred HHHHHHHHhcCCCceeEEecCCCCCc---eEEEEEec
Confidence 78888888 47999999999999988 88887654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-25 Score=197.07 Aligned_cols=229 Identities=13% Similarity=0.052 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCccch---------
Q 022698 29 LIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLH--------- 99 (293)
Q Consensus 29 ~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~--------- 99 (293)
.+.+|+.+.+......+++....+++....+.+++.+.|+..++| ++|+.+..+||+..+.+.
T Consensus 166 dA~~LL~~~l~~~r~~l~~~~~~~l~~~~~~~~~~~v~RR~~geP--------lqYIlG~~~F~G~~f~V~p~vLIPRpe 237 (423)
T PRK14966 166 EARMLLQYASEYTRVQLLTRGGEEMPDEVRQRADRLAQRRLNGEP--------VAYILGVREFYGRRFAVNPNVLIPRPE 237 (423)
T ss_pred HHHHHHHHHHCcCHHHHhhCCcccCCHHHHHHHHHHHHHHHcCCC--------ceeEeeeeeecCcEEEeCCCccCCCcc
Confidence 356666666666677788877788888888889999999999999 999999999998766543
Q ss_pred -HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 100 -YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 100 -~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
+.+++.++..+ .++.+|||+|||+|++++.+++..+ ..+++++|+|+.|++.+++|++.++. ++.++++|
T Consensus 238 TE~LVe~aL~~l---~~~~rVLDLGcGSG~IaiaLA~~~p----~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gD 308 (423)
T PRK14966 238 TEHLVEAVLARL---PENGRVWDLGTGSGAVAVTVALERP----DAFVRASDISPPALETARKNAADLGA--RVEFAHGS 308 (423)
T ss_pred HHHHHHHhhhcc---CCCCEEEEEeChhhHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcc
Confidence 34555554443 3456899999999999999987765 46999999999999999999988764 59999999
Q ss_pred CCCCCC-CCCcccEEEecchhhhhcc----------ccCcchh---hhHHHHHHHHHHHHHcccCCcEEEE-EcCCCchH
Q 022698 179 VRSLPF-GDNYFDVVVSAAFFHTVGK----------EYGHRTV---EAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVPE 243 (293)
Q Consensus 179 ~~~~~~-~~~~fD~Iv~~~~~~~~~~----------~~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~ 243 (293)
+.+... ..++||+|+|||||..... ||..+.+ ...+....+++.+.+.|+|||.+++ ++..+.+.
T Consensus 309 l~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~ 388 (423)
T PRK14966 309 WFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAA 388 (423)
T ss_pred hhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHH
Confidence 876432 2457999999999854321 1111111 1112345677778899999999877 67778889
Q ss_pred HHHHHHHcCCcceEEeeeeccceecceeeeeecC
Q 022698 244 YVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 244 ~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
+.+++++.||..+++.+|+.+.+ |++.++++
T Consensus 389 V~~ll~~~Gf~~v~v~kDl~G~d---R~v~~~~~ 419 (423)
T PRK14966 389 VRGVLAENGFSGVETLPDLAGLD---RVTLGKYM 419 (423)
T ss_pred HHHHHHHCCCcEEEEEEcCCCCc---EEEEEEEh
Confidence 99999999999999999999988 99988765
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=199.85 Aligned_cols=234 Identities=10% Similarity=0.051 Sum_probs=183.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCccch------
Q 022698 26 WQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLH------ 99 (293)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~------ 99 (293)
....+.+|+.+.+......+++....+++....+.+...+.|+..++| ++|+.+..+||+..+.+.
T Consensus 24 ~~~~a~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~eP--------lqYI~G~~~F~g~~f~V~~~VLIP 95 (506)
T PRK01544 24 PQLEARILLQHVINKPIEYLLINLDEQLNEAEIEAFEKLLERRLKHEP--------IAYITGVKEFYSREFIVNKHVLIP 95 (506)
T ss_pred HHHHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCC--------HHHHhCcCEEcCcEEEeCCCcccC
Confidence 344466666666665677777777778888777889999999999999 999999999998876544
Q ss_pred ----HHHHHHHHHhcCC-----------------------CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC
Q 022698 100 ----YDMAQRMVGSVND-----------------------WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK 152 (293)
Q Consensus 100 ----~~~~~~l~~~~~~-----------------------~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis 152 (293)
+.+++++++.+.. ..+..+|||+|||+|++++.++..++ +++++++|+|
T Consensus 96 RpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p----~~~v~avDis 171 (506)
T PRK01544 96 RSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELP----NANVIATDIS 171 (506)
T ss_pred CCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCC----CCeEEEEECC
Confidence 5677777655421 11345899999999999999988766 4699999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhcc-----------ccCcchhh---hHHHHHH
Q 022698 153 KRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGK-----------EYGHRTVE---AAAERMR 218 (293)
Q Consensus 153 ~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~-----------~~~~~~~~---~~~~~~~ 218 (293)
+.+++.|++|+..+++.+++.++.+|+.+. .+.++||+|+|||||..... ++..+.+. ..+....
T Consensus 172 ~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ 250 (506)
T PRK01544 172 LDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFI 250 (506)
T ss_pred HHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHH
Confidence 999999999999888877899999998652 34568999999999875432 12111111 1224556
Q ss_pred HHHHHHHcccCCcEEEE-EcCCCchHHHHHHHHcCCcceEEeeeeccceecceeeeee
Q 022698 219 VLGEMVRVLKPGGVGVV-WDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFR 275 (293)
Q Consensus 219 ~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~ 275 (293)
+++.+.++|+|||.+++ ++..+.+.+.+++.+.||..+++.+|+.+.+ |++.+.
T Consensus 251 il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~D~~g~~---R~v~~~ 305 (506)
T PRK01544 251 IAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKDLQGHS---RVILIS 305 (506)
T ss_pred HHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEecCCCCc---eEEEec
Confidence 78888999999999987 6677788899999999999999999999987 777655
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=179.89 Aligned_cols=217 Identities=18% Similarity=0.153 Sum_probs=167.5
Q ss_pred HHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCccch----------HHHHHHHHHhc
Q 022698 41 ISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLH----------YDMAQRMVGSV 110 (293)
Q Consensus 41 ~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~----------~~~~~~l~~~~ 110 (293)
..+.+.......++....+.+.+...|+..++| ++|+.+...|+...+.+. +.+++.++...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~P--------~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~ 107 (280)
T COG2890 36 PRDQLLAHPEAELSEEELERLRELLERRAEGEP--------VAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALL 107 (280)
T ss_pred CHHHHhhccccccCHHHHHHHHHHHHHHHCCCC--------HhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhh
Confidence 455666666667777777888888888899999 999999999987776544 34555554333
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCccc
Q 022698 111 NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFD 190 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 190 (293)
.. ... +|||+|||||++++.++...+ .++|+|+|+|+.|++.|++|+..+++ .++.++.+|+.+ +. .++||
T Consensus 108 ~~-~~~-~ilDlGTGSG~iai~la~~~~----~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~-~~-~~~fD 178 (280)
T COG2890 108 LQ-LDK-RILDLGTGSGAIAIALAKEGP----DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE-PL-RGKFD 178 (280)
T ss_pred hh-cCC-cEEEecCChHHHHHHHHhhCc----CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccc-cc-CCcee
Confidence 22 222 799999999999999999877 46999999999999999999999998 567777778776 23 34899
Q ss_pred EEEecchhhhhc----------cccCcchh---hhHHHHHHHHHHHHHcccCCcEEEE-EcCCCchHHHHHHHHcC-Ccc
Q 022698 191 VVVSAAFFHTVG----------KEYGHRTV---EAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVPEYVRRLQELK-MED 255 (293)
Q Consensus 191 ~Iv~~~~~~~~~----------~~~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~l~~~g-f~~ 255 (293)
+|||||||.... .||..+.. ...+....++.++.+.|+|||.+++ ++..+.+.+.+++.+.| |..
T Consensus 179 lIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~ 258 (280)
T COG2890 179 LIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEI 258 (280)
T ss_pred EEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceE
Confidence 999999997665 12211111 1122455688888899999999888 77788999999999999 788
Q ss_pred eEEeeeeccceecceeeeeecC
Q 022698 256 IRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
+.+.+++.+.. |++.+++.
T Consensus 259 v~~~~d~~g~~---rv~~~~~~ 277 (280)
T COG2890 259 VETLKDLFGRD---RVVLAKLR 277 (280)
T ss_pred EEEEecCCCce---EEEEEEec
Confidence 88999999977 77777654
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=173.92 Aligned_cols=225 Identities=15% Similarity=0.063 Sum_probs=164.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhh-cccccccchhhhhhHhhhcccccccCccch-----
Q 022698 26 WQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFA-AGFSGAVLALSSVCLFFAAGNFFYSAVPLH----- 99 (293)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~----- 99 (293)
+...+.+|+.+.+....+.+++....+++....+.+..++.|+. .++| ++|+.+...|++..+.+.
T Consensus 29 ~~~~a~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~P--------l~yi~g~~~f~g~~f~v~~~vli 100 (284)
T TIGR03533 29 AWDEAVYLVLHALHLPLDILEPFLDARLTPSEKERILELIERRIEERIP--------VAYLTNEAWFAGLEFYVDERVLI 100 (284)
T ss_pred HHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHhCCCc--------HHHHcCCCeecCcEEEECCCCcc
Confidence 34456667777766667777777777888777788888899997 7999 999999999987654433
Q ss_pred -----HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 100 -----YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 100 -----~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
+.++...+.......++.+|||+|||+|+++..+++..+ +.+++++|+|+.+++.|++|++.+++.+++.+
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~----~~~v~avDis~~al~~A~~n~~~~~~~~~i~~ 176 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP----EAEVDAVDISPDALAVAEINIERHGLEDRVTL 176 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence 345554444221123456899999999999999998765 46999999999999999999999988778999
Q ss_pred EEcCCCCCCCCCCcccEEEecchhhhhcc----------ccCcch---hhhHHHHHHHHHHHHHcccCCcEEEE-EcCCC
Q 022698 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGK----------EYGHRT---VEAAAERMRVLGEMVRVLKPGGVGVV-WDLLH 240 (293)
Q Consensus 175 ~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~----------~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~ 240 (293)
+++|+.+. ++.++||+|++||||..... ++..+. .........+++.+.++|+|||++++ ++. .
T Consensus 177 ~~~D~~~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~ 254 (284)
T TIGR03533 177 IQSDLFAA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-S 254 (284)
T ss_pred EECchhhc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-C
Confidence 99998652 34568999999999864321 111000 01112346788999999999999988 443 3
Q ss_pred chHHHHHHHHcCCcceEEeeeecc
Q 022698 241 VPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 241 ~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
.+.+.+.+.+.||.-......-.+
T Consensus 255 ~~~v~~~~~~~~~~~~~~~~~~~~ 278 (284)
T TIGR03533 255 MEALEEAYPDVPFTWLEFENGGDG 278 (284)
T ss_pred HHHHHHHHHhCCCceeeecCCCcE
Confidence 468888899989876544443333
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-22 Score=172.42 Aligned_cols=228 Identities=19% Similarity=0.149 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCccch----------
Q 022698 30 IFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLH---------- 99 (293)
Q Consensus 30 ~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~---------- 99 (293)
+.+++.+.+....+.+++....+++....+.+.+.+.|+..++| ++|+.+...||...+.+.
T Consensus 22 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--------~~~i~g~~~f~~~~~~~~~~~lipr~~t 93 (275)
T PRK09328 22 AELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEP--------LQYILGEAEFWGLDFKVSPGVLIPRPET 93 (275)
T ss_pred HHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCC--------HHHHceeceEcCcEEEECCCceeCCCCc
Confidence 44445555444455566655566665555778888889999999 999999999887654333
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+.+.+.++.... ..++.+|||+|||+|.++..++...+ ..+++++|+|+.+++.+++|+. .....++.++.+|+
T Consensus 94 e~l~~~~~~~~~-~~~~~~vLDiG~GsG~~~~~la~~~~----~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~ 167 (275)
T PRK09328 94 EELVEWALEALL-LKEPLRVLDLGTGSGAIALALAKERP----DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDW 167 (275)
T ss_pred HHHHHHHHHhcc-ccCCCEEEEEcCcHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccc
Confidence 456666654432 34567999999999999999998875 4699999999999999999988 33345699999998
Q ss_pred CCCCCCCCcccEEEecchhhhhcc-----------ccCcc---hhhhHHHHHHHHHHHHHcccCCcEEEE-EcCCCchHH
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGK-----------EYGHR---TVEAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVPEY 244 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~-----------~~~~~---~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~ 244 (293)
.+. ...++||+|++||||..... ++..+ +....+....+++++.++|+|||.+++ ++..+.+++
T Consensus 168 ~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~ 246 (275)
T PRK09328 168 FEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAV 246 (275)
T ss_pred cCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHH
Confidence 663 33578999999999864321 11111 111223556788999999999999988 455566789
Q ss_pred HHHHHHcCCcceEEeeeeccceecceeeeee
Q 022698 245 VRRLQELKMEDIRVSERVTAFMVSSHIVSFR 275 (293)
Q Consensus 245 ~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~ 275 (293)
.+++.+.||..+++..|+.+.. |++.++
T Consensus 247 ~~~l~~~gf~~v~~~~d~~~~~---r~~~~~ 274 (275)
T PRK09328 247 RALLAAAGFADVETRKDLAGRD---RVVLGR 274 (275)
T ss_pred HHHHHhCCCceeEEecCCCCCc---eEEEEE
Confidence 9999999999999988998877 877764
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=164.68 Aligned_cols=123 Identities=33% Similarity=0.458 Sum_probs=107.8
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
.+...-+.+++.+.. .++.+|||+|||||.++..+++..+ .++|+++|+|+.|++.+++.+...+..+ ++|+.+
T Consensus 35 ~~~~Wr~~~i~~~~~-~~g~~vLDva~GTGd~a~~~~k~~g----~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~ 108 (238)
T COG2226 35 LHRLWRRALISLLGI-KPGDKVLDVACGTGDMALLLAKSVG----TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVG 108 (238)
T ss_pred chHHHHHHHHHhhCC-CCCCEEEEecCCccHHHHHHHHhcC----CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEe
Confidence 334445556665543 3788999999999999999998876 4699999999999999999999888766 999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
|+.++|+++++||+|.+...++.++ +...+|++++|+|||||++++.+.
T Consensus 109 dAe~LPf~D~sFD~vt~~fglrnv~------------d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 109 DAENLPFPDNSFDAVTISFGLRNVT------------DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred chhhCCCCCCccCEEEeeehhhcCC------------CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 9999999999999999999999999 999999999999999999998653
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=170.84 Aligned_cols=222 Identities=14% Similarity=0.033 Sum_probs=160.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhh-cccccccchhhhhhHhhhcccccccCccch-----
Q 022698 26 WQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFA-AGFSGAVLALSSVCLFFAAGNFFYSAVPLH----- 99 (293)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~----- 99 (293)
....+.+|+.+.+....+.+++....+++....+.+.+.+.|+. .++| ++|+.+...|++..+.+.
T Consensus 41 ~~~~a~~ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~~~P--------l~yi~g~~~F~g~~f~v~~~vli 112 (307)
T PRK11805 41 AWDEAVQLVLHALHLPLDIPEPFLDARLTPSEKARILELIERRINERIP--------AAYLTNEAWFCGLEFYVDERVLV 112 (307)
T ss_pred HHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHHCCcc--------HHHHcCcceEcCcEEEECCCCcC
Confidence 34456677777766667777777777887777778889999997 6999 999999999987655433
Q ss_pred -----HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 100 -----YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 100 -----~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
+.++...+.......+..+|||+|||+|+++..++...+ ..+++++|+|+.+++.|++|++.+++.+++.+
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p----~~~V~avDis~~al~~A~~n~~~~~l~~~i~~ 188 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP----DAEVDAVDISPDALAVAEINIERHGLEDRVTL 188 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Confidence 344444443221112236899999999999999998765 46999999999999999999999888778999
Q ss_pred EEcCCCCCCCCCCcccEEEecchhhhhcc----------ccCcchh---hhHHHHHHHHHHHHHcccCCcEEEEEcCCCc
Q 022698 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGK----------EYGHRTV---EAAAERMRVLGEMVRVLKPGGVGVVWDLLHV 241 (293)
Q Consensus 175 ~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~----------~~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 241 (293)
+++|+.+. ++.++||+|++||||..... ++..+.+ ...+....+++++.+.|+|||.+++--....
T Consensus 189 ~~~D~~~~-l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~ 267 (307)
T PRK11805 189 IESDLFAA-LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR 267 (307)
T ss_pred EECchhhh-CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence 99998652 34568999999999854221 1211111 1112456788999999999999988322234
Q ss_pred hHHHHHHHHcCCcceEEee
Q 022698 242 PEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~~~~ 260 (293)
..+.+.+.+.||.-.....
T Consensus 268 ~~~~~~~~~~~~~~~~~~~ 286 (307)
T PRK11805 268 VHLEEAYPDVPFTWLEFEN 286 (307)
T ss_pred HHHHHHHhhCCCEEEEecC
Confidence 4577777777776554433
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=161.50 Aligned_cols=209 Identities=17% Similarity=0.149 Sum_probs=154.4
Q ss_pred HHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCcc----------chHHHHHHHHHhcC
Q 022698 42 SSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVP----------LHYDMAQRMVGSVN 111 (293)
Q Consensus 42 ~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~----------~~~~~~~~l~~~~~ 111 (293)
.+.+......+++......+.....++..+.| ++++.+...|+...+. ....+.+.+++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--------l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~ 85 (251)
T TIGR03534 14 RTDLLLHPEKELTPEELARFEALLARRAKGEP--------VAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALERLK 85 (251)
T ss_pred HHHHhhcccCCCCHHHHHHHHHHHHHHHcCCC--------HHHHcccceEeceEEEECCCcccCCCChHHHHHHHHHhcc
Confidence 33334444455655555667778888888888 8888887777765443 33456666666653
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
..+.+|||+|||+|.++..++...+ ..+++++|+|+.+++.+++++..++.. ++.+.++|+.+ +++.++||+
T Consensus 86 --~~~~~ilDig~G~G~~~~~l~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~~~~~fD~ 157 (251)
T TIGR03534 86 --KGPLRVLDLGTGSGAIALALAKERP----DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-PLPGGKFDL 157 (251)
T ss_pred --cCCCeEEEEeCcHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-cCcCCceeE
Confidence 2346899999999999999998765 469999999999999999999988774 69999999977 345678999
Q ss_pred EEecchhhhhccccCcc--------------hhhhHHHHHHHHHHHHHcccCCcEEEEE-cCCCchHHHHHHHHcCCcce
Q 022698 192 VVSAAFFHTVGKEYGHR--------------TVEAAAERMRVLGEMVRVLKPGGVGVVW-DLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~l~~~gf~~~ 256 (293)
|++|+||.......... +.........+++++.++|+|||.+++. ...+..++.+.+++.||+.+
T Consensus 158 Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 158 IVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred EEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 99999987533110000 0011123457889999999999999884 44566778999999999999
Q ss_pred EEeeeeccce
Q 022698 257 RVSERVTAFM 266 (293)
Q Consensus 257 ~~~~~~~~~~ 266 (293)
++..++.+..
T Consensus 238 ~~~~d~~~~~ 247 (251)
T TIGR03534 238 ETRKDLAGKD 247 (251)
T ss_pred EEEeCCCCCc
Confidence 9998887755
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=166.26 Aligned_cols=116 Identities=33% Similarity=0.516 Sum_probs=87.1
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+++.+. ..++.+|||+|||+|..+..+++..+. ..+|+++|+|+.|++.|+++....+.. +++++++|+.++|+
T Consensus 38 ~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~---~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 38 KLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGP---NGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF 112 (233)
T ss_dssp HHHHHHT---S--EEEEET-TTSHHHHHHGGGSS------EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S
T ss_pred HHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCC---ccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC
Confidence 3444432 456789999999999999988876543 469999999999999999999887754 79999999999999
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++++||+|++...++.++ |+...+++++|+|||||++++.+
T Consensus 113 ~d~sfD~v~~~fglrn~~------------d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFP------------DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -TT-EEEEEEES-GGG-S------------SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCceeEEEHHhhHHhhC------------CHHHHHHHHHHHcCCCeEEEEee
Confidence 999999999999999988 88999999999999999999855
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-20 Score=158.89 Aligned_cols=138 Identities=25% Similarity=0.361 Sum_probs=111.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh--cCCCCceEEEEcCCCCCCCCCCcc
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM--EGVQEYVTAREGDVRSLPFGDNYF 189 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~f 189 (293)
...++.+|||+|||+|.++..+++..+. ..+|+|+|+|++|++.|+++... ....++++++++|+.++|+++++|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~---~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 146 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGS---DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYF 146 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCE
Confidence 3456789999999999999888776532 35999999999999999877542 222346999999999999888999
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC------------------------------
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------------ 239 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------------ 239 (293)
|+|+++..+++++ ++..+++++.|+|||||.+++.+..
T Consensus 147 D~V~~~~~l~~~~------------d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (261)
T PLN02233 147 DAITMGYGLRNVV------------DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAK 214 (261)
T ss_pred eEEEEecccccCC------------CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChH
Confidence 9999999999988 8899999999999999999886532
Q ss_pred -------------CchHHHHHHHHcCCcceEEeeeecc
Q 022698 240 -------------HVPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 240 -------------~~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
...++.++++++||+.++......+
T Consensus 215 ~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g 252 (261)
T PLN02233 215 EYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGG 252 (261)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCC
Confidence 2235678889999998876654334
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=155.92 Aligned_cols=188 Identities=18% Similarity=0.125 Sum_probs=136.3
Q ss_pred hhhHHHHHHhhcccccccchhhhhhHhhhcccccccCcc----------chHHHHHHHHHhcCCCCCCCeEEEEcCCCCh
Q 022698 59 SYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVP----------LHYDMAQRMVGSVNDWSTVKTALDIGCGRGI 128 (293)
Q Consensus 59 ~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~----------~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~ 128 (293)
..++.+++|+..++| ++|+.+...|++..+. ..+.+++.++..+....+..+|||+|||+|.
T Consensus 28 ~~~~~~~~rr~~~~P--------l~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~ 99 (251)
T TIGR03704 28 GELAAMVDRRVAGLP--------LEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGA 99 (251)
T ss_pred HHHHHHHHHHHcCCC--------HHHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHH
Confidence 457788999999999 9999999999765332 3345666665544322334589999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC--CCCcccEEEecchhhhhcc---
Q 022698 129 LLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF--GDNYFDVVVSAAFFHTVGK--- 203 (293)
Q Consensus 129 ~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~Iv~~~~~~~~~~--- 203 (293)
++..+++..+ +.+++++|+|+.+++.+++|++.++ ++++++|+.+... ..++||+|++||||.....
T Consensus 100 i~l~la~~~~----~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~ 171 (251)
T TIGR03704 100 VGAALAAALD----GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIAL 171 (251)
T ss_pred HHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhc
Confidence 9999988765 4689999999999999999998875 4688899876311 1357999999999864321
Q ss_pred --------ccCcch---hhhHHHHHHHHHHHHHcccCCcEEEE-EcCCCchHHHHHHHHcCCcceEE-eeee
Q 022698 204 --------EYGHRT---VEAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVPEYVRRLQELKMEDIRV-SERV 262 (293)
Q Consensus 204 --------~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~l~~~gf~~~~~-~~~~ 262 (293)
++..+. ....+....+++.+.++|+|||++++ +...+.+++.+.|++.||...-. ++|+
T Consensus 172 ~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 172 MPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 100000 01112345788888899999999887 55667788999999999885443 3344
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=161.18 Aligned_cols=142 Identities=23% Similarity=0.343 Sum_probs=118.5
Q ss_pred HHHHHHHHhcCC----CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 101 DMAQRMVGSVND----WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 101 ~~~~~l~~~~~~----~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
.+.+.+++.+.- ..++.+|||||||+|..+..+++.+ +++|+|+|+|+.+++.++++++..+..+++.+.+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-----g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~ 174 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-----GANVKGITLSPVQAARANALAAAQGLSDKVSFQV 174 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 345555555431 1456799999999999999988764 3599999999999999999998888777899999
Q ss_pred cCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-----------------
Q 022698 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----------------- 239 (293)
Q Consensus 177 ~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------- 239 (293)
+|+.++++++++||+|+++..++|++ +...+++++.++|||||.+++++..
T Consensus 175 ~D~~~~~~~~~~FD~V~s~~~~~h~~------------d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~ 242 (340)
T PLN02244 175 ADALNQPFEDGQFDLVWSMESGEHMP------------DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQK 242 (340)
T ss_pred cCcccCCCCCCCccEEEECCchhccC------------CHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHH
Confidence 99999888889999999999999998 8889999999999999999885421
Q ss_pred ---------------CchHHHHHHHHcCCcceEEe
Q 022698 240 ---------------HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 240 ---------------~~~~~~~~l~~~gf~~~~~~ 259 (293)
..+++.++++++||..+++.
T Consensus 243 ~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~ 277 (340)
T PLN02244 243 LLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTE 277 (340)
T ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEee
Confidence 23478888999999998765
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=148.61 Aligned_cols=145 Identities=30% Similarity=0.401 Sum_probs=118.1
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.++..+. ..++.+|||+|||+|..+..+++..+. +.+++++|+|+.+++.++++.+..+. ++++++.+|+.+++
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGP---EGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP 109 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC
Confidence 44555443 456789999999999999988877532 45999999999999999999887765 56999999998877
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-----------------------
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH----------------------- 240 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 240 (293)
+++++||+|+++.++++.+ ++..+++++.++|+|||.+++.+...
T Consensus 110 ~~~~~fD~V~~~~~l~~~~------------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 177 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRNVP------------DYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGK 177 (231)
T ss_pred CCCCCccEEEEecccccCC------------CHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhH
Confidence 7778999999999988887 77899999999999999998864321
Q ss_pred ---------------------chHHHHHHHHcCCcceEEeeeeccc
Q 022698 241 ---------------------VPEYVRRLQELKMEDIRVSERVTAF 265 (293)
Q Consensus 241 ---------------------~~~~~~~l~~~gf~~~~~~~~~~~~ 265 (293)
.+++.++++++||+.++++....|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~ 223 (231)
T TIGR02752 178 LFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGV 223 (231)
T ss_pred HhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccce
Confidence 1456789999999999877655453
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-19 Score=165.19 Aligned_cols=156 Identities=22% Similarity=0.287 Sum_probs=124.8
Q ss_pred hhhcccccccCccchHH--HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHH
Q 022698 85 FFAAGNFFYSAVPLHYD--MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT 162 (293)
Q Consensus 85 ~~~~~~f~~~~~~~~~~--~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~ 162 (293)
+.+...||...+.+... ..+.+++.+. ..++.+|||||||+|.++..+++.. +++++|+|+|+.+++.|+++
T Consensus 235 i~~~~~f~g~~~~v~~~v~~te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvDiS~~~l~~A~~~ 308 (475)
T PLN02336 235 ILRYERVFGEGFVSTGGLETTKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-----DVHVVGIDLSVNMISFALER 308 (475)
T ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHH
Confidence 77777777666554433 3455666654 4567799999999999998888764 35999999999999999988
Q ss_pred HHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---
Q 022698 163 AKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--- 239 (293)
Q Consensus 163 ~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--- 239 (293)
+... ..++.|..+|+.+.++++++||+|+|..+++|++ ++..++++++++|||||.+++.+..
T Consensus 309 ~~~~--~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~ 374 (475)
T PLN02336 309 AIGR--KCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQ------------DKPALFRSFFKWLKPGGKVLISDYCRSP 374 (475)
T ss_pred hhcC--CCceEEEEcCcccCCCCCCCEEEEEECCcccccC------------CHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 7533 3569999999988777778999999999999998 8899999999999999999985421
Q ss_pred -------------------CchHHHHHHHHcCCcceEEee
Q 022698 240 -------------------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 -------------------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
...++.++++++||+.+.+..
T Consensus 375 ~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 375 GTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred CCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence 234678899999999886654
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=143.22 Aligned_cols=212 Identities=13% Similarity=0.125 Sum_probs=152.6
Q ss_pred cccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccC----------ccchHHHHHHHHHhcCC--CCCCC
Q 022698 50 FEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSA----------VPLHYDMAQRMVGSVND--WSTVK 117 (293)
Q Consensus 50 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~----------~~~~~~~~~~l~~~~~~--~~~~~ 117 (293)
.+|+....-+.+.....++....| +||+.+...|-+.. .+..++.++++++.+.+ ...+.
T Consensus 79 ~~pl~~~ql~~i~~~~~~R~~r~P--------lQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~ 150 (328)
T KOG2904|consen 79 DDPLVILQLESIRWACLQRYKRMP--------LQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHT 150 (328)
T ss_pred ccccchhHHHHHHHHHHHHHhcCC--------hhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccc
Confidence 456666666667766677777999 99999999986543 44667899999887754 22345
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-----CCCCCCcccEE
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-----LPFGDNYFDVV 192 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~fD~I 192 (293)
.|||+|||+|++++.++..++ .++++|+|.|+.|+..|.+|+.++++.+++.++..++.. .+...++.|++
T Consensus 151 ~ildlgtGSGaIslsll~~L~----~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLP----QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred eEEEecCCccHHHHHHHhcCC----CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 799999999999999999988 479999999999999999999999999999998665543 12346899999
Q ss_pred EecchhhhhccccCcchhh--------------hHHHHHHHHHHHHHcccCCcEEEEEcC--CCchHHHHHH----HHcC
Q 022698 193 VSAAFFHTVGKEYGHRTVE--------------AAAERMRVLGEMVRVLKPGGVGVVWDL--LHVPEYVRRL----QELK 252 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~l----~~~g 252 (293)
+|||||..-.+...+++.+ .-+....++.-+.|+|+|||.+.+--. ...+.....+ .+--
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~ 306 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDS 306 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchhhc
Confidence 9999996554322111111 111334466667799999999988322 3334333332 3344
Q ss_pred CcceEEeeeeccceecceeeeeec
Q 022698 253 MEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 253 f~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
+..+.+..|+.+.+ |++..++
T Consensus 307 ~~~~~v~~Df~~~~---Rfv~i~r 327 (328)
T KOG2904|consen 307 NGKAAVVSDFAGRP---RFVIIHR 327 (328)
T ss_pred cchhheeecccCCc---ceEEEEe
Confidence 66777888888866 7776654
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-18 Score=146.29 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=110.8
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+. .++.+|||+|||+|..+..+++. +.+|+++|+|+.|++.|+++....+..++++++++|+.+++
T Consensus 35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~ 106 (255)
T PRK11036 35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA 106 (255)
T ss_pred HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh
Confidence 34555553 34579999999999999888875 35999999999999999999988887778999999998763
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------------
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------------ 238 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------------ 238 (293)
..+++||+|+++.++++++ ++..+++++.++|||||.+++...
T Consensus 107 ~~~~~~fD~V~~~~vl~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~ 174 (255)
T PRK11036 107 QHLETPVDLILFHAVLEWVA------------DPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPK 174 (255)
T ss_pred hhcCCCCCEEEehhHHHhhC------------CHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCcc
Confidence 4467899999999999988 788999999999999999976321
Q ss_pred -----------CCchHHHHHHHHcCCcceEE
Q 022698 239 -----------LHVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 239 -----------~~~~~~~~~l~~~gf~~~~~ 258 (293)
...+++.++++++||+.+..
T Consensus 175 ~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~ 205 (255)
T PRK11036 175 RKKRTLSPDYPLDPEQVYQWLEEAGWQIMGK 205 (255)
T ss_pred ccccCCCCCCCCCHHHHHHHHHHCCCeEeee
Confidence 11256888889999987654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-18 Score=146.24 Aligned_cols=140 Identities=16% Similarity=0.295 Sum_probs=114.2
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
....+++.+ .+.++.+|||||||+|..+..+++.. +++|+++|+|+.+++.++++... .+++.+...|+.+
T Consensus 40 ~~~~~l~~l-~l~~~~~VLDiGcG~G~~a~~la~~~-----~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~ 110 (263)
T PTZ00098 40 ATTKILSDI-ELNENSKVLDIGSGLGGGCKYINEKY-----GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILK 110 (263)
T ss_pred HHHHHHHhC-CCCCCCEEEEEcCCCChhhHHHHhhc-----CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCccc
Confidence 456666665 35678899999999999998887543 36999999999999999987654 2469999999988
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------------
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------------- 239 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 239 (293)
.++++++||+|+++..++|.+ ..++..++++++++|||||.+++.+..
T Consensus 111 ~~~~~~~FD~V~s~~~l~h~~----------~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~ 180 (263)
T PTZ00098 111 KDFPENTFDMIYSRDAILHLS----------YADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTL 180 (263)
T ss_pred CCCCCCCeEEEEEhhhHHhCC----------HHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCC
Confidence 777788999999988887765 337889999999999999999986531
Q ss_pred -CchHHHHHHHHcCCcceEEee
Q 022698 240 -HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 -~~~~~~~~l~~~gf~~~~~~~ 260 (293)
...++.++++++||+.++...
T Consensus 181 ~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 181 IPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred CCHHHHHHHHHHCCCCeeeEEe
Confidence 235788999999999988764
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=139.52 Aligned_cols=136 Identities=26% Similarity=0.369 Sum_probs=100.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
+..+|||+|||+|.++..+++..+ ..+|+++|+|+.+++.+++|++.+++.+ ++++..|..+. .+.++||+|+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~----~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~-~~~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP----DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA-LPDGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST----CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT-CCTTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc-ccccceeEEEE
Confidence 567999999999999999998766 4589999999999999999999999866 99999999873 34689999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEeeeeccc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSERVTAF 265 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~ 265 (293)
|||++.-. .....-...+++++.++|+|||.++++..... .....+ +..|..+++.....+|
T Consensus 105 NPP~~~~~-------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~-~~~~~l-~~~f~~~~~~~~~~~~ 166 (170)
T PF05175_consen 105 NPPFHAGG-------DDGLDLLRDFIEQARRYLKPGGRLFLVINSHL-GYERLL-KELFGDVEVVAKNKGF 166 (170)
T ss_dssp ---SBTTS-------HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS-CHHHHH-HHHHS--EEEEEESSE
T ss_pred ccchhccc-------ccchhhHHHHHHHHHHhccCCCEEEEEeecCC-ChHHHH-HHhcCCEEEEEECCCE
Confidence 99976544 00112457899999999999999976443222 222234 3346677777766664
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-18 Score=152.41 Aligned_cols=129 Identities=20% Similarity=0.242 Sum_probs=109.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|++++...+...++.++++|+.+++..+++||+|+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEE
Confidence 4568999999999999888753 4699999999999999998877655545799999999888766789999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------------CCchH
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-------------------------------LHVPE 243 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------------------~~~~~ 243 (293)
..+++|++ ++..+++++.++|||||.+++... ...++
T Consensus 205 ~~vLeHv~------------d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~e 272 (322)
T PLN02396 205 LEVIEHVA------------NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEE 272 (322)
T ss_pred hhHHHhcC------------CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHH
Confidence 99999999 889999999999999999987421 12467
Q ss_pred HHHHHHHcCCcceEEeee
Q 022698 244 YVRRLQELKMEDIRVSER 261 (293)
Q Consensus 244 ~~~~l~~~gf~~~~~~~~ 261 (293)
+.++++++||+.+++.-.
T Consensus 273 L~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 273 LSMILQRASVDVKEMAGF 290 (322)
T ss_pred HHHHHHHcCCeEEEEeee
Confidence 899999999998877443
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=129.56 Aligned_cols=109 Identities=34% Similarity=0.427 Sum_probs=90.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC-CCCCCCCCcccEEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV-RSLPFGDNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Iv 193 (293)
|+.+|||+|||+|..+..+++..+ +++++|+|+|+.+++.+++++...+..+++++++.|+ .... ..++||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP----GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-FLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT----TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-TSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-cCCCCCEEE
Confidence 467999999999999999998655 5799999999999999999997777778999999999 3332 245699999
Q ss_pred ecc-hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 194 SAA-FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 194 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++. ..+++. ..++..++++++.+.|+|||++++..
T Consensus 76 ~~~~~~~~~~---------~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLL---------PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCC---------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCcccccc---------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 998 444332 01377889999999999999999854
|
... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=136.04 Aligned_cols=141 Identities=23% Similarity=0.195 Sum_probs=113.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++..+ +++|+++|+|+.+++.++++++.++..+ ++++.+|+.+++. .++||+|+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~----~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~~~fDlV~ 117 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARP----ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-EEKFDVVT 117 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCC----CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-CCCccEEE
Confidence 3478999999999999999987655 5799999999999999999999998754 9999999988765 67899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-chHHHHHHHHcCCcceEEe-eeeccceeccee
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH-VPEYVRRLQELKMEDIRVS-ERVTAFMVSSHI 271 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~l~~~gf~~~~~~-~~~~~~~~~~~~ 271 (293)
++. .. ++..+++.+.++|+|||.+++..... ..+..++.+..|....++. -.+.+.+...|+
T Consensus 118 ~~~----~~------------~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (187)
T PRK00107 118 SRA----VA------------SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLDGERHL 181 (187)
T ss_pred Ecc----cc------------CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEE
Confidence 974 22 56689999999999999999875444 3455566667788755544 367777777788
Q ss_pred eeeec
Q 022698 272 VSFRK 276 (293)
Q Consensus 272 ~~~~~ 276 (293)
+..||
T Consensus 182 ~~~~~ 186 (187)
T PRK00107 182 VIIRK 186 (187)
T ss_pred EEEec
Confidence 88776
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=135.97 Aligned_cols=114 Identities=30% Similarity=0.559 Sum_probs=97.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~I 192 (293)
.+.+|||+|||+|.++..+++... ++.+++|+|+|+.+++.|+++++..+.. +++|.+.|+.+++ ++ ++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~---~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELN---PGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHST---TTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcC---CCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEE
Confidence 467999999999999999986432 2579999999999999999999998875 7999999999976 43 789999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHH
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYV 245 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 245 (293)
+++.++++.. ++..+++++.+.|++||.+++.+.....++.
T Consensus 78 ~~~~~l~~~~------------~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~ 118 (152)
T PF13847_consen 78 ISNGVLHHFP------------DPEKVLKNIIRLLKPGGILIISDPNHNDELP 118 (152)
T ss_dssp EEESTGGGTS------------HHHHHHHHHHHHEEEEEEEEEEEEEHSHHHH
T ss_pred EEcCchhhcc------------CHHHHHHHHHHHcCCCcEEEEEECChHHHHH
Confidence 9999999988 8899999999999999999997766444433
|
... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.9e-18 Score=149.19 Aligned_cols=141 Identities=22% Similarity=0.290 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+.+.+.+++......++.+|||+|||+|.++..+++..+ ..+++++|+|+.|++.++++... .+++++.+|+
T Consensus 98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~----~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~ 169 (340)
T PLN02490 98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDA 169 (340)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccH
Confidence 344455555443224567999999999999988887654 35899999999999999987643 3478899999
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------CCc
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------LHV 241 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------~~~ 241 (293)
.++++++++||+|+++.++++.+ ++...++++.++|+|||.+++++. ...
T Consensus 170 e~lp~~~~sFDvVIs~~~L~~~~------------d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~ 237 (340)
T PLN02490 170 EDLPFPTDYADRYVSAGSIEYWP------------DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKE 237 (340)
T ss_pred HhCCCCCCceeEEEEcChhhhCC------------CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCH
Confidence 98888788999999999999888 778899999999999999987532 234
Q ss_pred hHHHHHHHHcCCcceEEee
Q 022698 242 PEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~~~~ 260 (293)
+++.++++++||+.+++..
T Consensus 238 eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 238 EEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred HHHHHHHHHCCCeEEEEEE
Confidence 6788999999999988754
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-18 Score=124.13 Aligned_cols=95 Identities=42% Similarity=0.661 Sum_probs=82.8
Q ss_pred EEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhh
Q 022698 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFH 199 (293)
Q Consensus 120 LDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~ 199 (293)
||+|||+|..+..+++. + +.+++++|+|+.+++.++++....+ +.+...|+.++|+++++||+|+++..++
T Consensus 1 LdiG~G~G~~~~~l~~~-~----~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G----GASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T----TCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-c----CCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcccccccccccccccee
Confidence 89999999999999877 3 4699999999999999999876543 5699999999999999999999999999
Q ss_pred hhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 200 TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+++ ++..+++++.|+|||||++++
T Consensus 72 ~~~------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLE------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSS------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred ecc------------CHHHHHHHHHHHcCcCeEEeC
Confidence 997 999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=147.33 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=114.9
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC--CceEEEEcCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ--EYVTAREGDVR 180 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~--~~v~~~~~d~~ 180 (293)
.+.+++.+.. ....+|||+|||+|.++..+++..| ..+|+++|+|+.|++.+++|++.++.. .++++...|..
T Consensus 217 trllL~~lp~-~~~~~VLDLGCGtGvi~i~la~~~P----~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l 291 (378)
T PRK15001 217 ARFFMQHLPE-NLEGEIVDLGCGNGVIGLTLLDKNP----QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL 291 (378)
T ss_pred HHHHHHhCCc-ccCCeEEEEeccccHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccc
Confidence 4556666643 3346999999999999999998876 469999999999999999999887643 36899999886
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEee
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
+. .+.++||+|+||||||.... .......++++.+.++|+|||.++++.... -.+...|++ .|..+++..
T Consensus 292 ~~-~~~~~fDlIlsNPPfh~~~~-------~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~-l~y~~~L~~-~fg~~~~va 361 (378)
T PRK15001 292 SG-VEPFRFNAVLCNPPFHQQHA-------LTDNVAWEMFHHARRCLKINGELYIVANRH-LDYFHKLKK-IFGNCTTIA 361 (378)
T ss_pred cc-CCCCCEEEEEECcCcccCcc-------CCHHHHHHHHHHHHHhcccCCEEEEEEecC-cCHHHHHHH-HcCCceEEc
Confidence 53 34468999999999985421 011244679999999999999999975433 335566655 366777665
Q ss_pred eeccceecceeeeeec
Q 022698 261 RVTAFMVSSHIVSFRK 276 (293)
Q Consensus 261 ~~~~~~~~~~~~~~~~ 276 (293)
.-.+|. ++.++|
T Consensus 362 ~~~kf~----vl~a~k 373 (378)
T PRK15001 362 TNNKFV----VLKAVK 373 (378)
T ss_pred cCCCEE----EEEEEe
Confidence 555554 666666
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-17 Score=136.15 Aligned_cols=145 Identities=25% Similarity=0.266 Sum_probs=118.6
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcC--CCcEEEEEeCCHHHHHHHHHHHHhcCCCCc--eEE
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTG--SLGRVVGLDCKKRTTLSTLRTAKMEGVQEY--VTA 174 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~--~~~~v~~vDis~~~l~~a~~~~~~~~~~~~--v~~ 174 (293)
+.-.-+..+..+.. ..+.++||++||||.++.-+.++.+... ...+|+.+|||++|+..+++++...++... +.+
T Consensus 85 HRlWKd~~v~~L~p-~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w 163 (296)
T KOG1540|consen 85 HRLWKDMFVSKLGP-GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEW 163 (296)
T ss_pred hHHHHHHhhhccCC-CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEE
Confidence 33344445555543 4568999999999999999998876421 126999999999999999999987776654 899
Q ss_pred EEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCch-HHHHHHHHcCC
Q 022698 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP-EYVRRLQELKM 253 (293)
Q Consensus 175 ~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~l~~~gf 253 (293)
+.+|++++|+++.+||..+....+..++ ++.+.+++++|+|||||++.+.++...+ +..+.|..+++
T Consensus 164 ~~~dAE~LpFdd~s~D~yTiafGIRN~t------------h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ys 231 (296)
T KOG1540|consen 164 VEGDAEDLPFDDDSFDAYTIAFGIRNVT------------HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYS 231 (296)
T ss_pred EeCCcccCCCCCCcceeEEEecceecCC------------CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhh
Confidence 9999999999999999999999998888 8999999999999999999998887766 67777766665
Q ss_pred cce
Q 022698 254 EDI 256 (293)
Q Consensus 254 ~~~ 256 (293)
..+
T Consensus 232 f~V 234 (296)
T KOG1540|consen 232 FDV 234 (296)
T ss_pred hhh
Confidence 433
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-17 Score=143.64 Aligned_cols=132 Identities=31% Similarity=0.467 Sum_probs=111.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
+.++.+|||+|||+|..+..+++.... ..+|+++|+|+.+++.|+++....+. +++.++.+|+.++++++++||+|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~---~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGP---TGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEE
Confidence 457789999999999988777665432 35899999999999999999888776 46899999999888777899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------------CCchHHHHHH
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------------LHVPEYVRRL 248 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------------~~~~~~~~~l 248 (293)
+++.++++.+ +...+++++.++|||||++++.+. ....++.+++
T Consensus 151 i~~~v~~~~~------------d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 218 (272)
T PRK11873 151 ISNCVINLSP------------DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAML 218 (272)
T ss_pred EEcCcccCCC------------CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHH
Confidence 9999998887 778899999999999999998542 1235788899
Q ss_pred HHcCCcceEEee
Q 022698 249 QELKMEDIRVSE 260 (293)
Q Consensus 249 ~~~gf~~~~~~~ 260 (293)
+++||..+++..
T Consensus 219 ~~aGf~~v~i~~ 230 (272)
T PRK11873 219 AEAGFVDITIQP 230 (272)
T ss_pred HHCCCCceEEEe
Confidence 999999987743
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-17 Score=140.89 Aligned_cols=110 Identities=20% Similarity=0.296 Sum_probs=93.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++.+.. ++.+++++|+|+.|++.|++++...+...+++++++|+.++++ ..+|+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~--~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--~~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHH--DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVV 130 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC--CCCCEEe
Confidence 35679999999999999888775321 2579999999999999999999887766679999999988765 3599999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++.++++++ ..+...+++++++.|||||.+++.+
T Consensus 131 ~~~~l~~l~----------~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 131 LNFTLQFLE----------PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhhHHHhCC----------HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999887 2356789999999999999999865
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-18 Score=142.58 Aligned_cols=104 Identities=27% Similarity=0.424 Sum_probs=94.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||-|.++..+++. +++|+|+|+|+.+++.|+..+...++. +.+.+..++++....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~------Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL------GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC------CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEE
Confidence 6789999999999999999887 579999999999999999999999875 77888888877655589999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
..+++|++ ++..+++.+.+++||||.+++++.
T Consensus 131 mEVlEHv~------------dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 131 MEVLEHVP------------DPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred hhHHHccC------------CHHHHHHHHHHHcCCCcEEEEecc
Confidence 99999999 999999999999999999999654
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=138.77 Aligned_cols=144 Identities=18% Similarity=0.297 Sum_probs=114.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcc
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYF 189 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f 189 (293)
......+|||+|||+|.+++.++++.+ .+++++||+++.+.+.|++|.+.+++.+++++++.|+.++. ....+|
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~----~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTE----KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCC----CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccccc
Confidence 344478999999999999999998865 36999999999999999999999999999999999998864 234579
Q ss_pred cEEEecchhhhhccc----c--CcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-CCchHHHHHHHHcCCcceEEe
Q 022698 190 DVVVSAAFFHTVGKE----Y--GHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-LHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~----~--~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~l~~~gf~~~~~~ 259 (293)
|+|+|||||+..... + ..+-....-+..++++.+.++|||||.+.++.. ....++.+.+++.+|...++.
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~ 193 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQ 193 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEE
Confidence 999999999766533 0 111111112356789999999999999988653 345678999999999877664
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-17 Score=142.03 Aligned_cols=108 Identities=29% Similarity=0.331 Sum_probs=90.5
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
...+++.+. ..++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.|++.++++ +++++++|+.++
T Consensus 18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p----~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~ 84 (255)
T PRK14103 18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWP----GAVIEALDSSPEMVAAARER--------GVDARTGDVRDW 84 (255)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhC
Confidence 345566654 35668999999999999999988765 46999999999999988653 267899999876
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+ ++++||+|+|+.++++++ ++..+++++.++|||||.+++.
T Consensus 85 ~-~~~~fD~v~~~~~l~~~~------------d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 85 K-PKPDTDVVVSNAALQWVP------------EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred C-CCCCceEEEEehhhhhCC------------CHHHHHHHHHHhCCCCcEEEEE
Confidence 4 467899999999999998 8889999999999999999873
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=138.07 Aligned_cols=128 Identities=22% Similarity=0.324 Sum_probs=109.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
++|||||||+|..+..+++..+ +.+++++|+|+.+++.++++....++.+++++...|....+. .++||+|+++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~----~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP----HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-CCCCCEeehHH
Confidence 3799999999999998888764 469999999999999999999888888889999999876554 35899999999
Q ss_pred hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-----------------CchHHHHHHHHcCCcceEEe
Q 022698 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-----------------HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----------------~~~~~~~~l~~~gf~~~~~~ 259 (293)
++++++ ++..+++++.++|+|||.+++.+.. ...++.+.+.++||+.++..
T Consensus 76 ~l~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 76 VIHHIK------------DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred HHHhCC------------CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 999988 7889999999999999999986532 23468889999999988776
Q ss_pred ee
Q 022698 260 ER 261 (293)
Q Consensus 260 ~~ 261 (293)
..
T Consensus 144 ~~ 145 (224)
T smart00828 144 DA 145 (224)
T ss_pred EC
Confidence 43
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=136.39 Aligned_cols=155 Identities=30% Similarity=0.395 Sum_probs=124.0
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
..++..+. ..++.+|||+|||+|..+..++...+. ..+++++|+++.+++.+++++..++...++.+...|+.+.+
T Consensus 41 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 116 (239)
T PRK00216 41 RKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGK---TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP 116 (239)
T ss_pred HHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC
Confidence 34444443 335679999999999999999887642 36999999999999999999877655567899999998877
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC------------------------
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------ 239 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------ 239 (293)
.+.++||+|+++..+++.. ++..+++++.+.|+|||.+++++..
T Consensus 117 ~~~~~~D~I~~~~~l~~~~------------~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVP------------DIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGK 184 (239)
T ss_pred CCCCCccEEEEecccccCC------------CHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHH
Confidence 6667899999998888887 7889999999999999999875421
Q ss_pred --------------------CchHHHHHHHHcCCcceEEeeeeccceecceeeeeecC
Q 022698 240 --------------------HVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 240 --------------------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
...++.++++++||+.+++.....+.. .++.++||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~---~~~~~~~~ 239 (239)
T PRK00216 185 LISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIV---ALHVGYKP 239 (239)
T ss_pred HHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcE---EEEEEecC
Confidence 123477788999999999887776765 57777664
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=142.81 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=119.3
Q ss_pred CccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 95 AVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
+.+..+.+...++... ...++.+|||+|||+|.++..++.. +.+++|+|+++.|++.+++|++..+..+ +.+
T Consensus 163 ~~~l~~~la~~~~~l~-~~~~g~~vLDp~cGtG~~lieaa~~------~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~ 234 (329)
T TIGR01177 163 PGSMDPKLARAMVNLA-RVTEGDRVLDPFCGTGGFLIEAGLM------GAKVIGCDIDWKMVAGARINLEHYGIED-FFV 234 (329)
T ss_pred CCCCCHHHHHHHHHHh-CCCCcCEEEECCCCCCHHHHHHHHh------CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeE
Confidence 3445567777777655 3567789999999999998876543 4699999999999999999999888765 889
Q ss_pred EEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCc
Q 022698 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKME 254 (293)
Q Consensus 175 ~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~ 254 (293)
..+|+.+++..+++||+|++||||.......+. ...+....+++++.++|+|||+++++.. ...++.+.++++||
T Consensus 235 ~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~---~~~~l~~~~l~~~~r~Lk~gG~lv~~~~-~~~~~~~~~~~~g~- 309 (329)
T TIGR01177 235 KRGDATKLPLSSESVDAIATDPPYGRSTTAAGD---GLESLYERSLEEFHEVLKSEGWIVYAVP-TRIDLESLAEDAFR- 309 (329)
T ss_pred EecchhcCCcccCCCCEEEECCCCcCcccccCC---chHHHHHHHHHHHHHHccCCcEEEEEEc-CCCCHHHHHhhcCc-
Confidence 999999988767899999999998643211111 1112357899999999999999988643 33467788999999
Q ss_pred ceEEeeeecc
Q 022698 255 DIRVSERVTA 264 (293)
Q Consensus 255 ~~~~~~~~~~ 264 (293)
.+.......+
T Consensus 310 i~~~~~~~~h 319 (329)
T TIGR01177 310 VVKRFEVRVH 319 (329)
T ss_pred chheeeeeee
Confidence 6666554333
|
This family is found exclusively in the Archaea. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=136.61 Aligned_cols=153 Identities=20% Similarity=0.328 Sum_probs=116.0
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
.+.+++.+.. ....+|||+|||.|.+++.+++..| ..+++.+|+|..+++.+++|++.|++... .+...|..+.
T Consensus 147 S~lLl~~l~~-~~~~~vlDlGCG~Gvlg~~la~~~p----~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~ 220 (300)
T COG2813 147 SRLLLETLPP-DLGGKVLDLGCGYGVLGLVLAKKSP----QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEP 220 (300)
T ss_pred HHHHHHhCCc-cCCCcEEEeCCCccHHHHHHHHhCC----CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccccc
Confidence 3445566543 4455999999999999999999977 46999999999999999999999987543 6777887763
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEeeee
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSERV 262 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 262 (293)
..+ +||.|+||||+|.-.. ....-..++++...+.|++||.|.++-. ....+...|++. |..+++...-
T Consensus 221 -v~~-kfd~IisNPPfh~G~~-------v~~~~~~~~i~~A~~~L~~gGeL~iVan-~~l~y~~~L~~~-Fg~v~~la~~ 289 (300)
T COG2813 221 -VEG-KFDLIISNPPFHAGKA-------VVHSLAQEIIAAAARHLKPGGELWIVAN-RHLPYEKKLKEL-FGNVEVLAKN 289 (300)
T ss_pred -ccc-cccEEEeCCCccCCcc-------hhHHHHHHHHHHHHHhhccCCEEEEEEc-CCCChHHHHHHh-cCCEEEEEeC
Confidence 333 8999999999985430 1111234799999999999999988655 445566666655 7788888777
Q ss_pred ccceecceeeeeec
Q 022698 263 TAFMVSSHIVSFRK 276 (293)
Q Consensus 263 ~~~~~~~~~~~~~~ 276 (293)
.+|. ++.++|
T Consensus 290 ~gf~----Vl~a~k 299 (300)
T COG2813 290 GGFK----VLRAKK 299 (300)
T ss_pred CCEE----EEEEec
Confidence 7764 666554
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=140.68 Aligned_cols=138 Identities=23% Similarity=0.287 Sum_probs=107.8
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+...+.. ..+.+|||||||+|..+..++...+ ..|+|+|+|+.++..++...+..+...++.++.+|+.+++.
T Consensus 113 ~l~~~l~~-l~g~~VLDIGCG~G~~~~~la~~g~-----~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 113 RVLPHLSP-LKGRTVLDVGCGNGYHMWRMLGAGA-----KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322)
T ss_pred HHHHhhCC-CCCCEEEEeccCCcHHHHHHHHcCC-----CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence 34445543 3467999999999999988887632 37999999999987655443333323469999999998887
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------C
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-------------------------L 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------------~ 239 (293)
.++||+|+|+.+++|.. ++..+++++++.|+|||.+++.+. .
T Consensus 187 -~~~FD~V~s~~vl~H~~------------dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lp 253 (322)
T PRK15068 187 -LKAFDTVFSMGVLYHRR------------SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIP 253 (322)
T ss_pred -cCCcCEEEECChhhccC------------CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCC
Confidence 77899999999999987 889999999999999999987321 0
Q ss_pred CchHHHHHHHHcCCcceEEeee
Q 022698 240 HVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 240 ~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
...++...|+++||+.+++...
T Consensus 254 s~~~l~~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 254 SVPALKNWLERAGFKDVRIVDV 275 (322)
T ss_pred CHHHHHHHHHHcCCceEEEEeC
Confidence 2346889999999999988643
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=137.16 Aligned_cols=111 Identities=16% Similarity=0.242 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++.++. ++++++|+|+|+.|++.|+++++..+...+++++++|+.+++++ ++|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~--p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQ--PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEe
Confidence 35679999999999999999887531 15799999999999999999988765555689999999987653 589999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
++.++++++ .++...++++++++|+|||.+++.+.
T Consensus 128 ~~~~l~~~~----------~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 128 LNFTLQFLP----------PEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eecchhhCC----------HHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 999999886 33678899999999999999998753
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=131.69 Aligned_cols=104 Identities=23% Similarity=0.335 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.+++++...++ .++.+...|+.+.++ .++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~------g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~-~~~fD~I~ 100 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN------GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTF-DGEYDFIL 100 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCc-CCCcCEEE
Confidence 34679999999999999988865 46999999999999999999888776 348889999887665 45799999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
|+.++++++ ..+...+++++.++|+|||.+++
T Consensus 101 ~~~~~~~~~----------~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFLE----------AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhCC----------HHHHHHHHHHHHHHcCCCcEEEE
Confidence 999988776 33678999999999999998655
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=129.64 Aligned_cols=135 Identities=18% Similarity=0.185 Sum_probs=104.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++|...++. ++++..+|+.+.. .++||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG------KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC------CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEE
Confidence 45689999999999998888652 3899999999999999999988775 3889999987643 458999999
Q ss_pred cchhhhhccccCcch---------hhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEEe
Q 022698 195 AAFFHTVGKEYGHRT---------VEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~~ 259 (293)
|+|+++.+....... .........+++++.++|+|||.++++... ..+++.+.+++.||+...+.
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEE
Confidence 999987653221100 001123567899999999999998886543 36688999999999866554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=137.99 Aligned_cols=116 Identities=24% Similarity=0.335 Sum_probs=96.5
Q ss_pred cchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
..+....+.+++.+.. .+..+|||+|||+|..+..++.. +.+++++|+|+.|++.++++.. ...+++
T Consensus 25 ~~q~~~a~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~~D~s~~~l~~a~~~~~------~~~~~~ 91 (251)
T PRK10258 25 ELQRQSADALLAMLPQ-RKFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDA------ADHYLA 91 (251)
T ss_pred HHHHHHHHHHHHhcCc-cCCCeEEEeeCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCC------CCCEEE
Confidence 3556677777777753 35678999999999998877653 4699999999999999987743 146788
Q ss_pred cCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 177 ~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+|+..+++++++||+|+++.++++.+ ++..+++++.++|+|||.+++..
T Consensus 92 ~d~~~~~~~~~~fD~V~s~~~l~~~~------------d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 92 GDIESLPLATATFDLAWSNLAVQWCG------------NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred cCcccCcCCCCcEEEEEECchhhhcC------------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 99998888788999999999999988 88999999999999999999864
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-16 Score=138.42 Aligned_cols=152 Identities=22% Similarity=0.245 Sum_probs=111.6
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+.. ....+|||+|||+|.++..+++..+ ..+++++|+|+.|++.++++++.+++. .++...|+...
T Consensus 186 ~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p----~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~- 257 (342)
T PRK09489 186 QLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSP----KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD- 257 (342)
T ss_pred HHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-
Confidence 445555543 3345899999999999999988765 468999999999999999999998864 56777887653
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEeeeec
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSERVT 263 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~ 263 (293)
..++||+|+||+|+|.... ........+++++.+.|+|||.++++.....+ +...+.+. |..+++.....
T Consensus 258 -~~~~fDlIvsNPPFH~g~~-------~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~-y~~~l~~~-Fg~~~~la~~~ 327 (342)
T PRK09489 258 -IKGRFDMIISNPPFHDGIQ-------TSLDAAQTLIRGAVRHLNSGGELRIVANAFLP-YPDLLDET-FGSHEVLAQTG 327 (342)
T ss_pred -cCCCccEEEECCCccCCcc-------ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCC-hHHHHHHH-cCCeEEEEeCC
Confidence 2578999999999985320 01235678999999999999999886654433 33444433 66777776666
Q ss_pred cceecceeeeeecC
Q 022698 264 AFMVSSHIVSFRKP 277 (293)
Q Consensus 264 ~~~~~~~~~~~~~~ 277 (293)
+|. ++.++|.
T Consensus 328 ~f~----v~~a~~~ 337 (342)
T PRK09489 328 RFK----VYRAIMT 337 (342)
T ss_pred CEE----EEEEEcc
Confidence 654 6666553
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=157.40 Aligned_cols=173 Identities=16% Similarity=0.092 Sum_probs=123.0
Q ss_pred HhhhcccccccCccchH------HHHHHHHHhcCCC----CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCH
Q 022698 84 LFFAAGNFFYSAVPLHY------DMAQRMVGSVNDW----STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKK 153 (293)
Q Consensus 84 ~~~~~~~f~~~~~~~~~------~~~~~l~~~~~~~----~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~ 153 (293)
...+..+||+..+.+.+ +.++.+++.+... .++.+|||+|||+|++++.+++..+ ..+++|+|+|+
T Consensus 77 ~~~G~~~F~~l~~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~----~~~v~avDis~ 152 (1082)
T PLN02672 77 DYEGFRNRKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL----PSKVYGLDINP 152 (1082)
T ss_pred CCCCeEEecCCceeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC----CCEEEEEECCH
Confidence 33467778777665442 2333333332111 1245899999999999999998876 35999999999
Q ss_pred HHHHHHHHHHHhcCC---------------CCceEEEEcCCCCCCCC-CCcccEEEecchhhhhcc-----------cc-
Q 022698 154 RTTLSTLRTAKMEGV---------------QEYVTAREGDVRSLPFG-DNYFDVVVSAAFFHTVGK-----------EY- 205 (293)
Q Consensus 154 ~~l~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~~~-~~~fD~Iv~~~~~~~~~~-----------~~- 205 (293)
.+++.|++|++.+++ .++++|+++|+.+.... ..+||+|||||||..... +|
T Consensus 153 ~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~ 232 (1082)
T PLN02672 153 RAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASE 232 (1082)
T ss_pred HHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccc
Confidence 999999999988643 24799999999874311 237999999999864331 11
Q ss_pred --------Ccch------hhhHHHHHHHHHHHHHcccCCcEEEE-EcCCCchHHH-HHHHHcCCcceEEee
Q 022698 206 --------GHRT------VEAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVPEYV-RRLQELKMEDIRVSE 260 (293)
Q Consensus 206 --------~~~~------~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~-~~l~~~gf~~~~~~~ 260 (293)
..+. .....-...++.++.++|+|||++++ ++..+.+.+. +++++.||..+++++
T Consensus 233 ~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 233 EFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred ccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCeeEEee
Confidence 0111 11222345677778889999999988 7888888898 699999999887764
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-16 Score=135.44 Aligned_cols=115 Identities=28% Similarity=0.423 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.+++.+ .+.++.+|||||||.|..+..+++.. +++|+|+++|++..+.+++.++..|+.+++++...|..+
T Consensus 50 k~~~~~~~~-~l~~G~~vLDiGcGwG~~~~~~a~~~-----g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 50 KLDLLCEKL-GLKPGDRVLDIGCGWGGLAIYAAERY-----GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHTTT-T--TT-EEEEES-TTSHHHHHHHHHH-------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHh-CCCCCCEEEEeCCCccHHHHHHHHHc-----CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 445566665 37889999999999999999999886 379999999999999999999999998899999999988
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
++ .+||.|+|...+.|+. .++...+++++.++|||||++++
T Consensus 124 ~~---~~fD~IvSi~~~Ehvg----------~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 124 LP---GKFDRIVSIEMFEHVG----------RKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp ------S-SEEEEESEGGGTC----------GGGHHHHHHHHHHHSETTEEEEE
T ss_pred cC---CCCCEEEEEechhhcC----------hhHHHHHHHHHHHhcCCCcEEEE
Confidence 64 3899999999999986 23778999999999999999987
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-16 Score=127.24 Aligned_cols=136 Identities=14% Similarity=0.158 Sum_probs=105.6
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+...++..+. ..++.+|||+|||+|.++..+++..+ ..+++++|+|+.+++.+++|+..++. .++++..+|...
T Consensus 19 ~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~ 92 (187)
T PRK08287 19 VRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFP----SLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI 92 (187)
T ss_pred HHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh
Confidence 3334445543 45678999999999999999988755 46999999999999999999988876 358999988753
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCchHHHHHHHHcCCcceEEe
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
++ .++||+|+++.... ....+++.+.+.|+|||.+++.. ....++..+.+++.||..+++.
T Consensus 93 -~~-~~~~D~v~~~~~~~---------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 93 -EL-PGKADAIFIGGSGG---------------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred -hc-CcCCCEEEECCCcc---------------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEE
Confidence 23 35799999875433 23467888999999999998753 3455678889999999887764
Q ss_pred e
Q 022698 260 E 260 (293)
Q Consensus 260 ~ 260 (293)
.
T Consensus 156 ~ 156 (187)
T PRK08287 156 Q 156 (187)
T ss_pred E
Confidence 3
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-16 Score=138.29 Aligned_cols=137 Identities=19% Similarity=0.179 Sum_probs=104.1
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.++..+. ..++.+|||+|||+|..+..++...+ ..|+|+|+|+.|+..++...+..+...++.+...++.+++.
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~-----~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~ 185 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGA-----KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE 185 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCC-----CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC
Confidence 3444443 24567999999999999887776522 37999999999988765433322223458888899888764
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------C
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-------------------------L 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------------~ 239 (293)
..+||+|+|+.+++|.+ ++..++++++++|+|||.|++.+. .
T Consensus 186 -~~~FD~V~s~gvL~H~~------------dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flp 252 (314)
T TIGR00452 186 -LYAFDTVFSMGVLYHRK------------SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIP 252 (314)
T ss_pred -CCCcCEEEEcchhhccC------------CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCC
Confidence 34799999999999998 889999999999999999987321 0
Q ss_pred CchHHHHHHHHcCCcceEEee
Q 022698 240 HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 ~~~~~~~~l~~~gf~~~~~~~ 260 (293)
...++...++++||+.+++..
T Consensus 253 S~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 253 SVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred CHHHHHHHHHHCCCeEEEEEe
Confidence 234567889999999998764
|
Known examples to date are restricted to the proteobacteria. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-17 Score=119.82 Aligned_cols=100 Identities=34% Similarity=0.605 Sum_probs=81.8
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec-ch
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA-AF 197 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~-~~ 197 (293)
|||+|||+|..+..+++.+ ..++..+++++|+|+.|++.++++....+. ++++++.|+.+++..+++||+|+++ .+
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHh-hhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999999887 323346999999999999999999987665 4899999999987777899999994 55
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCc
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 231 (293)
++++. +++...+++++.++|+|||
T Consensus 78 ~~~~~----------~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLS----------PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSS----------HHHHHHHHHHHHHTEEEEE
T ss_pred cCCCC----------HHHHHHHHHHHHHHhCCCC
Confidence 88877 4578899999999999998
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.70 E-value=7e-16 Score=126.25 Aligned_cols=124 Identities=20% Similarity=0.228 Sum_probs=96.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||+|.++..++...+ ..+|+++|+|+.+++.++++++.++.. +++++++|+.+++ ..++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~----~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP----ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-HEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC----CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-ccCCccEEEe
Confidence 367999999999999998876544 468999999999999999999888874 5999999998864 3578999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-chHHHHHHHH---cCCcceEEee
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH-VPEYVRRLQE---LKMEDIRVSE 260 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~l~~---~gf~~~~~~~ 260 (293)
+. ++ +...+++.+.++|+|||.+++..... ..+.....+. .||+.+....
T Consensus 116 ~~-~~---------------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 116 RA-LA---------------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred hh-hh---------------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccc
Confidence 86 32 34467888899999999998865433 3333333333 6888776654
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=127.99 Aligned_cols=145 Identities=23% Similarity=0.242 Sum_probs=111.7
Q ss_pred HHHHHHHhcCC-CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 102 MAQRMVGSVND-WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 102 ~~~~l~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
+.+.+++.+.. ..++.+|||+|||+|.++..+++. +.+++|+|+|+.|++.|++++...+..+++.+.+.|+.
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 114 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 44445555442 345789999999999999988764 35999999999999999999887766557999999998
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC----------------------
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL---------------------- 238 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---------------------- 238 (293)
+.+ ++||+|++..++++.+ ..+...+++++.+.+++++.+.+...
T Consensus 115 ~~~---~~fD~ii~~~~l~~~~----------~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (219)
T TIGR02021 115 SLC---GEFDIVVCMDVLIHYP----------ASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATS 181 (219)
T ss_pred hCC---CCcCEEEEhhHHHhCC----------HHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccc
Confidence 764 6899999998887775 23677889999999988777665321
Q ss_pred ---CCchHHHHHHHHcCCcceEEeeeeccc
Q 022698 239 ---LHVPEYVRRLQELKMEDIRVSERVTAF 265 (293)
Q Consensus 239 ---~~~~~~~~~l~~~gf~~~~~~~~~~~~ 265 (293)
...+++.++++++||+.+.......++
T Consensus 182 ~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~ 211 (219)
T TIGR02021 182 AYLHPMTDLERALGELGWKIVREGLVSTGF 211 (219)
T ss_pred eEEecHHHHHHHHHHcCceeeeeecccccc
Confidence 123568888999999988776555443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=129.22 Aligned_cols=141 Identities=30% Similarity=0.382 Sum_probs=111.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+++.+. ..++.+|||+|||+|..+..++..++ +.++++++|+|+.+++.++++.... ..++.+...|+..
T Consensus 7 ~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~---~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~ 80 (241)
T PRK08317 7 YRARTFELLA-VQPGDRVLDVGCGPGNDARELARRVG---PEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcC---CCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEeccccc
Confidence 3344555443 56778999999999999999988762 1469999999999999998883322 3568999999988
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------------
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------------- 239 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 239 (293)
.++++++||+|+++.++++++ ++..+++++.++|+|||.+++.+..
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLE------------DPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWS 148 (241)
T ss_pred CCCCCCCceEEEEechhhccC------------CHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHH
Confidence 777778999999999999988 8889999999999999999875421
Q ss_pred -------CchHHHHHHHHcCCcceEEee
Q 022698 240 -------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 -------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
....+.+.++++||..++...
T Consensus 149 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 176 (241)
T PRK08317 149 DHFADPWLGRRLPGLFREAGLTDIEVEP 176 (241)
T ss_pred hcCCCCcHHHHHHHHHHHcCCCceeEEE
Confidence 012467788999999876644
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-16 Score=131.37 Aligned_cols=114 Identities=27% Similarity=0.400 Sum_probs=100.3
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+.+.+ ++.++.+|||||||.|..++.++++. +.+|+|+++|+++.+.+++.+...|+..++++...|..++.
T Consensus 63 ~~~~kl-~L~~G~~lLDiGCGWG~l~~~aA~~y-----~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~- 135 (283)
T COG2230 63 LILEKL-GLKPGMTLLDIGCGWGGLAIYAAEEY-----GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE- 135 (283)
T ss_pred HHHHhc-CCCCCCEEEEeCCChhHHHHHHHHHc-----CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-
Confidence 344444 47899999999999999999999886 36999999999999999999999999889999999999864
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++||.|||...++|+.. ++...+++.+.++|+|||.+++..
T Consensus 136 --e~fDrIvSvgmfEhvg~----------~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 136 --EPFDRIVSVGMFEHVGK----------ENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred --cccceeeehhhHHHhCc----------ccHHHHHHHHHhhcCCCceEEEEE
Confidence 45999999999999983 378999999999999999998843
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-16 Score=128.30 Aligned_cols=104 Identities=19% Similarity=0.296 Sum_probs=86.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.+++++..+++. +.+...|+...++ +++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~------g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~-~~~fD~I~ 99 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLA------GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAAL-NEDYDFIF 99 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccc-cCCCCEEE
Confidence 34579999999999999998864 469999999999999999998877764 7788888766554 35799999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
++.++++++ ..+...+++++.++|+|||.++++
T Consensus 100 ~~~~~~~~~----------~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 100 STVVFMFLQ----------AGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EecccccCC----------HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 999998875 236778999999999999996664
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-15 Score=126.36 Aligned_cols=149 Identities=28% Similarity=0.367 Sum_probs=116.1
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+++.+. ..++.+|||+|||+|..+..+++..+. ..+++++|+++.+++.++++.. ...++.+..+|+.+.++
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~---~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~ 102 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPD---RGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF 102 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCC---CceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC
Confidence 3444443 236789999999999999999887652 2589999999999999988865 23458999999988776
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------------------
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------- 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------- 239 (293)
..++||+|+++..+++.+ ++..+++++.+.|+|||++++.+..
T Consensus 103 ~~~~~D~i~~~~~~~~~~------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (223)
T TIGR01934 103 EDNSFDAVTIAFGLRNVT------------DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGL 170 (223)
T ss_pred CCCcEEEEEEeeeeCCcc------------cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhh
Confidence 667899999998888877 7889999999999999999875421
Q ss_pred -------------------CchHHHHHHHHcCCcceEEeeeeccceecceeeeee
Q 022698 240 -------------------HVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFR 275 (293)
Q Consensus 240 -------------------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~ 275 (293)
..+++.+.+.++||+.+++.+...+.. .++.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~---~~~~~~ 222 (223)
T TIGR01934 171 ISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVA---AIHVGK 222 (223)
T ss_pred hcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeeccee---eEEEec
Confidence 123577788999999888876655533 445444
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-15 Score=123.12 Aligned_cols=144 Identities=24% Similarity=0.298 Sum_probs=107.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEEcCCCCCCCCCCcccEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY-VTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~I 192 (293)
.++.+|||+|||+|.++..++.. +.+++++|+|+.+++.+++++..++..++ +.++..|+.+. +...+||+|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEE
Confidence 45678999999999999988876 35999999999999999999988776544 88899998763 445589999
Q ss_pred EecchhhhhccccC---------cchhhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCchHHHHHHHHcCCcceEEeee
Q 022698 193 VSAAFFHTVGKEYG---------HRTVEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 193 v~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
++|+++....+... ..+.........+++++.++|+|||.+++.. ....+++.+.+.+.||+.......
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeec
Confidence 99998865321100 0000112245678999999999999887743 334577899999999987766554
Q ss_pred ecc
Q 022698 262 VTA 264 (293)
Q Consensus 262 ~~~ 264 (293)
...
T Consensus 175 ~~~ 177 (188)
T PRK14968 175 KFP 177 (188)
T ss_pred ccC
Confidence 333
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.1e-16 Score=131.08 Aligned_cols=141 Identities=28% Similarity=0.420 Sum_probs=108.0
Q ss_pred chHHHHHHHHHhcCCC--CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q 022698 98 LHYDMAQRMVGSVNDW--STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~ 175 (293)
.+..+...+++.+... ..+.+|||+|||+|..+..+++..+ ..+++++|+|+.+++.++++.. +++.++
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~----~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~ 85 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFP----QAEFIALDISAGMLAQAKTKLS-----ENVQFI 85 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCC----CCcEEEEeChHHHHHHHHHhcC-----CCCeEE
Confidence 3444555555554432 2346899999999999999988765 4589999999999988887654 247899
Q ss_pred EcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------
Q 022698 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------- 239 (293)
Q Consensus 176 ~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------- 239 (293)
.+|+.+.++++++||+|+++.++++.. ++..+++++.++|+|||.+++....
T Consensus 86 ~~d~~~~~~~~~~fD~vi~~~~l~~~~------------~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~ 153 (240)
T TIGR02072 86 CGDAEKLPLEDSSFDLIVSNLALQWCD------------DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGL 153 (240)
T ss_pred ecchhhCCCCCCceeEEEEhhhhhhcc------------CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhcc
Confidence 999998877778999999999999987 8889999999999999999985432
Q ss_pred ---CchHHHHHHHHcCCcceEEee
Q 022698 240 ---HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 ---~~~~~~~~l~~~gf~~~~~~~ 260 (293)
...++.+.+.+. |..+....
T Consensus 154 ~~~~~~~~~~~l~~~-f~~~~~~~ 176 (240)
T TIGR02072 154 RYLSLDELKALLKNS-FELLTLEE 176 (240)
T ss_pred CCCCHHHHHHHHHHh-cCCcEEEE
Confidence 123456666666 77665543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-16 Score=125.04 Aligned_cols=97 Identities=32% Similarity=0.482 Sum_probs=77.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.+|||+|||+|.++..+++. +.+++++|+|+.+++. .++.....+....+.++++||+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i 82 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR------GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLI 82 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT------TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhH
Confidence 456789999999999998888554 3499999999998877 11233333333333457899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+|+.+++|++ ++..+++++.++|||||.+++...
T Consensus 83 ~~~~~l~~~~------------d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 83 ICNDVLEHLP------------DPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp EEESSGGGSS------------HHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred hhHHHHhhcc------------cHHHHHHHHHHhcCCCCEEEEEEc
Confidence 9999999999 999999999999999999998654
|
... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-15 Score=132.22 Aligned_cols=137 Identities=17% Similarity=0.207 Sum_probs=109.0
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.. ...+..+|||||||+|.++..+++..| ..+++++|. +.+++.++++++..++.++++++.+|+.+.+
T Consensus 139 ~~l~~~~-~~~~~~~vlDiG~G~G~~~~~~~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 139 QLLLEEA-KLDGVKKMIDVGGGIGDISAAMLKHFP----ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHHHHc-CCCCCCEEEEeCCchhHHHHHHHHHCC----CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 3344443 345678999999999999999999876 468999997 7899999999999988889999999998655
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-----------------------
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH----------------------- 240 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 240 (293)
++ .+|+|++...+|... .+....+++++++.|+|||++++.+...
T Consensus 213 ~~--~~D~v~~~~~lh~~~----------~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (306)
T TIGR02716 213 YP--EADAVLFCRILYSAN----------EQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFS 280 (306)
T ss_pred CC--CCCEEEeEhhhhcCC----------hHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccc
Confidence 43 379999888888775 2245689999999999999999865310
Q ss_pred ------chHHHHHHHHcCCcceEE
Q 022698 241 ------VPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 241 ------~~~~~~~l~~~gf~~~~~ 258 (293)
.+++.++|+++||+.+++
T Consensus 281 ~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 281 VLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred cccCCCHHHHHHHHHHcCCCeeEe
Confidence 135778888888887764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-16 Score=118.68 Aligned_cols=112 Identities=30% Similarity=0.442 Sum_probs=88.9
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEEEe
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVVVS 194 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~Iv~ 194 (293)
.+|||+|||+|.++..+++.. ..+++++|+++.+++.++.++..++..++++++++|..+.. .+.++||+|++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-----~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-----AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-----TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC-----CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEE
Confidence 589999999999999998874 26999999999999999999999988788999999998764 56789999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|+||......... ..+....+++++.++|+|||.++++.
T Consensus 77 npP~~~~~~~~~~----~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 77 NPPYGPRSGDKAA----LRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp --STTSBTT--------GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccccccchh----hHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9999754211000 01145689999999999999998753
|
... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.4e-16 Score=133.56 Aligned_cols=111 Identities=20% Similarity=0.349 Sum_probs=92.6
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.++..+. ..++.+|||+|||+|.++..+++..+ +.+++|+|+|+.+++.++++. +++.+...|+.+
T Consensus 19 ~~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~----~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~ 87 (258)
T PRK01683 19 PARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWP----AARITGIDSSPAMLAEARSRL------PDCQFVEADIAS 87 (258)
T ss_pred HHHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhc
Confidence 4555666553 35678999999999999999987765 469999999999999998774 237889999887
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+. +.++||+|+++.++++++ ++..+++++.++|||||.+++.
T Consensus 88 ~~-~~~~fD~v~~~~~l~~~~------------d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 88 WQ-PPQALDLIFANASLQWLP------------DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred cC-CCCCccEEEEccChhhCC------------CHHHHHHHHHHhcCCCcEEEEE
Confidence 54 356899999999999988 7889999999999999999874
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-15 Score=123.13 Aligned_cols=134 Identities=19% Similarity=0.286 Sum_probs=103.1
Q ss_pred HHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-CCC
Q 022698 107 VGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-PFG 185 (293)
Q Consensus 107 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 185 (293)
+..+ ...++.+|||+|||+|.++..+++..+. ..+++++|+|+.+++.+++|++.+++.+++.++.+|..+. +..
T Consensus 33 l~~l-~~~~~~~vlDlG~GtG~~s~~~a~~~~~---~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 33 LSKL-RLRKGDMILDIGCGTGSVTVEASLLVGE---TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HHHc-CCCCcCEEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc
Confidence 4444 3567889999999999999998876532 3589999999999999999999888656799999998763 222
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCchHHHHHHHHcCCcceEEee
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
.++||.|+++.. .. ++..+++.+.+.|+|||.+++.. .....+..+.+++.|| ..++.+
T Consensus 109 ~~~~D~V~~~~~---~~------------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~~ 169 (198)
T PRK00377 109 NEKFDRIFIGGG---SE------------KLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEITE 169 (198)
T ss_pred CCCCCEEEECCC---cc------------cHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEEE
Confidence 368999998642 12 55688999999999999998732 2334578888889999 445443
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-15 Score=125.39 Aligned_cols=141 Identities=26% Similarity=0.296 Sum_probs=104.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.+|||+|||+|.++..+++. + ..+++++|+|+.+++.+++|+..++. ++.++..|+.+. +++++||+|
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~----~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~V 105 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-G----AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVV 105 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEE
Confidence 356679999999999999888764 2 24899999999999999999988775 378889998763 446789999
Q ss_pred Eecchhhhhcccc--Cc-------chhhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCchHHHHHHHHcCCcceEEeee
Q 022698 193 VSAAFFHTVGKEY--GH-------RTVEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 193 v~~~~~~~~~~~~--~~-------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
++|+||....... .. ...........+++++.++|||||+++++. .....++.+.+++.||........
T Consensus 106 i~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 185 (223)
T PRK14967 106 VSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVVASQ 185 (223)
T ss_pred EECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEEEee
Confidence 9999986543210 00 000111235678899999999999998843 335568889999999875544433
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-15 Score=128.87 Aligned_cols=139 Identities=27% Similarity=0.400 Sum_probs=105.0
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
.+.-..++... .++.+|||+|||||.++++.++.-. .+++|+|++|.+++.++.|+..|++...++....+..
T Consensus 150 ~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA-----~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~ 222 (300)
T COG2264 150 SLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGA-----KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL 222 (300)
T ss_pred HHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCC-----ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch
Confidence 34444454443 3678999999999999998887632 5799999999999999999999997643333334433
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEE
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~ 258 (293)
..+ ..++||+||+|-.-. -...+...+.+.|||||++++++.. +.+.+.+.+.++||+.++.
T Consensus 223 ~~~-~~~~~DvIVANILA~---------------vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 223 EVP-ENGPFDVIVANILAE---------------VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred hhc-ccCcccEEEehhhHH---------------HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 322 346899999995322 3457888999999999999997754 4566888888999999888
Q ss_pred eeee
Q 022698 259 SERV 262 (293)
Q Consensus 259 ~~~~ 262 (293)
..+-
T Consensus 287 ~~~~ 290 (300)
T COG2264 287 LERE 290 (300)
T ss_pred EecC
Confidence 7653
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-15 Score=124.69 Aligned_cols=117 Identities=22% Similarity=0.238 Sum_probs=93.9
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. ..++.+|||+|||+|..+..+++..+. ..+|+++|+++.+++.+++|+..++..+++++..+
T Consensus 56 ~~p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~---~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~ 131 (205)
T PRK13944 56 SAPHMVAMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIER---RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG 131 (205)
T ss_pred chHHHHHHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 34556666776664 456789999999999999888877642 35899999999999999999998887667999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|..+.....++||+|+++.+..+++ +++.+.|+|||++++.
T Consensus 132 d~~~~~~~~~~fD~Ii~~~~~~~~~------------------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 132 DGKRGLEKHAPFDAIIVTAAASTIP------------------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CcccCCccCCCccEEEEccCcchhh------------------HHHHHhcCcCcEEEEE
Confidence 9987543456899999998776554 3577899999999874
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5e-16 Score=129.64 Aligned_cols=101 Identities=28% Similarity=0.410 Sum_probs=86.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-----ceEEEEcCCCCCCCCCCccc
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE-----YVTAREGDVRSLPFGDNYFD 190 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~fD 190 (293)
+.+|||+|||.|-++..|++. ++.|+|+|++++|++.|++......... ++++...|++.. .++||
T Consensus 90 g~~ilDvGCGgGLLSepLArl------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhh------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccc
Confidence 367999999999999999987 5799999999999999999965554332 367777777765 35699
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.|+|..+++|+. ++..+++.+.+.|||||.+++.+
T Consensus 161 aVvcsevleHV~------------dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 161 AVVCSEVLEHVK------------DPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eeeeHHHHHHHh------------CHHHHHHHHHHHhCCCCceEeee
Confidence 999999999998 99999999999999999999854
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=123.19 Aligned_cols=107 Identities=21% Similarity=0.358 Sum_probs=92.8
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.++.++. ..+..+|.|+|||+|..+..|+++.| .+.++|+|-|++|++.|+++. .+++|..+|+.+..
T Consensus 21 dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP----~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~- 88 (257)
T COG4106 21 DLLARVP-LERPRRVVDLGCGPGNSTELLARRWP----DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK- 88 (257)
T ss_pred HHHhhCC-ccccceeeecCCCCCHHHHHHHHhCC----CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcC-
Confidence 3444553 45667999999999999999999998 689999999999999987663 44899999999874
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
++.++|++++|.++++++ +-..++.++...|.|||+|.+
T Consensus 89 p~~~~dllfaNAvlqWlp------------dH~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 89 PEQPTDLLFANAVLQWLP------------DHPELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred CCCccchhhhhhhhhhcc------------ccHHHHHHHHHhhCCCceEEE
Confidence 467899999999999999 888999999999999999988
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.1e-16 Score=128.33 Aligned_cols=132 Identities=20% Similarity=0.151 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC-CCCC--CCCCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV-RSLP--FGDNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~fD~ 191 (293)
+..+|||+|||+|..+..+++..+ +.+++++|+|+.+++.+++++..++. .++.++++|+ ..++ +++++||+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p----~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP----DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC----CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccce
Confidence 467899999999999999988765 46899999999999999999988776 5699999999 6554 55678999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcc
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMED 255 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~ 255 (293)
|+++.+..+.... +.. .......+++++.++|||||.+++.... ...+..+.+++.|+..
T Consensus 115 V~~~~~~p~~~~~-~~~---~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 115 IYLNFPDPWPKKR-HHK---RRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFL 176 (202)
T ss_pred EEEECCCCCCCcc-ccc---cccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccc
Confidence 9997653322100 000 0002467899999999999999986432 2456788888888753
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-15 Score=117.56 Aligned_cols=155 Identities=18% Similarity=0.284 Sum_probs=116.4
Q ss_pred chHHHHHHHHHhcC--CCCCC-CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 98 LHYDMAQRMVGSVN--DWSTV-KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 98 ~~~~~~~~l~~~~~--~~~~~-~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
..+.++.++.+... ++... .+|||+|||+|.+...|++. +.....+|+|.|+.+++.|+..+++.+..+.++|
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~e----gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f 122 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKE----GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRF 122 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHh----cCCCCccccccCHHHHHHHHHHHHhcCCCcceeE
Confidence 45667777777654 12233 39999999999998877765 2235699999999999999999999999888999
Q ss_pred EEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-CchHHHHHHHHcCC
Q 022698 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-HVPEYVRRLQELKM 253 (293)
Q Consensus 175 ~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~l~~~gf 253 (293)
.+.|+.+..+..++||+|.--..+..+.-.+.. ....+..++..+.++|+|||++++..+. +..+..+.+...||
T Consensus 123 ~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~----~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 123 QQLDITDPDFLSGQFDLVLDKGTLDAISLSPDG----PVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNF 198 (227)
T ss_pred EEeeccCCcccccceeEEeecCceeeeecCCCC----cccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCe
Confidence 999999866667889999876666544321111 1112355778888999999999996665 45678999999998
Q ss_pred cceEEee
Q 022698 254 EDIRVSE 260 (293)
Q Consensus 254 ~~~~~~~ 260 (293)
+.....+
T Consensus 199 ~~~~tvp 205 (227)
T KOG1271|consen 199 EYLSTVP 205 (227)
T ss_pred EEEEeec
Confidence 8766654
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=8e-15 Score=118.48 Aligned_cols=105 Identities=23% Similarity=0.356 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
..-.++||+|||.|.++..|+... .+++++|+|+.+++.|+++.... ++|++.+.|+.+. .+.++||+||
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC------d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~-~P~~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC------DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF-WPEGRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE------EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEE
T ss_pred cccceeEecCCCccHHHHHHHHhh------CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC-CCCCCeeEEE
Confidence 345689999999999999998774 49999999999999999998754 4699999999774 4678999999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+..+++++.+ .++...++.++...|+|||.|++..
T Consensus 112 ~SEVlYYL~~---------~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 112 LSEVLYYLDD---------AEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EES-GGGSSS---------HHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EehHhHcCCC---------HHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999861 2367789999999999999999944
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-15 Score=130.02 Aligned_cols=103 Identities=19% Similarity=0.275 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++++.+++ ++++...|+...++ +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~------g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL------GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEE
Confidence 3459999999999999988864 46999999999999999999988876 48888889877544 678999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+.++++++ .++...+++++.++|+|||.++++
T Consensus 191 ~~vl~~l~----------~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 191 TVVLMFLN----------RERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred cchhhhCC----------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99998876 336788999999999999997664
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=123.22 Aligned_cols=91 Identities=30% Similarity=0.378 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||+|..+..+++.. +.+|+|+|+|++|++.+++. ..++++|+.++|+++++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-----~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-----KYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-----CCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEe
Confidence 36799999999999998887764 24899999999999998753 13568899999998999999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 231 (293)
+..+++.+ ++...+++++|+|||.+
T Consensus 117 ~~~l~~~~------------d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 117 SFALHASD------------NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred cChhhccC------------CHHHHHHHHHHHhcCce
Confidence 99999888 88999999999999954
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-15 Score=130.56 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=86.8
Q ss_pred CCCeEEEEcCCCChHHH----HHHHHhhhc-CCCcEEEEEeCCHHHHHHHHHHHH----hc-------------------
Q 022698 115 TVKTALDIGCGRGILLN----AVATQFKKT-GSLGRVVGLDCKKRTTLSTLRTAK----ME------------------- 166 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~----~l~~~~~~~-~~~~~v~~vDis~~~l~~a~~~~~----~~------------------- 166 (293)
++.+|+|+|||+|..+. .+++..+.. ..+.+|+|+|+|+.|++.|++..- ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999998544 444443321 124699999999999999997531 00
Q ss_pred ---CCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 167 ---GVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 167 ---~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.+..++.|.+.|+.+.+.+.++||+|+|.+++++++ ..+...+++++++.|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~----------~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD----------EPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC----------HHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 112468999999998766678999999999999987 3366789999999999999999854
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-14 Score=121.55 Aligned_cols=139 Identities=19% Similarity=0.209 Sum_probs=101.7
Q ss_pred HHHHHHHHHhc--CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 100 YDMAQRMVGSV--NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 100 ~~~~~~l~~~~--~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+...++..+ ..+.++.+|||+|||+|.++..+++..+ ..+|+++|+|+.|++.+.++++.. .++.++.+
T Consensus 55 ~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~----~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~ 127 (226)
T PRK04266 55 SKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE----EGVVYAVEFAPRPMRELLEVAEER---KNIIPILA 127 (226)
T ss_pred cchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC----CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEEC
Confidence 34455555433 3466788999999999999999988764 248999999999999888776643 45888999
Q ss_pred CCCCC----CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE------EcCCCch-----
Q 022698 178 DVRSL----PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV------WDLLHVP----- 242 (293)
Q Consensus 178 d~~~~----~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~------~~~~~~~----- 242 (293)
|+.+. ++ ..+||+|++..+. + .....+++++.++|||||.+++ ++....+
T Consensus 128 D~~~~~~~~~l-~~~~D~i~~d~~~---p-----------~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~ 192 (226)
T PRK04266 128 DARKPERYAHV-VEKVDVIYQDVAQ---P-----------NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFK 192 (226)
T ss_pred CCCCcchhhhc-cccCCEEEECCCC---h-----------hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHH
Confidence 98652 12 2569999975321 1 1234578999999999999999 5544332
Q ss_pred HHHHHHHHcCCcceEEee
Q 022698 243 EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 243 ~~~~~l~~~gf~~~~~~~ 260 (293)
+..+.++++||+.++.+.
T Consensus 193 ~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 193 EEIRKLEEGGFEILEVVD 210 (226)
T ss_pred HHHHHHHHcCCeEEEEEc
Confidence 356888999999887765
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=124.55 Aligned_cols=120 Identities=29% Similarity=0.404 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++.. ..+++|+|+|+.+++.|++|+..+++..++.+..+| .+||+|+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-----~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-----AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-----CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEE
Confidence 467899999999999887665431 236999999999999999999988864444433222 2799999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEEeee
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
+|...+ ....+++++.++|||||.+++.+.. ..+++.+.+.+.||+.++..++
T Consensus 185 ani~~~---------------~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 185 ANILAN---------------PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER 239 (250)
T ss_pred EcCcHH---------------HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe
Confidence 985432 3457889999999999999997643 4567888899999998877654
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-15 Score=124.57 Aligned_cols=140 Identities=23% Similarity=0.249 Sum_probs=102.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---CCCCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---FGDNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~ 191 (293)
...+|||||||+|.++..+++..| ...++|+|+|+.+++.|++++...++. +++++++|+.+++ ++++++|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p----~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP----DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC----CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeE
Confidence 345899999999999999998876 469999999999999999999888774 7999999997643 34568999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHcC-CcceEEeeeec
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELK-MEDIRVSERVT 263 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~g-f~~~~~~~~~~ 263 (293)
|+++.|-.+... .+.+- .-....++++++++|||||.+++..... ..++.+.+.+.+ |+.+....++.
T Consensus 91 v~~~~pdpw~k~-~h~~~---r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 161 (194)
T TIGR00091 91 VFLNFPDPWPKK-RHNKR---RITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTSKSTDLN 161 (194)
T ss_pred EEEECCCcCCCC-Ccccc---ccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEecccccccC
Confidence 999876443221 00000 0012468999999999999998854322 344666777666 77665444443
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-16 Score=117.56 Aligned_cols=97 Identities=31% Similarity=0.414 Sum_probs=65.4
Q ss_pred EEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEEEecch
Q 022698 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVVVSAAF 197 (293)
Q Consensus 120 LDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~Iv~~~~ 197 (293)
||+|||+|..+..+++.++ ..+++++|+|+.|++.++++....+.. +......+..+.. ...++||+|+++.+
T Consensus 1 LdiGcG~G~~~~~l~~~~~----~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP----DARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-----EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhh
Confidence 7999999999999998875 579999999999998888888776532 2333333333321 12258999999999
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEE
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVG 233 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 233 (293)
+++++ ++..++++++++|+|||+|
T Consensus 76 l~~l~------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 LHHLE------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TS--S-------------HHHHHHHHTTT-TSS-EE
T ss_pred Hhhhh------------hHHHHHHHHHHHcCCCCCC
Confidence 99997 8999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-14 Score=114.64 Aligned_cols=138 Identities=21% Similarity=0.179 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+++....+..+ .+.++.+++|||||||.+++.++...| ..+++++|-++++++..++|+++.+. +++.++.+|+
T Consensus 20 ~EIRal~ls~L-~~~~g~~l~DIGaGtGsi~iE~a~~~p----~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~A 93 (187)
T COG2242 20 EEIRALTLSKL-RPRPGDRLWDIGAGTGSITIEWALAGP----SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDA 93 (187)
T ss_pred HHHHHHHHHhh-CCCCCCEEEEeCCCccHHHHHHHHhCC----CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccc
Confidence 34444445555 467888999999999999999995544 57999999999999999999999995 7799999998
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE--EcCCCchHHHHHHHHcCC-cce
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV--WDLLHVPEYVRRLQELKM-EDI 256 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~--~~~~~~~~~~~~l~~~gf-~~~ 256 (293)
-+.-....+||.|+.... . +...+++.+...|||||++++ +.........+.+++.|+ +.+
T Consensus 94 p~~L~~~~~~daiFIGGg-~---------------~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 94 PEALPDLPSPDAIFIGGG-G---------------NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred hHhhcCCCCCCEEEECCC-C---------------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 763212237999998765 2 456899999999999999988 333334457778889999 544
Q ss_pred EEe
Q 022698 257 RVS 259 (293)
Q Consensus 257 ~~~ 259 (293)
++.
T Consensus 158 ~v~ 160 (187)
T COG2242 158 QVQ 160 (187)
T ss_pred EEE
Confidence 443
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-14 Score=123.86 Aligned_cols=149 Identities=16% Similarity=0.144 Sum_probs=105.9
Q ss_pred CCCeEEEEcCCCChHHHHHHH--HhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVAT--QFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-EGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~--~~~~~~~~~~v~~vDis~~~l~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
++.+|+|||||.|.++..++. .++ +++++++|+++++++.|++++.. .++.++++|..+|+.+.....++||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p----~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP----TTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCE
Confidence 678999999998866544433 334 56999999999999999999964 78888899999999885433478999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc-----hHHHHHHHHcCCcceEEeeeeccce
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV-----PEYVRRLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~l~~~gf~~~~~~~~~~~~~ 266 (293)
|++. +++++. ..++.++++++++.|+|||.+++-..... +.+... .-.||+......- .+-
T Consensus 199 VF~~-ALi~~d----------k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~-~~~gf~~~~~~~P-~~~- 264 (296)
T PLN03075 199 VFLA-ALVGMD----------KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPC-DLRGFEVLSVFHP-TDE- 264 (296)
T ss_pred EEEe-cccccc----------cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChh-hCCCeEEEEEECC-CCC-
Confidence 9999 766653 22789999999999999999998432111 111111 1128886655432 221
Q ss_pred ecceeeeeecCCCCC
Q 022698 267 VSSHIVSFRKPSQHY 281 (293)
Q Consensus 267 ~~~~~~~~~~~~~~~ 281 (293)
+-..++.+||+....
T Consensus 265 v~Nsvi~~r~~~~~~ 279 (296)
T PLN03075 265 VINSVIIARKPGGPV 279 (296)
T ss_pred ceeeEEEEEeecCCc
Confidence 233578888876544
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=122.96 Aligned_cols=106 Identities=28% Similarity=0.357 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++..++.+++.+++|+|+|+.|++.++++....+ +.+...+...++..+++||+|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccCCCccEEE
Confidence 456799999999999999988776655556799999999999999988765433 5566666666555567999999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
++.+++|++ +++...+++++.++++ |.+++
T Consensus 135 ~~~~lhh~~----------d~~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 135 SNHFLHHLD----------DAEVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred ECCeeecCC----------hHHHHHHHHHHHHhcC--eeEEE
Confidence 999999997 2235679999999998 44444
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=109.91 Aligned_cols=114 Identities=22% Similarity=0.184 Sum_probs=89.2
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+...+++.+. ..++.+|||+|||+|..+..+++..+ ..+++++|+|+.+++.++++++..+.. ++.++..|+..
T Consensus 7 ~~~~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 80 (124)
T TIGR02469 7 VRALTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVP----NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPE 80 (124)
T ss_pred HHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCC----CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccc
Confidence 3444555553 44567999999999999999988765 369999999999999999998887753 58888888764
Q ss_pred C-CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 182 L-PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 182 ~-~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
. +...++||.|++..... ....+++.+.+.|+|||.+++.
T Consensus 81 ~~~~~~~~~D~v~~~~~~~---------------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 81 ALEDSLPEPDRVFIGGSGG---------------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cChhhcCCCCEEEECCcch---------------hHHHHHHHHHHHcCCCCEEEEE
Confidence 2 22246899999975432 3458899999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.9e-15 Score=127.63 Aligned_cols=135 Identities=22% Similarity=0.351 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
.+.-.+++... .++.+|||+|||||.+++..++.- ..+|+|+|+++.+++.|++|++.|++.+++.+. ...
T Consensus 149 ~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klG-----A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~ 219 (295)
T PF06325_consen 149 RLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLG-----AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSE 219 (295)
T ss_dssp HHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTT-----BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTS
T ss_pred HHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcC-----CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eec
Confidence 34444444442 456799999999999998887652 248999999999999999999999998766553 222
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEE
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~ 258 (293)
+ ...++||+|++|-... -...+...+.++|+|||.+++++.. +.+++.+.+++ ||..++.
T Consensus 220 ~--~~~~~~dlvvANI~~~---------------vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 220 D--LVEGKFDLVVANILAD---------------VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp C--TCCS-EEEEEEES-HH---------------HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEE
T ss_pred c--cccccCCEEEECCCHH---------------HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEE
Confidence 2 2348899999996544 3346778889999999999997654 44568888866 9998776
Q ss_pred eeee
Q 022698 259 SERV 262 (293)
Q Consensus 259 ~~~~ 262 (293)
..+-
T Consensus 282 ~~~~ 285 (295)
T PF06325_consen 282 REEG 285 (295)
T ss_dssp EEET
T ss_pred EEEC
Confidence 6543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=121.53 Aligned_cols=116 Identities=20% Similarity=0.150 Sum_probs=92.5
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. ..++.+|||+|||+|..+..+++..+. ..+|+++|+++.+++.|+++++..++ ++++++.+
T Consensus 61 ~~p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~---~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~ 135 (215)
T TIGR00080 61 SAPHMVAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGR---DGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVG 135 (215)
T ss_pred chHHHHHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEEC
Confidence 45556677777664 567889999999999999988887542 24799999999999999999999887 56999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|..+......+||+|+++.+...++ +.+.+.|+|||++++.
T Consensus 136 d~~~~~~~~~~fD~Ii~~~~~~~~~------------------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 136 DGTQGWEPLAPYDRIYVTAAGPKIP------------------EALIDQLKEGGILVMP 176 (215)
T ss_pred CcccCCcccCCCCEEEEcCCccccc------------------HHHHHhcCcCcEEEEE
Confidence 9977543346899999986654433 3467889999998874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=126.46 Aligned_cols=124 Identities=20% Similarity=0.303 Sum_probs=95.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++. + ..+++++|+|+.+++.+++|+..+++..++.+...+... ...++||+|+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g----~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G----AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIV 230 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEE
Confidence 35689999999999999877653 2 358999999999999999999999887677777776433 2356899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEEee
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~~~ 260 (293)
+|.... ....+++++.++|||||.+++++.. +.+++.+.+++. |..+++.+
T Consensus 231 an~~~~---------------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 231 ANILAE---------------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred EecCHH---------------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeEec
Confidence 986533 3457889999999999999997654 344566777665 87666543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=137.18 Aligned_cols=120 Identities=22% Similarity=0.302 Sum_probs=93.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCccc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFD 190 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD 190 (293)
..++.+|||+|||+|..+..+++..+ +.+++|+|+|+.|++.|+++....+ .++.++++|..+++ +++++||
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P----~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETE----DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEE
Confidence 34578999999999999988887765 5799999999999999998876554 34788999998876 6678999
Q ss_pred EEEecchhhhhcc-ccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 191 VVVSAAFFHTVGK-EYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 191 ~Iv~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+|++++++|++.. .+.....-...+...+++++.++|||||.+++.+.
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999999986521 00000000123778999999999999999999764
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=116.17 Aligned_cols=107 Identities=23% Similarity=0.373 Sum_probs=90.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceE-EEEcCCCCCC-CCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVT-AREGDVRSLP-FGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~fD~I 192 (293)
....|||+|||+|..- +.++- .+..+|+++|.++.|-+.+.+.++.+.. .++. |+.++.++++ ++++++|+|
T Consensus 76 ~K~~vLEvgcGtG~Nf----kfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANF----KFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred CccceEEecccCCCCc----ccccC-CCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeE
Confidence 3346899999999874 33331 1367999999999999999999988753 4465 9999999988 789999999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
|+..++.... ++.+.++++.++|+|||+++++++.
T Consensus 150 V~TlvLCSve------------~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 150 VCTLVLCSVE------------DPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEEEEEeccC------------CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 9999999888 9999999999999999999997754
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-14 Score=122.63 Aligned_cols=137 Identities=24% Similarity=0.289 Sum_probs=104.6
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+..++.++ .+++|||||||+|..+..++..-+ ..|+|+|.++....+.+...+..+....+.++..-+.++|.
T Consensus 106 rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA-----~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 106 RLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGA-----KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN 179 (315)
T ss_pred HHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCC-----CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc
Confidence 355555443 478999999999999988887633 48999999998776655443444433335555456677765
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE----Ec---------------------CC
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV----WD---------------------LL 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~----~~---------------------~~ 239 (293)
.+.||+|+|..+++|.. +|...+++++..|+|||.|++ ++ ..
T Consensus 180 -~~~FDtVF~MGVLYHrr------------~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiP 246 (315)
T PF08003_consen 180 -LGAFDTVFSMGVLYHRR------------SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIP 246 (315)
T ss_pred -cCCcCEEEEeeehhccC------------CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeC
Confidence 67899999999999998 999999999999999999996 11 12
Q ss_pred CchHHHHHHHHcCCcceEEee
Q 022698 240 HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 ~~~~~~~~l~~~gf~~~~~~~ 260 (293)
+.......+++.||+.+++..
T Consensus 247 s~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 247 SVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred CHHHHHHHHHHcCCceEEEec
Confidence 345788899999999999864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=119.86 Aligned_cols=144 Identities=26% Similarity=0.275 Sum_probs=119.7
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
.+.....++..+ .+.++.+|+|.|+|||.++..|+..... ..+|+.+|+.++.++.|++|++..++.+++.+...|
T Consensus 79 yPKD~~~I~~~~-gi~pg~rVlEAGtGSG~lt~~La~~vg~---~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D 154 (256)
T COG2519 79 YPKDAGYIVARL-GISPGSRVLEAGTGSGALTAYLARAVGP---EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD 154 (256)
T ss_pred cCCCHHHHHHHc-CCCCCCEEEEcccCchHHHHHHHHhhCC---CceEEEEEecHHHHHHHHHHHHHhccccceEEEecc
Confidence 344445555555 3789999999999999999999987654 369999999999999999999999998889999999
Q ss_pred CCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcce
Q 022698 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDI 256 (293)
Q Consensus 179 ~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~ 256 (293)
+.+...++ .||.|+..- + +|-++++.+...|+|||.++++... +.....+.|++.||..+
T Consensus 155 v~~~~~~~-~vDav~LDm-----p------------~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 155 VREGIDEE-DVDAVFLDL-----P------------DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDI 216 (256)
T ss_pred cccccccc-ccCEEEEcC-----C------------ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccch
Confidence 99865444 899999863 3 8889999999999999999886554 55678899999999999
Q ss_pred EEeeeecc
Q 022698 257 RVSERVTA 264 (293)
Q Consensus 257 ~~~~~~~~ 264 (293)
+..+-+..
T Consensus 217 e~~E~l~R 224 (256)
T COG2519 217 EAVETLVR 224 (256)
T ss_pred hhheeeeh
Confidence 88765544
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.4e-14 Score=118.50 Aligned_cols=130 Identities=21% Similarity=0.195 Sum_probs=98.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....+..+++.+..+|+.. .+++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR------GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEE
Confidence 45679999999999999888765 347999999999999999998877765678999998432 357899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------CCchHHHHHH
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-------------------------LHVPEYVRRL 248 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------------~~~~~~~~~l 248 (293)
++.++++.+ .++....++.+.+.+++++.+.+... ....++...+
T Consensus 133 ~~~~l~~~~----------~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 202 (230)
T PRK07580 133 CLDVLIHYP----------QEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRAL 202 (230)
T ss_pred EcchhhcCC----------HHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHH
Confidence 999987766 23667788888887765555443211 1124577788
Q ss_pred HHcCCcceEEeeee
Q 022698 249 QELKMEDIRVSERV 262 (293)
Q Consensus 249 ~~~gf~~~~~~~~~ 262 (293)
.++||+.++.....
T Consensus 203 ~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 203 AAAGFKVVRTERIS 216 (230)
T ss_pred HHCCCceEeeeecc
Confidence 89999877765433
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-14 Score=119.87 Aligned_cols=136 Identities=22% Similarity=0.296 Sum_probs=106.8
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
.+.+...+. ..++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+. .+.+...|+.+.
T Consensus 37 ~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 107 (233)
T PRK05134 37 LNYIREHAG-GLFGKRVLDVGCGGGILSESMARL------GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEEL 107 (233)
T ss_pred HHHHHHhcc-CCCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHh
Confidence 344444432 346789999999999999877764 35899999999999999998877664 377888888765
Q ss_pred C-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------------
Q 022698 183 P-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------------- 239 (293)
Q Consensus 183 ~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 239 (293)
+ ...++||+|+++.++++.+ ++..+++.+.+.|+|||.+++....
T Consensus 108 ~~~~~~~fD~Ii~~~~l~~~~------------~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (233)
T PRK05134 108 AAEHPGQFDVVTCMEMLEHVP------------DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPK 175 (233)
T ss_pred hhhcCCCccEEEEhhHhhccC------------CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCc
Confidence 4 2357899999999999887 7888999999999999999875321
Q ss_pred ---------CchHHHHHHHHcCCcceEEe
Q 022698 240 ---------HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 240 ---------~~~~~~~~l~~~gf~~~~~~ 259 (293)
..+++.++++++||+.++..
T Consensus 176 ~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 176 GTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred ccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 22458888999999988764
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-14 Score=119.07 Aligned_cols=116 Identities=22% Similarity=0.202 Sum_probs=92.5
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. ..++.+|||||||+|..+..+++..+. +.+|+++|+++.+++.++++++..+. .++.++.+
T Consensus 60 ~~p~~~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~---~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~g 134 (212)
T PRK13942 60 SAIHMVAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGK---SGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVG 134 (212)
T ss_pred CcHHHHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEEC
Confidence 45667777777764 567889999999999999888877542 35999999999999999999998876 46999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|........++||+|++......++ +.+.+.|||||++++.
T Consensus 135 d~~~~~~~~~~fD~I~~~~~~~~~~------------------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 135 DGTLGYEENAPYDRIYVTAAGPDIP------------------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcccCCCcCCCcCEEEECCCcccch------------------HHHHHhhCCCcEEEEE
Confidence 9877544567899999876544332 3466789999998884
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=117.20 Aligned_cols=104 Identities=27% Similarity=0.390 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.++||+|||.|..+..|+++ +..|+++|+|+.+++.+++.++..++. ++....|+.+..++ ++||+|+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~------G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ------GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT------T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEEE
Confidence 35679999999999999999987 679999999999999999998888875 99999999887664 6899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+.-++++++ .+....+++.+...++|||.+++.
T Consensus 100 st~v~~fL~----------~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 100 STVVFMFLQ----------RELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EESSGGGS-----------GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEeccCC----------HHHHHHHHHHHHhhcCCcEEEEEE
Confidence 988888877 236678999999999999998773
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=119.16 Aligned_cols=103 Identities=16% Similarity=0.309 Sum_probs=84.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.+|||+|||+|..+..+++.++ +.+++|+|+|+.|++.|+++.. ++.+.++|+.+ ++++++||+|
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~----~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~~sfD~V 109 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLP----FKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKDNFFDLV 109 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCC----CCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCCCCEEEE
Confidence 34567899999999999999887654 4699999999999999987642 26788899887 7778899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+++.+++|++ .++...+++++.+++ ++.+++.+.
T Consensus 110 ~~~~vL~hl~----------p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 110 LTKGVLIHIN----------PDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred EECChhhhCC----------HHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 9999999886 337788999999987 466766543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-13 Score=115.26 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
.+....++..+ ...++.+|||+|||+|.++..+++..+ +.+++++|+|+.+++.+++|++..+. ++++++.+|+
T Consensus 26 ~~v~~~l~~~l-~~~~~~~VLDiG~G~G~~~~~la~~~~----~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~ 99 (196)
T PRK07402 26 REVRLLLISQL-RLEPDSVLWDIGAGTGTIPVEAGLLCP----KGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSA 99 (196)
T ss_pred HHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECch
Confidence 33333455555 456778999999999999998876544 46999999999999999999988876 4589999998
Q ss_pred CC-CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHc---CC
Q 022698 180 RS-LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQEL---KM 253 (293)
Q Consensus 180 ~~-~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~---gf 253 (293)
.+ ++.....+|.++.... . +...+++++.+.|+|||.+++..... ..+..+.+++. ++
T Consensus 100 ~~~~~~~~~~~d~v~~~~~----~------------~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~ 163 (196)
T PRK07402 100 PECLAQLAPAPDRVCIEGG----R------------PIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNI 163 (196)
T ss_pred HHHHhhCCCCCCEEEEECC----c------------CHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCc
Confidence 64 2211234677655321 1 34678999999999999998865432 22344555554 44
Q ss_pred cceEE
Q 022698 254 EDIRV 258 (293)
Q Consensus 254 ~~~~~ 258 (293)
+.+++
T Consensus 164 ~~~~~ 168 (196)
T PRK07402 164 EVVQA 168 (196)
T ss_pred eEEEE
Confidence 44444
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-14 Score=121.50 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=96.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
...+|||+|||+|.++..++...+ ..+++++|+|+.|++.++++. +++.++++|+.+.. ...+||+|++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~----~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~-~~~kFDlIIs 132 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK----PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFE-SNEKFDVVIS 132 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhc-ccCCCcEEEE
Confidence 356899999999999988877643 359999999999999998863 24789999998864 3468999999
Q ss_pred cchhhhhccccCcchhhh------HHH--HHHHHHHHHHcccCCcEEEEE--------cCCCchHHHHHHHHcCCc
Q 022698 195 AAFFHTVGKEYGHRTVEA------AAE--RMRVLGEMVRVLKPGGVGVVW--------DLLHVPEYVRRLQELKME 254 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~------~~~--~~~~l~~~~~~LkpgG~l~~~--------~~~~~~~~~~~l~~~gf~ 254 (293)
|||+++.+.+........ .+. ...+++....+|+|+|.++++ ......++..+++++||.
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 999998653322111110 011 357788888999999987662 123456899999999986
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=116.52 Aligned_cols=127 Identities=23% Similarity=0.299 Sum_probs=103.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC-CCcccEEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG-DNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Iv 193 (293)
.+.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+.. ++.+...|+.+.+.. .++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL------GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEE
Confidence 4679999999999998877764 247999999999999999988876642 488888888776533 37899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------------------------Cch
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-------------------------------HVP 242 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------------------~~~ 242 (293)
++..+++.. ++..+++++.+.|+|||.+++.... ...
T Consensus 118 ~~~~l~~~~------------~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (224)
T TIGR01983 118 CMEVLEHVP------------DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPS 185 (224)
T ss_pred ehhHHHhCC------------CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHH
Confidence 999999887 8889999999999999998874321 123
Q ss_pred HHHHHHHHcCCcceEEee
Q 022698 243 EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 243 ~~~~~l~~~gf~~~~~~~ 260 (293)
++.+.++++||+.+++..
T Consensus 186 ~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 186 ELTSWLESAGLRVKDVKG 203 (224)
T ss_pred HHHHHHHHcCCeeeeeee
Confidence 577889999999887654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-14 Score=130.51 Aligned_cols=147 Identities=19% Similarity=0.200 Sum_probs=107.3
Q ss_pred ccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 022698 89 GNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV 168 (293)
Q Consensus 89 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~ 168 (293)
..|+..+....+.+.+.+++.+. ..++.+|||+|||+|.+++.+++.. .+|+|+|+|+.|++.|++|++.+++
T Consensus 272 ~~F~q~n~~~~e~l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~------~~V~gvD~s~~al~~A~~n~~~~~~ 344 (443)
T PRK13168 272 RDFIQVNAQVNQKMVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA------AEVVGVEGVEAMVERARENARRNGL 344 (443)
T ss_pred CCeEEcCHHHHHHHHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC------CEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 34554444455667777776664 3566799999999999999988763 4899999999999999999998887
Q ss_pred CCceEEEEcCCCCC----CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc-CCCchH
Q 022698 169 QEYVTAREGDVRSL----PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD-LLHVPE 243 (293)
Q Consensus 169 ~~~v~~~~~d~~~~----~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~ 243 (293)
++++++++|+.+. ++.+++||+|+++||+.... ..++.+.+ ++|++++++++ ..+...
T Consensus 345 -~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~---------------~~~~~l~~-~~~~~ivyvSCnp~tlaR 407 (443)
T PRK13168 345 -DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAA---------------EVMQALAK-LGPKRIVYVSCNPATLAR 407 (443)
T ss_pred -CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChH---------------HHHHHHHh-cCCCeEEEEEeChHHhhc
Confidence 4599999998652 23346799999999986543 34454544 68999888854 333333
Q ss_pred HHHHHHHcCCcceEEe
Q 022698 244 YVRRLQELKMEDIRVS 259 (293)
Q Consensus 244 ~~~~l~~~gf~~~~~~ 259 (293)
-...|.+.||+..++.
T Consensus 408 Dl~~L~~~gY~l~~i~ 423 (443)
T PRK13168 408 DAGVLVEAGYRLKRAG 423 (443)
T ss_pred cHHHHhhCCcEEEEEE
Confidence 4456668899866554
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=120.15 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=112.7
Q ss_pred cchHHHHHHHHHhcCC-----C--CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-CC
Q 022698 97 PLHYDMAQRMVGSVND-----W--STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-GV 168 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~-----~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-~~ 168 (293)
+..-..+.++.+.+.. . ....++||||||+|++...++...+ +++++|+|+++.+++.|++|++.+ ++
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~----~~~~~atDId~~Al~~A~~Nv~~Np~l 164 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY----GWRFVGSDIDPQALASAQAIISANPGL 164 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC----CCEEEEEeCCHHHHHHHHHHHHhccCC
Confidence 4445555555555432 1 1356899999999999988877654 579999999999999999999999 78
Q ss_pred CCceEEEE-cCCCCCC----CCCCcccEEEecchhhhhccccCcchhhhHHHHH---------HHHHHHHHcccCCcEEE
Q 022698 169 QEYVTARE-GDVRSLP----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERM---------RVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 169 ~~~v~~~~-~d~~~~~----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~~LkpgG~l~ 234 (293)
.+++.++. .|..... .+.++||+|+|||||+.-..+..........+.. .+=....+++.+||.+-
T Consensus 165 ~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~ 244 (321)
T PRK11727 165 NGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVA 244 (321)
T ss_pred cCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEee
Confidence 88888864 3332221 1356899999999998655321100000000000 00011234455677665
Q ss_pred EEc----------------------CCCchHHHHHHHHcCCcceEEeeeeccceecceeeeee
Q 022698 235 VWD----------------------LLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFR 275 (293)
Q Consensus 235 ~~~----------------------~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~ 275 (293)
++. ....+.+.+.|++.|...+.+.+...|.. .++++.+.
T Consensus 245 fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~~-~~~~vaWs 306 (321)
T PRK11727 245 FIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQGQK-QSRFIAWT 306 (321)
T ss_pred eehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeCCCe-eeEEEEee
Confidence 532 23457899999999999999999888865 23444433
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=126.22 Aligned_cols=111 Identities=27% Similarity=0.383 Sum_probs=89.8
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+. ..++.+|||||||+|..+..+++.. +++|+|+|+|+.+++.++++.+ +. .+++...|..++
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-----g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l- 225 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-----GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL- 225 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc-
Confidence 34444443 5677899999999999998888754 3699999999999999998874 32 278888888764
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+++||.|+++..+++++ ..++..+++++.++|||||.+++..
T Consensus 226 --~~~fD~Ivs~~~~ehvg----------~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 226 --NGQFDRIVSVGMFEHVG----------PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred --CCCCCEEEEeCchhhCC----------hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 46899999999998886 2367789999999999999998843
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-13 Score=118.08 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCC--CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC----CCceE
Q 022698 100 YDMAQRMVGSVNDW--STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV----QEYVT 173 (293)
Q Consensus 100 ~~~~~~l~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~----~~~v~ 173 (293)
....+.+++.+... .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++++..+. ..++.
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~ 200 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPK 200 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcccccccccceE
Confidence 34455555554321 24679999999999999988865 45999999999999999999876421 13478
Q ss_pred EEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC---------------
Q 022698 174 AREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL--------------- 238 (293)
Q Consensus 174 ~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--------------- 238 (293)
|...|+.++ +++||+|+|..+++|.+ .+....+++.+.+ +.+||.++....
T Consensus 201 f~~~Dl~~l---~~~fD~Vv~~~vL~H~p----------~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~ 266 (315)
T PLN02585 201 FEANDLESL---SGKYDTVTCLDVLIHYP----------QDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELF 266 (315)
T ss_pred EEEcchhhc---CCCcCEEEEcCEEEecC----------HHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhc
Confidence 888887653 47899999999988876 2234456666664 456665543211
Q ss_pred -----------CCchHHHHHHHHcCCcceEEe
Q 022698 239 -----------LHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 239 -----------~~~~~~~~~l~~~gf~~~~~~ 259 (293)
...+++.++++++||+..+..
T Consensus 267 ~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 267 PGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred CCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 024578888899999866543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=115.66 Aligned_cols=107 Identities=18% Similarity=0.174 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-----------CCCCceEEEEcCCCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-----------GVQEYVTAREGDVRSL 182 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-----------~~~~~v~~~~~d~~~~ 182 (293)
.++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+.+..... .-..++++.++|+.++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 35679999999999999999875 679999999999999764322110 0023589999999887
Q ss_pred CCC-CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 183 PFG-DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 183 ~~~-~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+.. .++||.|+....+++++ .+....+++.+.++|||||.++++
T Consensus 107 ~~~~~~~fD~i~D~~~~~~l~----------~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 107 TAADLGPVDAVYDRAALIALP----------EEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CcccCCCcCEEEechhhccCC----------HHHHHHHHHHHHHHcCCCCeEEEE
Confidence 532 46799999998888887 346778999999999999986653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-13 Score=128.14 Aligned_cols=134 Identities=22% Similarity=0.251 Sum_probs=102.5
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC--
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-- 181 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-- 181 (293)
..+++.+. ..++.+|||+|||+|..+..+++.. .+++|+|+|+.+++.+++.. +..+++.+++.|+..
T Consensus 27 ~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~------~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~ 96 (475)
T PLN02336 27 PEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA------GQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPD 96 (475)
T ss_pred hHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC------CEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccc
Confidence 44555553 2356699999999999999988762 48999999999998765432 223568999999863
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-----------------CchHH
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-----------------HVPEY 244 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----------------~~~~~ 244 (293)
+++++++||+|+++.++++++ .++...+++++.++|||||++++.+.. ....+
T Consensus 97 ~~~~~~~fD~I~~~~~l~~l~----------~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 166 (475)
T PLN02336 97 LNISDGSVDLIFSNWLLMYLS----------DKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFY 166 (475)
T ss_pred cCCCCCCEEEEehhhhHHhCC----------HHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHH
Confidence 456678999999999999987 234678999999999999999885311 13467
Q ss_pred HHHHHHcCCcceE
Q 022698 245 VRRLQELKMEDIR 257 (293)
Q Consensus 245 ~~~l~~~gf~~~~ 257 (293)
.+++.++||....
T Consensus 167 ~~~f~~~~~~~~~ 179 (475)
T PLN02336 167 TKVFKECHTRDED 179 (475)
T ss_pred HHHHHHheeccCC
Confidence 7888888887653
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=115.72 Aligned_cols=144 Identities=22% Similarity=0.280 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+.....++..+ .+.|+.+|||.|+|+|.++.++++.+.. ..+|+..|+.++..+.|++|++..++.+++.+...|+
T Consensus 26 pkD~~~I~~~l-~i~pG~~VlEaGtGSG~lt~~l~r~v~p---~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 26 PKDISYILMRL-DIRPGSRVLEAGTGSGSLTHALARAVGP---TGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp HHHHHHHHHHT-T--TT-EEEEE--TTSHHHHHHHHHHTT---TSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred CchHHHHHHHc-CCCCCCEEEEecCCcHHHHHHHHHHhCC---CeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 34445555555 4789999999999999999999988754 4599999999999999999999999988999999999
Q ss_pred CCCCCC---CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcc-cCCcEEEEEcCC--CchHHHHHHHHcCC
Q 022698 180 RSLPFG---DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVL-KPGGVGVVWDLL--HVPEYVRRLQELKM 253 (293)
Q Consensus 180 ~~~~~~---~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~--~~~~~~~~l~~~gf 253 (293)
.+..+. +..+|.|+...| +|-..+..+.+.| +|||++++.... +.....+.|++.||
T Consensus 102 ~~~g~~~~~~~~~DavfLDlp-----------------~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFLDLP-----------------DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp GCG--STT-TTSEEEEEEESS-----------------SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred ecccccccccCcccEEEEeCC-----------------CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 653332 367999998643 5667788899999 899999886543 45678889999999
Q ss_pred cceEEeeeecc
Q 022698 254 EDIRVSERVTA 264 (293)
Q Consensus 254 ~~~~~~~~~~~ 264 (293)
..+++.+-+..
T Consensus 165 ~~i~~~Evl~R 175 (247)
T PF08704_consen 165 TDIETVEVLLR 175 (247)
T ss_dssp EEEEEEEEEEE
T ss_pred eeeEEEEEEee
Confidence 99988764443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6e-13 Score=116.60 Aligned_cols=171 Identities=22% Similarity=0.242 Sum_probs=126.5
Q ss_pred cccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc
Q 022698 92 FYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY 171 (293)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~ 171 (293)
|..+....+.+++.++... +..++..|||--||||.+++.+... +++++|+|++..|++-++.|++..++.+.
T Consensus 175 f~~p~s~~P~lAR~mVNLa-~v~~G~~vlDPFcGTGgiLiEagl~------G~~viG~Did~~mv~gak~Nl~~y~i~~~ 247 (347)
T COG1041 175 FFRPGSMDPRLARAMVNLA-RVKRGELVLDPFCGTGGILIEAGLM------GARVIGSDIDERMVRGAKINLEYYGIEDY 247 (347)
T ss_pred ccCcCCcCHHHHHHHHHHh-ccccCCEeecCcCCccHHHHhhhhc------CceEeecchHHHHHhhhhhhhhhhCcCce
Confidence 3344556677888777654 4678889999999999999887655 67999999999999999999999887553
Q ss_pred eEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHc
Q 022698 172 VTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQEL 251 (293)
Q Consensus 172 v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~ 251 (293)
.....+|+..+|+++.++|.|++.|||.-...-.+.. -.+=..++++.++++|++||++++... ......+.+.
T Consensus 248 ~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~---l~~Ly~~~le~~~evLk~gG~~vf~~p---~~~~~~~~~~ 321 (347)
T COG1041 248 PVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEG---LDELYEEALESASEVLKPGGRIVFAAP---RDPRHELEEL 321 (347)
T ss_pred eEEEecccccCCCCCCccceEEecCCCCccccccccc---HHHHHHHHHHHHHHHhhcCcEEEEecC---CcchhhHhhc
Confidence 3344449999998887899999999986544211111 112356789999999999999999765 3445566789
Q ss_pred CCcceEEeeeeccceecceeeeee
Q 022698 252 KMEDIRVSERVTAFMVSSHIVSFR 275 (293)
Q Consensus 252 gf~~~~~~~~~~~~~~~~~~~~~~ 275 (293)
||..+.......+......+..++
T Consensus 322 ~f~v~~~~~~~~H~sLtR~i~v~~ 345 (347)
T COG1041 322 GFKVLGRFTMRVHGSLTRVIYVVR 345 (347)
T ss_pred CceEEEEEEEeecCceEEEEEEEe
Confidence 999888776665544333444433
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=113.37 Aligned_cols=137 Identities=23% Similarity=0.202 Sum_probs=94.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--------C
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--------F 184 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~ 184 (293)
..++.+|||+|||+|.++..+++..+. ..+|+|+|+++. ... .++.++++|+.+.+ +
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~---~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~~ 113 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGD---KGRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLERV 113 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCC---CceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHHh
Confidence 356779999999999999999887642 359999999881 111 34889999998843 4
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHH--cCCcceEEeeee
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQE--LKMEDIRVSERV 262 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~--~gf~~~~~~~~~ 262 (293)
.+++||+|+|+...++.... ..+..........+++++.++|+|||.+++..+. .+++.+.+.+ ..|..+++.++.
T Consensus 114 ~~~~~D~V~S~~~~~~~g~~-~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~-~~~~~~~l~~l~~~f~~v~~~Kp~ 191 (209)
T PRK11188 114 GDSKVQVVMSDMAPNMSGTP-AVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ-GEGFDEYLREIRSLFTKVKVRKPD 191 (209)
T ss_pred CCCCCCEEecCCCCccCCCh-HHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec-CcCHHHHHHHHHhCceEEEEECCc
Confidence 56789999998755443210 0000000001246899999999999999985433 3444444544 479999998888
Q ss_pred ccce
Q 022698 263 TAFM 266 (293)
Q Consensus 263 ~~~~ 266 (293)
....
T Consensus 192 ssr~ 195 (209)
T PRK11188 192 SSRA 195 (209)
T ss_pred cccc
Confidence 7755
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=132.31 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=107.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCCC-CCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSLP-FGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~-~~~~~fD~I 192 (293)
++.+|||+|||+|.+++.+++.- ..+|+++|+|+.+++.+++|++.+++. .+++++++|+.+.. ...++||+|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-----a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlI 612 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-----AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLI 612 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-----CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEE
Confidence 46799999999999999988641 247999999999999999999999886 57999999987631 114689999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-CchHHHHHHHHcCCcceEEeeeecc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-HVPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
+++||+..... .....+....+...++..+.++|+|||.+++.... +.....+.+.+.|+....+.....+
T Consensus 613 ilDPP~f~~~~-~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 684 (702)
T PRK11783 613 FIDPPTFSNSK-RMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITAKTLP 684 (702)
T ss_pred EECCCCCCCCC-ccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEecCCCC
Confidence 99999754321 11122333456778889999999999999885443 3444577888889886655543333
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=119.39 Aligned_cols=98 Identities=28% Similarity=0.406 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
+..+|||+|||+|..+..+++.++..+ ...++|+|+|+.|++.|+++. +++.+.++|+.++|+++++||+|++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~-~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEIT-TMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhccccc-CCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 456899999999999999988765322 247999999999999987652 3478999999998888889999998
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+.. + ..++++.|+|||||.++++..
T Consensus 158 ~~~----~---------------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 158 IYA----P---------------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ecC----C---------------CCHHHHHhhccCCCEEEEEeC
Confidence 632 1 234678999999999998754
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.5e-13 Score=104.35 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=111.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
..-++|||||||..+.+|++.+. +++.+.++|+||.|++...+.++.|+.. +..++.|+... +..++.|+++.|
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~---~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~-l~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG---PQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSG-LRNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC---CCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhh-hccCCccEEEEC
Confidence 56799999999999999998765 3678999999999999999999988754 78899998773 445899999999
Q ss_pred chhhhhccccC--------cch-hhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCchHHHHHHHHcCCcceEEeeeecc
Q 022698 196 AFFHTVGKEYG--------HRT-VEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 196 ~~~~~~~~~~~--------~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
|||-..++++- +.+ ....+-...++.++-..|.|.|+++++. ....+++...+++.||......++-.+
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~Rk~~ 197 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQRKAG 197 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEEEecC
Confidence 99977665432 111 1112234568888889999999998854 445678999999999987666554444
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-13 Score=115.46 Aligned_cols=125 Identities=21% Similarity=0.197 Sum_probs=94.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
...++.+|||+|||+|..+..+++.+... ..|+++|+++.+++.+++|++.+++. ++.+...|...++...++||.
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~---g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNE---GAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCC---CEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCE
Confidence 45677899999999999999998876532 48999999999999999999999874 589999998776544567999
Q ss_pred EEecchhhhhcc---ccCc-------chhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 192 VVSAAFFHTVGK---EYGH-------RTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 192 Iv~~~~~~~~~~---~~~~-------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
|++++|...... ++.. ....-.....++++.+.++|||||+++++.+..
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999988653321 1110 000011133568999999999999999876654
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=112.36 Aligned_cols=144 Identities=18% Similarity=0.178 Sum_probs=101.2
Q ss_pred cchHHHHHHHHHhcC--CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 97 PLHYDMAQRMVGSVN--DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
+....++..++.-+. .+.++.+|||+|||+|.++.+++..... ..+|+++|+|+.+++.+.+.+... .++.+
T Consensus 112 p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~---~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~ 185 (293)
T PTZ00146 112 PFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGP---EGVVYAVEFSHRSGRDLTNMAKKR---PNIVP 185 (293)
T ss_pred CcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECcHHHHHHHHHHhhhc---CCCEE
Confidence 455667766654443 2467889999999999999999988743 248999999998776555554432 34788
Q ss_pred EEcCCCCC---CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE-E-----cCCCch-HH
Q 022698 175 REGDVRSL---PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV-W-----DLLHVP-EY 244 (293)
Q Consensus 175 ~~~d~~~~---~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~-~-----~~~~~~-~~ 244 (293)
+..|+... .....+||+|+++... + ++...++.++.+.|||||.+++ + +....+ +.
T Consensus 186 I~~Da~~p~~y~~~~~~vDvV~~Dva~---p-----------dq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~ 251 (293)
T PTZ00146 186 IIEDARYPQKYRMLVPMVDVIFADVAQ---P-----------DQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVV 251 (293)
T ss_pred EECCccChhhhhcccCCCCEEEEeCCC---c-----------chHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHH
Confidence 89998642 1123579999997631 2 1445667789999999999988 2 222222 22
Q ss_pred ----HHHHHHcCCcceEEee
Q 022698 245 ----VRRLQELKMEDIRVSE 260 (293)
Q Consensus 245 ----~~~l~~~gf~~~~~~~ 260 (293)
.+.|+++||+.++...
T Consensus 252 f~~ev~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 252 FASEVQKLKKEGLKPKEQLT 271 (293)
T ss_pred HHHHHHHHHHcCCceEEEEe
Confidence 4778999999887764
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-13 Score=108.54 Aligned_cols=113 Identities=26% Similarity=0.302 Sum_probs=94.4
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. ..++.+|||||||+|..+..+++.. .+|+.+|+.+...+.|++|++..|..+ |.+.++
T Consensus 56 s~P~~vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~------~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~g 127 (209)
T COG2518 56 SAPHMVARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLV------GRVVSIERIEELAEQARRNLETLGYEN-VTVRHG 127 (209)
T ss_pred cCcHHHHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHh------CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEEC
Confidence 44557777777775 6788999999999999999888764 399999999999999999999999854 999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|....-.+..+||.|++......+| +.+.+.|++||++++.
T Consensus 128 DG~~G~~~~aPyD~I~Vtaaa~~vP------------------~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 128 DGSKGWPEEAPYDRIIVTAAAPEVP------------------EALLDQLKPGGRLVIP 168 (209)
T ss_pred CcccCCCCCCCcCEEEEeeccCCCC------------------HHHHHhcccCCEEEEE
Confidence 9987433457899999998877776 3467789999999883
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.9e-13 Score=110.90 Aligned_cols=113 Identities=24% Similarity=0.236 Sum_probs=88.3
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. ..++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++++..++. ++.+..+
T Consensus 62 ~~p~~~~~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~------~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~ 133 (212)
T PRK00312 62 SQPYMVARMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLV------RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHG 133 (212)
T ss_pred CcHHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHHh------CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEEC
Confidence 45666677776654 4677899999999999998776653 38999999999999999999988764 4899999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|..+.....++||+|+++.+...++ +.+.+.|+|||.+++.
T Consensus 134 d~~~~~~~~~~fD~I~~~~~~~~~~------------------~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 134 DGWKGWPAYAPFDRILVTAAAPEIP------------------RALLEQLKEGGILVAP 174 (212)
T ss_pred CcccCCCcCCCcCEEEEccCchhhh------------------HHHHHhcCCCcEEEEE
Confidence 9866322347899999987654433 3467899999999884
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.6e-13 Score=122.02 Aligned_cols=125 Identities=16% Similarity=0.213 Sum_probs=95.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CCCCccc
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FGDNYFD 190 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 190 (293)
...++.+|||+|||+|..+.+++..... +.+|+++|+|+.+++.+++|+++.|+. ++.+.+.|+..++ ...++||
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~---~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKD---QGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCC
Confidence 4567789999999999999999987643 359999999999999999999999874 5899999998765 3356899
Q ss_pred EEEecchhhhhccc---cCcc-------hhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 191 VVVSAAFFHTVGKE---YGHR-------TVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~---~~~~-------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
.|++++|+...... +... ...-.....+++.++.+.|||||.++++.+..
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99999887544321 1100 00011234568999999999999999876654
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=106.22 Aligned_cols=156 Identities=22% Similarity=0.288 Sum_probs=103.4
Q ss_pred ccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCC-----CcEEEEEeCCHHHHHHHHHHHHhcC
Q 022698 93 YSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGS-----LGRVVGLDCKKRTTLSTLRTAKMEG 167 (293)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~-----~~~v~~vDis~~~l~~a~~~~~~~~ 167 (293)
..+.++.+.++..++.... +.++..|||..||+|++.+..+.......+ ..+++|+|+++.+++.+++|++..+
T Consensus 7 ~~~a~L~~~lA~~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag 85 (179)
T PF01170_consen 7 FGPAPLRPTLAAALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG 85 (179)
T ss_dssp SSSTSS-HHHHHHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc
Confidence 3445678888888887664 577889999999999999988776553210 1248999999999999999999999
Q ss_pred CCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHH
Q 022698 168 VQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRR 247 (293)
Q Consensus 168 ~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 247 (293)
+...+.+.+.|+.++++.++++|.||+||||...-.. ......-...+++++.++|++...+++.. ...+...
T Consensus 86 ~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~----~~~~~~ly~~~~~~~~~~l~~~~v~l~~~---~~~~~~~ 158 (179)
T PF01170_consen 86 VEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGS----KKDLEKLYRQFLRELKRVLKPRAVFLTTS---NRELEKA 158 (179)
T ss_dssp -CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCH----HHHHHHHHHHHHHHHHCHSTTCEEEEEES---CCCHHHH
T ss_pred cCCceEEEecchhhcccccCCCCEEEECcchhhhccC----HHHHHHHHHHHHHHHHHHCCCCEEEEEEC---CHHHHHH
Confidence 8888999999999988667899999999999653210 00011123467788889999944444443 3345566
Q ss_pred HHHcCCcce
Q 022698 248 LQELKMEDI 256 (293)
Q Consensus 248 l~~~gf~~~ 256 (293)
+...++...
T Consensus 159 ~~~~~~~~~ 167 (179)
T PF01170_consen 159 LGLKGWRKR 167 (179)
T ss_dssp HTSTTSEEE
T ss_pred hcchhhceE
Confidence 666655443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-13 Score=112.04 Aligned_cols=116 Identities=23% Similarity=0.275 Sum_probs=89.4
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. +.++.+|||||||+|..+..++....+ ..+|+++|+.+...+.|+++++..+. .++.++.+
T Consensus 56 s~P~~~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~---~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~g 130 (209)
T PF01135_consen 56 SAPSMVARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGP---VGRVVSVERDPELAERARRNLARLGI-DNVEVVVG 130 (209)
T ss_dssp --HHHHHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHST---TEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES
T ss_pred hHHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCc---cceEEEECccHHHHHHHHHHHHHhcc-CceeEEEc
Confidence 55678888888886 788999999999999999999877653 34899999999999999999999886 46999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|.........+||.|+++......+ ..+.+.|++||+|++.
T Consensus 131 dg~~g~~~~apfD~I~v~~a~~~ip------------------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 131 DGSEGWPEEAPFDRIIVTAAVPEIP------------------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp -GGGTTGGG-SEEEEEESSBBSS--------------------HHHHHTEEEEEEEEEE
T ss_pred chhhccccCCCcCEEEEeeccchHH------------------HHHHHhcCCCcEEEEE
Confidence 9876433457899999987776554 3366789999999883
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-12 Score=107.05 Aligned_cols=160 Identities=21% Similarity=0.281 Sum_probs=104.6
Q ss_pred hhhhHHhhhccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhccccc
Q 022698 13 EWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFF 92 (293)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~ 92 (293)
.-++.|..-+.+.+.++++.+.+.+..+.++.++... .++..... |.++
T Consensus 23 ~ET~~FL~~S~e~S~~~~~ql~~~l~~~~L~~f~S~T--~iNG~LgR--------------G~MF--------------- 71 (265)
T PF05219_consen 23 EETQEFLDRSYEKSDWFFTQLWHSLASSILSWFMSKT--DINGILGR--------------GSMF--------------- 71 (265)
T ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHhHH--hHhhhhcC--------------CcEE---------------
Confidence 3455566666666666777777777655554444432 22222211 2222
Q ss_pred ccCccchHHHHHHHHHhcC-CC---CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 022698 93 YSAVPLHYDMAQRMVGSVN-DW---STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV 168 (293)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~-~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~ 168 (293)
..+.+..+.++..-. .. ....++||||+|.|..+..++..+. +|+++|.|+.|.... +..|.
T Consensus 72 ----vfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~------~v~aTE~S~~Mr~rL----~~kg~ 137 (265)
T PF05219_consen 72 ----VFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK------EVYATEASPPMRWRL----SKKGF 137 (265)
T ss_pred ----EecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc------eEEeecCCHHHHHHH----HhCCC
Confidence 133334444444321 11 1356899999999999999998865 899999999975444 44443
Q ss_pred CCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 169 QEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 169 ~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.++ |..+....+.+||+|.|.+++.... +|..+++.+++.|+|+|++++
T Consensus 138 ----~vl--~~~~w~~~~~~fDvIscLNvLDRc~------------~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 138 ----TVL--DIDDWQQTDFKFDVISCLNVLDRCD------------RPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred ----eEE--ehhhhhccCCceEEEeehhhhhccC------------CHHHHHHHHHHHhCCCCEEEE
Confidence 232 2223332356899999999999887 899999999999999999987
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-13 Score=112.57 Aligned_cols=153 Identities=21% Similarity=0.304 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+.+.+.++..... .+-.++||+|||||-.+..+-... .+++|+|||++|++.|.+. +..+ .+.+.+.
T Consensus 111 P~~l~emI~~~~~-g~F~~~lDLGCGTGL~G~~lR~~a------~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea 177 (287)
T COG4976 111 PELLAEMIGKADL-GPFRRMLDLGCGTGLTGEALRDMA------DRLTGVDISENMLAKAHEK----GLYD--TLYVAEA 177 (287)
T ss_pred HHHHHHHHHhccC-CccceeeecccCcCcccHhHHHHH------hhccCCchhHHHHHHHHhc----cchH--HHHHHHH
Confidence 4455566655542 346799999999999998876653 3899999999999888765 2221 2333443
Q ss_pred CCCC--CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC----------------CCc
Q 022698 180 RSLP--FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL----------------LHV 241 (293)
Q Consensus 180 ~~~~--~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----------------~~~ 241 (293)
..+. ....+||+|++..++.++. +...++.-+...|+|||.+.|+.. .+.
T Consensus 178 ~~Fl~~~~~er~DLi~AaDVl~YlG------------~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~ 245 (287)
T COG4976 178 VLFLEDLTQERFDLIVAADVLPYLG------------ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHS 245 (287)
T ss_pred HHHhhhccCCcccchhhhhHHHhhc------------chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccc
Confidence 3221 3457899999999999988 888999999999999999998421 122
Q ss_pred -hHHHHHHHHcCCcceEEee----eeccceecceeeeeecC
Q 022698 242 -PEYVRRLQELKMEDIRVSE----RVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 242 -~~~~~~l~~~gf~~~~~~~----~~~~~~~~~~~~~~~~~ 277 (293)
+.+...+...||+.+++++ ...+.+.+...+.++|+
T Consensus 246 ~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 246 ESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred hHHHHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecC
Confidence 3467778899999998854 23344444555555554
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.9e-13 Score=122.71 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=105.4
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
++......+...+ ...++.+|||+|||+|..+..+++.... .++|+++|+++.+++.+++|++..|+. ++.+++.
T Consensus 236 ~qd~~s~l~~~~l-~~~~g~~VLDl~ag~G~kt~~la~~~~~---~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~ 310 (434)
T PRK14901 236 VQDRSAQLVAPLL-DPQPGEVILDACAAPGGKTTHIAELMGD---QGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAA 310 (434)
T ss_pred EECHHHHHHHHHh-CCCCcCEEEEeCCCCchhHHHHHHHhCC---CceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence 3343344444444 3466789999999999999999987643 359999999999999999999999875 4999999
Q ss_pred CCCCCC----CCCCcccEEEecchhhhhcc---ccCcch-------hhhHHHHHHHHHHHHHcccCCcEEEEEcCCCch-
Q 022698 178 DVRSLP----FGDNYFDVVVSAAFFHTVGK---EYGHRT-------VEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP- 242 (293)
Q Consensus 178 d~~~~~----~~~~~fD~Iv~~~~~~~~~~---~~~~~~-------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~- 242 (293)
|+.+++ ...++||.|++++|...... .+...- ..-.....+++.++.+.|||||.++++++...+
T Consensus 311 D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~ 390 (434)
T PRK14901 311 DSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA 390 (434)
T ss_pred ChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 998764 33568999999877532211 111000 000112467899999999999999887654422
Q ss_pred ----HHHHHHHHc-CCc
Q 022698 243 ----EYVRRLQEL-KME 254 (293)
Q Consensus 243 ----~~~~~l~~~-gf~ 254 (293)
.+...+++. +|+
T Consensus 391 Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 391 ENEAQIEQFLARHPDWK 407 (434)
T ss_pred hHHHHHHHHHHhCCCcE
Confidence 244455555 454
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=115.50 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=82.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-CCCCC----c
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-PFGDN----Y 188 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~----~ 188 (293)
.++.+|||+|||+|..+..+++.+++ +.+++++|+|++|++.+++++......-++.++++|+.+. +.... .
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~---~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQ---PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhcc---CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCC
Confidence 35578999999999999999988753 2589999999999999998876543223477889998763 33222 2
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
..++++...+++++ .++...+++++++.|+|||.+++
T Consensus 139 ~~~~~~gs~~~~~~----------~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 139 RLGFFPGSTIGNFT----------PEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred eEEEEecccccCCC----------HHHHHHHHHHHHHhcCCCCEEEE
Confidence 33444456666665 34778999999999999999987
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=121.66 Aligned_cols=135 Identities=21% Similarity=0.172 Sum_probs=97.3
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
+++.-...+...+ ...++.+|||+|||+|..+..+++..+ +.+|+++|+|+.+++.+++|++.++.. +.++++
T Consensus 228 iQd~~s~~~~~~l-~~~~g~~VLDlgaG~G~~t~~la~~~~----~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~ 300 (427)
T PRK10901 228 VQDAAAQLAATLL-APQNGERVLDACAAPGGKTAHILELAP----QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVG 300 (427)
T ss_pred EECHHHHHHHHHc-CCCCCCEEEEeCCCCChHHHHHHHHcC----CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEc
Confidence 3343333344444 346778999999999999999988764 359999999999999999999998864 789999
Q ss_pred CCCCCC--CCCCcccEEEecchhhhhcc---ccCc---chhh----hHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 178 DVRSLP--FGDNYFDVVVSAAFFHTVGK---EYGH---RTVE----AAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 178 d~~~~~--~~~~~fD~Iv~~~~~~~~~~---~~~~---~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
|+.+++ +..++||.|++++|+..... .+.. .... -......+++.+.+.|||||.+++..+.
T Consensus 301 D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 301 DARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 998753 23567999999988653211 1110 0000 0123457899999999999999987653
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-13 Score=118.53 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=101.7
Q ss_pred HhhhcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH
Q 022698 84 LFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA 163 (293)
Q Consensus 84 ~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~ 163 (293)
+......||..+....+.+.+.+.+.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++|+
T Consensus 143 ~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~-~~~~~VLDl~cG~G~~sl~la~~------~~~V~gvD~s~~av~~A~~n~ 215 (315)
T PRK03522 143 LFIRPQSFFQTNPAVAAQLYATARDWVRE-LPPRSMWDLFCGVGGFGLHCATP------GMQLTGIEISAEAIACAKQSA 215 (315)
T ss_pred EEECCCeeeecCHHHHHHHHHHHHHHHHh-cCCCEEEEccCCCCHHHHHHHhc------CCEEEEEeCCHHHHHHHHHHH
Confidence 33344455554444445555555555432 24579999999999999999874 359999999999999999999
Q ss_pred HhcCCCCceEEEEcCCCCCCC-CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-CCc
Q 022698 164 KMEGVQEYVTAREGDVRSLPF-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-LHV 241 (293)
Q Consensus 164 ~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~ 241 (293)
+.+++ ++++|+++|+.++.. ..++||+|+++||...+. ..+++. ...++|++++++.+. ...
T Consensus 216 ~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~--------------~~~~~~-l~~~~~~~ivyvsc~p~t~ 279 (315)
T PRK03522 216 AELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPRRGIG--------------KELCDY-LSQMAPRFILYSSCNAQTM 279 (315)
T ss_pred HHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCCCCcc--------------HHHHHH-HHHcCCCeEEEEECCcccc
Confidence 99987 579999999977532 235799999998854332 122222 234678887777443 233
Q ss_pred hHHHHHHHHcCCcceEEe
Q 022698 242 PEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~~~ 259 (293)
..-...+ .||+..++.
T Consensus 280 ~rd~~~l--~~y~~~~~~ 295 (315)
T PRK03522 280 AKDLAHL--PGYRIERVQ 295 (315)
T ss_pred hhHHhhc--cCcEEEEEE
Confidence 3333344 577755543
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=120.96 Aligned_cols=137 Identities=20% Similarity=0.155 Sum_probs=96.6
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
+..-...+...+. ..++.+|||+|||+|..+..+++..+ .++++++|+|+.+++.+++|++..++..++.+..+|
T Consensus 223 Qd~~s~~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~----~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d 297 (426)
T TIGR00563 223 QDASAQWVATWLA-PQNEETILDACAAPGGKTTHILELAP----QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGD 297 (426)
T ss_pred ECHHHHHHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcC----CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 3333344444443 46678999999999999999998765 359999999999999999999998875334446677
Q ss_pred CCCCCC--CCCcccEEEecchhhhhcc---ccCc---c----hhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 179 VRSLPF--GDNYFDVVVSAAFFHTVGK---EYGH---R----TVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 179 ~~~~~~--~~~~fD~Iv~~~~~~~~~~---~~~~---~----~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
....+. ..++||.|++++|...... .+.. . ...-.....+++.++.++|||||.++++++..
T Consensus 298 ~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 655432 4568999999877543321 1110 0 00111234679999999999999999976654
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=113.70 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=98.2
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
...+.++..+....++.+|||||||+|.++..+++..| ..+++++|+++.+++.|++++...+..++++++.+|+.
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p----~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~ 127 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP----DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGA 127 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHH
Confidence 44555544433334567899999999999999988876 56999999999999999999876655567999999986
Q ss_pred CC-CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc---hHHHHHHHHcCCcc
Q 022698 181 SL-PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV---PEYVRRLQELKMED 255 (293)
Q Consensus 181 ~~-~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~l~~~gf~~ 255 (293)
+. ....++||+|+++. ++... . .......++++++.+.|+|||++++.-.... .+..+.+++. |..
T Consensus 128 ~~l~~~~~~yD~I~~D~-~~~~~----~---~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~-F~~ 197 (262)
T PRK04457 128 EYIAVHRHSTDVILVDG-FDGEG----I---IDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESS-FEG 197 (262)
T ss_pred HHHHhCCCCCCEEEEeC-CCCCC----C---ccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHh-cCC
Confidence 53 22235799999873 21110 0 0001236899999999999999988333233 3344555444 653
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.5e-13 Score=118.66 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=89.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC--CCCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL--PFGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~I 192 (293)
.+..+||||||+|.++..+++..| ...++|+|+++.+++.+.+++..+++ +++.++++|+..+ .++++++|.|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P----~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP----NKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC----CCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEE
Confidence 456899999999999999999876 46999999999999999999998887 4599999998653 3567899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+++.|..|.. ..+.+. ....+++++.++|+|||.+.+..
T Consensus 197 ~lnFPdPW~K-krHRRl-----v~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 197 FVHFPVPWDK-KPHRRV-----ISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred EEeCCCCccc-cchhhc-----cHHHHHHHHHHHcCCCcEEEEEE
Confidence 9987654432 111000 12579999999999999998843
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.4e-13 Score=120.72 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=94.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCCC--C--CCCcc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSLP--F--GDNYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~--~~~~f 189 (293)
++.+|||+|||+|.+++.++.. + ..+|+++|+|+.+++.+++|++.+++. ++++++++|+.+.. + ..++|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-g----a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-G----CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-C----CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 4679999999999998765532 1 359999999999999999999999985 47999999997742 1 24589
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---CchHHHHHHHH
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---HVPEYVRRLQE 250 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~l~~ 250 (293)
|+|+++||+..... ........+...+++.+.++|+|||.++.+++. ..+++.+.+.+
T Consensus 295 DlVilDPP~f~~~k---~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 295 DVIVMDPPKFVENK---SQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred CEEEECCCCCCCCh---HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 99999999753321 111222235567777888999999999985543 34455555543
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.8e-13 Score=112.00 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=80.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
+.+|||+|||+|.++..+++..+... ..+|+++|+++.+++.|++|.. ++.++..|+...++ +++||+||+|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~-~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~-~~~FDlIIsN 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAK-PREIVCVELNHTYYKLGKRIVP------EATWINADALTTEF-DTLFDMAISN 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCC-CcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccc-cCCccEEEEC
Confidence 56999999999999999987654211 3599999999999999998753 37889999987554 5689999999
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
|||................-...+++.+.+++++|+. ++
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 9998655221111111112355688888886666665 44
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=108.03 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-----------CCCCceEEEEcCCCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-----------GVQEYVTAREGDVRSL 182 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-----------~~~~~v~~~~~d~~~~ 182 (293)
.++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+.+..... -...++++.++|+.++
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCC
Confidence 45679999999999999999875 679999999999999764321110 0124689999999987
Q ss_pred CCC-CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 183 PFG-DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 183 ~~~-~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+.. .+.||.|+....+++++ .+....+++.+.++|+|||.+++
T Consensus 110 ~~~~~~~fd~v~D~~~~~~l~----------~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 110 TAADLADVDAVYDRAALIALP----------EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CcccCCCeeEEEehHhHhhCC----------HHHHHHHHHHHHHHcCCCCeEEE
Confidence 532 35899999998888887 44778899999999999996544
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=119.56 Aligned_cols=143 Identities=22% Similarity=0.214 Sum_probs=100.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-CCCccc
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-GDNYFD 190 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD 190 (293)
...++.+|||+|||+|..+..+++.... ..+++++|+++.+++.+++|++.+++.+ +.++++|+.++.. -.++||
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~---~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKN---TGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFAEKFD 322 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhcccCC
Confidence 3456789999999999999999987632 3599999999999999999999998754 9999999987531 126899
Q ss_pred EEEecchhhhhcc---ccCcchhhhH-------HHHHHHHHHHHHcccCCcEEEEEcCCC----chHHH-HHHHHc-CCc
Q 022698 191 VVVSAAFFHTVGK---EYGHRTVEAA-------AERMRVLGEMVRVLKPGGVGVVWDLLH----VPEYV-RRLQEL-KME 254 (293)
Q Consensus 191 ~Iv~~~~~~~~~~---~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~-~~l~~~-gf~ 254 (293)
+|++++|...... .+...-.... .-...+++.+.++|||||.+++..+.. .+... ..+++. +|+
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~ 402 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFE 402 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcE
Confidence 9999988643221 1110000001 123468999999999999999866543 23333 345544 365
Q ss_pred ceEE
Q 022698 255 DIRV 258 (293)
Q Consensus 255 ~~~~ 258 (293)
.+.+
T Consensus 403 ~~~~ 406 (444)
T PRK14902 403 LVPL 406 (444)
T ss_pred Eecc
Confidence 5443
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=105.22 Aligned_cols=106 Identities=26% Similarity=0.305 Sum_probs=85.5
Q ss_pred EEEeCCHHHHHHHHHHHHhc--CCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHH
Q 022698 147 VGLDCKKRTTLSTLRTAKME--GVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV 224 (293)
Q Consensus 147 ~~vDis~~~l~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (293)
+|+|+|++|++.|+++.+.. +...+++++++|+.++|+++++||+|+++..+++++ ++..++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~------------d~~~~l~ei~ 68 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV------------DRLRAMKEMY 68 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC------------CHHHHHHHHH
Confidence 48999999999998776532 223469999999999998888999999999999888 8899999999
Q ss_pred HcccCCcEEEEEcCC-------------------------------------------CchHHHHHHHHcCCcceEEeee
Q 022698 225 RVLKPGGVGVVWDLL-------------------------------------------HVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 225 ~~LkpgG~l~~~~~~-------------------------------------------~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
++|||||.+++.+.. ..+++.++|+++||+.++....
T Consensus 69 rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~ 148 (160)
T PLN02232 69 RVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEI 148 (160)
T ss_pred HHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEEC
Confidence 999999999876532 2236777888999998866544
Q ss_pred ecc
Q 022698 262 VTA 264 (293)
Q Consensus 262 ~~~ 264 (293)
..+
T Consensus 149 ~~g 151 (160)
T PLN02232 149 SGG 151 (160)
T ss_pred cch
Confidence 333
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.5e-12 Score=103.64 Aligned_cols=143 Identities=25% Similarity=0.277 Sum_probs=94.9
Q ss_pred cCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------
Q 022698 110 VNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------ 183 (293)
Q Consensus 110 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 183 (293)
...+.++.+|||+|||+|.++..+++.... ..+++++|+|+.+ .. +++.+.+.|+.+..
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~---~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGG---KGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCC---CceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHH
Confidence 334567889999999999999988877532 3589999999863 11 23778888887632
Q ss_pred --CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEEe
Q 022698 184 --FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 184 --~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~~ 259 (293)
.+.++||+|+++.+.+... .+.............+++.+.++|+|||.+++.... ...++...++. +|..+++.
T Consensus 92 ~~~~~~~~D~V~~~~~~~~~g-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~-~~~~~~~~ 169 (188)
T TIGR00438 92 ERVGDDKVDVVMSDAAPNISG-YWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK-LFEKVKVT 169 (188)
T ss_pred HHhCCCCccEEEcCCCCCCCC-CccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh-hhceEEEe
Confidence 2456799999975421100 000011111224568899999999999999884322 22355555544 48888888
Q ss_pred eeeccceecc
Q 022698 260 ERVTAFMVSS 269 (293)
Q Consensus 260 ~~~~~~~~~~ 269 (293)
++..+.....
T Consensus 170 ~~~~~~~~~~ 179 (188)
T TIGR00438 170 KPQASRKRSA 179 (188)
T ss_pred CCCCCCcccc
Confidence 8888765443
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=121.69 Aligned_cols=148 Identities=18% Similarity=0.239 Sum_probs=103.5
Q ss_pred hcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 87 AAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 87 ~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
+...|+..+......+.+.+.+.+. ..++.+|||+|||+|.+++.+++.. .+|+++|+|+.+++.|++|+..+
T Consensus 265 ~~~~F~Q~N~~~~~~l~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~------~~V~~vE~~~~av~~a~~n~~~~ 337 (431)
T TIGR00479 265 SARDFFQVNSGQNEKLVDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQA------KSVVGIEVVPESVEKAQQNAELN 337 (431)
T ss_pred CCCceeecCHHHHHHHHHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC------CEEEEEEcCHHHHHHHHHHHHHh
Confidence 3344554444444556666665553 3556799999999999999988762 48999999999999999999998
Q ss_pred CCCCceEEEEcCCCCC----CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-CCc
Q 022698 167 GVQEYVTAREGDVRSL----PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-LHV 241 (293)
Q Consensus 167 ~~~~~v~~~~~d~~~~----~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~ 241 (293)
++ ++++|+.+|+.+. +..+++||+|+++||...+. ..+++.+.+ ++|++.+++++. .+.
T Consensus 338 ~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~--------------~~~l~~l~~-l~~~~ivyvsc~p~tl 401 (431)
T TIGR00479 338 GI-ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGCA--------------AEVLRTIIE-LKPERIVYVSCNPATL 401 (431)
T ss_pred CC-CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCCC--------------HHHHHHHHh-cCCCEEEEEcCCHHHH
Confidence 87 5699999998652 12345799999998864322 344554443 889888777532 222
Q ss_pred hHHHHHHHHcCCcceE
Q 022698 242 PEYVRRLQELKMEDIR 257 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~ 257 (293)
..-...|.+.||....
T Consensus 402 ard~~~l~~~gy~~~~ 417 (431)
T TIGR00479 402 ARDLEFLCKEGYGITW 417 (431)
T ss_pred HHHHHHHHHCCeeEEE
Confidence 3345566778887443
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.9e-13 Score=109.59 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=104.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC----CCCCCcccEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL----PFGDNYFDVV 192 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~I 192 (293)
.+|||+|||.|.....+++..+.. +.+++++|.|+.|++..+++..... .++...+.|+... +...+++|.|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~--~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNN--RLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCC--CeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceE
Confidence 389999999999999998876632 3799999999999999998877654 4566667776542 3456899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------------CCc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-------------------------------LHV 241 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------------------~~~ 241 (293)
++..++..++ .+.....++++.++|||||.+++-|+ ...
T Consensus 149 t~IFvLSAi~----------pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~ 218 (264)
T KOG2361|consen 149 TLIFVLSAIH----------PEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTE 218 (264)
T ss_pred EEEEEEeccC----------hHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccH
Confidence 9999998887 34778899999999999999998553 134
Q ss_pred hHHHHHHHHcCCcceEEe
Q 022698 242 PEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~~~ 259 (293)
++..+++.++||..++..
T Consensus 219 eeL~~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 219 EELDELFTKAGFEEVQLE 236 (264)
T ss_pred HHHHHHHHhcccchhccc
Confidence 578899999999987764
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-12 Score=119.09 Aligned_cols=124 Identities=22% Similarity=0.218 Sum_probs=93.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
...++.+|||+|||+|..+..+++.... ..+|+++|+|+.+++.++++++..|+. ++.+.+.|+.+++ ++++||+
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~---~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~fD~ 321 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQN---RGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQPDA 321 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCCCCE
Confidence 3456789999999999999999887643 359999999999999999999998874 6899999998764 4568999
Q ss_pred EEecchhhhhcc---ccCcc-------hhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 192 VVSAAFFHTVGK---EYGHR-------TVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 192 Iv~~~~~~~~~~---~~~~~-------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
|++.+|...... .+... ...-......++.++.+.|+|||++++.++..
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999877533221 11100 00001234568999999999999999977654
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=107.34 Aligned_cols=120 Identities=10% Similarity=0.013 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
.+.+.+.++..+....++.+|||+|||+|.+++.++... ..+|+++|+++.+++.+++|++.++. .++.++++|
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-----a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D 110 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-----AAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTN 110 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEch
Confidence 344555566555433456799999999999998655442 25999999999999999999999886 469999999
Q ss_pred CCCC-CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHH--cccCCcEEEEEc
Q 022698 179 VRSL-PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVR--VLKPGGVGVVWD 237 (293)
Q Consensus 179 ~~~~-~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~ 237 (293)
+.+. +...++||+|+++|||..- -....++.+.. +|+|+|++++..
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy~~g-------------~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPFRKG-------------LLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred HHHHHhhcCCCceEEEECCCCCCC-------------hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 8763 2223569999999997532 22344454543 589999888854
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=117.83 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=103.6
Q ss_pred hHhhhcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHH
Q 022698 83 CLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT 162 (293)
Q Consensus 83 ~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~ 162 (293)
.+.+....|+..+....+.+...+.+.+.. .++.+|||+|||+|.+++.++.. +.+|+++|+|+.+++.|++|
T Consensus 202 ~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~-~~~~~vLDL~cG~G~~~l~la~~------~~~v~~vE~~~~av~~a~~N 274 (374)
T TIGR02085 202 PLVIRPQSFFQTNPKVAAQLYATARQWVRE-IPVTQMWDLFCGVGGFGLHCAGP------DTQLTGIEIESEAIACAQQS 274 (374)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHHHHh-cCCCEEEEccCCccHHHHHHhhc------CCeEEEEECCHHHHHHHHHH
Confidence 344445556655555556666555554422 24568999999999999988854 35899999999999999999
Q ss_pred HHhcCCCCceEEEEcCCCCCCC-CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-CC
Q 022698 163 AKMEGVQEYVTAREGDVRSLPF-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-LH 240 (293)
Q Consensus 163 ~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~ 240 (293)
++.+++. +++|.++|+.+... ..++||+|+++||..... ..+++.+. .++|++++++... .+
T Consensus 275 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~--------------~~~l~~l~-~~~p~~ivyvsc~p~T 338 (374)
T TIGR02085 275 AQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPPRRGIG--------------KELCDYLS-QMAPKFILYSSCNAQT 338 (374)
T ss_pred HHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCCCCCCc--------------HHHHHHHH-hcCCCeEEEEEeCHHH
Confidence 9999874 69999999976421 124699999999975432 24444444 4799988888542 22
Q ss_pred chHHHHHHHHcCCcceEE
Q 022698 241 VPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 241 ~~~~~~~l~~~gf~~~~~ 258 (293)
...-...| .||...++
T Consensus 339 laRDl~~L--~gy~l~~~ 354 (374)
T TIGR02085 339 MAKDIAEL--SGYQIERV 354 (374)
T ss_pred HHHHHHHh--cCceEEEE
Confidence 22222333 68875544
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=107.14 Aligned_cols=119 Identities=24% Similarity=0.365 Sum_probs=90.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-C-CCCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-L-PFGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~I 192 (293)
++.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++ + +++++.|+.+ + ++++++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-----~~~~~giD~s~~~i~~a~~~----~----~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-----QVRGYGIEIDQDGVLACVAR----G----VNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-----CCcEEEEeCCHHHHHHHHHc----C----CeEEEEEhhhcccccCCCCcCEE
Confidence 56799999999999988776542 35789999999998877542 2 5788888865 3 3556789999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE---------------------------------cCC
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW---------------------------------DLL 239 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~---------------------------------~~~ 239 (293)
+++.++++++ ++..+++++.+.++++. +.+. ...
T Consensus 80 i~~~~l~~~~------------d~~~~l~e~~r~~~~~i-i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (194)
T TIGR02081 80 ILSQTLQATR------------NPEEILDEMLRVGRHAI-VSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFC 146 (194)
T ss_pred EEhhHhHcCc------------CHHHHHHHHHHhCCeEE-EEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccC
Confidence 9999999998 88889999988776532 1110 012
Q ss_pred CchHHHHHHHHcCCcceEEe
Q 022698 240 HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 240 ~~~~~~~~l~~~gf~~~~~~ 259 (293)
..+++.++++++||+.++..
T Consensus 147 s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 147 TIADFEDLCGELNLRILDRA 166 (194)
T ss_pred cHHHHHHHHHHCCCEEEEEE
Confidence 35678899999999987764
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=103.76 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=71.7
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+. ..++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++.. .++++++.+|+.+++
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~------~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~ 72 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER------AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFD 72 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc------CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCC
Confidence 34555543 456679999999999999999876 25899999999999999988754 246899999999887
Q ss_pred CCCCcccEEEecchhhhh
Q 022698 184 FGDNYFDVVVSAAFFHTV 201 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~ 201 (293)
+++.+||.|++|+||+..
T Consensus 73 ~~~~~~d~vi~n~Py~~~ 90 (169)
T smart00650 73 LPKLQPYKVVGNLPYNIS 90 (169)
T ss_pred ccccCCCEEEECCCcccH
Confidence 666679999999999753
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=110.56 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=88.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-----CCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-----FGD 186 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~ 186 (293)
..+..+|||+|||+|..++.+++.++. +++++++|+++++++.|++|++.+++.++++++.+|+.+. + .+.
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~---~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPE---DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 345679999999999999999887653 3599999999999999999999999988899999999763 1 114
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++||+|+....- .....++..+.+.|+|||.+++-+
T Consensus 143 ~~fD~VfiDa~k---------------~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 143 PEFDFAFVDADK---------------PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCCCEEEECCCH---------------HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 689999987432 145578899999999999988743
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=108.29 Aligned_cols=116 Identities=22% Similarity=0.347 Sum_probs=83.9
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
..++|+|||+|..++.++.++. +|+|+|+|+.|++.|++.....-......+...++.++.-.+++.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k------~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK------EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh------hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhh
Confidence 3799999999988888887754 8999999999999988775433211112333333333322378999999999
Q ss_pred hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCc-EEEEEcCC----CchHHHHHHHHc
Q 022698 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG-VGVVWDLL----HVPEYVRRLQEL 251 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~----~~~~~~~~l~~~ 251 (293)
.+|++ |..++++++.|+||+.| .+.++... ..++....+.+.
T Consensus 109 a~HWF-------------dle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~ 155 (261)
T KOG3010|consen 109 AVHWF-------------DLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRL 155 (261)
T ss_pred hHHhh-------------chHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHH
Confidence 99998 67899999999999876 76665544 345555555444
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.1e-12 Score=111.53 Aligned_cols=115 Identities=20% Similarity=0.161 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
.+.+...+++.+. ..++.+|||+|||+|.++..+++..+. ...|+++|+++.+++.|+++++.++. +++.++.+|
T Consensus 65 ~p~l~a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~---~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD 139 (322)
T PRK13943 65 QPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGE---KGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGD 139 (322)
T ss_pred cHHHHHHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCC
Confidence 4556666666653 456789999999999999999887542 23799999999999999999998886 568999999
Q ss_pred CCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 179 ~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
..+.....++||+|++.......+ ..+.+.|+|||.+++.
T Consensus 140 ~~~~~~~~~~fD~Ii~~~g~~~ip------------------~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 140 GYYGVPEFAPYDVIFVTVGVDEVP------------------ETWFTQLKEGGRVIVP 179 (322)
T ss_pred hhhcccccCCccEEEECCchHHhH------------------HHHHHhcCCCCEEEEE
Confidence 876544446799999975443332 2356789999998874
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-11 Score=97.49 Aligned_cols=123 Identities=20% Similarity=0.125 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+.+|+|+|||||.+++..+..-+ .+|+|+|+++++++.+++|+.+.+ .++.|+.+|+.+. .+++|.++.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-----~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~~---~~~~dtvim 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-----SRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSDF---RGKFDTVIM 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-----cEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhhc---CCccceEEE
Confidence 456899999999999988876533 699999999999999999999843 5699999999886 467999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEe
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
|||+...... + | ..++..+.+.- ..+.-+.......-+.....++|+......
T Consensus 115 NPPFG~~~rh---a------D-r~Fl~~Ale~s--~vVYsiH~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 115 NPPFGSQRRH---A------D-RPFLLKALEIS--DVVYSIHKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred CCCCcccccc---C------C-HHHHHHHHHhh--heEEEeeccccHHHHHHHHHhcCCeEEEEE
Confidence 9998654210 0 1 23433333322 122223344444556667788998876664
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-11 Score=98.90 Aligned_cols=141 Identities=17% Similarity=0.177 Sum_probs=105.5
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC--------CCCcc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF--------GDNYF 189 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f 189 (293)
+|||||||||..+.++++.+| .....-.|+++..+...+......+..+-..-+..|+...+. ..++|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP----~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALP----HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCC----CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCc
Confidence 599999999999999999998 468889999999877777766666554333445566655321 23589
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------------------Cc
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----------------------------HV 241 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------------------~~ 241 (293)
|.|+|.+.+|..+ ......+++.+.++|++||.|++++.. ..
T Consensus 104 D~i~~~N~lHI~p----------~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~ 173 (204)
T PF06080_consen 104 DAIFCINMLHISP----------WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDI 173 (204)
T ss_pred ceeeehhHHHhcC----------HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCH
Confidence 9999999999887 457788999999999999999997643 12
Q ss_pred hHHHHHHHHcCCcceEEeeeeccceecceeeeeec
Q 022698 242 PEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
+++.++..+.|++..+.++.-..+. ++.++|
T Consensus 174 e~v~~lA~~~GL~l~~~~~MPANN~----~Lvfrk 204 (204)
T PF06080_consen 174 EDVEALAAAHGLELEEDIDMPANNL----LLVFRK 204 (204)
T ss_pred HHHHHHHHHCCCccCcccccCCCCe----EEEEeC
Confidence 3666777778888776666555443 555543
|
The function of this family is unknown. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=89.81 Aligned_cols=101 Identities=37% Similarity=0.493 Sum_probs=82.1
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-CCCcccEEEecc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-GDNYFDVVVSAA 196 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~ 196 (293)
+|+|+|||+|..+..+++ .+ ..+++++|+++.++..+++.....+ ..++.+...|..+... ..++||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~----~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GP----GARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CC----CCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEcc
Confidence 589999999999988876 22 4699999999999998885433332 3568999999987643 457899999999
Q ss_pred hhhh-hccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 197 FFHT-VGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 197 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
++++ .. ....+++.+.+.|+|||.+++.
T Consensus 75 ~~~~~~~------------~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHLVE------------DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeehhh------------HHHHHHHHHHHHcCCCCEEEEE
Confidence 9887 44 7789999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-11 Score=99.52 Aligned_cols=149 Identities=18% Similarity=0.209 Sum_probs=101.9
Q ss_pred chHHHHHHHHHhcCCCCC--CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q 022698 98 LHYDMAQRMVGSVNDWST--VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~ 175 (293)
.+.++.+..++.+. +.+ ..-|||||||+|-.+..+... +...+|+|||+.|++.|.+.--+ -.++
T Consensus 32 IQ~em~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~------Gh~wiGvDiSpsML~~a~~~e~e------gdli 98 (270)
T KOG1541|consen 32 IQAEMAERALELLA-LPGPKSGLILDIGCGSGLSGSVLSDS------GHQWIGVDISPSMLEQAVERELE------GDLI 98 (270)
T ss_pred ehHHHHHHHHHHhh-CCCCCCcEEEEeccCCCcchheeccC------CceEEeecCCHHHHHHHHHhhhh------cCee
Confidence 45567777777664 232 457999999999887666543 46899999999999999873211 2467
Q ss_pred EcCCCC-CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHH----HHHH
Q 022698 176 EGDVRS-LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVR----RLQE 250 (293)
Q Consensus 176 ~~d~~~-~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~----~l~~ 250 (293)
.+|+-+ +|+..+.||-+++...+.|+-. .......+......|+..++.+|++|++.++--+...++..+ .-..
T Consensus 99 l~DMG~GlpfrpGtFDg~ISISAvQWLcn-A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~ 177 (270)
T KOG1541|consen 99 LCDMGEGLPFRPGTFDGVISISAVQWLCN-ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMK 177 (270)
T ss_pred eeecCCCCCCCCCccceEEEeeeeeeecc-cCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHh
Confidence 788855 6788999999999877765431 111122223356678999999999999988844444444333 3346
Q ss_pred cCCcceEEee
Q 022698 251 LKMEDIRVSE 260 (293)
Q Consensus 251 ~gf~~~~~~~ 260 (293)
+||..--+..
T Consensus 178 aGF~GGlvVd 187 (270)
T KOG1541|consen 178 AGFGGGLVVD 187 (270)
T ss_pred hccCCceeee
Confidence 7887554443
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=101.91 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=93.8
Q ss_pred HHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-cCCCCCC-
Q 022698 106 MVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE-GDVRSLP- 183 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~-~d~~~~~- 183 (293)
++..+....+.++|||||++.|..++.++..++. ..+++++|+++++.+.|++|++..|+.+++.++. +|..+.-
T Consensus 50 ~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~ 126 (219)
T COG4122 50 LLRLLARLSGPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLS 126 (219)
T ss_pred HHHHHHHhcCCceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHH
Confidence 3434434457789999999999999999999885 3599999999999999999999999999898888 4776531
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
...++||+|+...- ..+...+++.+.++|+|||.+++-+..
T Consensus 127 ~~~~~~fDliFIDad---------------K~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 127 RLLDGSFDLVFIDAD---------------KADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred hccCCCccEEEEeCC---------------hhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 23589999997532 125568999999999999999985543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=98.15 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=92.8
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-----------c
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-----------E 166 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~-----------~ 166 (293)
.++.+.+++-... ..++.+||..|||.|.-+..|+.+ +.+|+|+|+|+.+++.+.+.... .
T Consensus 28 pnp~L~~~~~~l~--~~~~~rvLvPgCGkg~D~~~LA~~------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~ 99 (226)
T PRK13256 28 PNEFLVKHFSKLN--INDSSVCLIPMCGCSIDMLFFLSK------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKL 99 (226)
T ss_pred CCHHHHHHHHhcC--CCCCCeEEEeCCCChHHHHHHHhC------CCcEEEEecCHHHHHHHHHHcCCCcceecccccce
Confidence 4555556554432 235679999999999999999876 56999999999999987652110 0
Q ss_pred CCCCceEEEEcCCCCCCCC---CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 167 GVQEYVTAREGDVRSLPFG---DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 167 ~~~~~v~~~~~d~~~~~~~---~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
--..++++.++|+.+++.. .++||+|+-...++.++ .+...+..+.+.++|+|||.++++.
T Consensus 100 ~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alp----------p~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 100 YKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALP----------NDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred eccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCC----------HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 0123589999999998532 36899999999999988 4467889999999999999887743
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=108.18 Aligned_cols=133 Identities=19% Similarity=0.154 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--C--CCceEEEEcCCCCCC-CCCCcc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--V--QEYVTAREGDVRSLP-FGDNYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--~--~~~v~~~~~d~~~~~-~~~~~f 189 (293)
.+.+||+||||+|..+..++++.+ ..+|+++|+++.+++.+++++...+ . .++++++.+|+...- ...++|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~----~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPS----VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCC----CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcc
Confidence 467999999999999998886522 3589999999999999999876432 1 467999999987632 235789
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC---CCch---HHHHHHHHcCCcceEEee
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL---LHVP---EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~---~~~~~l~~~gf~~~~~~~ 260 (293)
|+|+++.+-...+ .. .--..++++.+.+.|+|||++++... ...+ ...+.+++. |..+....
T Consensus 152 DvIi~D~~dp~~~---~~-----~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~~ 219 (283)
T PRK00811 152 DVIIVDSTDPVGP---AE-----GLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV-FPIVRPYQ 219 (283)
T ss_pred cEEEECCCCCCCc---hh-----hhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH-CCCEEEEE
Confidence 9999974321111 00 00236789999999999999887321 1122 234444555 66666543
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=104.08 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=91.4
Q ss_pred HHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-
Q 022698 106 MVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P- 183 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~- 183 (293)
++..+....+.++||||||++|..++.++..++. +.+++++|.++++.+.|+++++..|+.++++++.+|+.+. +
T Consensus 109 lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~---~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 109 LLAMLVQILGAERCIEVGVYTGYSSLAVALVLPE---SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKS 185 (278)
T ss_pred HHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence 3333333455789999999999999999987764 3489999999999999999999999988999999998662 1
Q ss_pred C----CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 184 F----GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 184 ~----~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+ ..++||+|+....- .+...+++.+.++|+|||.+++-
T Consensus 186 l~~~~~~~~FD~VFIDa~K---------------~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDADK---------------RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHhcccCCCCCEEEECCCH---------------HHHHHHHHHHHHhcCCCcEEEEe
Confidence 1 13589999987542 26678889999999999999873
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=108.47 Aligned_cols=157 Identities=13% Similarity=0.155 Sum_probs=103.8
Q ss_pred hcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 87 AAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 87 ~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
....||..+....+.+.+++.+.+.. .+.++||++||+|.++..+++.. .+|+++|+|+.+++.+++|+..+
T Consensus 180 ~~~sF~Q~N~~~~e~l~~~v~~~~~~--~~~~vLDl~~G~G~~sl~la~~~------~~v~~vE~~~~ai~~a~~N~~~~ 251 (362)
T PRK05031 180 VENSFTQPNAAVNEKMLEWALDATKG--SKGDLLELYCGNGNFTLALARNF------RRVLATEISKPSVAAAQYNIAAN 251 (362)
T ss_pred CCCCeeccCHHHHHHHHHHHHHHhhc--CCCeEEEEeccccHHHHHHHhhC------CEEEEEECCHHHHHHHHHHHHHh
Confidence 34556665555666777777766532 23579999999999999888763 38999999999999999999999
Q ss_pred CCCCceEEEEcCCCCCC--CC--------------CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC
Q 022698 167 GVQEYVTAREGDVRSLP--FG--------------DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG 230 (293)
Q Consensus 167 ~~~~~v~~~~~d~~~~~--~~--------------~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 230 (293)
++. +++|+.+|+.+.- .. ..+||+|+.+||...+. ..+++.+.+ |+
T Consensus 252 ~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~--------------~~~l~~l~~---~~ 313 (362)
T PRK05031 252 GID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLD--------------DETLKLVQA---YE 313 (362)
T ss_pred CCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCc--------------HHHHHHHHc---cC
Confidence 874 6999999986631 10 12589999999964332 344444443 67
Q ss_pred cEEEEEcCC-CchHHHHHHHHcCCcceEEeeeeccceeccee
Q 022698 231 GVGVVWDLL-HVPEYVRRLQELKMEDIRVSERVTAFMVSSHI 271 (293)
Q Consensus 231 G~l~~~~~~-~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 271 (293)
+++|+.+.. +...-...|.+ ||...++. -+.-|+...|+
T Consensus 314 ~ivyvSC~p~tlarDl~~L~~-gY~l~~v~-~~DmFPqT~Hv 353 (362)
T PRK05031 314 RILYISCNPETLCENLETLSQ-THKVERFA-LFDQFPYTHHM 353 (362)
T ss_pred CEEEEEeCHHHHHHHHHHHcC-CcEEEEEE-EcccCCCCCcE
Confidence 777774432 22222334443 88755443 33334433343
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=97.54 Aligned_cols=88 Identities=30% Similarity=0.460 Sum_probs=73.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-CC-CCCCcccE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-LP-FGDNYFDV 191 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~fD~ 191 (293)
.++.+|||+|||.|.+...|.+.. +.+..|+|++++.+..+.++ | +.++++|+.+ ++ +++++||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k-----~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEK-----QVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhc-----CCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCCCCccE
Confidence 567899999999999988777652 47999999999977655544 4 6789999976 32 78999999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHc
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRV 226 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (293)
||++..+..+. +|..+++++.|+
T Consensus 79 VIlsqtLQ~~~------------~P~~vL~EmlRV 101 (193)
T PF07021_consen 79 VILSQTLQAVR------------RPDEVLEEMLRV 101 (193)
T ss_pred EehHhHHHhHh------------HHHHHHHHHHHh
Confidence 99999999988 899999999776
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=100.56 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=82.1
Q ss_pred chHHHHHHHHH-hcCCC--CCCCeEEEEcCCCChHHHHHHHHhhh-----cCCCcEEEEEeCCHHHHHHHHHHH------
Q 022698 98 LHYDMAQRMVG-SVNDW--STVKTALDIGCGRGILLNAVATQFKK-----TGSLGRVVGLDCKKRTTLSTLRTA------ 163 (293)
Q Consensus 98 ~~~~~~~~l~~-~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~-----~~~~~~v~~vDis~~~l~~a~~~~------ 163 (293)
.-+.+.+.++. .+... .+..+|+..||++|.-+..++-.+.+ .+...+|+|+|+|+.+++.|++-.
T Consensus 11 ~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~ 90 (196)
T PF01739_consen 11 QFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSL 90 (196)
T ss_dssp HHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGG
T ss_pred HHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHH
Confidence 33445555552 22211 24578999999999988888776654 121469999999999999987631
Q ss_pred -------------Hhc--------CCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHH
Q 022698 164 -------------KME--------GVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGE 222 (293)
Q Consensus 164 -------------~~~--------~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (293)
... .+.++|.|.+.|+.+.+...+.||+|+|.+++.++. .+....+++.
T Consensus 91 ~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~----------~~~~~~vl~~ 160 (196)
T PF01739_consen 91 RGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFD----------PETQQRVLRR 160 (196)
T ss_dssp TTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-----------HHHHHHHHHH
T ss_pred hhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeC----------HHHHHHHHHH
Confidence 000 112468999999988333467899999999999887 4467889999
Q ss_pred HHHcccCCcEEEEEc
Q 022698 223 MVRVLKPGGVGVVWD 237 (293)
Q Consensus 223 ~~~~LkpgG~l~~~~ 237 (293)
+++.|+|||.|++-.
T Consensus 161 l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 161 LHRSLKPGGYLFLGH 175 (196)
T ss_dssp HGGGEEEEEEEEE-T
T ss_pred HHHHcCCCCEEEEec
Confidence 999999999999944
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-11 Score=109.68 Aligned_cols=144 Identities=19% Similarity=0.206 Sum_probs=111.9
Q ss_pred cccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC
Q 022698 88 AGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG 167 (293)
Q Consensus 88 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~ 167 (293)
...||..+....+.+..++++.+. ..++.++||+-||.|.+++.+++. ..+|+|+|+++++++.|++|++.|+
T Consensus 267 ~~sF~Q~N~~~~ekl~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~------~~~V~gvEi~~~aV~~A~~NA~~n~ 339 (432)
T COG2265 267 PRSFFQVNPAVAEKLYETALEWLE-LAGGERVLDLYCGVGTFGLPLAKR------VKKVHGVEISPEAVEAAQENAAANG 339 (432)
T ss_pred CCCceecCHHHHHHHHHHHHHHHh-hcCCCEEEEeccCCChhhhhhccc------CCEEEEEecCHHHHHHHHHHHHHcC
Confidence 346666666677778888888875 356789999999999999999966 3599999999999999999999999
Q ss_pred CCCceEEEEcCCCCCCCC---CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc-CCCchH
Q 022698 168 VQEYVTAREGDVRSLPFG---DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD-LLHVPE 243 (293)
Q Consensus 168 ~~~~v~~~~~d~~~~~~~---~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~ 243 (293)
+.+ ++|..+++.+.... ...+|+|+.+||=.-+. ..+++.+. .++|..++++++ ..+...
T Consensus 340 i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~--------------~~~lk~l~-~~~p~~IvYVSCNP~TlaR 403 (432)
T COG2265 340 IDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD--------------REVLKQLA-KLKPKRIVYVSCNPATLAR 403 (432)
T ss_pred CCc-EEEEeCCHHHHhhhccccCCCCEEEECCCCCCCC--------------HHHHHHHH-hcCCCcEEEEeCCHHHHHH
Confidence 865 99999999876422 35799999998854433 34555555 468888888854 334455
Q ss_pred HHHHHHHcCCc
Q 022698 244 YVRRLQELKME 254 (293)
Q Consensus 244 ~~~~l~~~gf~ 254 (293)
-...|.+.||.
T Consensus 404 Dl~~L~~~gy~ 414 (432)
T COG2265 404 DLAILASTGYE 414 (432)
T ss_pred HHHHHHhCCeE
Confidence 66778888887
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=102.80 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=87.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-----CCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-----FGDN 187 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~ 187 (293)
....+||||||++|..++.+++.+|+ +++++.+|++++..+.|+++++..|+.++++++.+|+.+. + ...+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~---~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPE---DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTT---TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcc---cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 34679999999999999999998875 4699999999999999999999999988999999998752 1 1135
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+||+|+....-. +...+++.+.++|+|||.+++-+.
T Consensus 121 ~fD~VFiDa~K~---------------~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 121 QFDFVFIDADKR---------------NYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp SEEEEEEESTGG---------------GHHHHHHHHHHHEEEEEEEEEETT
T ss_pred ceeEEEEccccc---------------chhhHHHHHhhhccCCeEEEEccc
Confidence 799999875322 556788888899999999998543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-10 Score=95.82 Aligned_cols=141 Identities=14% Similarity=0.135 Sum_probs=113.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---CCCCccc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---FGDNYFD 190 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD 190 (293)
..+-+||||.||.|......+...+.. ..++...|.|+..++..++..+..|+.+.++|.+.|+.+.. -.+...|
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPER--PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 456799999999999998888887753 25899999999999999999999999887799999998742 1245679
Q ss_pred EEEecchhhhhccccCcchhhhHHH-HHHHHHHHHHcccCCcEEEEEcCCC--------------------------chH
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAE-RMRVLGEMVRVLKPGGVGVVWDLLH--------------------------VPE 243 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~--------------------------~~~ 243 (293)
+++++..|..++ +.+ ....++.+.+.+.|||.++..+... -.+
T Consensus 212 l~iVsGL~ElF~----------Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 212 LAIVSGLYELFP----------DNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAE 281 (311)
T ss_pred EEEEecchhhCC----------cHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHH
Confidence 999999998887 223 4557899999999999999865322 237
Q ss_pred HHHHHHHcCCcceEEeeeeccce
Q 022698 244 YVRRLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 244 ~~~~l~~~gf~~~~~~~~~~~~~ 266 (293)
..++.+++||+.+...-|..|..
T Consensus 282 mD~Lv~~aGF~K~~q~ID~~GIF 304 (311)
T PF12147_consen 282 MDQLVEAAGFEKIDQRIDEWGIF 304 (311)
T ss_pred HHHHHHHcCCchhhheeccCCce
Confidence 88888999999888877777744
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=103.86 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=96.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH-----HhcCC-CCceEEEEcCCCCC-CCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA-----KMEGV-QEYVTAREGDVRSL-PFGD 186 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~-----~~~~~-~~~v~~~~~d~~~~-~~~~ 186 (293)
..+.+||++|||+|..+..+++..+ ..+|+++|+++.+++.|++.. ..... .++++++.+|+.+. ....
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~----v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET----VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC----CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence 3456999999999998887776532 359999999999999999631 11111 36899999999873 2335
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--ch----HHHHHHHHcCCcceEEee
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VP----EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~----~~~~~l~~~gf~~~~~~~ 260 (293)
++||+|+++.+-.... . ....--.++++.+.+.|+|||++++..... .+ .+...+++.|+.......
T Consensus 225 ~~YDVIIvDl~DP~~~---~----~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 225 SLYDVIIIDFPDPATE---L----LSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred CCccEEEEcCCCcccc---c----hhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEE
Confidence 6899999984311000 0 001123579999999999999988743222 11 246677888888776665
Q ss_pred eeccc
Q 022698 261 RVTAF 265 (293)
Q Consensus 261 ~~~~~ 265 (293)
.+..|
T Consensus 298 ~vPsy 302 (374)
T PRK01581 298 IVPSF 302 (374)
T ss_pred ecCCC
Confidence 55444
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=95.77 Aligned_cols=117 Identities=10% Similarity=0.013 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
.+.+.+...+.....+.++||++||+|.+++.++.+.. .+|+++|.++.+++.+++|++.++..+++++++.|+.
T Consensus 35 ~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga-----~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 35 VVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA-----KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC-----CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 33344444443333567999999999999999987632 4899999999999999999999988767999999995
Q ss_pred CC-C-C-CC-CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHH--HcccCCcEEEE
Q 022698 181 SL-P-F-GD-NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV--RVLKPGGVGVV 235 (293)
Q Consensus 181 ~~-~-~-~~-~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~ 235 (293)
+. . . .. ..||+|+..|||... .....++.+. .+|+++|.+++
T Consensus 110 ~~l~~~~~~~~~~dvv~~DPPy~~~-------------~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLDPPFFNG-------------ALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred HHHHHhhccCCCceEEEECcCCCCC-------------cHHHHHHHHHHCCCCCCCeEEEE
Confidence 52 1 1 12 248999988988642 2233344443 46888887766
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.2e-11 Score=95.99 Aligned_cols=120 Identities=22% Similarity=0.334 Sum_probs=79.8
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+...++...|-|+|||.+.++..+. + ..+|...|+-.. .+ .+..+|+...|
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~----~---~~~V~SfDLva~--------------n~--~Vtacdia~vP 117 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVP----N---KHKVHSFDLVAP--------------NP--RVTACDIANVP 117 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH------S------EEEEESS-S--------------ST--TEEES-TTS-S
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhcc----c---CceEEEeeccCC--------------CC--CEEEecCccCc
Confidence 4455666555556789999999999875432 1 247999998653 12 36789999999
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----CchHHHHHHHHcCCcceEEe
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~l~~~gf~~~~~~ 259 (293)
+++++.|++|++..+-.. +...+++++.|+|||||.|.+.+.. ......+.+++.||+.....
T Consensus 118 L~~~svDv~VfcLSLMGT-------------n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 118 LEDESVDVAVFCLSLMGT-------------NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp --TT-EEEEEEES---SS--------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred CCCCceeEEEEEhhhhCC-------------CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc
Confidence 999999999998766543 7889999999999999999997653 45678899999999987653
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-11 Score=107.30 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=97.8
Q ss_pred ccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 022698 89 GNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV 168 (293)
Q Consensus 89 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~ 168 (293)
.-||........++...+++.+....+..+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++
T Consensus 31 ~vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~----~~~V~a~Din~~Av~~a~~N~~~N~~ 106 (382)
T PRK04338 31 PVFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETG----VEKVTLNDINPDAVELIKKNLELNGL 106 (382)
T ss_pred CeeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 34676666777777777776654221346899999999999999987754 24899999999999999999999987
Q ss_pred CCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 169 QEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 169 ~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
. ++.+.+.|+..+....++||+|+++|+ . .+..++..+.+.+++||++++.
T Consensus 107 ~-~~~v~~~Da~~~l~~~~~fD~V~lDP~----G------------s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 107 E-NEKVFNKDANALLHEERKFDVVDIDPF----G------------SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C-ceEEEhhhHHHHHhhcCCCCEEEECCC----C------------CcHHHHHHHHHHhcCCCEEEEE
Confidence 4 467899998764211457999999875 2 3356777777789999999984
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.4e-11 Score=103.21 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=84.4
Q ss_pred ccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 91 FFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
.++.++-..+.+.+.+++.+. ..++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+..+
T Consensus 13 ~~GQnFL~d~~i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~------~~~V~avEiD~~li~~l~~~~~~~~~~~ 85 (294)
T PTZ00338 13 KFGQHILKNPLVLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQL------AKKVIAIEIDPRMVAELKKRFQNSPLAS 85 (294)
T ss_pred CCCccccCCHHHHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHh------CCcEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 445555567778888888764 567789999999999999988875 3489999999999999999988766556
Q ss_pred ceEEEEcCCCCCCCCCCcccEEEecchhhhhc
Q 022698 171 YVTAREGDVRSLPFGDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 171 ~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~ 202 (293)
+++++.+|+.+.++ .+||.|++|.||+...
T Consensus 86 ~v~ii~~Dal~~~~--~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 86 KLEVIEGDALKTEF--PYFDVCVANVPYQISS 115 (294)
T ss_pred cEEEEECCHhhhcc--cccCEEEecCCcccCc
Confidence 79999999987654 4689999999998654
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-11 Score=97.83 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
...+.||.|+|.|.++..++..+ ..+|-.+|.++..++.|++...... ....++.+..+.++..+.++||+|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-----f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-----FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC------SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-----cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEe
Confidence 45689999999999998765443 2499999999999999998765521 13368888888887555679999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc-----------C------CCchHHHHHHHHcCCcceE
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD-----------L------LHVPEYVRRLQELKMEDIR 257 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-----------~------~~~~~~~~~l~~~gf~~~~ 257 (293)
-.++.|+. +++..++|+++...|+|+|++++=+ . ...+.+.++++++|+..++
T Consensus 129 QW~lghLT----------D~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 129 QWCLGHLT----------DEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp ES-GGGS-----------HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEE
T ss_pred hHhhccCC----------HHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEE
Confidence 99999998 5689999999999999999999811 1 1235799999999999876
Q ss_pred Eeeeeccce
Q 022698 258 VSERVTAFM 266 (293)
Q Consensus 258 ~~~~~~~~~ 266 (293)
.. ...+|+
T Consensus 199 ~~-~Q~~fP 206 (218)
T PF05891_consen 199 EE-KQKGFP 206 (218)
T ss_dssp EE-E-TT--
T ss_pred ec-cccCCC
Confidence 54 334443
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=96.25 Aligned_cols=143 Identities=22% Similarity=0.291 Sum_probs=98.8
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-c------C---
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-E------G--- 167 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~-~------~--- 167 (293)
.++.+.+.+-. +. ..++.+||..|||.|.-...|+++ +.+|+|+|+|+.+++.+.+.... . .
T Consensus 22 ~~p~L~~~~~~-l~-~~~~~rvLvPgCG~g~D~~~La~~------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~ 93 (218)
T PF05724_consen 22 PNPALVEYLDS-LA-LKPGGRVLVPGCGKGYDMLWLAEQ------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKR 93 (218)
T ss_dssp STHHHHHHHHH-HT-TSTSEEEEETTTTTSCHHHHHHHT------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEE
T ss_pred CCHHHHHHHHh-cC-CCCCCeEEEeCCCChHHHHHHHHC------CCeEEEEecCHHHHHHHHHHhccCCCcccccceee
Confidence 44555554443 32 356679999999999999999876 57999999999999988433221 0 0
Q ss_pred -CCCceEEEEcCCCCCCCCC-CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE--EcCC----
Q 022698 168 -VQEYVTAREGDVRSLPFGD-NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV--WDLL---- 239 (293)
Q Consensus 168 -~~~~v~~~~~d~~~~~~~~-~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~--~~~~---- 239 (293)
-.+++++.++|+.+++... ++||+|.=...++.+++ +...+..+.+.++|+|||.+++ ....
T Consensus 94 ~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp----------~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~ 163 (218)
T PF05724_consen 94 YQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPP----------EMRERYAQQLASLLKPGGRGLLITLEYPQGEM 163 (218)
T ss_dssp ETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-G----------GGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS
T ss_pred ecCCceEEEEcccccCChhhcCCceEEEEecccccCCH----------HHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC
Confidence 1235789999999976432 57999999988888873 3678899999999999999433 2221
Q ss_pred -------CchHHHHHHHHcCCcceEEe
Q 022698 240 -------HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 240 -------~~~~~~~~l~~~gf~~~~~~ 259 (293)
..+++.+++. .+|+.....
T Consensus 164 ~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 164 EGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp SSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred CCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 1235666665 777755554
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.5e-11 Score=102.90 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=79.0
Q ss_pred ccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 91 FFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
.|+.++.....+.+.+++.+. ..++.+|||+|||+|.++..+++.. .+++|+|+++.+++.++++... +
T Consensus 19 ~~gq~fl~~~~i~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~------~~v~avE~d~~~~~~~~~~~~~----~ 87 (272)
T PRK00274 19 SLGQNFLIDENILDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERA------AKVTAVEIDRDLAPILAETFAE----D 87 (272)
T ss_pred ccCcCcCCCHHHHHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhC------CcEEEEECCHHHHHHHHHhhcc----C
Confidence 445555567778888887764 4567799999999999999998873 3899999999999999887642 4
Q ss_pred ceEEEEcCCCCCCCCCCcccEEEecchhhhh
Q 022698 171 YVTAREGDVRSLPFGDNYFDVVVSAAFFHTV 201 (293)
Q Consensus 171 ~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~ 201 (293)
+++++++|+.++++++-.+|.|++|+||+..
T Consensus 88 ~v~~i~~D~~~~~~~~~~~~~vv~NlPY~is 118 (272)
T PRK00274 88 NLTIIEGDALKVDLSELQPLKVVANLPYNIT 118 (272)
T ss_pred ceEEEEChhhcCCHHHcCcceEEEeCCccch
Confidence 5999999999876543225999999998754
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.4e-11 Score=102.10 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=87.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhc----CCCcEEEEEeCCHHHHHHHHHHH------------------Hh-------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKT----GSLGRVVGLDCKKRTTLSTLRTA------------------KM------- 165 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~----~~~~~v~~vDis~~~l~~a~~~~------------------~~------- 165 (293)
+..+|+..||+||.-+..++-.+.+. ....+|+|+|||+.+++.|++.. ..
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999999888887765442 11468999999999999998752 00
Q ss_pred -----cCCCCceEEEEcCCCCCCCC-CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 166 -----EGVQEYVTAREGDVRSLPFG-DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 166 -----~~~~~~v~~~~~d~~~~~~~-~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
..+..+|.|.+.|+.+.+++ .++||+|+|.+++.++. .+....+++++++.|+|||+|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~----------~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFD----------KTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCC----------HHHHHHHHHHHHHHhCCCcEEEEe
Confidence 11335689999999875432 57899999999998886 347889999999999999998874
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=100.56 Aligned_cols=99 Identities=19% Similarity=0.209 Sum_probs=80.2
Q ss_pred ccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 91 FFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
.++.++-..+.+.+.+++.+. ..++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++.. .+
T Consensus 6 ~~GQnfl~d~~~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~------~~~v~~vEid~~~~~~l~~~~~~---~~ 75 (258)
T PRK14896 6 KLGQHFLIDDRVVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKR------AKKVYAIELDPRLAEFLRDDEIA---AG 75 (258)
T ss_pred cCCccccCCHHHHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHhcc---CC
Confidence 345555567778888888764 456789999999999999999876 24899999999999999988754 24
Q ss_pred ceEEEEcCCCCCCCCCCcccEEEecchhhhh
Q 022698 171 YVTAREGDVRSLPFGDNYFDVVVSAAFFHTV 201 (293)
Q Consensus 171 ~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~ 201 (293)
++.++++|+.+.+++ .||.|++|+||+..
T Consensus 76 ~v~ii~~D~~~~~~~--~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 76 NVEIIEGDALKVDLP--EFNKVVSNLPYQIS 104 (258)
T ss_pred CEEEEEeccccCCch--hceEEEEcCCcccC
Confidence 699999999887653 48999999998753
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8e-11 Score=111.53 Aligned_cols=129 Identities=17% Similarity=0.128 Sum_probs=90.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-----CC-CCceEEEEcCCCCC-CCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-----GV-QEYVTAREGDVRSL-PFGD 186 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-----~~-~~~v~~~~~d~~~~-~~~~ 186 (293)
+++++|||+|||+|..+..++++ +. ..+++++|+++++++.++++.... .. .++++++..|..+. ....
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~---v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~ 371 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PD---VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA 371 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CC---cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC
Confidence 45679999999999999888864 21 259999999999999999853211 11 25799999998763 2234
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---C---chHHHHHHHHcCC
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---H---VPEYVRRLQELKM 253 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~---~~~~~~~l~~~gf 253 (293)
++||+|+++.+....+ ... .--..++++.+.+.|+|||.+++.... . ..+..+.+++.||
T Consensus 372 ~~fDvIi~D~~~~~~~---~~~----~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 372 EKFDVIIVDLPDPSNP---ALG----KLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCCEEEEeCCCCCCc---chh----ccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 6899999986533221 000 001256899999999999999883221 1 1357777888999
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=97.86 Aligned_cols=103 Identities=24% Similarity=0.351 Sum_probs=85.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
.+.+..+|+|||+|+|.++..+++..| +.+++..|. |..++.+++ .+++++..+|+.+ +++. +|+
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P----~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~-~~P~--~D~ 161 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYP----NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFD-PLPV--ADV 161 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHST----TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTT-CCSS--ESE
T ss_pred cccCccEEEeccCcchHHHHHHHHHCC----CCcceeecc-Hhhhhcccc-------ccccccccccHHh-hhcc--ccc
Confidence 355667899999999999999999988 579999999 888887777 4679999999984 5555 999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC--cEEEEEcCC
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG--GVGVVWDLL 239 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~~ 239 (293)
++...++|..+ +++-..+|+++++.|+|| |+|++++..
T Consensus 162 ~~l~~vLh~~~----------d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 162 YLLRHVLHDWS----------DEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp EEEESSGGGS-----------HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred eeeehhhhhcc----------hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 99999999988 457789999999999999 999997643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.9e-11 Score=97.24 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=100.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEEcCCCCC--CCCCCcc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGV-QEYVTAREGDVRSL--PFGDNYF 189 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~-~~~v~~~~~d~~~~--~~~~~~f 189 (293)
..+.+|||.|+|-|..++..+++ ++ .|..+|.+++.++.|.-|-=..++ ..+++++.+|..+. .+.+.+|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 45789999999999999888776 44 999999999999988766322222 23478999998764 2678899
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---------CchHHHHHHHHcCCcceEEee
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
|+|+-.||=.... + .---.+++++++|+|+|||.++-+.-. ....+.+.|++.||..+...+
T Consensus 207 DaIiHDPPRfS~A------g---eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 207 DAIIHDPPRFSLA------G---ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred ceEeeCCCccchh------h---hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh
Confidence 9999887732221 1 113468999999999999998753222 235799999999999887765
Q ss_pred eecc
Q 022698 261 RVTA 264 (293)
Q Consensus 261 ~~~~ 264 (293)
.-.+
T Consensus 278 ~~~g 281 (287)
T COG2521 278 EALG 281 (287)
T ss_pred hccc
Confidence 4333
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-10 Score=103.41 Aligned_cols=118 Identities=19% Similarity=0.141 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCCC----CCCCcc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSLP----FGDNYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~----~~~~~f 189 (293)
.+++|||+.|-||.++++.+..- ..+|+.||+|..+++.|++|++.|++. +++.|++.|+.++- -...+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-----A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-----ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-----CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence 37899999999999998887651 239999999999999999999999985 46899999998742 123489
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
|+|+..||-..-..... +...++...++..+.++|+|||.++++++..
T Consensus 292 DlIilDPPsF~r~k~~~---~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 292 DLIILDPPSFARSKKQE---FSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred cEEEECCcccccCcccc---hhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99999988544332111 4445688889999999999999999976654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=93.82 Aligned_cols=108 Identities=23% Similarity=0.253 Sum_probs=74.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEEcCCCCCC----CCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--VQEYVTAREGDVRSLP----FGD 186 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~----~~~ 186 (293)
...+.+|||+|||+|..++.++...+ ..+|+.+|.++ .++.++.|++.|+ ...++.+...|+.+.. ...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~----~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG----AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-----SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-
T ss_pred hcCCceEEEECCccchhHHHHHhccC----CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccccc
Confidence 34678999999999999998887733 46999999998 9999999999887 5567899999986621 234
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.+||+|++..+++.-. ....+++.+.++|+|+|.+++..
T Consensus 118 ~~~D~IlasDv~Y~~~------------~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 118 HSFDVILASDVLYDEE------------LFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SSBSEEEEES--S-GG------------GHHHHHHHHHHHBTT-TTEEEEE
T ss_pred ccCCEEEEecccchHH------------HHHHHHHHHHHHhCCCCEEEEEe
Confidence 6899999998888655 67788899999999999866643
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.5e-10 Score=101.40 Aligned_cols=125 Identities=11% Similarity=0.069 Sum_probs=88.9
Q ss_pred hcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 87 AAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 87 ~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
....|+..+....+.+.+++.+.+. .. +.+|||+|||+|.++..+++.. .+|+++|+|+.|++.+++|+..+
T Consensus 171 ~~~~F~Q~N~~~~~~l~~~v~~~~~-~~-~~~vlDl~~G~G~~sl~la~~~------~~v~~vE~~~~av~~a~~n~~~~ 242 (353)
T TIGR02143 171 VENSFTQPNAAVNIKMLEWACEVTQ-GS-KGDLLELYCGNGNFSLALAQNF------RRVLATEIAKPSVNAAQYNIAAN 242 (353)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhh-cC-CCcEEEEeccccHHHHHHHHhC------CEEEEEECCHHHHHHHHHHHHHc
Confidence 3444555555556667777766653 12 2479999999999999888763 38999999999999999999999
Q ss_pred CCCCceEEEEcCCCCCCCC----------C------CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC
Q 022698 167 GVQEYVTAREGDVRSLPFG----------D------NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG 230 (293)
Q Consensus 167 ~~~~~v~~~~~d~~~~~~~----------~------~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 230 (293)
++. +++|+.+|+.++... . .+||+|+.+||-..+. ..+++.+. +|+
T Consensus 243 ~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~--------------~~~l~~l~---~~~ 304 (353)
T TIGR02143 243 NID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLD--------------PDTCKLVQ---AYE 304 (353)
T ss_pred CCC-cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCc--------------HHHHHHHH---cCC
Confidence 874 599999998763210 1 2389999999843222 24444443 377
Q ss_pred cEEEEEc
Q 022698 231 GVGVVWD 237 (293)
Q Consensus 231 G~l~~~~ 237 (293)
+++|+.+
T Consensus 305 ~ivYvsC 311 (353)
T TIGR02143 305 RILYISC 311 (353)
T ss_pred cEEEEEc
Confidence 8777754
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.9e-10 Score=108.00 Aligned_cols=137 Identities=21% Similarity=0.206 Sum_probs=99.5
Q ss_pred cCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhc---------------------------------
Q 022698 94 SAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKT--------------------------------- 140 (293)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~--------------------------------- 140 (293)
...++.+.++..++....-..++..++|.+||+|++.+..+......
T Consensus 169 ~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~ 248 (702)
T PRK11783 169 GEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA 248 (702)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 44567788888888765422567899999999999999887632100
Q ss_pred -----CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC--CCcccEEEecchhhhhccccCcchhhhH
Q 022698 141 -----GSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG--DNYFDVVVSAAFFHTVGKEYGHRTVEAA 213 (293)
Q Consensus 141 -----~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~Iv~~~~~~~~~~~~~~~~~~~~ 213 (293)
....+++|+|+++.+++.|++|+..+|+.+.+.+.++|+.+++.+ .++||+|++||||..--.+ .
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~--------~ 320 (702)
T PRK11783 249 RAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGE--------E 320 (702)
T ss_pred hhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCc--------h
Confidence 012379999999999999999999999988899999999887533 3579999999999643210 1
Q ss_pred HHHHHHHHHHHHccc---CCcEEEEEcC
Q 022698 214 AERMRVLGEMVRVLK---PGGVGVVWDL 238 (293)
Q Consensus 214 ~~~~~~l~~~~~~Lk---pgG~l~~~~~ 238 (293)
.+...+++.+.+.++ +|+.++++..
T Consensus 321 ~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 321 PALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 244455555554444 8888877653
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=95.18 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=86.9
Q ss_pred chHHHHHHHHHhcCCC-CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 98 LHYDMAQRMVGSVNDW-STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
....+-+.+...+... -.+.++||+.||||.+++..+++-. .+|+.+|.|+.++...++|++..+..+++.++.
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-----~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~ 98 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-----KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIK 98 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT------SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEE
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-----CeEEEEECCHHHHHHHHHHHHHhCCCcceeeec
Confidence 3344455555555433 4578999999999999998877632 599999999999999999999998877899999
Q ss_pred cCCCCCC----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHH--HcccCCcEEEE
Q 022698 177 GDVRSLP----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV--RVLKPGGVGVV 235 (293)
Q Consensus 177 ~d~~~~~----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~ 235 (293)
.|+...- ....+||+|++.|||.... ....++..+. .+|+++|.+++
T Consensus 99 ~d~~~~l~~~~~~~~~fDiIflDPPY~~~~------------~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 99 GDAFKFLLKLAKKGEKFDIIFLDPPYAKGL------------YYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp SSHHHHHHHHHHCTS-EEEEEE--STTSCH------------HHHHHHHHHHHTTSEEEEEEEEE
T ss_pred cCHHHHHHhhcccCCCceEEEECCCcccch------------HHHHHHHHHHHCCCCCCCEEEEE
Confidence 9975421 1357899999999997643 2356666666 78999998888
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-10 Score=96.68 Aligned_cols=104 Identities=21% Similarity=0.294 Sum_probs=86.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-C-C----C
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-F-G----D 186 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-~----~ 186 (293)
.+..+|||||+++|..++.++..++. +++++++|++++..+.|+++++..|+.++++++.+|+.+. + + . .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~---~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPE---DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCC---CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence 45679999999999999999988764 4699999999999999999999999989999999998663 2 1 1 2
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
++||+|+...- ......+++.+.++|+|||.+++
T Consensus 155 ~~fD~iFiDad---------------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 155 GTFDFIFVDAD---------------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CcccEEEecCC---------------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 68999998643 12556788888999999999887
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.5e-10 Score=95.03 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=79.3
Q ss_pred ccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 91 FFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
.++.++-....+.+.+++.+. ..++.+|||+|||+|.++..+++.. ..++++|+++.+++.++++... .+
T Consensus 6 ~~gq~fl~d~~i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~------~~v~~iE~d~~~~~~l~~~~~~---~~ 75 (253)
T TIGR00755 6 SLGQNFLIDESVIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRA------KKVTAIEIDPRLAEILRKLLSL---YE 75 (253)
T ss_pred CCCCccCCCHHHHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhC------CcEEEEECCHHHHHHHHHHhCc---CC
Confidence 455556677788888888774 4567899999999999999998874 3799999999999999887643 25
Q ss_pred ceEEEEcCCCCCCCCCCccc---EEEecchhhhh
Q 022698 171 YVTAREGDVRSLPFGDNYFD---VVVSAAFFHTV 201 (293)
Q Consensus 171 ~v~~~~~d~~~~~~~~~~fD---~Iv~~~~~~~~ 201 (293)
++.++.+|+...+++ ++| +|++|.||+..
T Consensus 76 ~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy~i~ 107 (253)
T TIGR00755 76 RLEVIEGDALKVDLP--DFPKQLKVVSNLPYNIS 107 (253)
T ss_pred cEEEEECchhcCChh--HcCCcceEEEcCChhhH
Confidence 689999999887653 466 99999998753
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.3e-10 Score=98.07 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--C-CCceEEEEcCCCCC-CCCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--V-QEYVTAREGDVRSL-PFGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--~-~~~v~~~~~d~~~~-~~~~~~fD 190 (293)
.+.+||+||||+|..+..+++..+ ..+++++|+++.+++.+++++...+ . .+++++...|..+. ....++||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~----~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKS----VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCC----cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 345999999999999988876542 3589999999999999999875432 1 24688888887652 11246899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+|+++.+....+ .... -..++++.+.+.|+|||.+++.
T Consensus 148 vIi~D~~~~~~~---~~~l-----~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGP---AETL-----FTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCc---ccch-----hHHHHHHHHHHHhCCCcEEEEc
Confidence 999976532211 0000 1357889999999999999885
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.5e-10 Score=91.03 Aligned_cols=130 Identities=26% Similarity=0.327 Sum_probs=91.4
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C--CCCCcccEEEe
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P--FGDNYFDVVVS 194 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~fD~Iv~ 194 (293)
.+||||||.|.++..+|...| ...++|+|++...+..+.+.+...++ +++.++++|+..+ . ++++++|-|..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P----d~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP----DINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST----TSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCC----CCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEE
Confidence 899999999999999999987 56999999999999999999988887 5699999999872 2 45689999999
Q ss_pred cchhhhhccccC-cchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHc--CCcceE
Q 022698 195 AAFFHTVGKEYG-HRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQEL--KMEDIR 257 (293)
Q Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~--gf~~~~ 257 (293)
+.|=-+...... .+. --..+++.++++|+|||.+.+.+... .....+.+.+. +|+.+.
T Consensus 95 ~FPDPWpK~rH~krRl-----~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRL-----VNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ES-----SGGGGGGST-----TSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred eCCCCCcccchhhhhc-----CCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcc
Confidence 866332221000 111 12468999999999999998854322 23455666663 666553
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.4e-10 Score=93.36 Aligned_cols=124 Identities=21% Similarity=0.315 Sum_probs=93.4
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+........|.|+|||.+.++. .. ...|+..|+-+. +-++..+|+.+.|
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~---~~------~~kV~SfDL~a~----------------~~~V~~cDm~~vP 223 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS---SE------RHKVHSFDLVAV----------------NERVIACDMRNVP 223 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh---cc------ccceeeeeeecC----------------CCceeeccccCCc
Confidence 3455555544566789999999998864 11 248999998542 1367889999999
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----CchHHHHHHHHcCCcceEEe
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~l~~~gf~~~~~~ 259 (293)
+++++.|++|++..+-.. +...+++++.|+|++||.+++.+.. ....+.+.+.+.||......
T Consensus 224 l~d~svDvaV~CLSLMgt-------------n~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 224 LEDESVDVAVFCLSLMGT-------------NLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred CccCcccEEEeeHhhhcc-------------cHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 999999999988665433 7889999999999999999996653 34568889999999876554
Q ss_pred eeeccc
Q 022698 260 ERVTAF 265 (293)
Q Consensus 260 ~~~~~~ 265 (293)
.....|
T Consensus 291 ~~n~~F 296 (325)
T KOG3045|consen 291 VSNKYF 296 (325)
T ss_pred hhcceE
Confidence 333333
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-09 Score=95.40 Aligned_cols=142 Identities=19% Similarity=0.199 Sum_probs=102.1
Q ss_pred cccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCC----------------------------
Q 022698 92 FYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSL---------------------------- 143 (293)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~---------------------------- 143 (293)
+....++.+.++..++.... +.++..++|.-||+|++++..+...++.-|+
T Consensus 169 ~~g~ApLketLAaAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~ 247 (381)
T COG0116 169 YDGPAPLKETLAAAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEER 247 (381)
T ss_pred cCCCCCchHHHHHHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHH
Confidence 44455677888888887664 6677899999999999999988765321110
Q ss_pred c-------EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHH
Q 022698 144 G-------RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER 216 (293)
Q Consensus 144 ~-------~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~ 216 (293)
+ .++|+|+++.+++.|+.|+...|+.+.++|.+.|+..+..+...+|+|||||||..-- +.+... ..=.
T Consensus 248 a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRl---g~~~~v-~~LY 323 (381)
T COG0116 248 ARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERL---GSEALV-AKLY 323 (381)
T ss_pred HhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhc---CChhhH-HHHH
Confidence 1 3779999999999999999999999999999999998764336899999999996322 111000 0012
Q ss_pred HHHHHHHHHcccCCcEEEEEcC
Q 022698 217 MRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 217 ~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
..+.+.+.+.++--+..+++..
T Consensus 324 ~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 324 REFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHhcCCceEEEEcc
Confidence 3444555566777777777653
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=97.57 Aligned_cols=110 Identities=23% Similarity=0.219 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc---------CCCCceEEEEcCCCCCC--
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME---------GVQEYVTAREGDVRSLP-- 183 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~---------~~~~~v~~~~~d~~~~~-- 183 (293)
++.+|||+|||-|.-+.-+...- -..++|+|||...++.|+++.+.. ...-...|+.+|.....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-----i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-----IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT------SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcC-----CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 67899999999999877666542 259999999999999999988321 11123677888876421
Q ss_pred --CC--CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 --FG--DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 --~~--~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+. ..+||+|-|-..+|+.= ...+....+++++.+.|+|||.++...
T Consensus 137 ~~~~~~~~~FDvVScQFalHY~F--------ese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFALHYAF--------ESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp CTSSSTTS-EEEEEEES-GGGGG--------SSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhccccCCCcceeehHHHHHHhc--------CCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 22 25899999998888652 234466779999999999999998754
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-10 Score=92.93 Aligned_cols=111 Identities=24% Similarity=0.427 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC-----C------------------
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV-----Q------------------ 169 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~-----~------------------ 169 (293)
+..+..+|||||.+|..+..+++.+.. ..+.|+||++..++.|+++.+...- .
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~----r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~ 131 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGP----RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRN 131 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhcc----ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccc
Confidence 456778999999999999999999873 5899999999999999998653210 0
Q ss_pred -----------CceEEE-------EcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCc
Q 022698 170 -----------EYVTAR-------EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231 (293)
Q Consensus 170 -----------~~v~~~-------~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 231 (293)
+++.|. ..|+.+ .....||+|+|....-|+.-..|. +....++++++++|.|||
T Consensus 132 ~a~~a~t~~~p~n~~f~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNwgD------~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 132 EADRAFTTDFPDNVWFQKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNWGD------DGLRRFFRKISSLLHPGG 203 (288)
T ss_pred cccccccccCCcchhcccccEEEecchhhh--hccccccEEEEEEeeeeEeccccc------HHHHHHHHHHHHhhCcCc
Confidence 011111 111221 234679999998776555433332 256789999999999999
Q ss_pred EEEE
Q 022698 232 VGVV 235 (293)
Q Consensus 232 ~l~~ 235 (293)
+|++
T Consensus 204 iLvv 207 (288)
T KOG2899|consen 204 ILVV 207 (288)
T ss_pred EEEE
Confidence 9998
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.4e-10 Score=92.34 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.+|+|+.||.|.+++.+++..+ ...|+++|++|.+++.+++|++.|++.+++...++|..++.. .+.||.|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~----~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK----AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-----SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC----ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEE
Confidence 45688999999999999999987533 468999999999999999999999999999999999998754 7889999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
+++.|-... .++..+.+++++||++-
T Consensus 174 im~lp~~~~----------------~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPESSL----------------EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TSSGG----------------GGHHHHHHHEEEEEEEE
T ss_pred EECChHHHH----------------HHHHHHHHHhcCCcEEE
Confidence 998775432 46777888999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.3e-09 Score=81.54 Aligned_cols=157 Identities=16% Similarity=0.206 Sum_probs=110.8
Q ss_pred cchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
+.+.-+++.+...+. ...+..|||+|.|+|.++.+++++.-. ...++++|.|++......+... .++++.
T Consensus 31 PsSs~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~---~~~L~~iE~~~dF~~~L~~~~p------~~~ii~ 100 (194)
T COG3963 31 PSSSILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVR---PESLTAIEYSPDFVCHLNQLYP------GVNIIN 100 (194)
T ss_pred CCcHHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCC---ccceEEEEeCHHHHHHHHHhCC------Cccccc
Confidence 455557777777765 466778999999999999999887532 4699999999999887776643 266888
Q ss_pred cCCCCCC-----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHc
Q 022698 177 GDVRSLP-----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQEL 251 (293)
Q Consensus 177 ~d~~~~~-----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~ 251 (293)
+|+.++. ..+..||.|+|.-|+-.++ .....++++.+...|.+||.++...+.+.... +..-
T Consensus 101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P----------~~~~iaile~~~~rl~~gg~lvqftYgp~s~v---~l~r 167 (194)
T COG3963 101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFP----------MHRRIAILESLLYRLPAGGPLVQFTYGPLSPV---LLGR 167 (194)
T ss_pred cchhhHHHHHhhcCCCeeeeEEeccccccCc----------HHHHHHHHHHHHHhcCCCCeEEEEEecCCCcc---cccc
Confidence 8887653 3456799999998877766 23556889999999999999998766543332 1123
Q ss_pred CCcceEEeeeeccceecceeeeeec
Q 022698 252 KMEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 252 gf~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
++-.+....++..+.+...++.+++
T Consensus 168 ~~y~v~~~~~vvRN~PPA~v~~~~~ 192 (194)
T COG3963 168 GDYNVQHFDFVVRNFPPAQVWIYRR 192 (194)
T ss_pred cceeEEEeeEEEecCCceeEEEeec
Confidence 3334444445555444555665554
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=96.86 Aligned_cols=110 Identities=17% Similarity=0.179 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEEcCCCCCC--CCCCc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--GV-QEYVTAREGDVRSLP--FGDNY 188 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--~~-~~~v~~~~~d~~~~~--~~~~~ 188 (293)
.++++||+||||.|..+..+++. +. ..+++.+|+++.+++.+++.+... +. .++++++.+|+...- .++++
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~---v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SS---VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGT 165 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CC---CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCC
Confidence 45679999999999999988865 21 358999999999999999987542 12 358999999976531 22568
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
||+|++..+-...+ ...--..++++.+.+.|+|||+++.
T Consensus 166 yDvIi~D~~dp~~~--------~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 166 YDAIIVDSSDPVGP--------AQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred CCEEEEcCCCCCCc--------hhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99999864322111 0001235789999999999999976
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.4e-10 Score=96.69 Aligned_cols=136 Identities=20% Similarity=0.235 Sum_probs=93.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCCC---CCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSLP---FGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~---~~~~~fD 190 (293)
.+++|||+.|-+|.++++.+..- ..+|+.+|.|..+++.+++|+..|++. ++++|++.|+.+.- -..++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-----A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-----AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-----ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-----CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCC
Confidence 46799999999999998776541 248999999999999999999999976 57999999997631 1246899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC---chHHHHHHHHcCCcceEEeeee
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH---VPEYVRRLQELKMEDIRVSERV 262 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~l~~~gf~~~~~~~~~ 262 (293)
+||+.||-..- +. +....+...++..+.++|+|||.|+++.+.+ .+...+.+.+.+ ..++..+.+
T Consensus 198 ~IIlDPPsF~k----~~--~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a-~~~~~~~~~ 265 (286)
T PF10672_consen 198 LIILDPPSFAK----SK--FDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAA-REVEFIERL 265 (286)
T ss_dssp EEEE--SSEES----ST--CEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHH-HHCEEEEEE
T ss_pred EEEECCCCCCC----CH--HHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhC-ccceEeeee
Confidence 99999885421 11 2224577889999999999999998865543 344566665554 344444433
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-09 Score=98.88 Aligned_cols=125 Identities=20% Similarity=0.182 Sum_probs=93.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CCCCcccE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FGDNYFDV 191 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~ 191 (293)
..++.+|||+|||.|.-+.+++..+... ..+++.|+++..+..+++|+++.|+. ++.+...|...+. ...+.||.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~---g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~ 186 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQ---GAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDA 186 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCC---CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCe
Confidence 4678899999999999999999988643 48999999999999999999999984 5888888887653 22357999
Q ss_pred EEecchhhhhc---cccCc-------chhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc
Q 022698 192 VVSAAFFHTVG---KEYGH-------RTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV 241 (293)
Q Consensus 192 Iv~~~~~~~~~---~~~~~-------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 241 (293)
|++..|..... ..+.. ....-..-..+++..+.++|||||+|+.+.+...
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 99887754222 11100 0000111235689999999999999998877643
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=95.48 Aligned_cols=107 Identities=25% Similarity=0.241 Sum_probs=81.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
+..++.|||+|||+|.++...++.. ..+|+|+|.|.-+ +.|.+.+..|+..+.++++.+.+.+..+|..+.|+|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG-----A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiI 131 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG-----ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDII 131 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC-----cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEE
Confidence 4568899999999999999888774 3599999998765 999999999999889999999999876667899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
+|-..-+.+-.+.. ...++-.=-+.|+|||.++
T Consensus 132 vSEWMGy~Ll~EsM---------ldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 132 VSEWMGYFLLYESM---------LDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred eehhhhHHHHHhhh---------hhhhhhhhhhccCCCceEc
Confidence 99654433321110 1122222237899999987
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-10 Score=93.41 Aligned_cols=142 Identities=20% Similarity=0.252 Sum_probs=106.1
Q ss_pred chHHHHHHHHHhcCCC-CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 98 LHYDMAQRMVGSVNDW-STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
+.+++...+.+.+-+. +....++|||||-|.+..++..+. -.+++.+|.|..|++.++.. +.+++ .+....
T Consensus 54 lkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~-----vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v 125 (325)
T KOG2940|consen 54 LKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEG-----VEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFV 125 (325)
T ss_pred HHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcc-----hhheeeeecchHHHHHhhcc-CCCce--EEEEEe
Confidence 3444444555444322 234579999999999998887663 24899999999999988754 33443 267778
Q ss_pred cCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc-------------------
Q 022698 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD------------------- 237 (293)
Q Consensus 177 ~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~------------------- 237 (293)
.|-+.+++.++++|+|+++..+||.. +....+.+++..|||+|.++-.-
T Consensus 126 ~DEE~Ldf~ens~DLiisSlslHW~N------------dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelE 193 (325)
T KOG2940|consen 126 GDEEFLDFKENSVDLIISSLSLHWTN------------DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELE 193 (325)
T ss_pred cchhcccccccchhhhhhhhhhhhhc------------cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHH
Confidence 89888889899999999999999998 77888999999999999987410
Q ss_pred -----------CCCchHHHHHHHHcCCcceEEe
Q 022698 238 -----------LLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 238 -----------~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
+.+..+.-.+|..+||....+.
T Consensus 194 R~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 194 REGGISPHISPFTQVRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred hccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence 1123467778888888876654
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=98.98 Aligned_cols=108 Identities=24% Similarity=0.324 Sum_probs=78.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
+..|+|+|||+|-+....++.....+...+|+|+|-|+.+...+++..+.+++.++|+++.+|+++...+ .++|+|||=
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5689999999999998877765444445699999999999988888878889989999999999997654 489999984
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
..=.....| -..+.+....+.|||||+++
T Consensus 266 lLGsfg~nE----------l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNE----------LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTT----------SHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccc----------cCHHHHHHHHhhcCCCCEEe
Confidence 321111100 12345777789999999876
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=91.44 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCCCC--CCCeEEEEcCCCChHHHHHHHHhhhcC-----CCcEEEEEeCCHHHHHHHHHHH-------H-
Q 022698 100 YDMAQRMVGSVNDWS--TVKTALDIGCGRGILLNAVATQFKKTG-----SLGRVVGLDCKKRTTLSTLRTA-------K- 164 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~~~-----~~~~v~~vDis~~~l~~a~~~~-------~- 164 (293)
+.+.+.++..+.... ..-+|+-+||+||.-+..+|-.+.+.. ...+|+|+|||..+++.|+.-. +
T Consensus 79 ~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~ 158 (268)
T COG1352 79 EELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG 158 (268)
T ss_pred HHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhcc
Confidence 445555555443212 367999999999987777766554432 2579999999999999887521 0
Q ss_pred -----------h---------cCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHH
Q 022698 165 -----------M---------EGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV 224 (293)
Q Consensus 165 -----------~---------~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (293)
. ..+...|.|...|+...++..+.||+|+|-+++..+. .+...++++.++
T Consensus 159 ~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd----------~~~q~~il~~f~ 228 (268)
T COG1352 159 LPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFD----------EETQERILRRFA 228 (268)
T ss_pred CCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeC----------HHHHHHHHHHHH
Confidence 0 0112457788888876543457799999999999887 447788999999
Q ss_pred HcccCCcEEEEE
Q 022698 225 RVLKPGGVGVVW 236 (293)
Q Consensus 225 ~~LkpgG~l~~~ 236 (293)
..|+|||.|++-
T Consensus 229 ~~L~~gG~LflG 240 (268)
T COG1352 229 DSLKPGGLLFLG 240 (268)
T ss_pred HHhCCCCEEEEc
Confidence 999999999994
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.2e-10 Score=90.44 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=110.5
Q ss_pred cCchhhhHHhhhccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcc
Q 022698 10 TTREWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAG 89 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~ 89 (293)
+-+--+|++...+.+.+..+++.+.+.+..++++.++... .++.+... |.+.
T Consensus 40 ~pD~~Tq~fL~ns~~~s~n~f~ql~h~l~~sils~fms~T--dING~lgr--------------GsMF------------ 91 (288)
T KOG3987|consen 40 EPDATTQSFLENSKALSANIFTQLWHALARSILSFFMSQT--DINGFLGR--------------GSMF------------ 91 (288)
T ss_pred CCCccHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--cccccccc--------------CceE------------
Confidence 3344567777888888888899999998888777655543 22222221 2211
Q ss_pred cccccCccchHHHHHHHHHhcCC-C-CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC
Q 022698 90 NFFYSAVPLHYDMAQRMVGSVND-W-STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG 167 (293)
Q Consensus 90 ~f~~~~~~~~~~~~~~l~~~~~~-~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~ 167 (293)
..+++..+.++..-.+ + ..+.++||+|+|.|.++..++..+. +|++++.|..|..+.++. +
T Consensus 92 -------ifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe------evyATElS~tMr~rL~kk----~ 154 (288)
T KOG3987|consen 92 -------IFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE------EVYATELSWTMRDRLKKK----N 154 (288)
T ss_pred -------EecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH------HHHHHHhhHHHHHHHhhc----C
Confidence 2344444555543322 2 3457899999999999999988765 799999999987766543 2
Q ss_pred CCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccC-CcEEEE
Q 022698 168 VQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKP-GGVGVV 235 (293)
Q Consensus 168 ~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~ 235 (293)
.. | .-..++. ..+-+||+|.|.+.+.... ++..+++.++.+|+| +|++++
T Consensus 155 yn--V-l~~~ew~---~t~~k~dli~clNlLDRc~------------~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 155 YN--V-LTEIEWL---QTDVKLDLILCLNLLDRCF------------DPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred Cc--e-eeehhhh---hcCceeehHHHHHHHHhhc------------ChHHHHHHHHHHhccCCCcEEE
Confidence 11 1 1112222 2345799999999988776 888999999999999 898776
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=85.90 Aligned_cols=138 Identities=19% Similarity=0.222 Sum_probs=109.5
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.++..+ +..|+.+|+|-|+|+|.++.++++..... .+++..|+.+...+.|.+.++..++.+++.+...|+....+
T Consensus 96 ~I~~~L-~i~PGsvV~EsGTGSGSlShaiaraV~pt---Ghl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 96 MILSML-EIRPGSVVLESGTGSGSLSHAIARAVAPT---GHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHh-cCCCCCEEEecCCCcchHHHHHHHhhCcC---cceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 344444 47899999999999999999999987653 59999999999999999999999999999999999987554
Q ss_pred C--CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCc-EEEEEcC--CCchHHHHHHHHcCCcceEEe
Q 022698 185 G--DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG-VGVVWDL--LHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 185 ~--~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~--~~~~~~~~~l~~~gf~~~~~~ 259 (293)
. +..+|.|+...| .|-..+..++.+||.+| +++-... -+.+...+.|++.||..++..
T Consensus 172 ~~ks~~aDaVFLDlP-----------------aPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLP-----------------APWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred cccccccceEEEcCC-----------------ChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEE
Confidence 3 578999998644 55566677777899877 4443221 134467888999999999998
Q ss_pred eeec
Q 022698 260 ERVT 263 (293)
Q Consensus 260 ~~~~ 263 (293)
+.+.
T Consensus 235 Ev~~ 238 (314)
T KOG2915|consen 235 EVLL 238 (314)
T ss_pred Eeeh
Confidence 8766
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-09 Score=95.42 Aligned_cols=107 Identities=20% Similarity=0.313 Sum_probs=72.3
Q ss_pred hcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 87 AAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 87 ~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
....|+..+....+.+.+.+++.+.. .++ +|||+.||.|.+++.++... .+|+|+|+++.+++.|++|++.+
T Consensus 170 ~~~sFfQvN~~~~~~l~~~~~~~l~~-~~~-~vlDlycG~G~fsl~la~~~------~~V~gvE~~~~av~~A~~Na~~N 241 (352)
T PF05958_consen 170 SPGSFFQVNPEQNEKLYEQALEWLDL-SKG-DVLDLYCGVGTFSLPLAKKA------KKVIGVEIVEEAVEDARENAKLN 241 (352)
T ss_dssp ETTS---SBHHHHHHHHHHHHHHCTT--TT-EEEEES-TTTCCHHHHHCCS------SEEEEEES-HHHHHHHHHHHHHT
T ss_pred CCCcCccCcHHHHHHHHHHHHHHhhc-CCC-cEEEEeecCCHHHHHHHhhC------CeEEEeeCCHHHHHHHHHHHHHc
Confidence 34556666666667788888887753 333 89999999999999998764 49999999999999999999999
Q ss_pred CCCCceEEEEcCCCCCC----------------CCCCcccEEEecchhhhhc
Q 022698 167 GVQEYVTAREGDVRSLP----------------FGDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 167 ~~~~~v~~~~~d~~~~~----------------~~~~~fD~Iv~~~~~~~~~ 202 (293)
++ ++++|...++.++. .....+|+|+..||=..+.
T Consensus 242 ~i-~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 242 GI-DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp T---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred CC-CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 98 46999988765431 1123689999988755443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.7e-09 Score=83.07 Aligned_cols=123 Identities=19% Similarity=0.141 Sum_probs=92.4
Q ss_pred cchHHHHHHHHHhcCC-CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q 022698 97 PLHYDMAQRMVGSVND-WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~ 175 (293)
|....+-+.+...+.+ .-.+.++||+-+|||.+++..+++.. .+++.+|.+..++...++|.+..+...++.++
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-----~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~ 98 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-----ARVVFVEKDRKAVKILKENLKALGLEGEARVL 98 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-----ceEEEEecCHHHHHHHHHHHHHhCCccceEEE
Confidence 3444555666666665 35678999999999999998887743 59999999999999999999999877889999
Q ss_pred EcCCCCC-C-CC-CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHH--HHHcccCCcEEEE
Q 022698 176 EGDVRSL-P-FG-DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGE--MVRVLKPGGVGVV 235 (293)
Q Consensus 176 ~~d~~~~-~-~~-~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~~ 235 (293)
..|+... + .. .++||+|+..|||+.-- -+....+.. -..+|+|+|.+++
T Consensus 99 ~~da~~~L~~~~~~~~FDlVflDPPy~~~l-----------~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 99 RNDALRALKQLGTREPFDLVFLDPPYAKGL-----------LDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred eecHHHHHHhcCCCCcccEEEeCCCCccch-----------hhHHHHHHHHHhcCCcCCCcEEEE
Confidence 9998743 1 11 23599999999998321 022233333 3467999999988
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-08 Score=90.58 Aligned_cols=152 Identities=25% Similarity=0.232 Sum_probs=105.7
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
...+...+....++.+|||++++.|.-|.++++...+. +..|+++|+|+.-+...+.|+++.|+.+ +.....|...+
T Consensus 144 sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~--~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~ 220 (355)
T COG0144 144 ASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENE--GAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRL 220 (355)
T ss_pred HHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCC--CceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccc
Confidence 33444455556788999999999999999999998753 2467999999999999999999999865 78888887654
Q ss_pred C---CCCCcccEEEecchhhhhcc---ccC---cchhh----hHHHHHHHHHHHHHcccCCcEEEEEcCCCc----hHHH
Q 022698 183 P---FGDNYFDVVVSAAFFHTVGK---EYG---HRTVE----AAAERMRVLGEMVRVLKPGGVGVVWDLLHV----PEYV 245 (293)
Q Consensus 183 ~---~~~~~fD~Iv~~~~~~~~~~---~~~---~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~ 245 (293)
+ ...++||.|++..|...... .|. ..... -..-..+++..+.+.|||||.|+++++... +++.
T Consensus 221 ~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV 300 (355)
T COG0144 221 AELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVV 300 (355)
T ss_pred cccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHH
Confidence 3 12236999999877543221 111 11111 112234689999999999999999777643 3444
Q ss_pred H-HHHHc-CCcceE
Q 022698 246 R-RLQEL-KMEDIR 257 (293)
Q Consensus 246 ~-~l~~~-gf~~~~ 257 (293)
+ .+++. +|+...
T Consensus 301 ~~~L~~~~~~~~~~ 314 (355)
T COG0144 301 ERFLERHPDFELEP 314 (355)
T ss_pred HHHHHhCCCceeec
Confidence 4 44443 444433
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-09 Score=83.22 Aligned_cols=96 Identities=26% Similarity=0.298 Sum_probs=73.7
Q ss_pred chHHHHHHHHHhcCC---CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 98 LHYDMAQRMVGSVND---WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
..++++..++..+.. --.+++++|+|||.|-+....+.. . ...++|+||.|++++.+.+|+....++ +.+
T Consensus 28 T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~-~----~e~vlGfDIdpeALEIf~rNaeEfEvq--idl 100 (185)
T KOG3420|consen 28 TRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP-K----NESVLGFDIDPEALEIFTRNAEEFEVQ--IDL 100 (185)
T ss_pred CcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC-C----CceEEeeecCHHHHHHHhhchHHhhhh--hhe
Confidence 334455555444321 135678999999999988444322 2 358999999999999999999998876 799
Q ss_pred EEcCCCCCCCCCCcccEEEecchhhh
Q 022698 175 REGDVRSLPFGDNYFDVVVSAAFFHT 200 (293)
Q Consensus 175 ~~~d~~~~~~~~~~fD~Iv~~~~~~~ 200 (293)
+++|+.++.+..+.||.++.|||+.-
T Consensus 101 Lqcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 101 LQCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred eeeeccchhccCCeEeeEEecCCCCc
Confidence 99999997766789999999999854
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.8e-09 Score=87.46 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=87.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---CCCCcccEEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---FGDNYFDVVV 193 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~Iv 193 (293)
..+||||||.|.+...+|+..| ...++|+|+....+..+.+.+...++. ++.+++.|+..+- .++++.|-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP----~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP----EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC----CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 4799999999999999999988 468999999999999999999999884 6999999987632 3456999999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.+.|=-|.. ..+.+- .--...+++.+.+.|+|||.+.+.+
T Consensus 125 i~FPDPWpK-kRH~KR---Rl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPK-KRHHKR---RLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred EECCCCCCC-cccccc---ccCCHHHHHHHHHHccCCCEEEEEe
Confidence 986633322 111000 0012468999999999999999844
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-08 Score=88.85 Aligned_cols=150 Identities=18% Similarity=0.201 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhh---cCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEEc
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKK---TGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY-VTAREG 177 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~---~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~-v~~~~~ 177 (293)
+++.+++.+. ..++.+|+|.+||+|.+...+...+.. .....+++|+|+++.++..++-|+...+.... ..+...
T Consensus 34 i~~l~~~~~~-~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 34 IVDLMVKLLN-PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHT-T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHhhhh-ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 4455555553 456678999999999999988876410 01146999999999999999988766654332 457888
Q ss_pred CCCCCCCC--CCcccEEEecchhhhh--cccc-----Ccc--hhhhHHHHHHHHHHHHHcccCCcEEEEEcC------C-
Q 022698 178 DVRSLPFG--DNYFDVVVSAAFFHTV--GKEY-----GHR--TVEAAAERMRVLGEMVRVLKPGGVGVVWDL------L- 239 (293)
Q Consensus 178 d~~~~~~~--~~~fD~Iv~~~~~~~~--~~~~-----~~~--~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------~- 239 (293)
|....+.. ..+||+|++|||+... .... ... ..........++..+.+.|++||++.++-. .
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~ 192 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSS 192 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGST
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccc
Confidence 87654422 4689999999999765 1100 000 000011223588889999999998766321 1
Q ss_pred CchHHHHHHHHcC
Q 022698 240 HVPEYVRRLQELK 252 (293)
Q Consensus 240 ~~~~~~~~l~~~g 252 (293)
....+++.|.+.+
T Consensus 193 ~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 193 SEKKIRKYLLENG 205 (311)
T ss_dssp HHHHHHHHHHHHE
T ss_pred hHHHHHHHHHhhc
Confidence 1235666666554
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-08 Score=87.93 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=91.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|+|+-+|-|.+++.+++.-. .+|+++|+||.+++.+++|++.|++.+++..+++|....+...+.+|.|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-----~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-----PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-----ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEE
Confidence 3578999999999999999987732 35999999999999999999999998889999999998764447899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchH
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPE 243 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 243 (293)
.+.|. ....++..+.+.+++||++-+++..+..+
T Consensus 262 m~~p~----------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 262 MGLPK----------------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred eCCCC----------------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 98764 33467777888999999998877655443
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-08 Score=85.68 Aligned_cols=124 Identities=23% Similarity=0.303 Sum_probs=89.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-----ceEEEEcCCCC------C
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE-----YVTAREGDVRS------L 182 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~-----~v~~~~~d~~~------~ 182 (293)
.+...++|+|||-|.-++-+-+.. -..++|+||++..+++|+++.+...-.. .+.|+.+|-.. +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-----I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-----IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-----ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc
Confidence 456679999999999887665442 2489999999999999998876432111 26888888754 2
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHc
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQEL 251 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~ 251 (293)
++.+.+||+|-|-.++|.. ++..+....+++++.++|+|||.++- +......+...|++.
T Consensus 191 e~~dp~fDivScQF~~HYa--------Fetee~ar~~l~Nva~~LkpGG~FIg-TiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYA--------FETEESARIALRNVAKCLKPGGVFIG-TIPDSDVIIKRLRAG 250 (389)
T ss_pred cCCCCCcceeeeeeeEeee--------eccHHHHHHHHHHHHhhcCCCcEEEE-ecCcHHHHHHHHHhc
Confidence 2345569999998887754 22344677899999999999999876 334455666666655
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-08 Score=85.19 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=81.2
Q ss_pred cccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc
Q 022698 92 FYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY 171 (293)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~ 171 (293)
++.++-......+.+++... ..++.+|||||+|.|.+|..|++. +.+|+++|+++.+++..++.... .++
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~~---~~n 77 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLER------AARVTAIEIDRRLAEVLKERFAP---YDN 77 (259)
T ss_pred cccccccCHHHHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhh------cCeEEEEEeCHHHHHHHHHhccc---ccc
Confidence 44455556667788887775 455789999999999999999987 35899999999999988888652 356
Q ss_pred eEEEEcCCCCCCCCCC-cccEEEecchhhhhc
Q 022698 172 VTAREGDVRSLPFGDN-YFDVVVSAAFFHTVG 202 (293)
Q Consensus 172 v~~~~~d~~~~~~~~~-~fD~Iv~~~~~~~~~ 202 (293)
++++.+|+...+++.- .++.||+|.||+-..
T Consensus 78 ~~vi~~DaLk~d~~~l~~~~~vVaNlPY~Iss 109 (259)
T COG0030 78 LTVINGDALKFDFPSLAQPYKVVANLPYNISS 109 (259)
T ss_pred eEEEeCchhcCcchhhcCCCEEEEcCCCcccH
Confidence 9999999998776532 689999999998654
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-08 Score=90.07 Aligned_cols=111 Identities=20% Similarity=0.182 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC---CCCceEEEEcCCCCC-CCCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG---VQEYVTAREGDVRSL-PFGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD 190 (293)
.+.+||.||+|.|..+..+++..+ ..+++++|+++.+++.+++.+..++ -.++++++..|.... ....++||
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~----~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yD 178 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT----VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFD 178 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC----CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCcc
Confidence 456899999999999988887533 3589999999999999999876432 246899999998774 22356899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHH-HHHHcccCCcEEEE
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLG-EMVRVLKPGGVGVV 235 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~ 235 (293)
+|++..+ .... .+.. ..--..++++ .+.+.|+|||++++
T Consensus 179 vIi~D~~-dp~~--~~~~---~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 179 VIIGDLA-DPVE--GGPC---YQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred EEEecCC-Cccc--cCcc---hhhccHHHHHHHHHHhcCCCcEEEE
Confidence 9998732 1100 0000 0001246887 88999999999876
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=84.43 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
++.....+++... ..++..|||+|.|||..+..++.. +.+|+|+|+++.|+...+++.+....+++.+++.+|
T Consensus 43 Np~v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~------~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD 115 (315)
T KOG0820|consen 43 NPLVIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEA------GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGD 115 (315)
T ss_pred CHHHHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHh------cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecc
Confidence 3556666776653 678889999999999999999877 569999999999999999998877666889999999
Q ss_pred CCCCCCCCCcccEEEecchhhhhc
Q 022698 179 VRSLPFGDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 179 ~~~~~~~~~~fD~Iv~~~~~~~~~ 202 (293)
+...++ ..||.+|+|.||....
T Consensus 116 ~lK~d~--P~fd~cVsNlPyqISS 137 (315)
T KOG0820|consen 116 FLKTDL--PRFDGCVSNLPYQISS 137 (315)
T ss_pred cccCCC--cccceeeccCCccccC
Confidence 988654 4599999998886543
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.7e-09 Score=83.06 Aligned_cols=76 Identities=29% Similarity=0.345 Sum_probs=57.6
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCc-ccEEEe
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNY-FDVVVS 194 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~-fD~Iv~ 194 (293)
.|+|+.||.|..++.+++.+. +|+++|+++..++.++.|++..|+.+++.++++|+.+.. ..... +|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~------~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD------RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCC------eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 699999999999999998854 899999999999999999999999899999999998753 11122 899999
Q ss_pred cchhh
Q 022698 195 AAFFH 199 (293)
Q Consensus 195 ~~~~~ 199 (293)
+||..
T Consensus 76 SPPWG 80 (163)
T PF09445_consen 76 SPPWG 80 (163)
T ss_dssp ---BS
T ss_pred CCCCC
Confidence 99964
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.8e-08 Score=93.83 Aligned_cols=87 Identities=15% Similarity=0.097 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcC----CCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTG----SLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG 185 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~----~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 185 (293)
...+|||.|||+|.+...++..++... ....++|+|+++.++..++.++...+. ....+...|..... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 345899999999999999998876321 125899999999999999999876651 12444545533211 11
Q ss_pred CCcccEEEecchhhhhc
Q 022698 186 DNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~ 202 (293)
.++||+|++||||....
T Consensus 110 ~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 110 LDLFDIVITNPPYGRLK 126 (524)
T ss_pred cCcccEEEeCCCccccC
Confidence 25799999999997654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-08 Score=87.45 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=89.6
Q ss_pred HHHHHHHHhcCCCC----CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCceEEE
Q 022698 101 DMAQRMVGSVNDWS----TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-GVQEYVTAR 175 (293)
Q Consensus 101 ~~~~~l~~~~~~~~----~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-~~~~~v~~~ 175 (293)
....++.+.+.... ..-++||||||..++=-.|..... +++++|+||++.+++.|++|.+.| ++.++|+++
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~----~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~ 159 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY----GWSFVATDIDPKSLESARENVERNPNLESRIELR 159 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEE
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc----CCeEEEecCCHHHHHHHHHHHHhccccccceEEE
Confidence 34455555554322 245799999999988544544433 589999999999999999999999 898999998
Q ss_pred EcCCCCC-----CCCCCcccEEEecchhhhhccccCcchhhh---------------------------HHHHHHHHHHH
Q 022698 176 EGDVRSL-----PFGDNYFDVVVSAAFFHTVGKEYGHRTVEA---------------------------AAERMRVLGEM 223 (293)
Q Consensus 176 ~~d~~~~-----~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~l~~~ 223 (293)
...-... ......||+.+||||++....+........ ...-..|++++
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rM 239 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRM 239 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE-----SS--------------------------------TTTTHHHHTHHHHHHHH
T ss_pred EcCCccccchhhhcccceeeEEecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHH
Confidence 7643221 122458999999999987664321100000 00011244444
Q ss_pred HH---cccCCcEEEEEcC----CCchHHHHHHHHcCCcceEEeeeeccceecceeeee
Q 022698 224 VR---VLKPGGVGVVWDL----LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSF 274 (293)
Q Consensus 224 ~~---~LkpgG~l~~~~~----~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~ 274 (293)
.+ .++. -+.++... ...+.+...|++.|-..+.+.+...|.. .++++.+
T Consensus 240 I~ES~~~~~-~v~WfTsmvgKkssL~~l~~~L~~~~~~~~~~~e~~QG~t-~rw~lAW 295 (299)
T PF05971_consen 240 IKESLQLKD-QVRWFTSMVGKKSSLKPLKKELKKLGATNYKVTEMCQGQT-KRWILAW 295 (299)
T ss_dssp HHHHHHHGG-GEEEEEEEESSGGGHHHHHHHHHHTT-SEEEEEEEEETTE-EEEEEEE
T ss_pred HHHHHHhCC-CcEEEeecccCcccHHHHHHHHHhcCCceEEEEEccCCce-EEEEEEE
Confidence 31 1222 23333222 2456788999999999999998888864 3444443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-08 Score=91.45 Aligned_cols=127 Identities=13% Similarity=0.159 Sum_probs=93.8
Q ss_pred cccccCccchHHHHHHHHHhcCCCCC---CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 90 NFFYSAVPLHYDMAQRMVGSVNDWST---VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 90 ~f~~~~~~~~~~~~~~l~~~~~~~~~---~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
-||......+.++.-.++........ ..+|||+.||+|..++.++.+.+. ..+|+++|+|+.+++.+++|++.+
T Consensus 16 vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~g---a~~Vv~nD~n~~Av~~i~~N~~~N 92 (374)
T TIGR00308 16 VFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEG---VREVFANDINPKAVESIKNNVEYN 92 (374)
T ss_pred cccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCC---CCEEEEEeCCHHHHHHHHHHHHHh
Confidence 35555555666655544443322122 258999999999999999887431 258999999999999999999998
Q ss_pred CCCCceEEEEcCCCCCCC-CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 167 GVQEYVTAREGDVRSLPF-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 167 ~~~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+.. ++++.+.|+..+-. ...+||+|...| +. .+..++..+.+.+++||.+++.
T Consensus 93 ~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG---------------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 93 SVE-NIEVPNEDAANVLRYRNRKFHVIDIDP-FG---------------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-CC---------------CcHHHHHHHHHhcccCCEEEEE
Confidence 864 58899999876421 135799999987 42 2346888899999999999985
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.2e-08 Score=84.02 Aligned_cols=100 Identities=21% Similarity=0.308 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.....+|+|.|.|..+..+..++| ++-+++.....+..+..+.. .| |+.+.+|+..- .|. -|+|+.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp------~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~--~daI~m 242 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYP------HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPK--GDAIWM 242 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCC------CCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCC--cCeEEE
Confidence 356899999999999999998776 68888888887776666654 44 67888888774 333 479999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
-..+|++. +++...+|++++..|+|||.+++++.
T Consensus 243 kWiLhdwt----------DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 243 KWILHDWT----------DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred EeecccCC----------hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 99999998 55899999999999999999999664
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-07 Score=77.39 Aligned_cols=143 Identities=14% Similarity=0.108 Sum_probs=98.4
Q ss_pred hHHHHHHHHHhcCCCC---CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q 022698 99 HYDMAQRMVGSVNDWS---TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~---~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~ 175 (293)
..-+++|+.+...... ...++|||||=+......-.. -..|+.+|+++. . -.+.
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~-------~fdvt~IDLns~----------~------~~I~ 88 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG-------WFDVTRIDLNSQ----------H------PGIL 88 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccccC-------ceeeEEeecCCC----------C------CCce
Confidence 3446666665544322 236899999986654332211 247999999874 1 2467
Q ss_pred EcCCCCCCC---CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcE-----EEEEcC---------
Q 022698 176 EGDVRSLPF---GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV-----GVVWDL--------- 238 (293)
Q Consensus 176 ~~d~~~~~~---~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~-----l~~~~~--------- 238 (293)
++|+.+.|. ++++||+|+++.++..+| +....-+.++++++.|+|+|. |+++-+
T Consensus 89 qqDFm~rplp~~~~e~FdvIs~SLVLNfVP---------~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy 159 (219)
T PF11968_consen 89 QQDFMERPLPKNESEKFDVISLSLVLNFVP---------DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRY 159 (219)
T ss_pred eeccccCCCCCCcccceeEEEEEEEEeeCC---------CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccc
Confidence 888888765 367899999999999988 233556799999999999999 777533
Q ss_pred CCchHHHHHHHHcCCcceEEeeeeccceecceeeeeecCC
Q 022698 239 LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPS 278 (293)
Q Consensus 239 ~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (293)
...+.+.++|...||..++.++ .... .++.+++..
T Consensus 160 ~~~~~l~~im~~LGf~~~~~~~--~~Kl---~y~l~r~~~ 194 (219)
T PF11968_consen 160 MTEERLREIMESLGFTRVKYKK--SKKL---AYWLFRKSG 194 (219)
T ss_pred cCHHHHHHHHHhCCcEEEEEEe--cCeE---EEEEEeecC
Confidence 2345788999999999887643 2322 455555543
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.5e-08 Score=80.42 Aligned_cols=105 Identities=27% Similarity=0.283 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-----CCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-----FGDN 187 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~ 187 (293)
..+++.||||.=+|.-++.++..+|+. .+|+++|++++..+.+.+..+..|+..++.+++++..+. + .+.+
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~d---Grv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPED---GRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCC---ceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCC
Confidence 346799999999999999999999974 599999999999999999999999999999999998652 1 2457
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
.||.++...- .++....+.++.+++|+||++++-
T Consensus 149 tfDfaFvDad---------------K~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 149 TFDFAFVDAD---------------KDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ceeEEEEccc---------------hHHHHHHHHHHHhhcccccEEEEe
Confidence 8999997521 225568899999999999999983
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=82.28 Aligned_cols=123 Identities=17% Similarity=0.207 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.++.|||+|||+|.++...+..- ..+|++++-| +|.+.|++..+.|.+.+++.++.+-+++..++ ++.|+|++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-----A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-----AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-----cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEe
Confidence 56789999999999987777653 3599999986 57889999999999999999999999987664 57999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE-E------cCCCchHHHHHHHHcCCc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV-W------DLLHVPEYVRRLQELKME 254 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~-~------~~~~~~~~~~~l~~~gf~ 254 (293)
-|.-..+- .+...+.+-.+++.|+|.|.++- + .+....-+.+.+.++.|-
T Consensus 250 EPMG~mL~----------NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFW 306 (517)
T KOG1500|consen 250 EPMGYMLV----------NERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFW 306 (517)
T ss_pred ccchhhhh----------hHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhh
Confidence 76644433 11334455556799999998763 1 111222366666666543
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-07 Score=80.45 Aligned_cols=111 Identities=11% Similarity=0.096 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCce--EEEEcCCCCC----CC--C
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYV--TAREGDVRSL----PF--G 185 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v--~~~~~d~~~~----~~--~ 185 (293)
.++..++|+|||+|.-+..|+..+...+....++++|+|.++++.+.+++..... +.+ .-+++|..+. +. .
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhcccccc
Confidence 4556899999999999999999887544457899999999999999999873322 224 4477877552 11 1
Q ss_pred CCcccEEEec-chhhhhccccCcchhhhHHHHHHHHHHHHH-cccCCcEEEE
Q 022698 186 DNYFDVVVSA-AFFHTVGKEYGHRTVEAAAERMRVLGEMVR-VLKPGGVGVV 235 (293)
Q Consensus 186 ~~~fD~Iv~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~~ 235 (293)
.....+++.. ..+..++ +.+...+++++++ .|+|||.|++
T Consensus 154 ~~~~r~~~flGSsiGNf~----------~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFS----------RPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred cCCccEEEEeCccccCCC----------HHHHHHHHHHHHHhhCCCCCEEEE
Confidence 2235566653 3555555 3467789999999 9999999887
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-07 Score=75.54 Aligned_cols=99 Identities=23% Similarity=0.224 Sum_probs=81.0
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecch
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAF 197 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~ 197 (293)
+++|||+|.|--++.++-..| ..+++.+|.+..-+...+......++. ++++++..+++ +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p----~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP----DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T----TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCC----CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cccCCCccEEEeehh
Confidence 899999999999999998888 469999999999999999999999984 69999999988 444678999999754
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
- ....+++-+...+++||.+++.--
T Consensus 125 ~----------------~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 125 A----------------PLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp S----------------SHHHHHHHHGGGEEEEEEEEEEES
T ss_pred c----------------CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3 344677888899999999888653
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-08 Score=85.14 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=82.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--C-CCceEEEEcCCCCCC-CCCCcccEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--V-QEYVTAREGDVRSLP-FGDNYFDVV 192 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--~-~~~v~~~~~d~~~~~-~~~~~fD~I 192 (293)
++||-||.|.|..+..++++.+ -.+++.+||++..++.+++.+.... . .+|++++..|..++- ....+||+|
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~----ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP----VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC----cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 6999999999999999998865 3599999999999999999876542 2 378999999987742 123479999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
++...=. .. ++... --.++++.+++.|+++|+++.-
T Consensus 154 i~D~tdp-~g--p~~~L-----ft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 154 IVDSTDP-VG--PAEAL-----FTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEcCCCC-CC--ccccc-----CCHHHHHHHHHhcCCCcEEEEe
Confidence 9863211 11 11111 1258999999999999999884
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-07 Score=77.14 Aligned_cols=122 Identities=19% Similarity=0.136 Sum_probs=90.3
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCc-ccEEEecch
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNY-FDVVVSAAF 197 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~Iv~~~~ 197 (293)
|.||||-.|.+++.|++.-. ..+++++|+++.-++.|+++.+..++.++++++.+|..+. +..+. .|.|+...+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~----~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK----APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS----EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecC
Confidence 68999999999999998743 3589999999999999999999999999999999997762 33333 788886543
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEe
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
=.. -..+++.+....++....|++........+++.|.+.||..++-.
T Consensus 76 GG~--------------lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 76 GGE--------------LIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp -HH--------------HHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEE
T ss_pred CHH--------------HHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeE
Confidence 221 335677777777777778888888888899999999999876543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=89.34 Aligned_cols=133 Identities=16% Similarity=0.083 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~I 192 (293)
....+||||||.|.++..+|...| ...++|+|++...+..+.+.+...++ .++.+...|+..+. ++++++|.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p----~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP----DALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC----CCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEE
Confidence 355799999999999999999987 46899999999999988888887776 46888888875322 567889999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHcC-Ccce
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELK-MEDI 256 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~g-f~~~ 256 (293)
..+.|=-|.......+=. -...+++.+++.|+|||.+.+.+... .....+.+.+.+ |+.+
T Consensus 422 ~i~FPDPWpKkrh~krRl----~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRI----FNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred EEECCCCCCCCCCccccc----cCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEec
Confidence 998664332211100000 12468999999999999998854321 122344555554 6543
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-07 Score=76.42 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=80.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC---------CCCceEEEEcCCCCCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG---------VQEYVTAREGDVRSLP 183 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~---------~~~~v~~~~~d~~~~~ 183 (293)
+.|+.+.||+|+|||.++..++..+...| ...+|+|.-++.++.+++|+...- -..++.++.+|.+...
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g--~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATG--GNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCC--ccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 46788999999999999999987766433 355999999999999999976542 1245788999998865
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.+..+||.|.+...-. ..-+++...|+|||.+++
T Consensus 158 ~e~a~YDaIhvGAaa~------------------~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 158 AEQAPYDAIHVGAAAS------------------ELPQELLDQLKPGGRLLI 191 (237)
T ss_pred CccCCcceEEEccCcc------------------ccHHHHHHhhccCCeEEE
Confidence 5667899999974433 233556678999999888
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.7e-07 Score=76.51 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=60.4
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHH-HHHHHHhcCCCCce-EEEEcCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLS-TLRTAKMEGVQEYV-TAREGDVRSL 182 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~-a~~~~~~~~~~~~v-~~~~~d~~~~ 182 (293)
.+++......++.++||+|||+|.++..+++.- ..+|+|+|+++.++.. .+++ .++ .+...|+...
T Consensus 65 ~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g-----a~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~ 132 (228)
T TIGR00478 65 EALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG-----AKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYV 132 (228)
T ss_pred HHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccC
Confidence 344444322356789999999999999888752 2589999999987765 2222 112 2333444432
Q ss_pred CC-----CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 183 PF-----GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 183 ~~-----~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.. .-..+|+++++. ...+..+.+.|+| |.+++
T Consensus 133 ~~~~~~~d~~~~DvsfiS~--------------------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 133 TPADIFPDFATFDVSFISL--------------------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred CHhHcCCCceeeeEEEeeh--------------------HhHHHHHHHHhCc-CeEEE
Confidence 21 112456555432 2356778888999 76654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-07 Score=80.31 Aligned_cols=132 Identities=13% Similarity=0.032 Sum_probs=87.6
Q ss_pred hcccccccchhhhhhHhhhcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEE
Q 022698 69 AAGFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVG 148 (293)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~ 148 (293)
.+..-|..+.++.++ .....+|.+. +-++.-.+ ..+ ..+++||=||.|.|..++.++++ + .+|+.
T Consensus 35 es~~fGr~LvLD~~~-~te~dEfiYH-----EmLvHppl--~~h-~~pk~VLIiGGGDGg~~REvLkh-~-----~~v~m 99 (262)
T PRK00536 35 KSKDFGEIAMLNKQL-LFKNFLHIES-----ELLAHMGG--CTK-KELKEVLIVDGFDLELAHQLFKY-D-----THVDF 99 (262)
T ss_pred EccccccEEEEeeee-eecchhhhHH-----HHHHHHHH--hhC-CCCCeEEEEcCCchHHHHHHHCc-C-----CeeEE
Confidence 344456666666334 2344444432 22222111 122 44689999999999999999887 2 39999
Q ss_pred EeCCHHHHHHHHHHHHhc---CCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHH
Q 022698 149 LDCKKRTTLSTLRTAKME---GVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVR 225 (293)
Q Consensus 149 vDis~~~l~~a~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (293)
+||++..++.+++.+... --++|++++.. +.+ ...++||+|++... ....+++.+.+
T Consensus 100 VeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs~-----------------~~~~fy~~~~~ 159 (262)
T PRK00536 100 VQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQE-----------------PDIHKIDGLKR 159 (262)
T ss_pred EECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcCC-----------------CChHHHHHHHH
Confidence 999999999999954331 11357777752 221 12368999998743 12478899999
Q ss_pred cccCCcEEEE
Q 022698 226 VLKPGGVGVV 235 (293)
Q Consensus 226 ~LkpgG~l~~ 235 (293)
.|+|||.++.
T Consensus 160 ~L~~~Gi~v~ 169 (262)
T PRK00536 160 MLKEDGVFIS 169 (262)
T ss_pred hcCCCcEEEE
Confidence 9999999988
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.2e-07 Score=78.34 Aligned_cols=100 Identities=19% Similarity=0.199 Sum_probs=80.5
Q ss_pred ccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 91 FFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
.++.++-.++.+++.+++.+. ..++..|+|+|+|.|.++..|++.. .+++++|+++...+..++.... .+
T Consensus 7 ~~gQnFL~~~~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~------~~v~~vE~d~~~~~~L~~~~~~---~~ 76 (262)
T PF00398_consen 7 SLGQNFLVDPNIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG------KRVIAVEIDPDLAKHLKERFAS---NP 76 (262)
T ss_dssp GCTSSEEEHHHHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS------SEEEEEESSHHHHHHHHHHCTT---CS
T ss_pred CCCcCeeCCHHHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc------CcceeecCcHhHHHHHHHHhhh---cc
Confidence 456666678889999998885 4577899999999999999998874 4999999999999988887662 35
Q ss_pred ceEEEEcCCCCCCCCC---CcccEEEecchhhh
Q 022698 171 YVTAREGDVRSLPFGD---NYFDVVVSAAFFHT 200 (293)
Q Consensus 171 ~v~~~~~d~~~~~~~~---~~fD~Iv~~~~~~~ 200 (293)
+++++.+|+.++.... +....|++|.||+.
T Consensus 77 ~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~i 109 (262)
T PF00398_consen 77 NVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNI 109 (262)
T ss_dssp SEEEEES-TTTSCGGGHCSSSEEEEEEEETGTG
T ss_pred cceeeecchhccccHHhhcCCceEEEEEecccc
Confidence 6999999999876433 45679999999843
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.5e-08 Score=89.60 Aligned_cols=132 Identities=23% Similarity=0.258 Sum_probs=80.8
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHH-HHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT-AKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
.+||+|||+|.++..|..+ .|+.+-+.+.--..++.. +.+.|+...+. ..--..+|++++.||+|.|..
T Consensus 120 ~~LDvGcG~aSF~a~l~~r--------~V~t~s~a~~d~~~~qvqfaleRGvpa~~~--~~~s~rLPfp~~~fDmvHcsr 189 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER--------NVTTMSFAPNDEHEAQVQFALERGVPAMIG--VLGSQRLPFPSNAFDMVHCSR 189 (506)
T ss_pred EEEeccceeehhHHHHhhC--------CceEEEcccccCCchhhhhhhhcCcchhhh--hhccccccCCccchhhhhccc
Confidence 5899999999999988865 445544443322222221 22235432111 111245789999999999998
Q ss_pred hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc-----------hHHHHHHHHcCCcceEEeeeeccc
Q 022698 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV-----------PEYVRRLQELKMEDIRVSERVTAF 265 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------~~~~~~l~~~gf~~~~~~~~~~~~ 265 (293)
....... +-..++-++-|+|+|||.++.+..... ..+.++.+...++.+....
T Consensus 190 c~i~W~~-----------~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~----- 253 (506)
T PF03141_consen 190 CLIPWHP-----------NDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKG----- 253 (506)
T ss_pred ccccchh-----------cccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeC-----
Confidence 7765441 223578889999999999998654322 1244444556666554432
Q ss_pred eecceeeeeecCCC
Q 022698 266 MVSSHIVSFRKPSQ 279 (293)
Q Consensus 266 ~~~~~~~~~~~~~~ 279 (293)
.+..++||..
T Consensus 254 ----~~aIwqKp~~ 263 (506)
T PF03141_consen 254 ----DTAIWQKPTN 263 (506)
T ss_pred ----CEEEEeccCC
Confidence 3566676654
|
; GO: 0008168 methyltransferase activity |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-07 Score=80.27 Aligned_cols=142 Identities=22% Similarity=0.212 Sum_probs=98.9
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP- 183 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~- 183 (293)
.+...+....++.+|||++++.|.-+.+++..+... ..+++.|+++..+...+.++++.|.. ++.....|.....
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~---g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~ 150 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNK---GEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDP 150 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTT---SEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHH
T ss_pred ccccccccccccccccccccCCCCceeeeeecccch---hHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccc
Confidence 333333345678899999999999999999988753 59999999999999999999999874 4777777776541
Q ss_pred -CCCCcccEEEecchhhhhc---cccC-------cchhhhHHHHHHHHHHHHHcc----cCCcEEEEEcCCC----chHH
Q 022698 184 -FGDNYFDVVVSAAFFHTVG---KEYG-------HRTVEAAAERMRVLGEMVRVL----KPGGVGVVWDLLH----VPEY 244 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~---~~~~-------~~~~~~~~~~~~~l~~~~~~L----kpgG~l~~~~~~~----~~~~ 244 (293)
.....||.|++..|..... ..+. .....-..-..++++.+.+.+ ||||+++.+.+.. .++.
T Consensus 151 ~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~v 230 (283)
T PF01189_consen 151 KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEV 230 (283)
T ss_dssp HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHH
T ss_pred cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHH
Confidence 2234699999987754332 1111 111111123456899999999 9999999976643 4455
Q ss_pred HHHHHH
Q 022698 245 VRRLQE 250 (293)
Q Consensus 245 ~~~l~~ 250 (293)
++.+-+
T Consensus 231 V~~fl~ 236 (283)
T PF01189_consen 231 VEKFLK 236 (283)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-06 Score=74.59 Aligned_cols=128 Identities=21% Similarity=0.192 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-----------------------------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM----------------------------- 165 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~----------------------------- 165 (293)
...+||--|||.|.++..++.. +..+.|.|.|--|+-..+-.+..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~------G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v 129 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL------GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPV 129 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc------cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCce
Confidence 3568999999999999999876 46999999999987644432220
Q ss_pred ----------cCCCCceEEEEcCCCCCCCC---CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcE
Q 022698 166 ----------EGVQEYVTAREGDVRSLPFG---DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232 (293)
Q Consensus 166 ----------~~~~~~v~~~~~d~~~~~~~---~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 232 (293)
.....++....+|+.+.-.+ .++||+|+.+..+.-.+ +..+.++.+.++|||||.
T Consensus 130 ~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~------------Ni~~Yi~tI~~lLkpgG~ 197 (270)
T PF07942_consen 130 RIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE------------NIIEYIETIEHLLKPGGY 197 (270)
T ss_pred EeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH------------HHHHHHHHHHHHhccCCE
Confidence 01112455556666554322 36899999997776655 899999999999999997
Q ss_pred EEEEcC-----------------CCchHHHHHHHHcCCcceEEee
Q 022698 233 GVVWDL-----------------LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 233 l~~~~~-----------------~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
.+=.++ ...+++.+++++.||+.++...
T Consensus 198 WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 198 WINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred EEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 764221 1246889999999999877655
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-06 Score=75.54 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+.+|||+|||+|..+.++...++. -.+++++|.|+.|++.++..++................+. .+..+.|+|++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~---~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~DLvi~ 108 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPS---LKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF-LPFPPDDLVIA 108 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcC---ceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc-ccCCCCcEEEE
Confidence 3568999999999988877777762 3589999999999999988766543211111111111111 11223499999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCch------HHHHHHHHcCCcceE
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP------EYVRRLQELKMEDIR 257 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~------~~~~~l~~~gf~~~~ 257 (293)
..++..++. .....+++.+.+.+.+ .|++++..+.. +.++.|.+.|+..+.
T Consensus 109 s~~L~EL~~----------~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 109 SYVLNELPS----------AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred ehhhhcCCc----------hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceEC
Confidence 999988872 3566788888887766 88888877654 455556566665443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.3e-07 Score=81.26 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=72.5
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+++.+. ..++..++|.+||.|..+..+++.++. ..+|+|+|.++.|++.+++++.. .+++.+++.|+.+
T Consensus 7 ll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~---~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~ 79 (296)
T PRK00050 7 LLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGP---KGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSN 79 (296)
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCC---CCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHH
Confidence 5566676664 356779999999999999999988753 35999999999999999988755 3679999999987
Q ss_pred CC--CCCC--cccEEEecchhhhh
Q 022698 182 LP--FGDN--YFDVVVSAAFFHTV 201 (293)
Q Consensus 182 ~~--~~~~--~fD~Iv~~~~~~~~ 201 (293)
+. .+.+ ++|.|+++..+...
T Consensus 80 l~~~l~~~~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 80 LKEVLAEGLGKVDGILLDLGVSSP 103 (296)
T ss_pred HHHHHHcCCCccCEEEECCCcccc
Confidence 53 1222 79999987655433
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4e-07 Score=83.43 Aligned_cols=129 Identities=20% Similarity=0.246 Sum_probs=88.8
Q ss_pred cccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC
Q 022698 88 AGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG 167 (293)
Q Consensus 88 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~ 167 (293)
...||..+....+.+...+-+.+. ...+..++|+.||||.+++++++.. .+|+|+++++++++.|++|+..||
T Consensus 357 p~AFFQ~Nt~~aevLys~i~e~~~-l~~~k~llDv~CGTG~iglala~~~------~~ViGvEi~~~aV~dA~~nA~~Ng 429 (534)
T KOG2187|consen 357 PGAFFQTNTSAAEVLYSTIGEWAG-LPADKTLLDVCCGTGTIGLALARGV------KRVIGVEISPDAVEDAEKNAQING 429 (534)
T ss_pred CchhhccCcHHHHHHHHHHHHHhC-CCCCcEEEEEeecCCceehhhhccc------cceeeeecChhhcchhhhcchhcC
Confidence 344555555555556665555553 6677899999999999999999874 499999999999999999999999
Q ss_pred CCCceEEEEcCCCCC-C-CCC---Cccc-EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 168 VQEYVTAREGDVRSL-P-FGD---NYFD-VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 168 ~~~~v~~~~~d~~~~-~-~~~---~~fD-~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+. +.+|+++-++++ + +.. ++-+ +++.+|+=..+. ..+++.+.+.-++--.++++..
T Consensus 430 is-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh--------------~~~ik~l~~~~~~~rlvyvSCn 491 (534)
T KOG2187|consen 430 IS-NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLH--------------MKVIKALRAYKNPRRLVYVSCN 491 (534)
T ss_pred cc-ceeeeecchhhccchhcccCCCCCceEEEECCCccccc--------------HHHHHHHHhccCccceEEEEcC
Confidence 84 599999955553 1 111 2345 455555432221 3566666665557666776554
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-06 Score=66.01 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCCh-HHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGI-LLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~-~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
+.+.+.+.+.. ..+.+|||||||+|. .+..|++. +.+|+++|+++.+++.++++ + +.++..|+.
T Consensus 4 i~~~l~~~~~~-~~~~kileIG~GfG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf 68 (134)
T PRK04148 4 IAEFIAENYEK-GKNKKIVELGIGFYFKVAKKLKES------GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLF 68 (134)
T ss_pred HHHHHHHhccc-ccCCEEEEEEecCCHHHHHHHHHC------CCEEEEEECCHHHHHHHHHh----C----CeEEECcCC
Confidence 45555555543 345789999999996 66666643 46999999999987777655 2 678999998
Q ss_pred CCCCC-CCcccEEEecch
Q 022698 181 SLPFG-DNYFDVVVSAAF 197 (293)
Q Consensus 181 ~~~~~-~~~fD~Iv~~~~ 197 (293)
+..+. -..+|+|.+..|
T Consensus 69 ~p~~~~y~~a~liysirp 86 (134)
T PRK04148 69 NPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred CCCHHHHhcCCEEEEeCC
Confidence 85432 256999998644
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-07 Score=78.75 Aligned_cols=110 Identities=17% Similarity=0.070 Sum_probs=78.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC---CCceEEEEcCCCCCC-CCCC-cc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV---QEYVTAREGDVRSLP-FGDN-YF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~---~~~v~~~~~d~~~~~-~~~~-~f 189 (293)
.+.+||=||.|.|..+..+++..+ ..+++++|+++..++.+++.+..... .+|++++..|...+- -... +|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~----~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPP----VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-----SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-E
T ss_pred CcCceEEEcCCChhhhhhhhhcCC----cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcc
Confidence 567999999999999988876543 35999999999999999998765321 368999999987632 1233 89
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|+|+....-...+ .... --.++++.+.+.|+|||++++-
T Consensus 152 DvIi~D~~dp~~~---~~~l-----~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 152 DVIIVDLTDPDGP---APNL-----FTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEEEEESSSTTSC---GGGG-----SSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEeCCCCCCC---cccc-----cCHHHHHHHHhhcCCCcEEEEE
Confidence 9999854321111 0001 1258999999999999999883
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.3e-07 Score=76.71 Aligned_cols=133 Identities=23% Similarity=0.253 Sum_probs=85.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC---------------------------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--------------------------- 167 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--------------------------- 167 (293)
.+.++||||||+-..-. +...+ ...+|+..|.++..++..++.++..+
T Consensus 56 ~g~~llDiGsGPtiy~~--lsa~~---~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQL--LSACE---WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp -EEEEEEES-TT--GGG--TTGGG---TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhh--hhHHH---hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 45689999999954422 11111 12489999999988876666543111
Q ss_pred CCCce-EEEEcCCCCCC-CCC-----CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-
Q 022698 168 VQEYV-TAREGDVRSLP-FGD-----NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL- 239 (293)
Q Consensus 168 ~~~~v-~~~~~d~~~~~-~~~-----~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~- 239 (293)
+...| .++.+|+.+.+ +.. .+||+|++...+.....+ .+.....++++.++|||||.|+++...
T Consensus 131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d--------~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKD--------LDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SS--------HHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCC--------HHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 01113 47788987743 222 259999999888766522 346788999999999999999985432
Q ss_pred ----------------CchHHHHHHHHcCCcceEEee
Q 022698 240 ----------------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 ----------------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
..+.+.+.++++||...+..+
T Consensus 203 ~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 203 STYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp -SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ceeEEECCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 345689999999998777663
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-06 Score=71.23 Aligned_cols=123 Identities=24% Similarity=0.219 Sum_probs=94.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCc-ccEEEe
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNY-FDVVVS 194 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~Iv~ 194 (293)
+.+++|||+|.|--++.++-.+| ..+++-+|....-+...+.-....++ ++++++++.++++.. ..+ ||+|+|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p----~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~-~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP----DLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQ-EKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc----CCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhccc-ccccCcEEEe
Confidence 57999999999999999987766 45799999999999999999888887 569999999998652 223 999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC----CCchHHHHHHHHcCCcceEEee
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL----LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
..+- +...+..-+...+++||.+++.-. ...++....+...|+....+..
T Consensus 142 RAva----------------~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~ 195 (215)
T COG0357 142 RAVA----------------SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFS 195 (215)
T ss_pred ehcc----------------chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEE
Confidence 7542 334556667789999998765322 2334566666777887776654
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.1e-07 Score=76.25 Aligned_cols=102 Identities=22% Similarity=0.227 Sum_probs=75.2
Q ss_pred cccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC
Q 022698 88 AGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG 167 (293)
Q Consensus 88 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~ 167 (293)
...|+..+.+....++..+.... ....|+|.-||.|..++..+... ..|+++|++|.-+..|+.|++..|
T Consensus 71 e~wfsvTpe~ia~~iA~~v~~~~----~~~~iidaf~g~gGntiqfa~~~------~~VisIdiDPikIa~AkhNaeiYG 140 (263)
T KOG2730|consen 71 EGWFSVTPEKIAEHIANRVVACM----NAEVIVDAFCGVGGNTIQFALQG------PYVIAIDIDPVKIACARHNAEVYG 140 (263)
T ss_pred cceEEeccHHHHHHHHHHHHHhc----CcchhhhhhhcCCchHHHHHHhC------CeEEEEeccHHHHHHHhccceeec
Confidence 33344444443333444333322 34589999999999998888774 489999999999999999999999
Q ss_pred CCCceEEEEcCCCCCC----CCCCcccEEEecchhh
Q 022698 168 VQEYVTAREGDVRSLP----FGDNYFDVVVSAAFFH 199 (293)
Q Consensus 168 ~~~~v~~~~~d~~~~~----~~~~~fD~Iv~~~~~~ 199 (293)
+.+++.|+++|+.++. +....+|+|+.++|..
T Consensus 141 I~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwg 176 (263)
T KOG2730|consen 141 VPDRITFICGDFLDLASKLKADKIKYDCVFLSPPWG 176 (263)
T ss_pred CCceeEEEechHHHHHHHHhhhhheeeeeecCCCCC
Confidence 9999999999998742 3344577888777643
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-05 Score=65.66 Aligned_cols=150 Identities=18% Similarity=0.211 Sum_probs=98.6
Q ss_pred ccchHHHHHHHHHhcC--CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceE
Q 022698 96 VPLHYDMAQRMVGSVN--DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVT 173 (293)
Q Consensus 96 ~~~~~~~~~~l~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~ 173 (293)
.+....+...++.-+. .+.++.+||-+|+.+|+...+++.-... ...|+|+|.|+...+..-.-++.. +|+-
T Consensus 52 ~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~---~G~VYaVEfs~r~~rdL~~la~~R---~NIi 125 (229)
T PF01269_consen 52 NPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGP---DGVVYAVEFSPRSMRDLLNLAKKR---PNII 125 (229)
T ss_dssp -TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTT---TSEEEEEESSHHHHHHHHHHHHHS---TTEE
T ss_pred CchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCC---CCcEEEEEecchhHHHHHHHhccC---Ccee
Confidence 3455667777765543 3568889999999999999999887764 359999999998777666555543 4577
Q ss_pred EEEcCCCCCC---CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE------EcCCCch--
Q 022698 174 AREGDVRSLP---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV------WDLLHVP-- 242 (293)
Q Consensus 174 ~~~~d~~~~~---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~------~~~~~~~-- 242 (293)
-+..|+.... .--+.+|+|++.-.- .+....+..++...||+||.+++ ++....+
T Consensus 126 PIl~DAr~P~~Y~~lv~~VDvI~~DVaQ--------------p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~ 191 (229)
T PF01269_consen 126 PILEDARHPEKYRMLVEMVDVIFQDVAQ--------------PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEE 191 (229)
T ss_dssp EEES-TTSGGGGTTTS--EEEEEEE-SS--------------TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHH
T ss_pred eeeccCCChHHhhcccccccEEEecCCC--------------hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHH
Confidence 7889988622 113579999986331 11455677888899999999887 3333332
Q ss_pred ---HHHHHHHHcCCcceEEeeeeccce
Q 022698 243 ---EYVRRLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 243 ---~~~~~l~~~gf~~~~~~~~~~~~~ 266 (293)
+..+.|++.||+.++.. ++.+|.
T Consensus 192 vf~~e~~~L~~~~~~~~e~i-~LePy~ 217 (229)
T PF01269_consen 192 VFAEEVKKLKEEGFKPLEQI-TLEPYE 217 (229)
T ss_dssp HHHHHHHHHHCTTCEEEEEE-E-TTTS
T ss_pred HHHHHHHHHHHcCCChheEe-ccCCCC
Confidence 35666777799987765 455544
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.3e-06 Score=70.28 Aligned_cols=121 Identities=19% Similarity=0.173 Sum_probs=73.8
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH-------hcCC-C
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK-------MEGV-Q 169 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~-------~~~~-~ 169 (293)
+.+.....+++.+. +.++..++|+|||.|......+...+ -.+.+|+|+.+...+.|+...+ ..+. .
T Consensus 26 i~~~~~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~----~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~ 100 (205)
T PF08123_consen 26 ISPEFVSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTG----CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRP 100 (205)
T ss_dssp CHHHHHHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB--
T ss_pred cCHHHHHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcC----CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34556666777664 67788999999999999888876654 2469999999998877765432 2232 2
Q ss_pred CceEEEEcCCCCCCCC---CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 170 EYVTAREGDVRSLPFG---DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 170 ~~v~~~~~d~~~~~~~---~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
.++++..+|+.+.+.. -...|+|++|+.... ++....+.+....||+|.+++-.
T Consensus 101 ~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~-------------~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 101 GKVELIHGDFLDPDFVKDIWSDADVVFVNNTCFD-------------PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp -EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT--------------HHHHHHHHHHHTTS-TT-EEEES
T ss_pred ccceeeccCccccHhHhhhhcCCCEEEEeccccC-------------HHHHHHHHHHHhcCCCCCEEEEC
Confidence 4588889998764321 134799999876432 14555667777889998887653
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.2e-07 Score=79.59 Aligned_cols=136 Identities=24% Similarity=0.282 Sum_probs=110.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.+...++|+|||.|.....+.... .+.++++|.++.-+.++........+.++..++..|....|++++.||.+-
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~-----~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK-----KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc-----cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence 455589999999999988776542 368999999999888888777776776667778899999889999999999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-----------------------------CCchHH
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-----------------------------LHVPEY 244 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-----------------------------~~~~~~ 244 (293)
+.....+.+ ++...+++++++++|||.++..+. ....++
T Consensus 184 ~ld~~~~~~------------~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~ 251 (364)
T KOG1269|consen 184 FLEVVCHAP------------DLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDV 251 (364)
T ss_pred EEeecccCC------------cHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccH
Confidence 999999999 999999999999999999997321 112357
Q ss_pred HHHHHHcCCcceEEeeeeccce
Q 022698 245 VRRLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 245 ~~~l~~~gf~~~~~~~~~~~~~ 266 (293)
...+...||..+...++.....
T Consensus 252 ~~~~~~~~~~~~~~~~dl~~~~ 273 (364)
T KOG1269|consen 252 FDLLKSFGFEHLKLEKDLALKS 273 (364)
T ss_pred HHHHhhccchhhhhcccccCCC
Confidence 7777888888877776666544
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-06 Score=69.20 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+..+- +.-.+++|||+|+|+|-.++..++... ..|++.|+.+...+..+-|++.|++. +.+...|...
T Consensus 67 lAR~i~~~P-etVrgkrVLd~gagsgLvaIAaa~aGA-----~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g 138 (218)
T COG3897 67 LARYIDDHP-ETVRGKRVLDLGAGSGLVAIAAARAGA-----AEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG 138 (218)
T ss_pred HHHHHhcCc-cccccceeeecccccChHHHHHHHhhh-----HHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC
Confidence 444444443 234678999999999999888776643 58999999999888888999999865 8888888765
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++..||+|+...+++.-+ ....++. +...|+..|.-+++.
T Consensus 139 ---~~~~~Dl~LagDlfy~~~------------~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 139 ---SPPAFDLLLAGDLFYNHT------------EADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred ---CCcceeEEEeeceecCch------------HHHHHHH-HHHHHHhCCCEEEEe
Confidence 356799999988776554 4456666 666666666555544
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-06 Score=70.81 Aligned_cols=129 Identities=21% Similarity=0.251 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--------CC-
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--------FG- 185 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~- 185 (293)
.+.++||+||++|.++..+++... +..+|+|+|+.+. ... ..+.++++|+.+.. ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~---~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~ 87 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGG---PAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPE 87 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTT---TEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred cccEEEEcCCcccceeeeeeeccc---ccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhccc
Confidence 357999999999999999987751 1469999999876 111 22556666654311 11
Q ss_pred -CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE--cCCCchHHHHHHHHcCCcceEEee
Q 022698 186 -DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW--DLLHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
..++|+|+|......... ...+.....+-....+.-+...|+|||.+++- .....+++...++. .|+.+.+.+
T Consensus 88 ~~~~~dlv~~D~~~~~~g~-~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~-~F~~v~~~K 163 (181)
T PF01728_consen 88 SGEKFDLVLSDMAPNVSGD-RNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKR-CFSKVKIVK 163 (181)
T ss_dssp TTCSESEEEE-------SS-HHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHH-HHHHEEEEE
T ss_pred cccCcceeccccccCCCCc-hhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHh-CCeEEEEEE
Confidence 268999999863322221 01111111112233444555789999988762 22222456655544 677766654
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-05 Score=64.77 Aligned_cols=132 Identities=21% Similarity=0.159 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC---CCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG---DNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~ 191 (293)
.+++||-+|=..- .+++++.... ..+|+.+|+++..++..++.++..|+. ++.+..|+++ |++ .++||+
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~----~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~-~LP~~~~~~fD~ 115 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGL----PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRD-PLPEELRGKFDV 115 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT------SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TTTSS-BSE
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCC----CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccc-cCCHHHhcCCCE
Confidence 4679999995443 3333332211 469999999999999999999999976 9999999987 333 479999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc-------hHHHHHHHHcCCcceEEeeeecc
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV-------PEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
++.+||+-.- ....++.+....||..|...+....+. -++.+.+.+.||..-.+..++..
T Consensus 116 f~TDPPyT~~-------------G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~ 182 (243)
T PF01861_consen 116 FFTDPPYTPE-------------GLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIPDFNR 182 (243)
T ss_dssp EEE---SSHH-------------HHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEEEEEE
T ss_pred EEeCCCCCHH-------------HHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHhhhcc
Confidence 9999998542 677899999999998773333232222 24677778999998888888877
Q ss_pred cee
Q 022698 265 FMV 267 (293)
Q Consensus 265 ~~~ 267 (293)
+..
T Consensus 183 Y~g 185 (243)
T PF01861_consen 183 YEG 185 (243)
T ss_dssp B--
T ss_pred ccc
Confidence 764
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-05 Score=71.94 Aligned_cols=123 Identities=23% Similarity=0.222 Sum_probs=91.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---CCCCcc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---FGDNYF 189 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~f 189 (293)
..++.||||+++..|.-+.+++..+... ..|+|.|.+...+...+.|+.+.|+. +..+...|..++| ++ ++|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~---G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~-~~f 313 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNT---GVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFP-GSF 313 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCC---ceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccC-ccc
Confidence 4678999999999999999999998765 49999999999999999999999974 4667778877665 33 389
Q ss_pred cEEEecchhhhhc---cccCcchhhhHHH-------HHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 190 DVVVSAAFFHTVG---KEYGHRTVEAAAE-------RMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 190 D~Iv~~~~~~~~~---~~~~~~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
|-|....|..... .+...+.-....+ ..+++-.+..++++||+|+.+.+.-
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 9999887765411 1222222211112 2357777888999999999966543
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-05 Score=61.13 Aligned_cols=87 Identities=23% Similarity=0.371 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEEcCCCCCCCCCCcccE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--VQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
.+..+|+|+|||.|.++..++..+++..++.+|+++|.++..++.++++.+..+ ...+..+...+..+.. .....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCeE
Confidence 456789999999999999999866654456899999999999999999888776 4455677666655432 2456788
Q ss_pred EEecchhhhh
Q 022698 192 VVSAAFFHTV 201 (293)
Q Consensus 192 Iv~~~~~~~~ 201 (293)
++....-..+
T Consensus 103 ~vgLHaCG~L 112 (141)
T PF13679_consen 103 LVGLHACGDL 112 (141)
T ss_pred EEEeecccch
Confidence 8876554443
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00011 Score=60.66 Aligned_cols=128 Identities=22% Similarity=0.257 Sum_probs=79.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--------C
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--------F 184 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~ 184 (293)
+.++.+|+|+|+..|.++..+++.... +.+|+++|+.|-. ..+.|.++++|+..-+ +
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~---~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGA---GGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCC---CCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHc
Confidence 457789999999999999999888764 3469999998751 1134899999998643 2
Q ss_pred CCCcccEEEecchhhhhccccCcchhhh---HHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHcCCcceEEe
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEA---AAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~gf~~~~~~ 259 (293)
...++|+|+|...-... |...... ..-....+.-+..+|+|||.+++-.+.. .+++...+ +..|..+++.
T Consensus 108 ~~~~~DvV~sD~ap~~~----g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~-~~~F~~v~~~ 182 (205)
T COG0293 108 GGAPVDVVLSDMAPNTS----GNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKAL-RRLFRKVKIF 182 (205)
T ss_pred CCCCcceEEecCCCCcC----CCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHH-HHhhceeEEe
Confidence 33457999986432110 1100000 0011234555568999999998844322 23344444 3347666654
Q ss_pred e
Q 022698 260 E 260 (293)
Q Consensus 260 ~ 260 (293)
+
T Consensus 183 K 183 (205)
T COG0293 183 K 183 (205)
T ss_pred c
Confidence 3
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.5e-05 Score=60.17 Aligned_cols=103 Identities=35% Similarity=0.417 Sum_probs=69.7
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC--CCCCC-CcccEEEec
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS--LPFGD-NYFDVVVSA 195 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fD~Iv~~ 195 (293)
++|+|||+|... .+....+ . ...++++|+++.++..++..... .....+.+...|... .++.. ..||++ +.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~-~--~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG-R--GAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC-C--CceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 999999999976 2332221 1 13789999999999885544432 211115778888775 56655 489999 54
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
....+.. +....+.++.+.|+|+|.+++....
T Consensus 126 ~~~~~~~------------~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHLL------------PPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eeehhcC------------CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 4443332 2568889999999999999885543
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.9e-06 Score=66.69 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=75.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
..+.|+|+|+|.++...++.. .+|++++.+|...+.|.+|...+|. .+++++.+|+.+..+ ...|+|+|-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A------~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA------ERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhhh------ceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHH
Confidence 579999999999987776652 4999999999999999999988876 569999999999876 4579999842
Q ss_pred hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
.=-.+- .+....++..+...|+-++.++
T Consensus 105 lDTaLi----------~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 105 LDTALI----------EEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hhHHhh----------cccccHHHHHHHHHhhcCCccc
Confidence 211111 1133456777777888888776
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-06 Score=65.37 Aligned_cols=103 Identities=25% Similarity=0.336 Sum_probs=44.0
Q ss_pred EEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-CCCCcccEEEecch
Q 022698 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-FGDNYFDVVVSAAF 197 (293)
Q Consensus 120 LDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~Iv~~~~ 197 (293)
||+|+..|..+..+++.++..+ ..+++++|..+. .+..++.++..+..++++++.+|..+. + +..+++|+|+....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~-~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNG-RGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp ---------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred Cccccccccccccccccccccc-cCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 6899999999999988776532 148999999995 334555555555667799999998653 1 23478999998642
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|..+ .....++.+.+.|+|||.+++-|
T Consensus 79 -H~~~------------~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 -HSYE------------AVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HH------------HHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCHH------------HHHHHHHHHHHHcCCCeEEEEeC
Confidence 1111 45677888999999999998865
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.5e-05 Score=60.44 Aligned_cols=92 Identities=16% Similarity=0.228 Sum_probs=63.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHH
Q 022698 145 RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGE 222 (293)
Q Consensus 145 ~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (293)
+|+|+||.++|++..+++++..+..+++.++..+-..+. .+.+++|+++.|..|-.-. ...-....+.-...++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPgg---Dk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGG---DKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS----TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCC---CCCCCcCcHHHHHHHHH
Confidence 589999999999999999999988888999998877654 2335899999996653221 11222233456778999
Q ss_pred HHHcccCCcEEEEEcCC
Q 022698 223 MVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 223 ~~~~LkpgG~l~~~~~~ 239 (293)
+.++|+|||++.++-+.
T Consensus 78 al~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 78 ALELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHHEEEEEEEEEEE--
T ss_pred HHHhhccCCEEEEEEeC
Confidence 99999999999886655
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.3e-05 Score=62.17 Aligned_cols=125 Identities=20% Similarity=0.082 Sum_probs=96.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
+.++.||||-.+.+++.|.+..+ ...+++.|+++..++.|.+++..+++.+++++..+|....-..+..+|+|+..
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~----~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIA 92 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNP----ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIA 92 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCC----cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEe
Confidence 44599999999999999998755 56999999999999999999999999999999999986532234479998865
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEE
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~ 258 (293)
..-.. -...++++-...|+-=-++++-...+..+.++.+.+.+|..+.-
T Consensus 93 GMGG~--------------lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 93 GMGGT--------------LIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAE 141 (226)
T ss_pred CCcHH--------------HHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeee
Confidence 43211 23456666666666444666666667788999999999985543
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.1e-05 Score=70.65 Aligned_cols=136 Identities=20% Similarity=0.257 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
..++.+.+++.+.. .+..+|.|..||+|.+.....+.+.+......++|.|+++.....++.|.-.+++...+.....|
T Consensus 171 P~~v~~liv~~l~~-~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d 249 (489)
T COG0286 171 PREVSELIVELLDP-EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD 249 (489)
T ss_pred hHHHHHHHHHHcCC-CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence 34566666666654 55669999999999999988888764321267999999999999999999888875334555555
Q ss_pred CCCCCC-----CCCcccEEEecchhhhhcccc------------CcchhhhHHHH-HHHHHHHHHcccCCcEEEE
Q 022698 179 VRSLPF-----GDNYFDVVVSAAFFHTVGKEY------------GHRTVEAAAER-MRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 179 ~~~~~~-----~~~~fD~Iv~~~~~~~~~~~~------------~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~ 235 (293)
-..-|. ..++||.|++|||+....... ....+.+.... ..++..+...|+|||+..+
T Consensus 250 tl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 250 TLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred cccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 544332 236799999999996211100 01111111122 6789999999999886554
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.06 E-value=5e-05 Score=65.77 Aligned_cols=108 Identities=21% Similarity=0.226 Sum_probs=66.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH-hcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK-MEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
+.+|+=||+|.=-++..+.... .+.+..++++|+++.+.+.+++-.+ ..++..++.|+.+|..+.+..-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~--~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQ--HGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH----HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHH--hCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 4599999999865555544421 1225689999999999999998877 556677899999999876544467999997
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
........ ++..+++..+.+.++||..+++-
T Consensus 199 AalVg~~~-----------e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 199 AALVGMDA-----------EPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -TT-S---------------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhhccccc-----------chHHHHHHHHHhhCCCCcEEEEe
Confidence 65544221 25678999999999999999883
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.8e-06 Score=70.70 Aligned_cols=108 Identities=32% Similarity=0.530 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
..++.++... ..+..++|+|||.|..+. . ++..-+.+.|++...+..+++. +. .....+|+.
T Consensus 34 p~v~qfl~~~---~~gsv~~d~gCGngky~~----~----~p~~~~ig~D~c~~l~~~ak~~----~~---~~~~~ad~l 95 (293)
T KOG1331|consen 34 PMVRQFLDSQ---PTGSVGLDVGCGNGKYLG----V----NPLCLIIGCDLCTGLLGGAKRS----GG---DNVCRADAL 95 (293)
T ss_pred HHHHHHHhcc---CCcceeeecccCCcccCc----C----CCcceeeecchhhhhccccccC----CC---ceeehhhhh
Confidence 3455555544 346689999999996531 1 1356899999998865544432 21 257789999
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.+|+.+.+||.+++..++||+. .......+++++.+.|+|||...+
T Consensus 96 ~~p~~~~s~d~~lsiavihhls---------T~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLS---------TRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred cCCCCCCccccchhhhhhhhhh---------hHHHHHHHHHHHHHHhcCCCceEE
Confidence 9999899999999999999986 223456799999999999998665
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00011 Score=60.31 Aligned_cols=134 Identities=20% Similarity=0.198 Sum_probs=79.7
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH-------------
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK------------- 164 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~------------- 164 (293)
+..++.++.+..+.. ..+-++.|-+||+|.+...+.-..... -..|++.|+++++++.|++|+.
T Consensus 35 LAsEi~qR~l~~l~~-~~p~tLyDPCCG~gyLLTVlGLLh~~~--l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e 111 (246)
T PF11599_consen 35 LASEIFQRALHYLEG-KGPYTLYDPCCGSGYLLTVLGLLHRRR--LRRVYASDIDEDALELARKNLSLLTPEGLEARREE 111 (246)
T ss_dssp HHHHHHHHHHCTSSS--S-EEEEETT-TTSHHHHHHHHHTGGG--EEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-CCCeeeeccCCCccHHHHHHHHhhhHH--HHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence 445666666665543 455689999999999987776554422 2599999999999999999975
Q ss_pred ----------------------------hcCCCCceEEEEcCCCCCC-----CCCCcccEEEecchhhhhccccCcchhh
Q 022698 165 ----------------------------MEGVQEYVTAREGDVRSLP-----FGDNYFDVVVSAAFFHTVGKEYGHRTVE 211 (293)
Q Consensus 165 ----------------------------~~~~~~~v~~~~~d~~~~~-----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~ 211 (293)
..|-..-....+.|+++.. ......|+|+..-||..+. ++.+..
T Consensus 112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t---~W~g~~ 188 (246)
T PF11599_consen 112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMT---SWQGEG 188 (246)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSS---STTS--
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccc---cccCCC
Confidence 1111222567788887621 1123479999999987655 333333
Q ss_pred hHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 212 AAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 212 ~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.......++..++.+|-+++++.+++
T Consensus 189 ~~~p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 189 SGGPVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp -HHHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCcHHHHHHHHHhhCCCCcEEEEec
Confidence 33455689999999995555666644
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=6e-05 Score=66.56 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=96.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh---c--CC-CCceEEEEcCCCCCC-CCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM---E--GV-QEYVTAREGDVRSLP-FGD 186 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~---~--~~-~~~v~~~~~d~~~~~-~~~ 186 (293)
+...++|-+|.|.|-.++.+.+. |+ ..+++-+|.+|.|++.++++... | .. ++|++++..|+.++- -..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~---~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~ 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQ---VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CC---cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc
Confidence 44568999999999998888754 42 35999999999999999865321 1 11 368999999987642 234
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE--EcCCCch----HHHHHHHHcCCcceEEee
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV--WDLLHVP----EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~--~~~~~~~----~~~~~l~~~gf~~~~~~~ 260 (293)
..||.|+...+=-..+ ... .---.+++.-+.+.|+++|.+++ .+....+ .+..-++++||...-.+.
T Consensus 364 ~~fD~vIVDl~DP~tp------s~~-rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv 436 (508)
T COG4262 364 DMFDVVIVDLPDPSTP------SIG-RLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHV 436 (508)
T ss_pred ccccEEEEeCCCCCCc------chh-hhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEE
Confidence 6899999753211100 000 00124688889999999999988 2222333 255667899998777766
Q ss_pred eeccce
Q 022698 261 RVTAFM 266 (293)
Q Consensus 261 ~~~~~~ 266 (293)
++..|.
T Consensus 437 ~VPTFG 442 (508)
T COG4262 437 HVPTFG 442 (508)
T ss_pred ecCccc
Confidence 666553
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.2e-05 Score=65.11 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=71.8
Q ss_pred ccccCccchHHHHHHHHHhcCC----CC-CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q 022698 91 FFYSAVPLHYDMAQRMVGSVND----WS-TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM 165 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~----~~-~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~ 165 (293)
|.-...+...+....+.+.+.. +. +..++||||+|.-++= ..+..+.++.+.+|.|+++.+++.|+.+...
T Consensus 49 ~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIY----PliG~~eYgwrfvGseid~~sl~sA~~ii~~ 124 (292)
T COG3129 49 FLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIY----PLIGVHEYGWRFVGSEIDSQSLSSAKAIISA 124 (292)
T ss_pred CcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCccccc----ccccceeecceeecCccCHHHHHHHHHHHHc
Confidence 3333444455555555555432 22 4568999999987763 2222333468999999999999999999888
Q ss_pred c-CCCCceEEEEcCCCCCCC-----CCCcccEEEecchhhhhc
Q 022698 166 E-GVQEYVTAREGDVRSLPF-----GDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 166 ~-~~~~~v~~~~~d~~~~~~-----~~~~fD~Iv~~~~~~~~~ 202 (293)
| ++...++.+...-..--+ ..+.||.+.||||+|...
T Consensus 125 N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~ 167 (292)
T COG3129 125 NPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSA 167 (292)
T ss_pred CcchhhheeEEeccCccccccccccccceeeeEecCCCcchhH
Confidence 7 666667766543322112 246899999999998654
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=60.27 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDV 191 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~ 191 (293)
.++.+||++|-|-|.+...+-+.-| .+-+-++..|+.++..+.+.-.. ..+|..+.+-+++.. ++++.||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-----~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-----DEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-----cceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcce
Confidence 4678999999999998877655433 47789999999888887764332 245777777776632 56788999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
|.-...-.+.. +...+.+.+.++|||+|.+-+.+-..
T Consensus 173 I~yDTy~e~yE------------dl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 173 IYYDTYSELYE------------DLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred eEeechhhHHH------------HHHHHHHHHhhhcCCCceEEEecCcc
Confidence 99754333333 77888999999999999998766443
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00052 Score=55.99 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=100.6
Q ss_pred cchHHHHHHHHHhcC--CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 97 PLHYDMAQRMVGSVN--DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
+....++..++.-+. ++.++.+||-+|+.+|+...+++.-.+ ...+++++.|+......-.-++.. +|+--
T Consensus 56 p~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~----~G~iYaVEfs~R~~reLl~~a~~R---~Ni~P 128 (231)
T COG1889 56 PRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG----EGRIYAVEFSPRPMRELLDVAEKR---PNIIP 128 (231)
T ss_pred cchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC----CCcEEEEEecchhHHHHHHHHHhC---CCcee
Confidence 445567776665543 357889999999999999999987765 358999999999877666665543 45777
Q ss_pred EEcCCCCCC---CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE------EcCCCch---
Q 022698 175 REGDVRSLP---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV------WDLLHVP--- 242 (293)
Q Consensus 175 ~~~d~~~~~---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~------~~~~~~~--- 242 (293)
+..|+.... .--++.|+|.+.-. + ++...-+..++...||+||.+++ ++....+
T Consensus 129 IL~DA~~P~~Y~~~Ve~VDviy~DVA----Q----------p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~v 194 (231)
T COG1889 129 ILEDARKPEKYRHLVEKVDVIYQDVA----Q----------PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEV 194 (231)
T ss_pred eecccCCcHHhhhhcccccEEEEecC----C----------chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHH
Confidence 788887621 11246899987521 1 11334567788899999997665 3333332
Q ss_pred --HHHHHHHHcCCcceEEeeeeccce
Q 022698 243 --EYVRRLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 243 --~~~~~l~~~gf~~~~~~~~~~~~~ 266 (293)
+-.+.|++.+|+.++.. ++..|.
T Consensus 195 f~~ev~kL~~~~f~i~e~~-~LePye 219 (231)
T COG1889 195 FKDEVEKLEEGGFEILEVV-DLEPYE 219 (231)
T ss_pred HHHHHHHHHhcCceeeEEe-ccCCcc
Confidence 34566778888877655 445543
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00017 Score=61.27 Aligned_cols=79 Identities=16% Similarity=-0.014 Sum_probs=63.8
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc------C--CCCceEEEEcCCCCCC-CCCCc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME------G--VQEYVTAREGDVRSLP-FGDNY 188 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~------~--~~~~v~~~~~d~~~~~-~~~~~ 188 (293)
+|||+-+|+|..+..++.. +++|+++|.|+.+....+++++.. + +..+++++..|..++- -...+
T Consensus 91 ~VLD~TAGlG~Da~~las~------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~ 164 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPR 164 (250)
T ss_pred EEEECCCCccHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCC
Confidence 8999999999999999876 578999999999999999888874 2 2256889999986642 12347
Q ss_pred ccEEEecchhhhhc
Q 022698 189 FDVVVSAAFFHTVG 202 (293)
Q Consensus 189 fD~Iv~~~~~~~~~ 202 (293)
||+|...|+|.+-.
T Consensus 165 fDVVYlDPMfp~~~ 178 (250)
T PRK10742 165 PQVVYLDPMFPHKQ 178 (250)
T ss_pred CcEEEECCCCCCCc
Confidence 99999999987643
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.5e-05 Score=59.66 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=49.9
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+++|+|||.|..+..+++..+ ..+++++|+++.+.+.++++.+.++.. ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~----~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA----EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC----CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 489999999999998887654 458999999999999999999988764 48888777654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00051 Score=59.56 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=69.7
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
.+...+++.+. ..+++..+|.--|.|..+..++..++.. ++++|+|.++.+++.|++.....+ +++.+++.++.
T Consensus 10 VLl~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~---~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~ 83 (314)
T COG0275 10 VLLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDL---GRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFA 83 (314)
T ss_pred hHHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCC---CeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHH
Confidence 35566777665 4677899999999999999999998753 589999999999999999987765 67999998876
Q ss_pred CCC-----CCCCcccEEEec
Q 022698 181 SLP-----FGDNYFDVVVSA 195 (293)
Q Consensus 181 ~~~-----~~~~~fD~Iv~~ 195 (293)
++. ...+++|-|+..
T Consensus 84 ~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 84 NLAEALKELGIGKVDGILLD 103 (314)
T ss_pred HHHHHHHhcCCCceeEEEEe
Confidence 643 123466766643
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.7e-05 Score=68.71 Aligned_cols=128 Identities=16% Similarity=0.219 Sum_probs=87.6
Q ss_pred cccccCccchHHHHHHHH---HhcCC-CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q 022698 90 NFFYSAVPLHYDMAQRMV---GSVND-WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM 165 (293)
Q Consensus 90 ~f~~~~~~~~~~~~~~l~---~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~ 165 (293)
-||......+.++.-.++ ..... .....+|||.=+|+|.=++..+.+++. ..+|++-|+|+++++..++|++.
T Consensus 20 vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~---~~~v~~NDi~~~a~~~i~~N~~~ 96 (377)
T PF02005_consen 20 VFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAG---VDKVTANDISPEAVELIKRNLEL 96 (377)
T ss_dssp SS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SS---ECEEEEEES-HHHHHHHHHHHHH
T ss_pred cccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCC---CCEEEEecCCHHHHHHHHHhHhh
Confidence 355555556666655552 22211 123468999999999999999988653 35999999999999999999999
Q ss_pred cCCCC-ceEEEEcCCCCCC-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 166 EGVQE-YVTAREGDVRSLP-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 166 ~~~~~-~v~~~~~d~~~~~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|++.+ ++++...|+..+- .....||+|=..|.= .+..++..+.+.++.||.|++.
T Consensus 97 N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDPfG----------------Sp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 97 NGLEDERIEVSNMDANVLLYSRQERFDVIDLDPFG----------------SPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp CT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--SS------------------HHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCceEEEehhhHHHHhhhccccCCEEEeCCCC----------------CccHhHHHHHHHhhcCCEEEEe
Confidence 99987 7889998987642 246789999875432 5667899999999999999984
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00017 Score=63.44 Aligned_cols=93 Identities=14% Similarity=0.091 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
-+.+.+++.+. ..++..++|.=+|.|..+..+++.++ .++|+|+|.++.+++.+++++... .+++.+++.+..
T Consensus 7 Vll~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~----~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~ 79 (305)
T TIGR00006 7 VLLDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLG----TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFA 79 (305)
T ss_pred hhHHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHH
Confidence 35666777764 45677999999999999999998875 259999999999999999987654 357999999987
Q ss_pred CCC-----CCCCcccEEEecchhhh
Q 022698 181 SLP-----FGDNYFDVVVSAAFFHT 200 (293)
Q Consensus 181 ~~~-----~~~~~fD~Iv~~~~~~~ 200 (293)
++. ....++|.|+.+..+..
T Consensus 80 ~l~~~l~~~~~~~vDgIl~DLGvSS 104 (305)
T TIGR00006 80 NFFEHLDELLVTKIDGILVDLGVSS 104 (305)
T ss_pred HHHHHHHhcCCCcccEEEEeccCCH
Confidence 653 12357999998755533
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00047 Score=55.85 Aligned_cols=141 Identities=21% Similarity=0.181 Sum_probs=89.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHH----HHHHHHHH-HhcCCCCceEEEEcCCCCCCCCCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRT----TLSTLRTA-KMEGVQEYVTAREGDVRSLPFGDN 187 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~----l~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~ 187 (293)
+.++.+|+|+-.|.|.++..++...... ..|+++=..+.. .+..+.+. .+.....+++.+-.+...+. +.+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~---G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPK---GKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQ 121 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCc---eeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCC
Confidence 5788999999999999999998887654 377776544431 11111111 11111123455555554444 456
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC----------------chHHHHHHHHc
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH----------------VPEYVRRLQEL 251 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------~~~~~~~l~~~ 251 (293)
..|++..+..+|.+....-+ ......+...+++.|||||.+.+.++.- ...+.+..+++
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~-----~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaa 196 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIH-----PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAA 196 (238)
T ss_pred cccccccchhhhhhhccccC-----cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhh
Confidence 68888887777665432222 2255678999999999999999976531 23477778899
Q ss_pred CCcceEEeeee
Q 022698 252 KMEDIRVSERV 262 (293)
Q Consensus 252 gf~~~~~~~~~ 262 (293)
||+..-..+-+
T Consensus 197 GFkl~aeS~il 207 (238)
T COG4798 197 GFKLEAESEIL 207 (238)
T ss_pred cceeeeeehhh
Confidence 99865444333
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0006 Score=59.25 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=82.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc------------------------
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY------------------------ 171 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~------------------------ 171 (293)
..+||--|||.|.++..++.... ...|-+.|.-|+-...=.+..-...+.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~------~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~ 224 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF------KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPIS 224 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc------cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccccccccccccc
Confidence 45899999999999999987633 566668887776533322210000010
Q ss_pred ---------------eEEEEcCCCCCC---CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEE
Q 022698 172 ---------------VTAREGDVRSLP---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVG 233 (293)
Q Consensus 172 ---------------v~~~~~d~~~~~---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 233 (293)
.+...+|+.+.- ...+.||+|+.+..+.... +..++++.+..+|||||++
T Consensus 225 ~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~------------NileYi~tI~~iLk~GGvW 292 (369)
T KOG2798|consen 225 IPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH------------NILEYIDTIYKILKPGGVW 292 (369)
T ss_pred CccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH------------HHHHHHHHHHHhccCCcEE
Confidence 111223332210 1124699999886665554 8889999999999999998
Q ss_pred EEEcC------------------CCchHHHHHHHHcCCcceEEee
Q 022698 234 VVWDL------------------LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 234 ~~~~~------------------~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
+=.++ ...+++..++...||+.++-+.
T Consensus 293 iNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 293 INLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred EeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEeee
Confidence 75322 1245788888999999877653
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00097 Score=59.34 Aligned_cols=152 Identities=21% Similarity=0.166 Sum_probs=93.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--------
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-------- 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-------- 183 (293)
.+.++.+|||+++..|.-+..+++.+-+......+++-|.++.-+............ .+..+...|+...|
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccCc
Confidence 467899999999999999999988764321123899999999988888777654432 33444444443332
Q ss_pred -CCCCcccEEEecchhhhhc---ccc-----Ccchhh---hHHHHHHHHHHHHHcccCCcEEEEEcCCCc----hH-HHH
Q 022698 184 -FGDNYFDVVVSAAFFHTVG---KEY-----GHRTVE---AAAERMRVLGEMVRVLKPGGVGVVWDLLHV----PE-YVR 246 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~---~~~-----~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~-~~~ 246 (293)
.....||-|.|.-|...-. ..+ ++.... -..-...++.+..++||+||.++.+++... +. +.+
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~ 310 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQE 310 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHH
Confidence 1224699999975542211 000 000000 001234688888999999999999776543 33 344
Q ss_pred HHHHcC--CcceEEeeeecc
Q 022698 247 RLQELK--MEDIRVSERVTA 264 (293)
Q Consensus 247 ~l~~~g--f~~~~~~~~~~~ 264 (293)
+|++.| ++.+.+..++.+
T Consensus 311 ~L~~~~~~~~lv~~~~~lp~ 330 (375)
T KOG2198|consen 311 ALQKVGGAVELVDVSGDLPG 330 (375)
T ss_pred HHHHhcCcccceeecccccc
Confidence 454444 455555555554
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=6.6e-05 Score=58.87 Aligned_cols=140 Identities=11% Similarity=0.111 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHH-HHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC--CceEEEE
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAV-ATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ--EYVTARE 176 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l-~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~--~~v~~~~ 176 (293)
+.++-.+++.... ..+.+|||+|.|--+++-.+ +...+ ...|..+|-++.+++-.++....+..+ .++....
T Consensus 15 eala~~~l~~~n~-~rg~~ilelgggft~laglmia~~a~----~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlr 89 (201)
T KOG3201|consen 15 EALAWTILRDPNK-IRGRRILELGGGFTGLAGLMIACKAP----DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLR 89 (201)
T ss_pred HHHHHHHHhchhH-HhHHHHHHhcCchhhhhhhheeeecC----CceEEEecCCHHHHHHHHHHHhcccccccceehhhH
Confidence 3444445544332 34578999999975544333 33333 469999999999999888776655322 2233333
Q ss_pred cCCCCCC--CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc---hHHHHHHHHc
Q 022698 177 GDVRSLP--FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV---PEYVRRLQEL 251 (293)
Q Consensus 177 ~d~~~~~--~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~l~~~ 251 (293)
.+..... ....+||+|+|...+..-. ....+.+.++++|+|.|.-++..+... +.+.......
T Consensus 90 w~~~~aqsq~eq~tFDiIlaADClFfdE------------~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~ 157 (201)
T KOG3201|consen 90 WLIWGAQSQQEQHTFDIILAADCLFFDE------------HHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTV 157 (201)
T ss_pred HHHhhhHHHHhhCcccEEEeccchhHHH------------HHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhc
Confidence 3332211 2245899999987765533 567888999999999999777666544 3456666778
Q ss_pred CCcce
Q 022698 252 KMEDI 256 (293)
Q Consensus 252 gf~~~ 256 (293)
||...
T Consensus 158 gf~v~ 162 (201)
T KOG3201|consen 158 GFTVC 162 (201)
T ss_pred eeEEE
Confidence 88754
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00018 Score=63.73 Aligned_cols=88 Identities=17% Similarity=0.065 Sum_probs=62.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.++||+||++|.++..+++. +.+|++||..+- + ..+.. .++|.....|......+.+.+|.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r------G~~V~AVD~g~l----~-~~L~~---~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR------GMFVTAVDNGPM----A-QSLMD---TGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc------CCEEEEEechhc----C-HhhhC---CCCEEEEeccCcccCCCCCCCCEE
Confidence 357789999999999999888876 469999996552 1 12222 256888888887653236789999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG 230 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 230 (293)
+|.-.- .|.++.+-+.+.|..|
T Consensus 275 VcDmve----------------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVE----------------KPARVAELMAQWLVNG 296 (357)
T ss_pred EEeccc----------------CHHHHHHHHHHHHhcC
Confidence 997542 4456666677777665
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00014 Score=63.87 Aligned_cols=121 Identities=21% Similarity=0.174 Sum_probs=84.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHH-------HHHHHHHhcCCCC-ceEEEEcCCCCCC
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTL-------STLRTAKMEGVQE-YVTAREGDVRSLP 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~-------~a~~~~~~~~~~~-~v~~~~~d~~~~~ 183 (293)
...+++-|.|--.|||.+....+.. ++-|.|.||+-.++. -.+.|+++.|..+ -+.++.+|..+-+
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~F------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~ 278 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHF------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP 278 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhh------cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcc
Confidence 3567889999999999998887765 579999999998877 2456777777443 3577888888765
Q ss_pred CC-CCcccEEEecchhhhhccc---------------------cCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 FG-DNYFDVVVSAAFFHTVGKE---------------------YGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 ~~-~~~fD~Iv~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+. .-.||.|||.|||..-..- +.+....-..-....+.-.++.|..||+++++-.
T Consensus 279 ~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 279 LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 43 4579999999998543200 0111111111223466667799999999998543
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00015 Score=63.70 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+++.+. ..++..++|.--|.|..+..+++.++ +++++|+|.++.+++.+++++... .+++.++..++.+
T Consensus 8 ll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~----~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLP----NGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-T----T-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGG
T ss_pred cHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCC----CCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHH
Confidence 4555666664 46778999999999999999999887 469999999999999998876644 4679999999876
Q ss_pred CC-----C-CCCcccEEEecch
Q 022698 182 LP-----F-GDNYFDVVVSAAF 197 (293)
Q Consensus 182 ~~-----~-~~~~fD~Iv~~~~ 197 (293)
+. . ...++|-|+....
T Consensus 81 l~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 81 LDEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp HHHHHHHTTTTS-EEEEEEE-S
T ss_pred HHHHHHHccCCCccCEEEEccc
Confidence 53 2 2347888886533
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00054 Score=57.44 Aligned_cols=96 Identities=23% Similarity=0.229 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEEcCCCCCCC--CCCccc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY-VTAREGDVRSLPF--GDNYFD 190 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~-v~~~~~d~~~~~~--~~~~fD 190 (293)
.++..+||+|+.||.++-.+++.- ...|+|+|.....+..--++ .++ +.+...|++.+.. -.+..|
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g-----Ak~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG-----AKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC-----CcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHHHcccCCC
Confidence 467899999999999999988763 25999999988755433332 233 4555667766531 123689
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+++|.-.+..+ ..++..+..+++|+|.++.
T Consensus 147 ~~v~DvSFISL---------------~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 147 LIVIDVSFISL---------------KLILPALLLLLKDGGDLVL 176 (245)
T ss_pred eEEEEeehhhH---------------HHHHHHHHHhcCCCceEEE
Confidence 99998777654 4788889999999997765
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00046 Score=63.53 Aligned_cols=112 Identities=22% Similarity=0.310 Sum_probs=82.9
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecch
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAF 197 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~ 197 (293)
++|-+|||.-.+...+-+.. ...|+.+|+|+.+++.+....... .+-..+...|+..+.+++.+||+|+.-+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-----~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-----FEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIVIDKGT 123 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-----CCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEEEecCc
Confidence 89999999998776554432 368999999999998777554321 23478999999999999999999999888
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
++++-......... ......+.+++++|+|||+.+.+..
T Consensus 124 lDal~~de~a~~~~--~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 124 LDALFEDEDALLNT--AHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccccCCchhhhhh--HHhhHHHhhHHHHhccCCEEEEEEe
Confidence 87665322211111 2445678999999999999776544
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0016 Score=56.01 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=73.1
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCC--hHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRG--ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G--~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
...+.++.+.....-..+||||||-- .....+++... +.++|+-+|++|-.+..++..+..+.- .+..++++|+
T Consensus 55 Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~---P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~ 130 (267)
T PF04672_consen 55 FLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVA---PDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADL 130 (267)
T ss_dssp HHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH----TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--T
T ss_pred HHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhC---CCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCC
Confidence 44445555443223446999999963 23444555443 368999999999999988888776532 3489999999
Q ss_pred CCCC--C---------CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 180 RSLP--F---------GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 180 ~~~~--~---------~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.+.. + .-.+.=.|+.+.++|++++ .+++..+++.+...|.||..|.++..
T Consensus 131 r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D---------~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 131 RDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPD---------DDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp T-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-C---------GCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCC---------ccCHHHHHHHHHHhCCCCceEEEEec
Confidence 8732 1 1122235666788888873 23788999999999999999999543
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0016 Score=52.49 Aligned_cols=124 Identities=27% Similarity=0.342 Sum_probs=76.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc-CCCCCC--------
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-DVRSLP-------- 183 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~~~-------- 183 (293)
++|+.+|||+||..|..+....+... +...|.|+|+-.- ..-.| +.++++ |+.+..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~---p~g~v~gVDllh~--------~p~~G----a~~i~~~dvtdp~~~~ki~e~ 131 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVN---PNGMVLGVDLLHI--------EPPEG----ATIIQGNDVTDPETYRKIFEA 131 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhC---CCceEEEEeeeec--------cCCCC----cccccccccCCHHHHHHHHHh
Confidence 46789999999999999987766653 3569999998432 11112 344444 665421
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHH-------HHHHHHHcccCCcEEEE--EcCCCchHHHHHHHHcCCc
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMR-------VLGEMVRVLKPGGVGVV--WDLLHVPEYVRRLQELKME 254 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~LkpgG~l~~--~~~~~~~~~~~~l~~~gf~ 254 (293)
+++.+.|+|+|...-.... .. ..|... ++.-....++|+|.+++ ++-...+.+.+.|.+. |+
T Consensus 132 lp~r~VdvVlSDMapnaTG----vr----~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~-f~ 202 (232)
T KOG4589|consen 132 LPNRPVDVVLSDMAPNATG----VR----IRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAV-FT 202 (232)
T ss_pred CCCCcccEEEeccCCCCcC----cc----hhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHH-hh
Confidence 3567899999863322111 00 112222 23333467899999987 5555556677777555 77
Q ss_pred ceEEee
Q 022698 255 DIRVSE 260 (293)
Q Consensus 255 ~~~~~~ 260 (293)
.++..+
T Consensus 203 ~Vk~vK 208 (232)
T KOG4589|consen 203 NVKKVK 208 (232)
T ss_pred hcEeeC
Confidence 777654
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0032 Score=48.83 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
..+..+.++..+.. ++..+.+|+|+|.|.+....++... ...+|+|+++-.+..++-.+-+.+..++..|...|
T Consensus 57 tteQv~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~g~-----~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkd 130 (199)
T KOG4058|consen 57 TTEQVENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARCGL-----RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKD 130 (199)
T ss_pred cHHHHHHHHHHccC-CCCCcEEeccCCCceeehhhhhhCC-----CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhh
Confidence 34556667777653 5667899999999999988877631 36799999999999888888888888889999999
Q ss_pred CCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 179 ~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+.+..+.+ +..++....-..++ .+-.++..-+..|..++-.-+
T Consensus 131 lwK~dl~d--y~~vviFgaes~m~---------------dLe~KL~~E~p~nt~vvacRF 173 (199)
T KOG4058|consen 131 LWKVDLRD--YRNVVIFGAESVMP---------------DLEDKLRTELPANTRVVACRF 173 (199)
T ss_pred hhhccccc--cceEEEeehHHHHh---------------hhHHHHHhhCcCCCeEEEEec
Confidence 98866544 44444333322232 233445556667777665443
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00075 Score=62.48 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=85.8
Q ss_pred HHHHHHHhcCCCCC--CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 102 MAQRMVGSVNDWST--VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 102 ~~~~l~~~~~~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+...++++..+-.. ...|+=+|+|.|-+..+..+.........+++++|-+|+|+-..+. .+...+.++|.++..|+
T Consensus 352 i~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DM 430 (649)
T KOG0822|consen 352 ILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDM 430 (649)
T ss_pred HHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccc
Confidence 33444454433222 4468899999999988877665544445799999999999987775 45556678899999999
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+.++.+..+.|++|+-. +..+.+. +--.+.|.-+.+.|||+|+.+=
T Consensus 431 R~w~ap~eq~DI~VSEL-LGSFGDN---------ELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 431 RKWNAPREQADIIVSEL-LGSFGDN---------ELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred cccCCchhhccchHHHh-hccccCc---------cCCHHHHHHHHhhcCCCceEcc
Confidence 99874457899999742 2222210 0113677788899999998774
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00045 Score=63.88 Aligned_cols=134 Identities=19% Similarity=0.221 Sum_probs=80.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHH----HHHHHHHHHHhcCCCCceEEEEcCCCC-CCCCCCcccE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR----TTLSTLRTAKMEGVQEYVTAREGDVRS-LPFGDNYFDV 191 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~----~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~ 191 (293)
..|+|+.+|.|.++++|... .|+....-+. .+.. .-..|+-+ .-.|+.+ ++.=..+||+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~--------~VWVMNVVP~~~~ntL~v----IydRGLIG----~yhDWCE~fsTYPRTYDL 430 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD--------PVWVMNVVPVSGPNTLPV----IYDRGLIG----VYHDWCEAFSTYPRTYDL 430 (506)
T ss_pred eeeeeecccccHHHHHhccC--------CceEEEecccCCCCcchh----hhhcccch----hccchhhccCCCCcchhh
Confidence 46999999999999888643 3455544433 1111 11223311 1234443 2222478999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-chHHHHHHHHcCCcceEEeeeeccceecce
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH-VPEYVRRLQELKMEDIRVSERVTAFMVSSH 270 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~ 270 (293)
|.++..+.... ..-+...++-++-|+|+|||.+++-|... ..++..++.+..++. ++.....+-....+
T Consensus 431 lHA~~lfs~~~---------~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~-~~~d~e~g~~~~Ek 500 (506)
T PF03141_consen 431 LHADGLFSLYK---------DRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEV-RIHDTEDGPDGPEK 500 (506)
T ss_pred eehhhhhhhhc---------ccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceE-EEEecCCCCCCCce
Confidence 99998886654 12356788999999999999999966433 345666666777663 34443333222334
Q ss_pred eeeeec
Q 022698 271 IVSFRK 276 (293)
Q Consensus 271 ~~~~~~ 276 (293)
++.++|
T Consensus 501 iL~~~K 506 (506)
T PF03141_consen 501 ILICQK 506 (506)
T ss_pred EEEEEC
Confidence 555543
|
; GO: 0008168 methyltransferase activity |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.002 Score=53.35 Aligned_cols=105 Identities=19% Similarity=0.227 Sum_probs=57.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----C----CCC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----F----GDN 187 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~----~~~ 187 (293)
+..|+|+|.-.|.-++.++..+...+..++|+++|++.... .++..+...+.++++++++|..+.. . ...
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 46899999999999999988776655568999999954322 1222333344578999999987642 1 112
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
...+|+... -|... +....|+....++++|+.+++
T Consensus 111 ~~vlVilDs-~H~~~------------hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 111 HPVLVILDS-SHTHE------------HVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp SSEEEEESS-----S------------SHHHHHHHHHHT--TT-EEEE
T ss_pred CceEEEECC-CccHH------------HHHHHHHHhCccCCCCCEEEE
Confidence 334555321 11111 445667778899999999988
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0014 Score=58.45 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=90.5
Q ss_pred cccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC
Q 022698 90 NFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ 169 (293)
Q Consensus 90 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~ 169 (293)
-||......+.++.-.++....... ..+|+|.-+|+|.=++..+.+.+ ..+++.-|+||.+.+.+++|++.|...
T Consensus 28 VFYNP~m~~NRDlsV~~l~~~~~~~-~~~v~DalsatGiRgIRya~E~~----~~~v~lNDisp~Avelik~Nv~~N~~~ 102 (380)
T COG1867 28 VFYNPAMEFNRDLSVLVLKAFGKLL-PKRVLDALSATGIRGIRYAVETG----VVKVVLNDISPKAVELIKENVRLNSGE 102 (380)
T ss_pred ceeCchhhhccchhHHHHHHhhccC-CeEEeecccccchhHhhhhhhcC----ccEEEEccCCHHHHHHHHHHHHhcCcc
Confidence 3555555666666666666554322 56899999999999998888765 238999999999999999999998432
Q ss_pred CceEEEEcCCCCCCC-CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 170 EYVTAREGDVRSLPF-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 170 ~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+ ...+..|+..+-. ....||+|=..|.= .|.-++..+.+..+.||.+.+.
T Consensus 103 ~-~~v~n~DAN~lm~~~~~~fd~IDiDPFG----------------SPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 103 D-AEVINKDANALLHELHRAFDVIDIDPFG----------------SPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred c-ceeecchHHHHHHhcCCCccEEecCCCC----------------CCchHHHHHHHHhhcCCEEEEE
Confidence 2 4555577655321 13679988765432 3455778888889999999883
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=57.43 Aligned_cols=122 Identities=20% Similarity=0.203 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC----CCCCCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR----SLPFGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~----~~~~~~~~fD 190 (293)
.+.+|||+|.|.|.-..++-..+|.. ..++.++.|+..-+..... ..+-...+......|+. .+|. ...|+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl---~sa~ile~sp~lrkV~~tl-~~nv~t~~td~r~s~vt~dRl~lp~-ad~yt 187 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDL---KSAVILEASPALRKVGDTL-AENVSTEKTDWRASDVTEDRLSLPA-ADLYT 187 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCc---hhhhhhccCHHHHHHHHHH-HhhcccccCCCCCCccchhccCCCc-cceee
Confidence 35679999999999887777777653 3677788888644433332 22211111222233332 2221 23466
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHH
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQE 250 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~ 250 (293)
+++...=+-+.. . .......++.++.++.|||.|++++..+...+..++++
T Consensus 188 l~i~~~eLl~d~---~------ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rA 238 (484)
T COG5459 188 LAIVLDELLPDG---N------EKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRA 238 (484)
T ss_pred hhhhhhhhcccc---C------cchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHH
Confidence 655432222111 1 11334488999999999999999998877665555443
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0016 Score=53.23 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=67.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC------CCCceEEEEcCCCCC-C--CCCC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG------VQEYVTAREGDVRSL-P--FGDN 187 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~------~~~~v~~~~~d~~~~-~--~~~~ 187 (293)
-.+.|||||-|.+...|+..+| ..-+.|.+|--..-+..+++..... ...++.+...+.... | +..+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fP----dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kg 137 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFP----DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKG 137 (249)
T ss_pred ceEEeeccCccchhhhccccCc----cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhc
Confidence 4699999999999999999888 4589999988776666555544332 234566776666543 2 2233
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+.+-.+...|=-|... ......-....++.+..-+|++||.++.+.
T Consensus 138 qLskmff~fpdpHfk~----~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKA----RKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccccceeecCChhHhh----hhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 3333332222111110 000000011246777888999999998854
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0034 Score=53.29 Aligned_cols=82 Identities=20% Similarity=0.153 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|+|||||.=-++..+....+ +..++|+||+..+++...+.....++. ..+...|....+ +....|+..
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~----~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~-~~~~~DlaL 176 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAP----GATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP-PKEPADLAL 176 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSST----T-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH-TTSEESEEE
T ss_pred CCCchhhhhhccCCceehhhcccCC----CcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC-CCCCcchhh
Confidence 4467999999999888776664433 579999999999999999999988865 566677887643 456789999
Q ss_pred ecchhhhhc
Q 022698 194 SAAFFHTVG 202 (293)
Q Consensus 194 ~~~~~~~~~ 202 (293)
..-.++.+.
T Consensus 177 llK~lp~le 185 (251)
T PF07091_consen 177 LLKTLPCLE 185 (251)
T ss_dssp EET-HHHHH
T ss_pred HHHHHHHHH
Confidence 876666554
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.01 Score=51.96 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=77.6
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC--CCcccEEEec
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG--DNYFDVVVSA 195 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~Iv~~ 195 (293)
+++|+.||.|.....+.+. | ...+.++|+++.+++..++|.... +...|+.++... .+.+|+++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~----G-~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA----G-FEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHc----C-CEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhcCCCCCEEEeC
Confidence 6999999999998777644 1 246889999999998888875321 456777765422 3579999999
Q ss_pred chhhhhccccCcchhhh-HHHHHHHHHHHHHcccCCcEEEEEcCC---------CchHHHHHHHHcCCcceEEe
Q 022698 196 AFFHTVGKEYGHRTVEA-AAERMRVLGEMVRVLKPGGVGVVWDLL---------HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~---------~~~~~~~~l~~~gf~~~~~~ 259 (293)
+|......--...+..+ ......-+-++.+.++|. ++++=+.. ....+.+.|++.||......
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~ 142 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKL 142 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEE
Confidence 98765542111111111 111222223344456775 33331211 12357777888998754443
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0029 Score=57.42 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=56.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-CCCcccEEEe
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-GDNYFDVVVS 194 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Iv~ 194 (293)
..|||||+|||-++....+... -.+++++.-..|.+.|++....+|+.+++.++.-.-.+... +..+.|+++.
T Consensus 68 v~vLdigtGTGLLSmMAvraga-----D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-----DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-----CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 3699999999999877766642 37999999999999999999999999999888665444321 1233566654
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.032 Score=47.17 Aligned_cols=112 Identities=19% Similarity=0.166 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-CC-CCCCccc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-LP-FGDNYFD 190 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~fD 190 (293)
......++|+|+|+..-+..|...+..++...+++.+|+|...++...+.....-..-.+.-+++|... +. .+.+. .
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~-~ 154 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGG-R 154 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCC-e
Confidence 445678999999999999999999987776789999999999887544443332212225556666543 11 22222 2
Q ss_pred EEEe--cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 191 VVVS--AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 191 ~Iv~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
-+++ ...+..+. +.+-..++.++...|+||-.+++
T Consensus 155 Rl~~flGStlGN~t----------p~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 155 RLFVFLGSTLGNLT----------PGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEEEecccccCCC----------hHHHHHHHHHHHhcCCCcceEEE
Confidence 2222 33344444 23667899999999999998887
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0028 Score=53.77 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=55.4
Q ss_pred EEEEcCCCCC--CCCCCcccEEEecchhhhh-ccccCc--chhhhHHHHHHHHHHHHHcccCCcEEEEE-cCCCchHHHH
Q 022698 173 TAREGDVRSL--PFGDNYFDVVVSAAFFHTV-GKEYGH--RTVEAAAERMRVLGEMVRVLKPGGVGVVW-DLLHVPEYVR 246 (293)
Q Consensus 173 ~~~~~d~~~~--~~~~~~fD~Iv~~~~~~~~-~~~~~~--~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~ 246 (293)
++.++|..+. .++++++|+|+..|||..- ....+. ......+-....+.+++|+|||||.+++. +......+..
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~ 82 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMA 82 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHH
Confidence 5667777653 3678999999999999631 100010 00111112357889999999999988763 3333566777
Q ss_pred HHHHcCCcceE
Q 022698 247 RLQELKMEDIR 257 (293)
Q Consensus 247 ~l~~~gf~~~~ 257 (293)
.+++.||....
T Consensus 83 al~~~GF~l~~ 93 (227)
T PRK13699 83 AWKNAGFSVVG 93 (227)
T ss_pred HHHHCCCEEee
Confidence 88999998554
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.014 Score=49.77 Aligned_cols=108 Identities=15% Similarity=0.070 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH-----HhcCCCCceEEEEcCCCCCC---CCC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA-----KMEGVQEYVTAREGDVRSLP---FGD 186 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~-----~~~~~~~~v~~~~~d~~~~~---~~~ 186 (293)
...+|||+|+|+|-.++.++... +++|+..|+.. .+.....|. ..++....+.+...++...+ +..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-----~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~ 159 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-----GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL 159 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-----cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc
Confidence 34579999999997777666544 46899999744 344344332 22233335666666665532 112
Q ss_pred Cc-ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 187 NY-FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 187 ~~-fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
+. ||+|++..+++... .+..++.-++..|..+|.+++.....
T Consensus 160 ~~~~DlilasDvvy~~~------------~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 160 PNPFDLILASDVVYEEE------------SFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred CCcccEEEEeeeeecCC------------cchhHHHHHHHHHhcCCeEEEEEecc
Confidence 33 99999998887665 66778888888899999666544433
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0035 Score=55.13 Aligned_cols=86 Identities=12% Similarity=0.013 Sum_probs=54.0
Q ss_pred eEEEEcCCCCC--CCCCCcccEEEecchhhhhcc----ccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHH
Q 022698 172 VTAREGDVRSL--PFGDNYFDVVVSAAFFHTVGK----EYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYV 245 (293)
Q Consensus 172 v~~~~~d~~~~--~~~~~~fD~Iv~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 245 (293)
..++++|..+. .+++++||+|+++|||..... ...........-....+.++.++|||||.+++......-...
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~~~~ 88 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENMPFI 88 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhhhHH
Confidence 46788888763 255789999999999863110 001111111122357889999999999999885443333345
Q ss_pred HHHHHcCCcceE
Q 022698 246 RRLQELKMEDIR 257 (293)
Q Consensus 246 ~~l~~~gf~~~~ 257 (293)
..+.+.||....
T Consensus 89 ~~~~~~~f~~~~ 100 (284)
T PRK11524 89 DLYCRKLFTIKS 100 (284)
T ss_pred HHHHhcCcceEE
Confidence 566677876444
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0053 Score=51.16 Aligned_cols=108 Identities=27% Similarity=0.301 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhh--cCCC---cEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKK--TGSL---GRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------ 183 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~--~~~~---~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 183 (293)
.-.|++|+++..|.++..|.+++-+ .+.+ .+++++|+.+- +.. +.|--+++|+....
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M--------aPI----~GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM--------API----EGVIQLQGDITSASTAEAII 108 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC--------Ccc----CceEEeecccCCHhHHHHHH
Confidence 3468999999999999999988754 2212 24999999764 122 23677889987642
Q ss_pred --CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 184 --FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 184 --~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+...+.|+|||...-.... ....+.+...+-....+.-...+|+|||.++-
T Consensus 109 ~hfggekAdlVvcDGAPDvTG-lHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGAPDVTG-LHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHhCCCCccEEEeCCCCCccc-cccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 3456899999975432111 00111222222233455556689999999875
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.042 Score=44.18 Aligned_cols=136 Identities=15% Similarity=0.072 Sum_probs=77.4
Q ss_pred EcCCCChHHHHHHHHhhhcCCCcEEEEEe--CCHHHHH---HHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEE
Q 022698 122 IGCGRGILLNAVATQFKKTGSLGRVVGLD--CKKRTTL---STLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVV 192 (293)
Q Consensus 122 iG~G~G~~~~~l~~~~~~~~~~~~v~~vD--is~~~l~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~I 192 (293)
+|=|.=.++.+|++.+.. +..++++- -.++..+ .+..|.....-.+-.-....|+.++. ...++||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~---~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGS---ATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCC---CCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEE
Confidence 566777777778877653 23555554 3333322 23344433311111223456666654 245789999
Q ss_pred EecchhhhhccccCcchh-hhHHHHHHHHHHHHHcccCCcEEEEEcCCCch----HHHHHHHHcCCcceEEee
Q 022698 193 VSAAFFHTVGKEYGHRTV-EAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP----EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~----~~~~~l~~~gf~~~~~~~ 260 (293)
+-|.|-.....+.+.... ....=...+++.+..+|+++|.+.+.-....+ .+.++-++.||..++...
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~ 152 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVP 152 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEec
Confidence 999775431111111111 11122346889999999999999885544433 466777788988776643
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0048 Score=53.35 Aligned_cols=111 Identities=21% Similarity=0.200 Sum_probs=79.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEEcCCCCCC--CCCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--GV-QEYVTAREGDVRSLP--FGDN 187 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--~~-~~~v~~~~~d~~~~~--~~~~ 187 (293)
+...+++|=||.|.|...+..+++ +. -.++.-+|+....++..++..... +. .+++...-+|...+- ...+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~---ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~ 194 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KS---VENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKEN 194 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-cc---ccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccC
Confidence 345678999999999998888776 43 248999999999999888876543 22 257888889876532 2367
Q ss_pred cccEEEec--chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 188 YFDVVVSA--AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 188 ~fD~Iv~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+||+|+.. .|..... ..-...++..+.+.||+||+++...
T Consensus 195 ~~dVii~dssdpvgpa~----------~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPAC----------ALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred CceEEEEecCCccchHH----------HHHHHHHHHHHHHhhCCCcEEEEec
Confidence 89999963 2222111 1123467888889999999998854
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0013 Score=60.53 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=86.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNY 188 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~ 188 (293)
..++.+|||.=+++|.-++..+.+++.. .++++.|.++.++...++|.+.++..+.++....|+..+- -....
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v---~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~ 183 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGV---RQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKF 183 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcch---hhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccc
Confidence 3456789999999999999999998853 5899999999999999999999988888888888876532 22467
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
||+|=..|. . .+..+|..+.+.++.||.|++.
T Consensus 184 FDvIDLDPy-G---------------s~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 184 FDVIDLDPY-G---------------SPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred cceEecCCC-C---------------CccHHHHHHHHHhhcCCEEEEE
Confidence 999986532 1 4457888899999999999983
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0093 Score=51.44 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=51.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCC----CcEEEEEeCCHHHHHHHHHHHHhc-----CCCCceEEEEcCCCCCCCCC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGS----LGRVVGLDCKKRTTLSTLRTAKME-----GVQEYVTAREGDVRSLPFGD 186 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~----~~~v~~vDis~~~l~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~ 186 (293)
+.+|+|+|+|+|.++..++..+.+..+ ..+++.+|+|+.+.+..++++... ....++.+ ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 468999999999999999998764322 359999999999887777776542 12234555 23333322
Q ss_pred CcccEEEecchhhhhc
Q 022698 187 NYFDVVVSAAFFHTVG 202 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~ 202 (293)
..-+|++|.++..+|
T Consensus 95 -~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 -FPGFIIANELFDALP 109 (252)
T ss_dssp -CCEEEEEESSGGGS-
T ss_pred -CCEEEEEeeehhcCc
Confidence 245555665554433
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.012 Score=51.68 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM 165 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~ 165 (293)
.++.+.++.... +++..|||.-+|||..+.+..+. +.+.+|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~l------gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS--NPGDIVLDPFAGSFTTGAVAKAS------GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 467888887764 57889999999999988766554 45999999999999999999753
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.027 Score=50.10 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=78.2
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---CCCCcccEEEe
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---FGDNYFDVVVS 194 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~Iv~ 194 (293)
+++|+.||.|.+...+.+.- ...+.++|+++.+.+.-+.|.. .....|+.++. ++. .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-----~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-----FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-----EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcC-----cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEe
Confidence 68999999999998776552 2478999999998888888754 56778888764 333 5999999
Q ss_pred cchhhhhccccCcchhhhHHH-HHHHHHHHHHcccCCcEEEE--EcCCC------chHHHHHHHHcCCcceEEeeeeccc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAE-RMRVLGEMVRVLKPGGVGVV--WDLLH------VPEYVRRLQELKMEDIRVSERVTAF 265 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~--~~~~~------~~~~~~~l~~~gf~~~~~~~~~~~~ 265 (293)
.+|...+..--...+..+..+ +-.-+-++.+.++|.-.++= .+... ...+.+.|.+.||......-+-..|
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna~~y 147 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLNAADY 147 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGG
T ss_pred ccCCceEeccccccccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccccceeehhccccHhhC
Confidence 998766542211122211111 22233334456788554431 11111 2467778888998755444344334
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.012 Score=49.28 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=42.3
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHH
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLR 161 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~ 161 (293)
...++.+.++.... .++..|||.-||||..+.+..+. +.+.+|+|+++...+.|++
T Consensus 176 kP~~l~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l------~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKAST--NPGDIVLDPFAGSGTTAVAAEEL------GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHT------T-EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhhh--ccceeeehhhhccChHHHHHHHc------CCeEEEEeCCHHHHHHhcC
Confidence 44568888887774 46789999999999998776654 4589999999999988864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.092 Score=47.25 Aligned_cols=123 Identities=15% Similarity=0.041 Sum_probs=64.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhh--------c----CCCcEEEEEeCCHHHHHHHHHHHHhcC----CCCc--eEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKK--------T----GSLGRVVGLDCKKRTTLSTLRTAKMEG----VQEY--VTAR 175 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~--------~----~~~~~v~~vDis~~~l~~a~~~~~~~~----~~~~--v~~~ 175 (293)
...-+|+|+||.+|..++.+....-. . .+..+|+-.|.-.+-....-+.+.... -.++ +.-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 34568999999999999888764321 1 112578888865443332222221110 0111 2333
Q ss_pred EcCCCCCCCCCCcccEEEecchhhhhcccc-Ccch--------------------------hhhHHHHHHHHHHHHHccc
Q 022698 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEY-GHRT--------------------------VEAAAERMRVLGEMVRVLK 228 (293)
Q Consensus 176 ~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~-~~~~--------------------------~~~~~~~~~~l~~~~~~Lk 228 (293)
.+.+-+--+|+++.|+++|...+||+...| +... .....|...+|+.=++-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 455444336789999999999999988533 1110 1112344456666667899
Q ss_pred CCcEEEEE
Q 022698 229 PGGVGVVW 236 (293)
Q Consensus 229 pgG~l~~~ 236 (293)
|||++++.
T Consensus 175 ~GG~mvl~ 182 (334)
T PF03492_consen 175 PGGRMVLT 182 (334)
T ss_dssp EEEEEEEE
T ss_pred cCcEEEEE
Confidence 99999873
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.05 Score=53.69 Aligned_cols=143 Identities=16% Similarity=0.149 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhh---cCC-----CcEEEEEeCCH---HHHHHHHH-----------HHHh-----cC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKK---TGS-----LGRVVGLDCKK---RTTLSTLR-----------TAKM-----EG 167 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~---~~~-----~~~v~~vDis~---~~l~~a~~-----------~~~~-----~~ 167 (293)
+.-+|+|+|-|+|.......+...+ .++ .-+++++|..| +.+..+.+ .... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999988888766621 111 25889999654 22222221 1111 12
Q ss_pred C------CC--ceEEEEcCCCCC-CCCCCcccEEEecchhhhhccccCcchhhhHHHH----HHHHHHHHHcccCCcEEE
Q 022698 168 V------QE--YVTAREGDVRSL-PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER----MRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 168 ~------~~--~v~~~~~d~~~~-~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~LkpgG~l~ 234 (293)
+ .+ ++.+..+|+.+. +.-..+||+++..+.- +..+| .++++.+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~Fs-------------P~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFA-------------PAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCC-------------CccChhhccHHHHHHHHHHhCCCCEEE
Confidence 1 01 234556776542 2112568999975321 11122 479999999999999987
Q ss_pred EEcCCCchHHHHHHHHcCCcceEEeeeeccceecceeeeeec
Q 022698 235 VWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 235 ~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
-.. ....+++.|.++||+.- ...++..+..+..+.+
T Consensus 204 t~t--~a~~vr~~l~~~GF~v~----~~~~~g~kr~~~~~~~ 239 (662)
T PRK01747 204 TFT--SAGFVRRGLQEAGFTVR----KVKGFGRKREMLVGEL 239 (662)
T ss_pred Eee--hHHHHHHHHHHcCCeee----ecCCCchhhhhhhehh
Confidence 653 56789999999999744 2344444455666655
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.053 Score=49.46 Aligned_cols=121 Identities=17% Similarity=0.054 Sum_probs=68.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhh----h-------cCCCcEEEEEeCCHHHHHHHHHHHHhc--------C----CCCce
Q 022698 116 VKTALDIGCGRGILLNAVATQFK----K-------TGSLGRVVGLDCKKRTTLSTLRTAKME--------G----VQEYV 172 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~----~-------~~~~~~v~~vDis~~~l~~a~~~~~~~--------~----~~~~v 172 (293)
..+|+|+|||+|..+..+....- + ..+..++..-|.-.+-....-+.+... . ...+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 56899999999988766644321 1 112357777776544333222222110 0 00011
Q ss_pred EEE---EcCCCCCCCCCCcccEEEecchhhhhccccC-cc-------------------------hhhhHHHHHHHHHHH
Q 022698 173 TAR---EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYG-HR-------------------------TVEAAAERMRVLGEM 223 (293)
Q Consensus 173 ~~~---~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~-~~-------------------------~~~~~~~~~~~l~~~ 223 (293)
-|. .+.+-+--+|.++.++++|...+||+...|. .. ......|...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 1222222267899999999999999885331 11 011123455566666
Q ss_pred HHcccCCcEEEEE
Q 022698 224 VRVLKPGGVGVVW 236 (293)
Q Consensus 224 ~~~LkpgG~l~~~ 236 (293)
++-|+|||++++.
T Consensus 224 a~ELvpGG~mvl~ 236 (386)
T PLN02668 224 AQEMKRGGAMFLV 236 (386)
T ss_pred HHHhccCcEEEEE
Confidence 7889999999874
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.022 Score=50.91 Aligned_cols=96 Identities=14% Similarity=0.192 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCC--CCCCeEEEEcCCCChHHHHHHHHhhhcCC----CcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q 022698 102 MAQRMVGSVNDW--STVKTALDIGCGRGILLNAVATQFKKTGS----LGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 102 ~~~~l~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~----~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~ 175 (293)
+..++++..... +.+..++|+|+|+|.++..+++.+....| ..++.-+|+|+...+.-+++++... ..++.
T Consensus 62 la~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~--~~~~~- 138 (370)
T COG1565 62 LAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE--DLIRW- 138 (370)
T ss_pred HHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc--cchhH-
Confidence 444555444332 23457999999999999999987744332 4799999999997776666665443 11111
Q ss_pred EcCCCCCCCCCCcccEEEecchhhhhc
Q 022698 176 EGDVRSLPFGDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 176 ~~d~~~~~~~~~~fD~Iv~~~~~~~~~ 202 (293)
..+.+ ..+++-.-+||+|..+..+|
T Consensus 139 -~~~~e-~~p~~~~~i~~~NElfDAlP 163 (370)
T COG1565 139 -VEWVE-DLPKKFPGIVVSNELFDALP 163 (370)
T ss_pred -HHHHH-hccccCceEEEechhhcccc
Confidence 11111 12233356777888887766
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.073 Score=50.68 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCC-CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEEc
Q 022698 100 YDMAQRMVGSVND-WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE-YVTAREG 177 (293)
Q Consensus 100 ~~~~~~l~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~-~v~~~~~ 177 (293)
.++++.+.+.+.. ..+...+.|..||+|.+................+++.+..+.+...+..|....+... .......
T Consensus 201 ~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~ 280 (501)
T TIGR00497 201 QDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINA 280 (501)
T ss_pred HHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccC
Confidence 3455544444433 2255689999999999987654443210002479999999999999998876655432 2233334
Q ss_pred CCCCCC-C-CCCcccEEEecchhhhh-ccc--c-----------C-cchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 178 DVRSLP-F-GDNYFDVVVSAAFFHTV-GKE--Y-----------G-HRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 178 d~~~~~-~-~~~~fD~Iv~~~~~~~~-~~~--~-----------~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
|-...+ . ...+||.|++|||+... ... + + .++. ...-..++..+...|++||...+
T Consensus 281 dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 281 DTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPN--SKADLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred CcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCC--chhhHHHHHHHHHhcCCCCeEEE
Confidence 433311 1 24579999999998542 100 0 0 0111 12335678888899999997655
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0016 Score=56.31 Aligned_cols=74 Identities=19% Similarity=0.099 Sum_probs=60.2
Q ss_pred CCeEEEEcCCCChHHH-HHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 116 VKTALDIGCGRGILLN-AVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~-~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
+..|.|+-+|-|.++. .+...- ...|+|+|.+|.+++..+++++.|++..+.....+|-+.. .++...|.|..
T Consensus 195 ~eviVDLYAGIGYFTlpflV~ag-----Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~-~~~~~AdrVnL 268 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAG-----AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP-KPRLRADRVNL 268 (351)
T ss_pred cchhhhhhcccceEEeehhhccC-----ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc-Cccccchheee
Confidence 4689999999999998 555442 3599999999999999999999998877777777887663 45677888886
Q ss_pred c
Q 022698 195 A 195 (293)
Q Consensus 195 ~ 195 (293)
.
T Consensus 269 G 269 (351)
T KOG1227|consen 269 G 269 (351)
T ss_pred c
Confidence 4
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.03 Score=47.40 Aligned_cols=78 Identities=23% Similarity=0.200 Sum_probs=46.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHH---HHHhcCC-----CCceEEEEcCCCCC-CCCCC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLR---TAKMEGV-----QEYVTAREGDVRSL-PFGDN 187 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~---~~~~~~~-----~~~v~~~~~d~~~~-~~~~~ 187 (293)
.+|||.-+|-|.-+..++.. +++|+++|-||-.....+. ++..... ..+++++.+|..++ ..++.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~ 150 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDN 150 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS
T ss_pred CEEEECCCcchHHHHHHHcc------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCC
Confidence 48999999999999988754 4699999999986554443 3332221 14799999998873 34467
Q ss_pred cccEEEecchhhh
Q 022698 188 YFDVVVSAAFFHT 200 (293)
Q Consensus 188 ~fD~Iv~~~~~~~ 200 (293)
+||+|...|.|.+
T Consensus 151 s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 151 SFDVVYFDPMFPE 163 (234)
T ss_dssp --SEEEE--S---
T ss_pred CCCEEEECCCCCC
Confidence 9999999988865
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.22 Score=43.83 Aligned_cols=144 Identities=10% Similarity=0.133 Sum_probs=89.1
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC--C-----CCCCcccE
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL--P-----FGDNYFDV 191 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~-----~~~~~fD~ 191 (293)
=+|||+|.-++--.+-.... +....++|+.......|..|...+++...+.+++....+- . .++..||.
T Consensus 106 GiDIgtgasci~~llg~rq~----n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydF 181 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQN----NWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDF 181 (419)
T ss_pred eeeccCchhhhHHhhhchhc----cceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeE
Confidence 37999888776543332222 4789999999999999999999999888787777644221 0 12345999
Q ss_pred EEecchhhhhcccc-------------------CcchhhhHHHHHHHHHHHH--H-cccCCcEEEEE---cCCCchHHHH
Q 022698 192 VVSAAFFHTVGKEY-------------------GHRTVEAAAERMRVLGEMV--R-VLKPGGVGVVW---DLLHVPEYVR 246 (293)
Q Consensus 192 Iv~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~--~-~LkpgG~l~~~---~~~~~~~~~~ 246 (293)
+.||||+..-..|. +...+...-.-..+..++. + +|+.+=++|-. --...+.+..
T Consensus 182 cMcNPPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~eggev~fvnRiitds~~lr~~IrwYT~MlGKKsslk~l~~ 261 (419)
T KOG2912|consen 182 CMCNPPFFENQLEAKGNNSRSPRRTPPSSVCTGGSQEFVSEGGEVSFVNRIITDSFVLRKRIRWYTCMLGKKSSLKPLIS 261 (419)
T ss_pred EecCCchhhchhhhccccccCCCCCCcccccccchhHHHhhccHHHHHHHHHHHHHHhhhcceEEeeecccccccHHHHH
Confidence 99999985442111 1111111111223333333 1 23444344331 1134567889
Q ss_pred HHHHcCCcceEEeeeeccce
Q 022698 247 RLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 247 ~l~~~gf~~~~~~~~~~~~~ 266 (293)
.|++.|-..+.+.+...|..
T Consensus 262 kL~e~gv~kv~itel~qGkT 281 (419)
T KOG2912|consen 262 KLREQGVTKVKITELVQGKT 281 (419)
T ss_pred HHHHcCCceEEEEEeecccc
Confidence 99999988888888877754
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.055 Score=48.37 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=61.5
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC-CCCCCCCCCccc
Q 022698 113 WSTVKTALDIGCG-RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD-VRSLPFGDNYFD 190 (293)
Q Consensus 113 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~fD 190 (293)
..|+.+|+=+|+| .|..+..+++.+ +++|+++|.|++.++.|++.-. ..++... ......-.+.||
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~-----ga~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM-----GAEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIAD 231 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-----CCeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCc
Confidence 5678888888887 244444444433 3799999999998887776622 2334332 111111123499
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
+|+..-+ ...+....+.|++||.++++...
T Consensus 232 ~ii~tv~-------------------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG-------------------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEEECCC-------------------hhhHHHHHHHHhcCCEEEEECCC
Confidence 9998644 23445567799999999986654
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0031 Score=49.30 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=39.5
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
...++.+++.|+|.+..++.|+. -+....+++++++.|||||+|-+
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt----------~~Eg~~alkechr~Lrp~G~Lri 84 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLT----------YDEGTSALKECHRFLRPGGKLRI 84 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHh----------HHHHHHHHHHHHHHhCcCcEEEE
Confidence 34467889999999999999987 34677899999999999999987
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.036 Score=47.01 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
.++.+.++.... .++..|||.-||+|..+.+..+. +.+.+|+|+++...+.+.++....
T Consensus 150 ~~l~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~------~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 150 VTSLQPLIESFT--HPNAIVLDPFAGSGSTCVAALQS------GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 457777776654 46779999999999998776654 458999999999999998887653
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.057 Score=52.11 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=56.3
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH-HhcCC-------CCceEEEEcCCCCCCCCC---
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA-KMEGV-------QEYVTAREGDVRSLPFGD--- 186 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~-~~~~~-------~~~v~~~~~d~~~~~~~~--- 186 (293)
.|+=+|+|-|-+....++.....+-..+|+++|-++.+......+. ....+ .++|+++..|++.+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999998888877766555679999999977554444432 22233 346999999999874221
Q ss_pred --------CcccEEEe
Q 022698 187 --------NYFDVVVS 194 (293)
Q Consensus 187 --------~~fD~Iv~ 194 (293)
+++|+|||
T Consensus 783 s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS 798 (1072)
T ss_pred cccccccccccceehH
Confidence 37999997
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.04 Score=47.39 Aligned_cols=130 Identities=19% Similarity=0.176 Sum_probs=87.9
Q ss_pred CCeEEEEcCCCChHHHHHH-HHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC---CCcccE
Q 022698 116 VKTALDIGCGRGILLNAVA-TQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG---DNYFDV 191 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~-~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~ 191 (293)
++.|+=+| -.--.+++++ ..+| .++..+||++..+....+.++..|. ++++....|+++ |++ .++||+
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mp-----k~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~-plpe~~~~kFDv 224 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMP-----KRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRN-PLPEDLKRKFDV 224 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCC-----ceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcc-cChHHHHhhCCe
Confidence 45688888 3333333322 1223 5999999999999999999999887 458888999988 444 378999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC---cEEEEEcCC-Cc---hHHHH-HHHHcCCcceEEeeeec
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG---GVGVVWDLL-HV---PEYVR-RLQELKMEDIRVSERVT 263 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~-~~---~~~~~-~l~~~gf~~~~~~~~~~ 263 (293)
++..||.-.- ....++.+=...||.- |.+.+.-.. +. -++.+ ++.+.||....++.++.
T Consensus 225 fiTDPpeTi~-------------alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITdiirnFN 291 (354)
T COG1568 225 FITDPPETIK-------------ALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITDIIRNFN 291 (354)
T ss_pred eecCchhhHH-------------HHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHhhhhhhh
Confidence 9998875432 5667777777788876 566663221 22 23444 56678887766666555
Q ss_pred cce
Q 022698 264 AFM 266 (293)
Q Consensus 264 ~~~ 266 (293)
.++
T Consensus 292 ~Y~ 294 (354)
T COG1568 292 EYV 294 (354)
T ss_pred ccc
Confidence 543
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.059 Score=45.43 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHhcC--CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 97 PLHYDMAQRMVGSVN--DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
+....++..++.-+. ++.++.+||-+|+++|....++..-... ..-|+++|.|+..=.....-++.. .++--
T Consensus 136 PfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGp---eG~VYAVEfs~rsGRdL~nmAkkR---tNiiP 209 (317)
T KOG1596|consen 136 PFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGP---EGCVYAVEFSHRSGRDLINMAKKR---TNIIP 209 (317)
T ss_pred hHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCC---CceEEEEEecccchHHHHHHhhcc---CCcee
Confidence 344556666654433 3578899999999999998887766543 468999999987544443333322 34556
Q ss_pred EEcCCCCCC---CCCCcccEEEecchhhhhccccCcchhhhHHHH-HHHHHHHHHcccCCcEEEE
Q 022698 175 REGDVRSLP---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER-MRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 175 ~~~d~~~~~---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~ 235 (293)
+.-|+.... ..-+-.|+|++.-+- + +. ..+.-++...||+||.+++
T Consensus 210 IiEDArhP~KYRmlVgmVDvIFaDvaq---p------------dq~RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596|consen 210 IIEDARHPAKYRMLVGMVDVIFADVAQ---P------------DQARIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred eeccCCCchheeeeeeeEEEEeccCCC---c------------hhhhhhhhhhhhhhccCCeEEE
Confidence 667776521 122458888875221 0 22 2344456778999999887
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.0082 Score=44.29 Aligned_cols=42 Identities=19% Similarity=0.463 Sum_probs=31.0
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+||+|+|..+.-++.-..| ++....+++++++.|+|||.|++
T Consensus 1 ~yDvilclSVtkWIHLn~G------D~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWG------DEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHH------HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCc------CHHHHHHHHHHHHhhCCCCEEEE
Confidence 4899999888655542222 23567899999999999999998
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.35 Score=41.51 Aligned_cols=137 Identities=16% Similarity=0.070 Sum_probs=75.8
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcC-CCcEEEEEeCCH--------------------------HHHH
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTG-SLGRVVGLDCKK--------------------------RTTL 157 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-~~~~v~~vDis~--------------------------~~l~ 157 (293)
.+++.+....-++.|+|.||-.|..++.++..+...+ ...++++.|.=+ ..++
T Consensus 64 ~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e 143 (248)
T PF05711_consen 64 QAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLE 143 (248)
T ss_dssp HHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHH
T ss_pred HHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHH
Confidence 3444443223456899999999988876665553322 235788887321 1345
Q ss_pred HHHHHHHhcCC-CCceEEEEcCCCC-CC-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 158 STLRTAKMEGV-QEYVTAREGDVRS-LP-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 158 ~a~~~~~~~~~-~~~v~~~~~d~~~-~~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
..++|+...++ .+++.++.+.+.+ +| .+..++-++....-++ . .....|+.++..|.|||+++
T Consensus 144 ~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--e------------sT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 144 EVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--E------------STKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp HHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--H------------HHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccch--H------------HHHHHHHHHHhhcCCCeEEE
Confidence 55566655553 3579999999864 33 1223343333332111 1 44678899999999999999
Q ss_pred EEcCCC---chHHHHHHHHcCCcc
Q 022698 235 VWDLLH---VPEYVRRLQELKMED 255 (293)
Q Consensus 235 ~~~~~~---~~~~~~~l~~~gf~~ 255 (293)
+-++.. ...+.+.+.+.|...
T Consensus 210 ~DDY~~~gcr~AvdeF~~~~gi~~ 233 (248)
T PF05711_consen 210 FDDYGHPGCRKAVDEFRAEHGITD 233 (248)
T ss_dssp ESSTTTHHHHHHHHHHHHHTT--S
T ss_pred EeCCCChHHHHHHHHHHHHcCCCC
Confidence 966655 223556666777653
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.1 Score=39.58 Aligned_cols=72 Identities=11% Similarity=-0.028 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+++|+|||++.|..++..+..- ..+|++++.++...+..+++.+.+.+-++.. ....+ +-.-+.||+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-----AK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~eW---~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-----ASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKGEW---NGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-----ccEEEEeccCHHHHHHHHHHhhhheeeecee-ecccc---cccCCCcceEEE
Confidence 46799999999999998887653 2599999999999999998887765422221 11122 212356888775
Q ss_pred c
Q 022698 195 A 195 (293)
Q Consensus 195 ~ 195 (293)
.
T Consensus 99 D 99 (156)
T PHA01634 99 D 99 (156)
T ss_pred E
Confidence 3
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.19 Score=47.73 Aligned_cols=100 Identities=22% Similarity=0.270 Sum_probs=62.9
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-----------
Q 022698 114 STVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS----------- 181 (293)
Q Consensus 114 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~----------- 181 (293)
.++.+|+=+|+|. |..++..++.+ +++|+++|.+++.++.+++. |. ++...|..+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-----GA~V~a~D~~~~rle~aesl----GA----~~v~i~~~e~~~~~~gya~~ 229 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-----GAIVRAFDTRPEVAEQVESM----GA----EFLELDFEEEGGSGDGYAKV 229 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHc----CC----eEEEeccccccccccchhhh
Confidence 4678999999998 55555555544 36899999999987777653 32 222111111
Q ss_pred CC----------CCC--CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 182 LP----------FGD--NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 182 ~~----------~~~--~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.. +.+ ..+|+|+........+ .+..+.+++.+.+||||.++.+..
T Consensus 230 ~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~------------aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 230 MSEEFIKAEMALFAEQAKEVDIIITTALIPGKP------------APKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cchhHHHHHHHHHHhccCCCCEEEECCCCCccc------------CcchHHHHHHHhcCCCCEEEEEcc
Confidence 00 011 3589999764432221 233445888999999999887654
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.39 Score=40.81 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
+..+..++.+.+.+++.+ |..-|||--++..+.+.- -++.++|+.|+-....++++.. ..++.+.+.|..
T Consensus 75 a~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~q------DRl~l~ELHp~D~~~L~~~f~~---d~~vrv~~~DG~ 144 (279)
T COG2961 75 AELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLREQ------DRLVLTELHPSDAPLLRNNFAG---DRRVRVLRGDGF 144 (279)
T ss_pred HHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcchh------ceeeeeecCccHHHHHHHHhCC---CcceEEEecCcH
Confidence 344445555555566655 899999998888777652 3899999999988888888773 256899999975
Q ss_pred C-----CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHccc--CCcEEEEEc-CCCch---HHHHHHH
Q 022698 181 S-----LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLK--PGGVGVVWD-LLHVP---EYVRRLQ 249 (293)
Q Consensus 181 ~-----~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~-~~~~~---~~~~~l~ 249 (293)
. +| +.++=-+|+..|||+.-. +...+++.+.+.++ ++|...++- ..... .+.+.++
T Consensus 145 ~~l~a~LP-P~erRglVLIDPPfE~~~------------eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~ 211 (279)
T COG2961 145 LALKAHLP-PKERRGLVLIDPPFELKD------------EYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALE 211 (279)
T ss_pred HHHhhhCC-CCCcceEEEeCCCccccc------------HHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHh
Confidence 4 23 344568999999998765 66666666666555 467766643 33334 4555555
Q ss_pred HcCCc
Q 022698 250 ELKME 254 (293)
Q Consensus 250 ~~gf~ 254 (293)
+.|..
T Consensus 212 ~~~i~ 216 (279)
T COG2961 212 ALGIR 216 (279)
T ss_pred hcCcc
Confidence 66653
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.71 Score=36.90 Aligned_cols=115 Identities=15% Similarity=0.062 Sum_probs=67.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---CCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---GDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---~~~~fD 190 (293)
+..+|+-|||=+-... +.+ ...+..+++..|++.. .+..+ +. .|..-|..... + -.++||
T Consensus 25 ~~~~iaclstPsl~~~--l~~---~~~~~~~~~Lle~D~R--------F~~~~--~~-~F~fyD~~~p~~~~~~l~~~~d 88 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEA--LKK---ESKPRIQSFLLEYDRR--------FEQFG--GD-EFVFYDYNEPEELPEELKGKFD 88 (162)
T ss_pred CCCEEEEEeCcHHHHH--HHh---hcCCCccEEEEeecch--------HHhcC--Cc-ceEECCCCChhhhhhhcCCCce
Confidence 4578999998653332 222 1122468999999765 33322 22 46666765521 1 147899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEe
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
+|++.||+-.-+ ........+.-++++++.++++.....+++...+- |+......
T Consensus 89 ~vv~DPPFl~~e------------c~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ll--~~~~~~f~ 143 (162)
T PF10237_consen 89 VVVIDPPFLSEE------------CLTKTAETIRLLLKPGGKIILCTGEEMEELIKKLL--GLRMCDFQ 143 (162)
T ss_pred EEEECCCCCCHH------------HHHHHHHHHHHHhCccceEEEecHHHHHHHHHHHh--CeeEEeEE
Confidence 999999993322 44556666666778888888866433333332222 55544443
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.052 Score=41.39 Aligned_cols=91 Identities=25% Similarity=0.313 Sum_probs=54.0
Q ss_pred eEEEEcCCCCC-CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHH
Q 022698 172 VTAREGDVRSL-PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQE 250 (293)
Q Consensus 172 v~~~~~d~~~~-~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~ 250 (293)
+.+..+|+.+. +--...||+|+..+.--...++. =-.++++++.++++|||.+..+. ....+++.|.+
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPel---------Ws~e~~~~l~~~~~~~~~l~Tys--~a~~Vr~~L~~ 101 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPEL---------WSEELFKKLARLSKPGGTLATYS--SAGAVRRALQQ 101 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGG---------SSHHHHHHHHHHEEEEEEEEES----BHHHHHHHHH
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCCCcCCccc---------CCHHHHHHHHHHhCCCcEEEEee--chHHHHHHHHH
Confidence 56667776542 21136789998753211110000 01479999999999999876644 45779999999
Q ss_pred cCCcceEEeeeeccceecceeeeeecC
Q 022698 251 LKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 251 ~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
+||.+- ...++..+..++.+.+|
T Consensus 102 aGF~v~----~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 102 AGFEVE----KVPGFGRKREMLRAVKP 124 (124)
T ss_dssp CTEEEE----EEE-STTSSEEEEEEC-
T ss_pred cCCEEE----EcCCCCCcchheEEEcC
Confidence 999843 33455556678877764
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.25 Score=44.07 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=74.2
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-CCCcccEEEecch
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-GDNYFDVVVSAAF 197 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~ 197 (293)
|+|+.||.|.+..-+.+. | -.-+.++|+++.+.+.-+.|... .+...|+.++.. .-..+|+++..+|
T Consensus 1 vidLF~G~GG~~~Gl~~a----G-~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA----G-FKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc----C-CeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEecCC
Confidence 689999999998777543 1 13466899999988888877532 234567766532 1235899999988
Q ss_pred hhhhccccCcchhhh-HHHHHHHHHHHHHcccCCcEEEEEcCC---------CchHHHHHHHHcCCcceEE
Q 022698 198 FHTVGKEYGHRTVEA-AAERMRVLGEMVRVLKPGGVGVVWDLL---------HVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~---------~~~~~~~~l~~~gf~~~~~ 258 (293)
.......-...+..+ ...+..-+-++.+.++|. .+++=++. ....+...|++.||.....
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~ 138 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYK 138 (315)
T ss_pred CcccchhcccCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEE
Confidence 766553211122211 112222233344556775 33331211 1245677788899975433
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.23 Score=44.56 Aligned_cols=127 Identities=14% Similarity=0.090 Sum_probs=80.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC---CCcccEE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG---DNYFDVV 192 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~I 192 (293)
..+++|+.||.|.+..-+...- -.-+.++|+++.+++.-+.|... ..+...|+.+.... ...+|++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-----f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~Dvl 71 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-----FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVL 71 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-----CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEE
Confidence 3579999999999987665442 24788999999988887777543 34556676654311 1179999
Q ss_pred EecchhhhhccccCcchhhhHH-HHHHHHHHHHHcccCCcEEEEEcC--------CCchHHHHHHHHcCCc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAA-ERMRVLGEMVRVLKPGGVGVVWDL--------LHVPEYVRRLQELKME 254 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~--------~~~~~~~~~l~~~gf~ 254 (293)
+..+|...+..--...+..+.. .+.--+.++...++| -.+++=++ .....+.+.|++.||.
T Consensus 72 igGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 72 IGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred EeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 9999987665321112222111 122345556677888 33443121 1235688888999996
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.47 Score=43.47 Aligned_cols=115 Identities=21% Similarity=0.277 Sum_probs=65.4
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC-CCC-C-CC-CC
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD-VRS-L-PF-GD 186 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d-~~~-~-~~-~~ 186 (293)
...++.+||..|+|. |..+..+++... ..+++++|.+++.++.+++.. +. ..+.....+ ... + .. ..
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g----~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~ 252 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLG----AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGG 252 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC----CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCC
Confidence 456678999999877 777777776643 136999999999888777642 11 111111111 100 0 11 22
Q ss_pred CcccEEEecchhh-------hhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 187 NYFDVVVSAAFFH-------TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 187 ~~fD~Iv~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
..+|+|+..-.-. .+. . ..+....+....+.++.+.++++|.++.+..
T Consensus 253 ~~~D~vld~vg~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 253 RGPDVCIDAVGMEAHGSPLHKAE---Q-ALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCEEEECCCCccccccccccc---c-cccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 3589998742110 000 0 0000011345577888999999999988653
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.16 Score=46.07 Aligned_cols=100 Identities=23% Similarity=0.247 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc-CCCC--CCCCC-Ccc
Q 022698 115 TVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-DVRS--LPFGD-NYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~--~~~~~-~~f 189 (293)
++.+|+=+|||+ |..+..+++.+. ..+|+++|.++.-++.|++.....- +..... +... ..... ..+
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G----a~~Viv~d~~~~Rl~~A~~~~g~~~----~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG----ASVVIVVDRSPERLELAKEAGGADV----VVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC----CceEEEeCCCHHHHHHHHHhCCCeE----eecCccccHHHHHHHHhCCCCC
Confidence 344899999998 666666666654 4699999999999998887432210 111111 1100 01112 259
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
|+++-... . ...+..+.+.++|||.+.++....
T Consensus 240 D~vie~~G---~---------------~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 240 DVVIEAVG---S---------------PPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CEEEECCC---C---------------HHHHHHHHHHhcCCCEEEEEeccC
Confidence 99996433 1 236778888999999999876553
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.21 Score=44.88 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+||=.|+ |.++....+.....| ..+|+++|.+++.++.+++ .|...-+.....+..+.....+.+|+|+
T Consensus 168 ~~g~~VlV~G~--G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 168 LQGKRVFVSGV--GPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 35678888886 455544443333322 2379999999997776654 2321101111111111111123589888
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.... . ...+..+.+.|++||.++.+..
T Consensus 241 d~~G-----------------~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 241 EVSG-----------------H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ECCC-----------------C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 6421 1 1345667788999999998764
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.31 Score=42.90 Aligned_cols=117 Identities=20% Similarity=0.134 Sum_probs=73.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhh----hc------------CCCcEEEEEeCCHH--HHHHHHHHHHhc-----------
Q 022698 116 VKTALDIGCGRGILLNAVATQFK----KT------------GSLGRVVGLDCKKR--TTLSTLRTAKME----------- 166 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~----~~------------~~~~~v~~vDis~~--~l~~a~~~~~~~----------- 166 (293)
..+||.||.|.|.-..+++..+. .. .+...++.+||.+= .+..........
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 36899999999999999988871 10 11248999999763 333333333222
Q ss_pred -----CCCCceEEEEcCCCCCCCCC-------CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 167 -----GVQEYVTAREGDVRSLPFGD-------NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 167 -----~~~~~v~~~~~d~~~~~~~~-------~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
.-.-++.|.+.|+..+..++ ...|+|.....++.+=-+ .......++.++-..++||..|+
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~-------s~~kTt~FLl~Lt~~~~~GslLL 239 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST-------SISKTTKFLLRLTDICPPGSLLL 239 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc-------ChHHHHHHHHHHHhhcCCCcEEE
Confidence 00124789999998764211 135666554444322100 01245679999999999999999
Q ss_pred EEcCC
Q 022698 235 VWDLL 239 (293)
Q Consensus 235 ~~~~~ 239 (293)
|++..
T Consensus 240 VvDSp 244 (315)
T PF11312_consen 240 VVDSP 244 (315)
T ss_pred EEcCC
Confidence 98754
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.3 Score=32.80 Aligned_cols=106 Identities=22% Similarity=0.157 Sum_probs=69.0
Q ss_pred CCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEEEecchhh
Q 022698 124 CGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVVVSAAFFH 199 (293)
Q Consensus 124 ~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~Iv~~~~~~ 199 (293)
||.|.++..+++.+.+. +.+++.+|.+++..+.++.. + +.++.+|..+.. ..-.+.|.|++...=
T Consensus 4 ~G~g~~~~~i~~~L~~~--~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~- 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEG--GIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVILTDD- 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEEESSS-
T ss_pred EcCCHHHHHHHHHHHhC--CCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEEccCC-
Confidence 67789999999998873 35899999999976655433 3 578889987632 122468888875321
Q ss_pred hhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 200 TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
+.....+....+.+.|...++..- ..++..+.|++.|...+
T Consensus 73 --------------d~~n~~~~~~~r~~~~~~~ii~~~--~~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 73 --------------DEENLLIALLARELNPDIRIIARV--NDPENAELLRQAGADHV 113 (116)
T ss_dssp --------------HHHHHHHHHHHHHHTTTSEEEEEE--SSHHHHHHHHHTT-SEE
T ss_pred --------------HHHHHHHHHHHHHHCCCCeEEEEE--CCHHHHHHHHHCCcCEE
Confidence 122234444556677777766532 35778888888887643
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.97 Score=37.65 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=53.6
Q ss_pred CCCCeEEEEcCCCCh--HHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-CCCCCCccc
Q 022698 114 STVKTALDIGCGRGI--LLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-LPFGDNYFD 190 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~--~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD 190 (293)
.....++++.|+.|. .++.|+..-... +.+++++-..+..+...++.....+..+.++|+.++..+ +-..-...|
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~T--gGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iD 117 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQT--GGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGID 117 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhc--CCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCC
Confidence 445679999776554 344444443333 469999999999888888888877776667998887532 211123578
Q ss_pred EEEec
Q 022698 191 VVVSA 195 (293)
Q Consensus 191 ~Iv~~ 195 (293)
+++..
T Consensus 118 F~vVD 122 (218)
T PF07279_consen 118 FVVVD 122 (218)
T ss_pred EEEEe
Confidence 88864
|
The function of this family is unknown. |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.3 Score=38.07 Aligned_cols=78 Identities=17% Similarity=0.092 Sum_probs=52.4
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.|+++ +.++..+++.+.+.| .+|+.++.++...+.+.+..+..+ .+.++.+|+.+.. +
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G--~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALG--AELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcC--CEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHH
Confidence 56899999888 489999999887764 588888988654433333332222 2456778887532 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|..+
T Consensus 85 ~~g~ld~lv~nAg~ 98 (258)
T PRK07533 85 EWGRLDFLLHSIAF 98 (258)
T ss_pred HcCCCCEEEEcCcc
Confidence 12578999998654
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.043 Score=40.32 Aligned_cols=32 Identities=25% Similarity=0.547 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK 152 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis 152 (293)
+....+|||||+|-+...|.++ +-.-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E------Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE------GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC------CCCccccccc
Confidence 4557999999999988777765 4577888864
|
; GO: 0008168 methyltransferase activity |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.44 Score=38.90 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=71.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-------CCCc
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-------GDNY 188 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~ 188 (293)
+..|+|+|.-.|..++..+...-+.|...+|+++||+-..+..+... .+++.|+.++-.+... ..+.
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 45799999999999988888766655568999999987654433322 2559999999876431 1232
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
--+.+|-..-|+.. .....++-..++|..|-.+++-
T Consensus 144 ~kIfvilDsdHs~~------------hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 144 PKIFVILDSDHSME------------HVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred CcEEEEecCCchHH------------HHHHHHHHhhhHhhcCceEEEe
Confidence 33444444445544 5567778888999999998883
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.26 Score=43.56 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=64.5
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE-EcC-CCCC------
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR-EGD-VRSL------ 182 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~-~~d-~~~~------ 182 (293)
....+.+||=+|+|. |-.+...++.+. ..+|+.+|+++..++.|++ + |... +... ..+ ..++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~G----A~~VVi~d~~~~Rle~Ak~-~---Ga~~-~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMG----ASDVVITDLVANRLELAKK-F---GATV-TDPSSHKSSPQELAELVEK 236 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcC----CCcEEEeecCHHHHHHHHH-h---CCeE-EeeccccccHHHHHHHHHh
Confidence 356788999999998 666666676665 4699999999999999988 3 3211 1111 111 0110
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
......+|+.+...-.+ ..++.....+++||.+++++.
T Consensus 237 ~~g~~~~d~~~dCsG~~------------------~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCSGAE------------------VTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred hccccCCCeEEEccCch------------------HHHHHHHHHhccCCEEEEecc
Confidence 02234588888654332 344556778999999887654
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.091 Score=45.45 Aligned_cols=104 Identities=16% Similarity=0.065 Sum_probs=59.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHH-------HHHHHH--hcCCCCceEEEEc---CCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLS-------TLRTAK--MEGVQEYVTAREG---DVRS 181 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~-------a~~~~~--~~~~~~~v~~~~~---d~~~ 181 (293)
..+++|||+|||+|-..+...... ...+...|.|...++. +.-++. ......-...... |+.-
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-----~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~ 189 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-----AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVF 189 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-----cceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchh
Confidence 457899999999998887776552 2578888888776621 111111 1110011222233 2211
Q ss_pred CCCCC-CcccEEEecchhhhhccccCcchhhhHHHHHHH-HHHHHHcccCCcEEEE
Q 022698 182 LPFGD-NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRV-LGEMVRVLKPGGVGVV 235 (293)
Q Consensus 182 ~~~~~-~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~LkpgG~l~~ 235 (293)
. ... .+||+|.+...++... ....+ ......+++++|.+++
T Consensus 190 ~-~t~~~~ydlIlsSetiy~~~------------~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 190 N-HTERTHYDLILSSETIYSID------------SLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred h-hccccchhhhhhhhhhhCcc------------hhhhhHhhhhhhcCCccchhhh
Confidence 1 111 2789998887766554 34444 4445567888998876
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.043 Score=49.91 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEEcCCCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY-VTAREGDVRS 181 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~-v~~~~~d~~~ 181 (293)
.+++..|.|+.||.|-+++.++.. +++|++-|.++++++..+.|++.+.+.+. ++.+..|+.+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK------~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK------GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc------CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 357789999999999999888776 58999999999999999999999988765 8888887754
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.09 Score=48.80 Aligned_cols=115 Identities=14% Similarity=0.049 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-------CCCCC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-------PFGDN 187 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~ 187 (293)
....+|-+|-|+|.+...+...+| .++++++++.|.+++.+..++....- .+..+.-.|..+. .-.+.
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p----~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~ 369 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLP----KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDI 369 (482)
T ss_pred ccCcEEEEecCCCccccceeeecC----ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhcccccc
Confidence 345789999999999999988887 46999999999999999998754431 1234444444321 01356
Q ss_pred cccEEEec---chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 188 YFDVVVSA---AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 188 ~fD~Iv~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
.||++... ...+.+. .+ .+..-...++..+...|.|.|.+++.-...
T Consensus 370 ~~dvl~~dvds~d~~g~~-----~p-p~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 370 CPDVLMVDVDSKDSHGMQ-----CP-PPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred CCcEEEEECCCCCcccCc-----CC-chHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 79999863 1111111 00 011123467888889999999998844333
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=3.2 Score=35.66 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=53.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+... +.+|++++.+++.++...+.....+ .++.++..|+.+.. + .
T Consensus 9 ~k~ilItG-asggIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 9 GKNVVVVG-GTSGINLGIAQAFARA--GANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 55788777 5778888888888765 4689999998876665544444332 34678888987532 1 1
Q ss_pred CCcccEEEecch
Q 022698 186 DNYFDVVVSAAF 197 (293)
Q Consensus 186 ~~~fD~Iv~~~~ 197 (293)
.+++|+++++..
T Consensus 84 ~~~iD~vi~~ag 95 (264)
T PRK07576 84 FGPIDVLVSGAA 95 (264)
T ss_pred cCCCCEEEECCC
Confidence 246899998754
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=1 Score=39.10 Aligned_cols=74 Identities=22% Similarity=0.134 Sum_probs=50.4
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----CCCc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----GDNY 188 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~~~~ 188 (293)
.+|=-|+ |.++..+++.+. . +.+|+.+|.++..++...+..+..+ .++.++.+|+.+.. + ..++
T Consensus 4 ~~lItGa--~gIG~~la~~l~-~--G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~ 76 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVG-A--GKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGP 76 (275)
T ss_pred EEEEECC--ChHHHHHHHHHh-C--CCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCC
Confidence 4554554 579999999885 3 4799999998877665555444333 34778889987632 1 1256
Q ss_pred ccEEEecchh
Q 022698 189 FDVVVSAAFF 198 (293)
Q Consensus 189 fD~Iv~~~~~ 198 (293)
.|+++.|...
T Consensus 77 id~li~nAG~ 86 (275)
T PRK06940 77 VTGLVHTAGV 86 (275)
T ss_pred CCEEEECCCc
Confidence 8999988654
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.23 Score=45.37 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=59.1
Q ss_pred CceEEEEcCCCCCC--CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHH
Q 022698 170 EYVTAREGDVRSLP--FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRR 247 (293)
Q Consensus 170 ~~v~~~~~d~~~~~--~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 247 (293)
++++++..++.+.. .+++++|.++......+++ .....+.++++.+.++|||++++-+....+.+...
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~----------~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~~~~~~ 344 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMD----------PEQLNEEWQELARTARPGARVLWRSAAVPPWYPGR 344 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCC----------HHHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCccc
Confidence 77999999987742 3578999999999999988 34778899999999999999999766555554444
Q ss_pred H--HHcCCcc
Q 022698 248 L--QELKMED 255 (293)
Q Consensus 248 l--~~~gf~~ 255 (293)
+ .+.+|..
T Consensus 345 ~~~~~~~~~~ 354 (380)
T PF11899_consen 345 FLLERWGFDE 354 (380)
T ss_pred ccHHhhcccH
Confidence 4 5555553
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.67 E-value=6.6 Score=34.50 Aligned_cols=80 Identities=25% Similarity=0.259 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------C
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------F 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 184 (293)
.++.||==|+|+| +++.++.++.++| +++..+|++++..+...+..+..| ++....+|+.+.. -
T Consensus 37 ~g~~vLITGgg~G-lGr~ialefa~rg--~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 37 SGEIVLITGGGSG-LGRLIALEFAKRG--AKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred cCCEEEEeCCCch-HHHHHHHHHHHhC--CeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 4567888887776 6788888888774 599999999998887777777665 4889999997642 1
Q ss_pred CCCcccEEEecchhhh
Q 022698 185 GDNYFDVVVSAAFFHT 200 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~ 200 (293)
.-+..|++|.|..+-+
T Consensus 111 e~G~V~ILVNNAGI~~ 126 (300)
T KOG1201|consen 111 EVGDVDILVNNAGIVT 126 (300)
T ss_pred hcCCceEEEecccccc
Confidence 2367999999876543
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.8 Score=38.25 Aligned_cols=98 Identities=22% Similarity=0.197 Sum_probs=57.9
Q ss_pred CCCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-----CC
Q 022698 111 NDWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-----PF 184 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~ 184 (293)
....++.+||..|+|. |..+..+++.. +.++++++.++...+.+++ .+.. .+....-... ..
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~-----G~~V~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~ 228 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAM-----GAAVIAVDIKEEKLELAKE----LGAD---EVLNSLDDSPKDKKAAG 228 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc-----CCEEEEEcCCHHHHHHHHH----hCCC---EEEcCCCcCHHHHHHHh
Confidence 3456677888877652 45555555443 3689999999987766643 2321 1111110000 11
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
..+.+|+|+.+.. ....++++.+.|+++|.++....
T Consensus 229 ~~~~~D~vid~~g------------------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 229 LGGGFDVIFDFVG------------------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred cCCCceEEEECCC------------------CHHHHHHHHHHhhcCCEEEEECC
Confidence 2456898885421 12456778899999999987643
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=3.2 Score=35.60 Aligned_cols=77 Identities=16% Similarity=0.080 Sum_probs=51.0
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCH---HHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C--
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKK---RTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-- 184 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~---~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-- 184 (293)
++++|=.|+++ +.++..+++.+.+.| ++|+.++.+. +.++...+ ... ..++.++.+|+.+.. +
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G--~~v~~~~r~~~~~~~~~~~~~---~~~-~~~~~~~~~Dv~d~~~v~~~~~~ 80 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAG--AKLVFTYAGERLEKEVRELAD---TLE-GQESLLLPCDVTSDEEITACFET 80 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCC--CEEEEecCcccchHHHHHHHH---HcC-CCceEEEecCCCCHHHHHHHHHH
Confidence 56899999884 889999999988764 5888886543 33332222 211 134778889987632 0
Q ss_pred ---CCCcccEEEecchh
Q 022698 185 ---GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ---~~~~fD~Iv~~~~~ 198 (293)
.-+++|+++.|..+
T Consensus 81 ~~~~~g~ld~lv~nag~ 97 (257)
T PRK08594 81 IKEEVGVIHGVAHCIAF 97 (257)
T ss_pred HHHhCCCccEEEECccc
Confidence 12679999988654
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.25 E-value=2.2 Score=39.44 Aligned_cols=131 Identities=21% Similarity=0.210 Sum_probs=85.7
Q ss_pred CCCeEEEEcC-CCChHH--HHHHHHhhhcCCCcEEEEEeC-CHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC------
Q 022698 115 TVKTALDIGC-GRGILL--NAVATQFKKTGSLGRVVGLDC-KKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF------ 184 (293)
Q Consensus 115 ~~~~vLDiG~-G~G~~~--~~l~~~~~~~~~~~~v~~vDi-s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~------ 184 (293)
++..|+=+|- |+|-.+ .-|+.++.+.+...-++++|+ -|.|+++.+..+...+ +.|+..+-..-|.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~----v~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVG----VPFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcC----CceecCCCCCCHHHHHHHH
Confidence 4556777763 555443 445667766665667888895 5778888888888776 4555544333231
Q ss_pred ----CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHH---HH-HHcCCcce
Q 022698 185 ----GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVR---RL-QELKMEDI 256 (293)
Q Consensus 185 ----~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~l-~~~gf~~~ 256 (293)
....||+|++...=.+.- +++.-+-+++++..++|.=.|+++|.....+... .| ++.|+..+
T Consensus 175 l~~ak~~~~DvvIvDTAGRl~i----------de~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGv 244 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGRLHI----------DEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGV 244 (451)
T ss_pred HHHHHHcCCCEEEEeCCCcccc----------cHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceE
Confidence 235699999875543222 2366678889999999999999999877765333 33 24466655
Q ss_pred EEe
Q 022698 257 RVS 259 (293)
Q Consensus 257 ~~~ 259 (293)
-+.
T Consensus 245 IlT 247 (451)
T COG0541 245 ILT 247 (451)
T ss_pred EEE
Confidence 443
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.2 Score=40.58 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=80.6
Q ss_pred CeEEEEcC-CCCh--HHHHHHHHhhhcCCCcEEEEEe-CCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---------
Q 022698 117 KTALDIGC-GRGI--LLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--------- 183 (293)
Q Consensus 117 ~~vLDiG~-G~G~--~~~~l~~~~~~~~~~~~v~~vD-is~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--------- 183 (293)
..|+=+|- |+|- ...-++.++.+.|...-++|.| .-+.+.++.++|+...++ .|+..--..-|
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~i----P~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARV----PFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCC----eeEecccccchHHHHHHHHH
Confidence 34555553 3343 3334566667777767778888 567788899999888764 44432111112
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHH---HH-HHcCCcceEE
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVR---RL-QELKMEDIRV 258 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~l-~~~gf~~~~~ 258 (293)
+..+.||+|++...-.|-. ....-+-+.++.+.++|+-++++.|........+ .+ ...++..+-+
T Consensus 178 ~fKke~fdvIIvDTSGRh~q----------e~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIl 247 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQ----------EASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVIL 247 (483)
T ss_pred HHHhcCCcEEEEeCCCchhh----------hHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEE
Confidence 2346799999986655544 2245556777889999999999988876554332 33 2445555544
Q ss_pred e
Q 022698 259 S 259 (293)
Q Consensus 259 ~ 259 (293)
.
T Consensus 248 T 248 (483)
T KOG0780|consen 248 T 248 (483)
T ss_pred E
Confidence 3
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=91.78 E-value=2 Score=39.86 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.+++......++.+|+=+|+|. ++..++..+... +++|+++|+++..++.|+. .|. ... +..+
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~--IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e 253 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGD--VGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEE 253 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCH--HHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHH
Confidence 3455555544334678999999986 444444444333 4689999999886665543 332 111 1111
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHH-HHHHcccCCcEEEEEcCC
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLG-EMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~ 239 (293)
. . ..+|+|+.... .. ..+. ...+.+++||+++.+...
T Consensus 254 ~-v--~~aDVVI~atG-----------------~~-~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 254 A-V--KEGDIFVTTTG-----------------NK-DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred H-H--cCCCEEEECCC-----------------CH-HHHHHHHHhcCCCCcEEEEeCCC
Confidence 1 1 34799987522 11 2333 347799999999887754
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.78 E-value=4.4 Score=34.37 Aligned_cols=79 Identities=19% Similarity=0.105 Sum_probs=56.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++.++..++...+..+..+ .++.++.+|+.+.. + .
T Consensus 10 ~k~vlItG-a~g~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 10 GRRALVTG-SSQGIGYALAEGLAQAG--AEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 56788777 57889999999887764 589999999887766555554433 34778888987632 1 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|.|+.+....
T Consensus 85 ~~~~d~li~~ag~~ 98 (255)
T PRK07523 85 IGPIDILVNNAGMQ 98 (255)
T ss_pred cCCCCEEEECCCCC
Confidence 24689999886543
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.98 Score=38.39 Aligned_cols=101 Identities=25% Similarity=0.231 Sum_probs=57.9
Q ss_pred hcCCCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-----
Q 022698 109 SVNDWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL----- 182 (293)
Q Consensus 109 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~----- 182 (293)
.+....++.+||-.|+|+ |..+..+++. . +.++++++.++...+.+++. +.. .++...-...
T Consensus 128 ~~~~~~~~~~vli~g~~~~G~~~~~~a~~---~--g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~ 195 (271)
T cd05188 128 RAGVLKPGDTVLVLGAGGVGLLAAQLAKA---A--GARVIVTDRSDEKLELAKEL----GAD---HVIDYKEEDLEEELR 195 (271)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHH---c--CCeEEEEcCCHHHHHHHHHh----CCc---eeccCCcCCHHHHHH
Confidence 333345678999999886 4344434433 2 36999999998766655432 211 1111110110
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
....+.+|+++.+..- ...+..+.+.|+++|.++.....
T Consensus 196 ~~~~~~~d~vi~~~~~------------------~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 196 LTGGGGADVVIDAVGG------------------PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred HhcCCCCCEEEECCCC------------------HHHHHHHHHhcccCCEEEEEccC
Confidence 0123569999865221 13455667789999999886543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.63 Score=44.23 Aligned_cols=95 Identities=21% Similarity=0.236 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC------------
Q 022698 115 TVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS------------ 181 (293)
Q Consensus 115 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~------------ 181 (293)
++.+++=+|+|. |..+..+++.+ ++.|+++|.++..++.++. .+. +++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-----GA~V~v~d~~~~rle~a~~----lGa----~~v~v~~~e~g~~~~gYa~~~ 229 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-----GAIVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEGGSGDGYAKVM 229 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccccceeec
Confidence 567999999976 33333333332 3689999999997666554 232 232222211
Q ss_pred -----------CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 182 -----------LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 182 -----------~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
++-.-..+|+|+..-.+...+ .|..+.++..+.+|||+.++
T Consensus 230 s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~------------aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 230 SEEFIAAEMELFAAQAKEVDIIITTALIPGKP------------APKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECcccCCCC------------CCeeehHHHHhhCCCCCEEE
Confidence 000124589998765333322 34456677788899998876
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.41 E-value=6 Score=34.10 Aligned_cols=79 Identities=16% Similarity=0.071 Sum_probs=53.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC---------CCC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF---------GDN 187 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~ 187 (293)
.++|=.| |+|.++..+++.+.+. +.+|++++.+++.++...+.....+...++.++.+|+.+... .-+
T Consensus 4 k~~lItG-asg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 4 KIAIVTG-ASSGFGLLTTLELAKK--GYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CEEEEEC-CCchHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 4577777 5667888888887765 468999998887766555444443433458899999876321 014
Q ss_pred cccEEEecchh
Q 022698 188 YFDVVVSAAFF 198 (293)
Q Consensus 188 ~fD~Iv~~~~~ 198 (293)
+.|.|+.+...
T Consensus 81 ~id~vv~~ag~ 91 (280)
T PRK06914 81 RIDLLVNNAGY 91 (280)
T ss_pred CeeEEEECCcc
Confidence 67999887554
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.57 Score=42.31 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=39.0
Q ss_pred HHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHH
Q 022698 106 MVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT 162 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~ 162 (293)
++..+....+-..++|+|+|.|.++..+.-.+ +..|.++|-|....+.|++.
T Consensus 144 lvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-----~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 144 LVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-----GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-----CceEEEeccchHHHHHHHHH
Confidence 33444444556689999999999998887654 47999999998877766653
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.62 Score=35.21 Aligned_cols=85 Identities=20% Similarity=0.213 Sum_probs=54.8
Q ss_pred CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------CCCCcccEEEecchhh
Q 022698 126 RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------FGDNYFDVVVSAAFFH 199 (293)
Q Consensus 126 ~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~Iv~~~~~~ 199 (293)
.|..+..+++.. +.+|+++|.++..++.+++. |. ..++..+-.++. .....+|+|+-...-
T Consensus 2 vG~~a~q~ak~~-----G~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~- 68 (130)
T PF00107_consen 2 VGLMAIQLAKAM-----GAKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS- 68 (130)
T ss_dssp HHHHHHHHHHHT-----TSEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-
T ss_pred hHHHHHHHHHHc-----CCEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEecCc-
Confidence 466677777665 36999999999977766543 32 123322222110 123479999865321
Q ss_pred hhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 200 TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
...++....+|+|+|.++++....
T Consensus 69 -----------------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 -----------------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -----------------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred -----------------HHHHHHHHHHhccCCEEEEEEccC
Confidence 246677888999999999987654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.63 Score=43.11 Aligned_cols=119 Identities=17% Similarity=0.132 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC--CCC-CCCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS--LPF-GDNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~--~~~-~~~~fD~ 191 (293)
.+..+.|+|.|.|.-.-++....+.. ...++.||.|..|+.....+.....-.+.+......+.. +|. ....||+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t--~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQT--KREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccc--cceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceee
Confidence 34568888887765554443333321 348999999999999888886651100111111101111 232 2455999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHH-HHHcccCCcEEEEEcCCCchHH
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGE-MVRVLKPGGVGVVWDLLHVPEY 244 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~~~~~~ 244 (293)
|++...+++..... ......+. +.+..++|+.++++........
T Consensus 278 vi~ah~l~~~~s~~---------~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~ 322 (491)
T KOG2539|consen 278 VICAHKLHELGSKF---------SRLDVPESLWRKTDRSGYFLVIIEKGTTMGL 322 (491)
T ss_pred EEeeeeeeccCCch---------hhhhhhHHHHHhccCCCceEEEEecCCccch
Confidence 99998888765211 22223333 3467889999999876654433
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=5.7 Score=35.62 Aligned_cols=78 Identities=19% Similarity=0.131 Sum_probs=55.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 185 (293)
+++||=.| |+|.++..+++.+.+.| .+|+.++.+++.++...+.....+ .++.++.+|+.+.. . .
T Consensus 8 ~k~vlITG-as~gIG~~la~~la~~G--~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 8 RQVVVITG-ASAGVGRATARAFARRG--AKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45677777 56778888888887664 689999999888776666655544 34788899987632 0 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-+++|++|.|...
T Consensus 83 ~g~iD~lInnAg~ 95 (334)
T PRK07109 83 LGPIDTWVNNAMV 95 (334)
T ss_pred CCCCCEEEECCCc
Confidence 2578999988654
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.72 Score=36.31 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=32.0
Q ss_pred EEcCCCC--hHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHH--HHhcCCCCceEEEEcC
Q 022698 121 DIGCGRG--ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT--AKMEGVQEYVTAREGD 178 (293)
Q Consensus 121 DiG~G~G--~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~--~~~~~~~~~v~~~~~d 178 (293)
|||++.| .....++.. ..+++.+++++|+++..++..+++ +..+.....+++....
T Consensus 1 DvGA~~G~~~~~~~~~~~--~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~ 60 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEK--KCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA 60 (167)
T ss_dssp EES-TTS--HHHHHHHHH--HTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred CcccCCChhHHHHHHHHH--HcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence 8999999 554444322 223357999999999999999988 5555332335555443
|
; PDB: 2PY6_A. |
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.20 E-value=3.9 Score=34.88 Aligned_cols=77 Identities=22% Similarity=0.131 Sum_probs=51.6
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|-.|.++ +.++..+++.+.+.| .+|+.++.+....+.+++. .+ .++.++.+|+.+.. +
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G--~~Vi~~~r~~~~~~~~~~~---~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQG--ATVIYTYQNDRMKKSLQKL---VD--EEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCC--CEEEEecCchHHHHHHHhh---cc--CceeEEeCCCCCHHHHHHHHHHHHH
Confidence 56788888875 689999999988764 6899888775432222221 11 24778889987632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-+++|++|.|..+.
T Consensus 80 ~~g~iD~lv~nAg~~ 94 (252)
T PRK06079 80 RVGKIDGIVHAIAYA 94 (252)
T ss_pred HhCCCCEEEEccccc
Confidence 125799999987653
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.57 Score=41.27 Aligned_cols=98 Identities=20% Similarity=0.122 Sum_probs=67.7
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
+.+|.=||.|. |..+..++.-+ +++|+-+|+|.+.++.....+. .++..+..+..++...-.+.|+||.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-----gA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIg 237 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-----GADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIG 237 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-----CCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEE
Confidence 45677788876 66665555433 5799999999987776665543 4477777766554323356899997
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.-.+--.. .|....+++...+|||+.++=
T Consensus 238 aVLIpgak------------aPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 238 AVLIPGAK------------APKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEecCCC------------CceehhHHHHHhcCCCcEEEE
Confidence 53333222 677888999999999998874
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=5.9 Score=34.37 Aligned_cols=78 Identities=17% Similarity=0.074 Sum_probs=51.2
Q ss_pred CCeEEEEcCC-CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------C
Q 022698 116 VKTALDIGCG-RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------F 184 (293)
Q Consensus 116 ~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 184 (293)
++.+|=.|++ ++.++..+++.+.+.| ++|+.++.++...+.+.+.....+ .. .++.+|+.+.. -
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~ 79 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQG--AELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKK 79 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCC--CEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHH
Confidence 4678888887 3678899998887764 689988988643233333323323 22 46778887642 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-+++|++|.|..+
T Consensus 80 ~~g~iDilVnnAG~ 93 (274)
T PRK08415 80 DLGKIDFIVHSVAF 93 (274)
T ss_pred HcCCCCEEEECCcc
Confidence 12679999998765
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=4.9 Score=34.38 Aligned_cols=75 Identities=23% Similarity=0.217 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+|.+++.++...+.. + .++.++.+|+.+.. + .
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAAG--ARVAIVDIDADNGAAVAASL---G--ERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh---C--CeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 45777777 56778888988887764 59999999887554443322 2 34788899987632 1 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|+++.|...
T Consensus 78 ~g~id~lv~~ag~ 90 (261)
T PRK08265 78 FGRVDILVNLACT 90 (261)
T ss_pred hCCCCEEEECCCC
Confidence 1468999988654
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=9 Score=32.44 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=55.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=.| |+|.++..+++.+.+. +.+|+.++.+++.++...+..+..+ .++.++.+|+.+.. +
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGA--GAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 356788777 5777888888888765 4699999999877766555554443 34788899987532 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|.++.+...
T Consensus 85 ~~~~id~vi~~ag~ 98 (256)
T PRK06124 85 EHGRLDILVNNVGA 98 (256)
T ss_pred hcCCCCEEEECCCC
Confidence 12467999987654
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.56 Score=39.09 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=37.0
Q ss_pred ccEEEecchhhhhcc---c--c--CcchhhhHHHHHHHHHHHHHcccCCcEEEE-EcCCCch--HHHHHHHHcC-CcceE
Q 022698 189 FDVVVSAAFFHTVGK---E--Y--GHRTVEAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVP--EYVRRLQELK-MEDIR 257 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~---~--~--~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~--~~~~~l~~~g-f~~~~ 257 (293)
.|+|+..|||..... . . .........-....+.++.|+|||||.+++ ++..... -...+.+..| |....
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFGGFFLRN 80 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHTT-EEEE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhhhhheec
Confidence 488999999876553 0 0 011111122345688999999999999877 4444444 2333444557 76544
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.72 Score=40.51 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=48.6
Q ss_pred CCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceE----EEEcCCCCCC-----CCCCcccEEEe
Q 022698 124 CGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVT----AREGDVRSLP-----FGDNYFDVVVS 194 (293)
Q Consensus 124 ~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~----~~~~d~~~~~-----~~~~~fD~Iv~ 194 (293)
.|+|.++..|++++-+.++ .+++.+|.++..+...++.+......+++. .+.+|+.+.. +...+.|+|+-
T Consensus 5 Ga~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfH 83 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFH 83 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE
T ss_pred ccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEE
Confidence 4789999999999876543 689999999999998888875332222344 4478887632 44567999999
Q ss_pred cchhhhhc
Q 022698 195 AAFFHTVG 202 (293)
Q Consensus 195 ~~~~~~~~ 202 (293)
...+-|++
T Consensus 84 aAA~KhVp 91 (293)
T PF02719_consen 84 AAALKHVP 91 (293)
T ss_dssp ------HH
T ss_pred ChhcCCCC
Confidence 88887776
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.29 E-value=7 Score=32.63 Aligned_cols=116 Identities=21% Similarity=0.029 Sum_probs=67.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F----G----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~----~----- 185 (293)
+++||=.|+ +|.++..+++.+.+.| .+|++++.++...+...+..... .++.++.+|+.+.. . .
T Consensus 5 ~~~vlItGa-~g~iG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 5 GKKVAIIGV-SEGLGYAVAYFALKEG--AQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 457888887 5778888888887664 59999999988766554443332 24788899987632 0 0
Q ss_pred CCcccEEEecchhhhhccccCcchhh-----hHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVE-----AAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-++.|.++.+............+... ....+..+++.+...++++|.++++.
T Consensus 79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 13468888775432111000000000 00011234566667778888877744
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.27 E-value=9.6 Score=32.49 Aligned_cols=80 Identities=14% Similarity=-0.074 Sum_probs=54.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 185 (293)
++++|=.|+ +|.++..+++.+.+. +++|+.++.+++.++.+.+.........++.++..|+.+.. . .
T Consensus 8 ~k~~lItGa-s~giG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 8 GRVAVVTGG-SSGIGLATVELLLEA--GASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 457887875 566788888888765 46899999998877766555443321234778888987632 0 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|+++.|...
T Consensus 85 ~g~id~li~~Ag~ 97 (265)
T PRK07062 85 FGGVDMLVNNAGQ 97 (265)
T ss_pred cCCCCEEEECCCC
Confidence 2568999988654
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=9.9 Score=33.37 Aligned_cols=81 Identities=19% Similarity=0.063 Sum_probs=54.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
+++||=.| |+|.++..+++.+.+.| .+|+.++.++...+.+.+.........++.++.+|+.+.. . .
T Consensus 16 ~k~vlItG-as~gIG~~~a~~l~~~G--~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 16 GRVAVVTG-ANTGLGYETAAALAAKG--AHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 45777665 57788999999888764 5899999887766655444432211234788899987642 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 93 ~~~iD~li~nAg~~ 106 (306)
T PRK06197 93 YPRIDLLINNAGVM 106 (306)
T ss_pred CCCCCEEEECCccc
Confidence 24689999986543
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=90.19 E-value=1.5 Score=39.91 Aligned_cols=119 Identities=14% Similarity=0.116 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH-------hcCC-CCce
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK-------MEGV-QEYV 172 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~-------~~~~-~~~v 172 (293)
+....+++.+. ..+.....|+|.|.|.....++.... ...-+|++++...-+.+..+.. ..|- .+.+
T Consensus 179 ~ql~si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~----~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~ 253 (419)
T KOG3924|consen 179 EQLRSIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAG----CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKI 253 (419)
T ss_pred HHHHHHHHHhc-cCCCCcccCCCcccchhhHHHHHhhc----cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCce
Confidence 34444555553 57788999999999999988887654 2466788877765555554432 2222 2346
Q ss_pred EEEEcCCCCCC---CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 173 TAREGDVRSLP---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 173 ~~~~~d~~~~~---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+.++++..... .-....++|++|++...- +...-++++..-+++|-+++=..
T Consensus 254 ~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp-------------~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 254 ETIHGSFLDPKRVTEIQTEATVIFVNNVAFDP-------------ELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred eecccccCCHHHHHHHhhcceEEEEecccCCH-------------HHHHhhHHHHhhCCCcceEeccc
Confidence 77777776522 112457999998765322 33334457888899999887533
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.19 E-value=7.7 Score=32.96 Aligned_cols=78 Identities=24% Similarity=0.101 Sum_probs=56.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++.++..++...+.....+ .++.++.+|+.+.. . .
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAG--ARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46788888 67889999999987764 589999999877766655544433 34778899987632 1 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.++.|.|+.+...
T Consensus 87 ~~~id~vi~~ag~ 99 (259)
T PRK08213 87 FGHVDILVNNAGA 99 (259)
T ss_pred hCCCCEEEECCCC
Confidence 1468999988654
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.07 E-value=3 Score=38.23 Aligned_cols=74 Identities=26% Similarity=0.196 Sum_probs=52.3
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C--CCCcccEEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F--GDNYFDVVV 193 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~~fD~Iv 193 (293)
.+||=||| |.++...+..+.+.+ ..+|+..|.|.+.++.+..... .+++..+.|+.+.+ . .-..+|+|+
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~-d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNG-DGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEE
Confidence 47899999 777877887776654 2699999999886665554422 25889999998753 1 113469999
Q ss_pred ecchh
Q 022698 194 SAAFF 198 (293)
Q Consensus 194 ~~~~~ 198 (293)
+..|.
T Consensus 74 n~~p~ 78 (389)
T COG1748 74 NAAPP 78 (389)
T ss_pred EeCCc
Confidence 87554
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.94 E-value=2.2 Score=37.96 Aligned_cols=93 Identities=25% Similarity=0.266 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC---CCCCCCCCCcc
Q 022698 115 TVKTALDIGCGR-GILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD---VRSLPFGDNYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~f 189 (293)
++.+||-.|+|. |..+..+++.. +. ++++++.++...+.+++. +.. .++..+ ........+.+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-----G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-----GAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCCc
Confidence 677888887654 44444444443 34 789999988876654432 321 122111 11111122358
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|+|+..... ...++.+.+.|+++|+++.+.
T Consensus 233 d~vld~~g~------------------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 233 DVVFEASGA------------------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred cEEEECCCC------------------HHHHHHHHHHHhcCCEEEEEe
Confidence 999864221 124567788999999998764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.81 E-value=8 Score=33.44 Aligned_cols=79 Identities=20% Similarity=0.113 Sum_probs=51.1
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++.+|=.|+++ +.++..+++.+.+.| ++|+.++.++...+..++.....+. ..++.+|+.+.. +
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~G--a~V~~~~r~~~~~~~~~~~~~~~g~---~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQG--AELAFTYQGEALGKRVKPLAESLGS---DFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCC--CEEEEecCchHHHHHHHHHHHhcCC---ceEEeCCCCCHHHHHHHHHHHHH
Confidence 46788899876 478888888887764 6888888775433333333222221 246788887632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 82 ~~g~iD~lVnnAG~~ 96 (271)
T PRK06505 82 KWGKLDFVVHAIGFS 96 (271)
T ss_pred HhCCCCEEEECCccC
Confidence 126799999886543
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.81 E-value=11 Score=32.00 Aligned_cols=80 Identities=23% Similarity=0.138 Sum_probs=56.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+.....+...++.++.+|+.+.. + .
T Consensus 7 ~k~vlVtGa-s~gIG~~~a~~l~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 7 GKVALVTGA-AQGIGAAIARAFAREG--AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467887776 5678888888887764 6899999998877766665554222245788899987632 1 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|.+|.|...
T Consensus 84 ~g~id~li~~ag~ 96 (260)
T PRK07063 84 FGPLDVLVNNAGI 96 (260)
T ss_pred hCCCcEEEECCCc
Confidence 1468999988654
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.80 E-value=11 Score=31.86 Aligned_cols=80 Identities=19% Similarity=0.041 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+.........++.++.+|+.+.. + .
T Consensus 9 ~k~~lItGa-~~gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 9 GQTALITGA-SKGIGLAIAREFLGLG--ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 457887876 5678888888887664 5899999988877766655544311235788899987531 0 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|.|+.+...
T Consensus 86 ~g~id~li~~ag~ 98 (257)
T PRK09242 86 WDGLHILVNNAGG 98 (257)
T ss_pred cCCCCEEEECCCC
Confidence 2568999988654
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=89.78 E-value=2.7 Score=35.52 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=65.6
Q ss_pred cCC-CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEEcCCCCCC-----C-----CC-Ccc
Q 022698 123 GCG-RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-EGVQEYVTAREGDVRSLP-----F-----GD-NYF 189 (293)
Q Consensus 123 G~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~-~~~~~~v~~~~~d~~~~~-----~-----~~-~~f 189 (293)
|+| ++.++..+++.+.+. +++|+.++.+++.++...+.+.. .+ .+++.+|+.+.. + .. ++.
T Consensus 1 g~~~s~GiG~aia~~l~~~--Ga~V~~~~~~~~~~~~~~~~l~~~~~----~~~~~~D~~~~~~v~~~~~~~~~~~~g~i 74 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEE--GANVILTDRNEEKLADALEELAKEYG----AEVIQCDLSDEESVEALFDEAVERFGGRI 74 (241)
T ss_dssp STSSTSHHHHHHHHHHHHT--TEEEEEEESSHHHHHHHHHHHHHHTT----SEEEESCTTSHHHHHHHHHHHHHHHCSSE
T ss_pred CCCCCCChHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHHHcC----CceEeecCcchHHHHHHHHHHHhhcCCCe
Confidence 555 577888888888776 47999999999976544444433 33 236889987532 0 12 789
Q ss_pred cEEEecchhhhhc--cccCcchhhhHHHH-----------HHHHHHHHHcccCCcEEEEEc
Q 022698 190 DVVVSAAFFHTVG--KEYGHRTVEAAAER-----------MRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 190 D~Iv~~~~~~~~~--~~~~~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|++|.|....... ..+..+ .+.++. ..+.+.+.+.++++|.++++.
T Consensus 75 D~lV~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~is 133 (241)
T PF13561_consen 75 DILVNNAGISPPSNVEKPLLD--LSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINIS 133 (241)
T ss_dssp SEEEEEEESCTGGGTSSSGGG--SHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEecccccccccCCCChHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccc
Confidence 9999875543321 011011 011121 235566667888999887753
|
... |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.69 E-value=9 Score=33.47 Aligned_cols=117 Identities=20% Similarity=0.148 Sum_probs=65.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHH-HHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR-TTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.++. ..+......+..+ .++.++.+|+.+.. +.
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~~G--~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAKEG--ADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCC--CEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 457887774 6778888888887664 68888887753 2333333333333 34788899987632 10
Q ss_pred -CCcccEEEecchhhhhccc---cCcchh-----hhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 -DNYFDVVVSAAFFHTVGKE---YGHRTV-----EAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~~~~~~---~~~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-+++|+||.+......... ...+.+ .....+..+++.+.+.++++|.++++.
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 1468999987554221100 000000 000122345566666677778777643
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=9.2 Score=33.06 Aligned_cols=79 Identities=19% Similarity=0.064 Sum_probs=50.6
Q ss_pred CCeEEEEcCC-CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------C
Q 022698 116 VKTALDIGCG-RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------F 184 (293)
Q Consensus 116 ~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 184 (293)
++++|=.|++ ++.++..+++.+.+.| ++|+.++.++...+.+++..+..+ ....+.+|+.+.. .
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G--~~V~l~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~ 84 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAG--AELAFTYQGDALKKRVEPLAAELG---AFVAGHCDVTDEASIDAVFETLEK 84 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCC--CEEEEEcCchHHHHHHHHHHHhcC---CceEEecCCCCHHHHHHHHHHHHH
Confidence 4578888887 5789999999988764 588877765432333333333322 2456788886532 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|..+.
T Consensus 85 ~~g~iD~lv~nAG~~ 99 (272)
T PRK08159 85 KWGKLDFVVHAIGFS 99 (272)
T ss_pred hcCCCcEEEECCccc
Confidence 125789999986543
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.23 Score=39.32 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=34.1
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
.++||.+.|...++|..--.--++..+. ...+.+.++.++|||||.|++.
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~-Gdl~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPI-GDLRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred hccchhhheechhccccccccCCCCCcc-ccHHHHHHHHHhhccCCeEEEE
Confidence 4679999999888776532111222222 2246778899999999999983
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.50 E-value=12 Score=31.53 Aligned_cols=79 Identities=15% Similarity=-0.006 Sum_probs=55.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------CC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------GD 186 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~ 186 (293)
+++|=.| |+|.++..+++++.+.| .+|+.++.++..++.............++.++.+|+.+.. . ..
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKG--RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4677677 57889999999987764 5899999998877666554443221235888999988642 0 12
Q ss_pred CcccEEEecchh
Q 022698 187 NYFDVVVSAAFF 198 (293)
Q Consensus 187 ~~fD~Iv~~~~~ 198 (293)
++.|.|+.+..+
T Consensus 80 ~~id~vi~~ag~ 91 (248)
T PRK08251 80 GGLDRVIVNAGI 91 (248)
T ss_pred CCCCEEEECCCc
Confidence 468999988654
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.42 E-value=5.5 Score=34.02 Aligned_cols=77 Identities=23% Similarity=0.075 Sum_probs=51.4
Q ss_pred CCeEEEEcCC-CChHHHHHHHHhhhcCCCcEEEEEeCCH--HHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C---
Q 022698 116 VKTALDIGCG-RGILLNAVATQFKKTGSLGRVVGLDCKK--RTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F--- 184 (293)
Q Consensus 116 ~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~--~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~--- 184 (293)
++++|=.|+| ++.++..+++.+.+.| .+|+.++.+. +.++...+. .+ .++.++.+|+.+.. .
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G--~~v~l~~r~~~~~~~~~~~~~---~~--~~~~~~~~Dv~~~~~i~~~~~~~ 79 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQG--AEVVLTGFGRALRLTERIAKR---LP--EPAPVLELDVTNEEHLASLADRV 79 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCC--CEEEEecCccchhHHHHHHHh---cC--CCCcEEeCCCCCHHHHHHHHHHH
Confidence 4689999986 7889999999888764 6888888764 333332222 11 23667888987632 0
Q ss_pred --CCCcccEEEecchhh
Q 022698 185 --GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 --~~~~fD~Iv~~~~~~ 199 (293)
.-+++|++|.|..+.
T Consensus 80 ~~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 80 REHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHHcCCCcEEEEccccc
Confidence 126799999986543
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.27 E-value=8.7 Score=32.65 Aligned_cols=75 Identities=17% Similarity=0.084 Sum_probs=52.3
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC------C
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG------D 186 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~------~ 186 (293)
++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+... ..++.++.+|+.+.. +. .
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAAEG--WRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5677764 5788888888887664 699999999887665544332 134889999997632 00 3
Q ss_pred CcccEEEecchhh
Q 022698 187 NYFDVVVSAAFFH 199 (293)
Q Consensus 187 ~~fD~Iv~~~~~~ 199 (293)
+++|.|+.+....
T Consensus 76 ~~id~vi~~ag~~ 88 (260)
T PRK08267 76 GRLDVLFNNAGIL 88 (260)
T ss_pred CCCCEEEECCCCC
Confidence 5689999886543
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.26 E-value=9.8 Score=32.56 Aligned_cols=78 Identities=22% Similarity=0.103 Sum_probs=48.1
Q ss_pred CCeEEEEcCCCC-hHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRG-ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G-~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++.+|=.|+++| .++..+++.+.+.| ++|+.++.++...+.+++.....+. ..++.+|+.+.. +
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G--~~v~~~~r~~~~~~~~~~l~~~~g~---~~~~~~Dv~~~~~v~~~~~~~~~ 82 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHG--AELWFTYQSEVLEKRVKPLAEEIGC---NFVSELDVTNPKSISNLFDDIKE 82 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcC--CEEEEEeCchHHHHHHHHHHHhcCC---ceEEEccCCCHHHHHHHHHHHHH
Confidence 457888888775 58888888877654 5888888775332233333222221 235678887632 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|..+
T Consensus 83 ~~g~iDilVnnag~ 96 (260)
T PRK06603 83 KWGSFDFLLHGMAF 96 (260)
T ss_pred HcCCccEEEEcccc
Confidence 12679999987654
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.25 E-value=9 Score=32.45 Aligned_cols=79 Identities=19% Similarity=0.056 Sum_probs=55.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+.....+ .++.++.+|+.+.. + .
T Consensus 9 ~k~vlVtGa-s~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 9 GKRALITGA-STGIGKRVALAYVEAG--AQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 567888886 5567888888887764 589999999887776665554443 34778889987632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|+++.|....
T Consensus 84 ~g~id~lv~~ag~~ 97 (253)
T PRK05867 84 LGGIDIAVCNAGII 97 (253)
T ss_pred hCCCCEEEECCCCC
Confidence 15789999886543
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=89.24 E-value=9 Score=29.91 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=54.7
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC--HHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------CC
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK--KRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------FG 185 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis--~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 185 (293)
++|=.|+ +|.++..+++.+-+.| +.+++.+..+ .+..+......+..+ .++.+..+|+.+.. ..
T Consensus 2 ~~lItGa-~~giG~~~a~~l~~~g-~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 2 TVLITGA-SSGIGRALARALARRG-ARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEETT-TSHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred EEEEECC-CCHHHHHHHHHHHhcC-ceEEEEeeecccccccccccccccccc--cccccccccccccccccccccccccc
Confidence 4555665 5778899998887764 4688888888 555555555555544 56899999987632 12
Q ss_pred CCcccEEEecchhhh
Q 022698 186 DNYFDVVVSAAFFHT 200 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~ 200 (293)
.++.|++++|.....
T Consensus 78 ~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 78 FGPLDILINNAGIFS 92 (167)
T ss_dssp HSSESEEEEECSCTT
T ss_pred ccccccccccccccc
Confidence 367999999866544
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=89.14 E-value=1.9 Score=38.84 Aligned_cols=98 Identities=19% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeC---CHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCccc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDC---KKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFD 190 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDi---s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 190 (293)
.++.+||=+|+| .++...++..... ++++++++. ++..++.+++ .|.. .+.....+..+ ....+.+|
T Consensus 171 ~~g~~vlI~G~G--~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~-~~~~~~~d 240 (355)
T cd08230 171 WNPRRALVLGAG--PIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAE-VKLVGEFD 240 (355)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhh-hhhcCCCC
Confidence 356789888864 4544444333333 358999987 5665555443 3421 11111111111 01124589
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
+|+-... . ...+....+.|++||.++++...
T Consensus 241 ~vid~~g-----------------~-~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 241 LIIEATG-----------------V-PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred EEEECcC-----------------C-HHHHHHHHHHccCCcEEEEEecC
Confidence 8886421 0 13566778899999999886643
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.99 E-value=7.3 Score=32.77 Aligned_cols=116 Identities=16% Similarity=0.034 Sum_probs=65.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHH-HHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR-TTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|-.|+ +|.++..+++.+.+.| .+|++++.+.. ..+......+..+ .++.++.+|+.+.. +.
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G--~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAG--AHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCC--CEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 457888875 5678888888887654 58888877542 3333333333322 34778889987632 00
Q ss_pred -CCcccEEEecchhhhhcc-ccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 186 -DNYFDVVVSAAFFHTVGK-EYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
-+..|+|+.+........ .+.............+++.+.+.++.+|.++++
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 135899887754321110 000000011113445677777777767777664
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.98 E-value=2.2 Score=35.74 Aligned_cols=74 Identities=22% Similarity=0.184 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------- 183 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 183 (293)
..+.||-.||.+|.++.++++++.+.| ..|+++-.+-+-..... ...| +.....|+.+..
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G--~~V~AtaR~~e~M~~L~---~~~g----l~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNG--YLVYATARRLEPMAQLA---IQFG----LKPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCC--eEEEEEccccchHhhHH---HhhC----CeeEEeccCChHHHHHHHHHHhh
Confidence 456899999999999999999998764 69999876654332222 1223 445566665421
Q ss_pred CCCCcccEEEecch
Q 022698 184 FGDNYFDVVVSAAF 197 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~ 197 (293)
+++++.|+.+.|..
T Consensus 77 ~~~Gkld~L~NNAG 90 (289)
T KOG1209|consen 77 NPDGKLDLLYNNAG 90 (289)
T ss_pred CCCCceEEEEcCCC
Confidence 35789999997744
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.95 E-value=1.3 Score=40.21 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=69.2
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
+.++..++....++.+|+|.+|-.|.-+.+++..+.+. .++.|+|.+....+..++.....|... +....+|+...
T Consensus 201 asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~---gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~t 276 (413)
T KOG2360|consen 201 ASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQ---GKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLNT 276 (413)
T ss_pred hhcchhhhcCCCCCCceeeeccccccchhhHHHHhhcc---CCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccccCC
Confidence 33445555555677899999999999999999888754 499999999999999999988888743 56668888764
Q ss_pred CCC--CCcccEEEecchh
Q 022698 183 PFG--DNYFDVVVSAAFF 198 (293)
Q Consensus 183 ~~~--~~~fD~Iv~~~~~ 198 (293)
+.+ =.....|++.|..
T Consensus 277 ~~~~~~~~v~~iL~Dpsc 294 (413)
T KOG2360|consen 277 ATPEKFRDVTYILVDPSC 294 (413)
T ss_pred CCcccccceeEEEeCCCC
Confidence 321 1346677776664
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.80 E-value=13 Score=31.34 Aligned_cols=78 Identities=18% Similarity=0.089 Sum_probs=54.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+++.++.++..++.........+ .++.++.+|+.+.. + .
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G--~~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYG--AEIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 45677777 56788888988887664 699999999877666555544433 34677888887632 1 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.+++|.|+.+...
T Consensus 84 ~~~id~vi~~ag~ 96 (254)
T PRK08085 84 IGPIDVLINNAGI 96 (254)
T ss_pred cCCCCEEEECCCc
Confidence 2568999998654
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.78 E-value=2.1 Score=37.45 Aligned_cols=109 Identities=20% Similarity=0.179 Sum_probs=68.3
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-cCCCCCCCCCCcccEEEecc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE-GDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~Iv~~~ 196 (293)
+|+=+| .|.++..+++.+...|....+++.|.+...++.+. ..++. ... .+... ......|+|+..-
T Consensus 5 ~v~IvG--~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~----~lgv~----d~~~~~~~~--~~~~~aD~Vivav 72 (279)
T COG0287 5 KVGIVG--LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL----ELGVI----DELTVAGLA--EAAAEADLVIVAV 72 (279)
T ss_pred EEEEEC--CchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh----hcCcc----cccccchhh--hhcccCCEEEEec
Confidence 566666 67788888888888777678899999887554443 23321 111 11111 1234589999886
Q ss_pred hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCc
Q 022698 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKME 254 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~ 254 (293)
|... ...+++++...|++|..+.=+... -....+.+++.+-.
T Consensus 73 Pi~~---------------~~~~l~~l~~~l~~g~iv~Dv~S~-K~~v~~a~~~~~~~ 114 (279)
T COG0287 73 PIEA---------------TEEVLKELAPHLKKGAIVTDVGSV-KSSVVEAMEKYLPG 114 (279)
T ss_pred cHHH---------------HHHHHHHhcccCCCCCEEEecccc-cHHHHHHHHHhccC
Confidence 6653 457888888899998776432221 23466666666544
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.76 E-value=12 Score=32.35 Aligned_cols=79 Identities=28% Similarity=0.146 Sum_probs=54.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+...| .+|+.+|.++..++...+..+..+ .++.++.+|+.+.. . .
T Consensus 6 ~k~vlVTGa-s~gIG~ala~~La~~G--~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 6 GRGAVITGG-ASGIGLATGTEFARRG--ARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 456776665 5778888988887764 589999999887766555544433 34788889987632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|..+.
T Consensus 81 ~g~id~li~nAg~~ 94 (275)
T PRK05876 81 LGHVDVVFSNAGIV 94 (275)
T ss_pred cCCCCEEEECCCcC
Confidence 24689999887653
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.74 E-value=6.7 Score=32.93 Aligned_cols=78 Identities=22% Similarity=0.103 Sum_probs=53.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.| |+|.++..+++.+.+.| .++++++.+++.++...+..+..+ .++.++.+|+.+.. +.
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAEAG--ATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46788666 57889999998887664 589999988876665555444333 34888899987632 11
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|.|+.+...
T Consensus 82 ~~~id~vi~~ag~ 94 (250)
T PRK12939 82 LGGLDGLVNNAGI 94 (250)
T ss_pred cCCCCEEEECCCC
Confidence 1468999987543
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.71 E-value=5.2 Score=35.79 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=54.3
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH-------hcCCC-----CceEEEEcCCCCCCC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK-------MEGVQ-----EYVTAREGDVRSLPF 184 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~-------~~~~~-----~~v~~~~~d~~~~~~ 184 (293)
.+|-=||+| .++..++..+... +.+|+..|++++.++.+++... ..+.. .++.+. .|..+
T Consensus 8 ~~VaVIGaG--~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~--- 79 (321)
T PRK07066 8 KTFAAIGSG--VIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA--- 79 (321)
T ss_pred CEEEEECcC--HHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---
Confidence 467777765 4555555555443 4699999999998876655432 11111 112221 12111
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
.-...|+|+-+-+- .. +-...+++++.+.++|+.+|.
T Consensus 80 av~~aDlViEavpE-~l------------~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 80 CVADADFIQESAPE-RE------------ALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred HhcCCCEEEECCcC-CH------------HHHHHHHHHHHHhCCCCeEEE
Confidence 11346888876321 11 134567788888888877444
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=88.70 E-value=6.7 Score=33.57 Aligned_cols=79 Identities=18% Similarity=0.079 Sum_probs=48.8
Q ss_pred CCeEEEEcCC-CChHHHHHHHHhhhcCCCcEEEEEeCCHH--HHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C---
Q 022698 116 VKTALDIGCG-RGILLNAVATQFKKTGSLGRVVGLDCKKR--TTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F--- 184 (293)
Q Consensus 116 ~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~--~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~--- 184 (293)
++++|=.|++ ++.++..+++.+.+.| .+|+.++.+.+ ..+...+.....+ .++.++..|+.+.. +
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAAG--AELGITYLPDEKGRFEKKVRELTEPL--NPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHCC--CEEEEEecCcccchHHHHHHHHHhcc--CcceEeecCcCCHHHHHHHHHHH
Confidence 4678999985 6889999999988764 57777654432 1111111222222 23567788887632 0
Q ss_pred --CCCcccEEEecchh
Q 022698 185 --GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 --~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|..+
T Consensus 82 ~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 82 KQKWGKLDILVHCLAF 97 (258)
T ss_pred HHHcCCCCEEEEcccc
Confidence 12579999988764
|
|
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=88.66 E-value=0.89 Score=43.58 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=60.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC----C----C
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL----P----F 184 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~----~----~ 184 (293)
+.+...|||+||..|.+....++.+|. ++-|+|+|+-|-- ..+++.-++.|+..- + .
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv---~slivGvDl~pik------------p~~~c~t~v~dIttd~cr~~l~k~l 106 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPV---GSLIVGVDLVPIK------------PIPNCDTLVEDITTDECRSKLRKIL 106 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCC---CceEEEeeeeecc------------cCCccchhhhhhhHHHHHHHHHHHH
Confidence 356678999999999999988888874 5699999997630 112244444444321 1 1
Q ss_pred CCCcccEEEecchh----hhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 185 GDNYFDVVVSAAFF----HTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
...+.|+|+....- .|.. +.+....-....++-+...|+.||.++
T Consensus 107 ~t~~advVLhDgapnVg~~w~~-----DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 107 KTWKADVVLHDGAPNVGGNWVQ-----DAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred HhCCCcEEeecCCCccchhHHH-----HHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 23456888864321 1221 001101111235566667899999944
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.65 E-value=9.5 Score=32.98 Aligned_cols=79 Identities=16% Similarity=0.041 Sum_probs=54.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 185 (293)
+.++|=.| |+|.++..+++.+.+.| .+|+.+|.++..++...+.....+ .++.++.+|+.+.. . .
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALG--MKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45788555 66888999998887664 689999998876665544444333 34788899987632 0 0
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
.++.|+|+.+....
T Consensus 81 ~g~id~vi~~Ag~~ 94 (287)
T PRK06194 81 FGAVHLLFNNAGVG 94 (287)
T ss_pred cCCCCEEEECCCCC
Confidence 14579999886653
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=88.57 E-value=3 Score=39.36 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-----------
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF----------- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 184 (293)
..+++|+.||.|.+...+-.. | ...+.++|+++.+.+.-+.|.... +.......|+.++..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a----G-~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~ 159 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI----G-GQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEA 159 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc----C-CEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhh
Confidence 458999999999998877543 2 247789999999888777774211 112344556555421
Q ss_pred ------CCCcccEEEecchhhhhc
Q 022698 185 ------GDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 185 ------~~~~fD~Iv~~~~~~~~~ 202 (293)
.-..+|+++..+|...+.
T Consensus 160 ~~~~~~~~p~~DvL~gGpPCQ~FS 183 (467)
T PRK10458 160 AEHIRQHIPDHDVLLAGFPCQPFS 183 (467)
T ss_pred hhhhhccCCCCCEEEEcCCCCccc
Confidence 012589999998876554
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=88.53 E-value=1.3 Score=35.29 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=60.9
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchh
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFF 198 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~ 198 (293)
|-=||+ |..+..+++.+.+.| .+|++.|.+++..+...+. + +.. ..+..+. -...|+|++.-+-
T Consensus 4 Ig~IGl--G~mG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~~----g----~~~-~~s~~e~---~~~~dvvi~~v~~ 67 (163)
T PF03446_consen 4 IGFIGL--GNMGSAMARNLAKAG--YEVTVYDRSPEKAEALAEA----G----AEV-ADSPAEA---AEQADVVILCVPD 67 (163)
T ss_dssp EEEE----SHHHHHHHHHHHHTT--TEEEEEESSHHHHHHHHHT----T----EEE-ESSHHHH---HHHBSEEEE-SSS
T ss_pred EEEEch--HHHHHHHHHHHHhcC--CeEEeeccchhhhhhhHHh----h----hhh-hhhhhhH---hhcccceEeeccc
Confidence 444554 778888888887654 5999999999865544433 2 222 2222222 1235999876331
Q ss_pred hhhccccCcchhhhHHHHHHHHHH--HHHcccCCcEEEEEcCCCch---HHHHHHHHcCCcce
Q 022698 199 HTVGKEYGHRTVEAAAERMRVLGE--MVRVLKPGGVGVVWDLLHVP---EYVRRLQELKMEDI 256 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~~~~~---~~~~~l~~~gf~~~ 256 (293)
.+....++.. +...|++|..++-.+....+ +..+.+.+.|...+
T Consensus 68 --------------~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 68 --------------DDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp --------------HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred --------------chhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 1244566676 77888887777664444333 45556666774433
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.47 E-value=11 Score=33.12 Aligned_cols=116 Identities=18% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHH--HHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR--TTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F---- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~--~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 184 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+..+.. ..+...+.....+ .++.++.+|+.+.. +
T Consensus 55 ~k~vlITG-as~gIG~~~a~~l~~~G--~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 55 GRKALITG-ADSGIGRATAIAFAREG--ADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred CCEEEEec-CCCcHHHHHHHHHHHcC--CEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHH
Confidence 45788888 57778889998887764 57777765433 2222333333333 34778889987632 1
Q ss_pred -CCCcccEEEecchhhhhcccc---Ccchhhh-----HHHHHHHHHHHHHcccCCcEEEEE
Q 022698 185 -GDNYFDVVVSAAFFHTVGKEY---GHRTVEA-----AAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 185 -~~~~fD~Iv~~~~~~~~~~~~---~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
.-++.|++|.|.......... ..+.... ......+++.+.+.++++|.++++
T Consensus 130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 114689999886543211000 0000000 001123556666777888887774
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.40 E-value=5.5 Score=35.72 Aligned_cols=96 Identities=13% Similarity=0.017 Sum_probs=54.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+||=+||| .++..+.+.......+.+++++|.++..++.+++ .+. ... .+ ++. ....+|+|+
T Consensus 162 ~~g~~VlV~G~G--~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~--~~--~~~-~~~g~d~vi 227 (341)
T cd08237 162 KDRNVIGVWGDG--NLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYL--ID--DIP-EDLAVDHAF 227 (341)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eee--hh--hhh-hccCCcEEE
Confidence 467899989874 4554433322211113589999999987777653 221 111 11 111 112489888
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
-.-.-. .....+....+.|++||+++++..
T Consensus 228 D~~G~~---------------~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 228 ECVGGR---------------GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ECCCCC---------------ccHHHHHHHHHhCcCCcEEEEEee
Confidence 532200 012456777889999999988654
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.34 E-value=13 Score=31.97 Aligned_cols=79 Identities=16% Similarity=0.011 Sum_probs=50.5
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.|+++ +.++..+++.+.+.| .+|+.++.+....+.+.+..... +.+.++.+|+.+.. +
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G--~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREG--AELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCC--CEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHh
Confidence 46788889887 488888888887764 58888887743222232222221 22567788987632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-+++|++|.|..+.
T Consensus 81 ~~g~iD~linnAg~~ 95 (262)
T PRK07984 81 VWPKFDGFVHSIGFA 95 (262)
T ss_pred hcCCCCEEEECCccC
Confidence 125689999987653
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.17 E-value=11 Score=29.35 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=64.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+.+|+-+|+ |.++..++..+...+ ..+++.+|.+++..+...+...... +.....|..+. -...|+|++
T Consensus 18 ~~~~i~iiG~--G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~Dvvi~ 87 (155)
T cd01065 18 KGKKVLILGA--GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL---LAEADLIIN 87 (155)
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc---cccCCEEEe
Confidence 4578999988 567777877776543 3589999999876655444332211 11122232221 246899998
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-chHHHHHHHHcCCcce
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH-VPEYVRRLQELKMEDI 256 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~l~~~gf~~~ 256 (293)
.-+....+.+.. .+ . ...+++|..++-+.... ..++.+.+++.|...+
T Consensus 88 ~~~~~~~~~~~~--~~----~--------~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v 136 (155)
T cd01065 88 TTPVGMKPGDEL--PL----P--------PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTI 136 (155)
T ss_pred CcCCCCCCCCCC--CC----C--------HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCcee
Confidence 755443210000 00 0 11256766555443321 1267777888886544
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=88.15 E-value=2.2 Score=37.64 Aligned_cols=89 Identities=19% Similarity=0.146 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 115 TVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
++.++|=+|||. |..+..+++.. | ...+.++|.++..++.+.+. . + .|..+. ....+|+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~---G-~~~v~~~~~~~~rl~~a~~~----~------~--i~~~~~--~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA---G-GSPPAVWETNPRRRDGATGY----E------V--LDPEKD--PRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc---C-CceEEEeCCCHHHHHhhhhc----c------c--cChhhc--cCCCCCEEE
Confidence 456788887653 33444444433 2 23577889888766555421 1 1 111110 123589988
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
-.-.- ...+..+.+.|+++|+++++...
T Consensus 206 d~~G~------------------~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 206 DASGD------------------PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred ECCCC------------------HHHHHHHHHhhhcCcEEEEEeec
Confidence 64221 13456677899999999986643
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.08 E-value=5.1 Score=34.20 Aligned_cols=81 Identities=19% Similarity=0.126 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHH-HHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRT-TLSTLRTAKMEGVQEYVTAREGDVRSLP-----F---- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~-l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 184 (293)
.+.+||=.|+ +|.++..+++++.+.+ +.+|+.++.+++. ++.+.+.....+ ..++.++.+|+.+.. .
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~~g-g~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLKNA-PARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHhcC-CCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence 4557888887 6778888998876653 3689999988764 555544444433 135889999987532 1
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
..+..|+++.+...
T Consensus 84 ~~g~id~li~~ag~ 97 (253)
T PRK07904 84 AGGDVDVAIVAFGL 97 (253)
T ss_pred hcCCCCEEEEeeec
Confidence 12579988876543
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.02 E-value=6.3 Score=36.71 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+.+|+=+|+|. ++..++..+... +.+|+.+|+++.....+. ..|. .+ .++.+. ....|+|+.
T Consensus 211 ~Gk~VlViG~G~--IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~----~~G~----~v--~~l~ea---l~~aDVVI~ 273 (425)
T PRK05476 211 AGKVVVVAGYGD--VGKGCAQRLRGL--GARVIVTEVDPICALQAA----MDGF----RV--MTMEEA---AELGDIFVT 273 (425)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhC--CCEEEEEcCCchhhHHHH----hcCC----Ee--cCHHHH---HhCCCEEEE
Confidence 577999999864 666666665544 469999999986433222 1231 21 122221 135899987
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHH-HHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEeeeecc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLG-EMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
... .. ..+. .....+|+|++++.+.....+--...|.+.+.+..++...+..
T Consensus 274 aTG-----------------~~-~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~ 326 (425)
T PRK05476 274 ATG-----------------NK-DVITAEHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQVDE 326 (425)
T ss_pred CCC-----------------CH-HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcCcceeecCCCceE
Confidence 521 11 2333 5677899999999887766554444555555444444444433
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.89 E-value=5.5 Score=39.58 Aligned_cols=77 Identities=25% Similarity=0.165 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+++|.++..++.+.+..... .++.++.+|+.+.. + .
T Consensus 422 gk~vLVTGa-sggIG~~la~~L~~~G--a~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 422 GKVALVTGA-AGGIGKATAKRLAAEG--ACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCc--CEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 456776664 6778888888887664 58999999998766555443322 34788889987532 1 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.+.+|+|+.+...
T Consensus 496 ~g~iDvvI~~AG~ 508 (681)
T PRK08324 496 FGGVDIVVSNAGI 508 (681)
T ss_pred cCCCCEEEECCCC
Confidence 2468999988654
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=13 Score=31.49 Aligned_cols=78 Identities=18% Similarity=0.081 Sum_probs=54.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC----------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF----------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 185 (293)
++++|=. .|+|.++..+++.+.+.| .+|+.++.++...+.+.+.....+ .++.++.+|+.+... .
T Consensus 7 ~~~vlIt-Gasg~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 7 GKTAVVT-GAASGIGKEIALELARAG--AAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CCEEEEE-CCCChHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567744 567889999999887764 589999999977766665554443 347888999876320 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.++.|+|+.+...
T Consensus 82 ~~~~d~vi~~ag~ 94 (262)
T PRK13394 82 FGSVDILVSNAGI 94 (262)
T ss_pred cCCCCEEEECCcc
Confidence 1458999987654
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.52 E-value=15 Score=31.19 Aligned_cols=75 Identities=25% Similarity=0.161 Sum_probs=51.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+|.+...++...+.. + .++.++.+|+.+.. + .
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEG--ARVVIADIKPARARLAALEI---G--PAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHHh---C--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 45677676 67788999999987764 69999999887665443322 1 34778888987532 0 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|+++.+...
T Consensus 78 ~~~id~li~~ag~ 90 (257)
T PRK07067 78 FGGIDILFNNAAL 90 (257)
T ss_pred cCCCCEEEECCCc
Confidence 1468999987554
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.52 E-value=7.7 Score=34.62 Aligned_cols=94 Identities=15% Similarity=0.002 Sum_probs=54.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
...++.+||=.|+| .++..+.+..... ++++++++.+++.++.+++ .|.. .++ |..+. ..+.+|+
T Consensus 162 ~~~~g~~VlV~G~g--~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~---~vi--~~~~~--~~~~~d~ 226 (329)
T TIGR02822 162 SLPPGGRLGLYGFG--GSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAA---SAG--GAYDT--PPEPLDA 226 (329)
T ss_pred CCCCCCEEEEEcCC--HHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCc---eec--ccccc--CcccceE
Confidence 35677899999874 3443333322222 4689999999887665554 3432 111 11111 1235787
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
++.... . ...+....+.|++||+++++..
T Consensus 227 ~i~~~~-----------------~-~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAP-----------------A-GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCC-----------------c-HHHHHHHHHhhCCCcEEEEEec
Confidence 654221 1 1356777889999999988664
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=87.49 E-value=16 Score=33.50 Aligned_cols=122 Identities=17% Similarity=0.178 Sum_probs=70.1
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcC---CCcEEEEEeC----CHHHHHHHHHH----HHhcCCCCceE
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTG---SLGRVVGLDC----KKRTTLSTLRT----AKMEGVQEYVT 173 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~---~~~~v~~vDi----s~~~l~~a~~~----~~~~~~~~~v~ 173 (293)
.+++.+.. ...-+|+|+|.|.|.-=..|.+.+..+. +.-++|+++. +...++.+.++ ++..|+. .+
T Consensus 101 aIleA~~g-~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fe 177 (374)
T PF03514_consen 101 AILEAFEG-ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FE 177 (374)
T ss_pred HHHHHhcc-CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EE
Confidence 45555543 3456899999999998888888776542 3469999999 77777766665 3445654 55
Q ss_pred EEEc---CCCCCC---CCCCcccEEEec--chhhhhccccCcchhhhHHHH-HHHHHHHHHcccCCcEEEE
Q 022698 174 AREG---DVRSLP---FGDNYFDVVVSA--AFFHTVGKEYGHRTVEAAAER-MRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 174 ~~~~---d~~~~~---~~~~~fD~Iv~~--~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~ 235 (293)
|... ++.++. +.-.+=+.++.| .-+|++..+.... .++ ..+++ ..+.|+|.-.+++
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~-----~~~~~~~L~-~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGAL-----ENPRDAFLR-VIRSLNPKVVVLV 242 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccc-----cchHHHHHH-HHHhcCCCEEEEE
Confidence 5553 333321 111112344444 4456665222111 122 34554 4457899866555
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.41 E-value=9.6 Score=33.70 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=50.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CC--CCcccEE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FG--DNYFDVV 192 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~~fD~I 192 (293)
+++||=.| |+|.++..+++.+.+.| .+|+++..++.............+...++.++.+|+.+.. .. -...|+|
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRG--YTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCC--CEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 46788777 68999999999887664 5787777665533322222221222245888999988743 10 1247998
Q ss_pred Eecchh
Q 022698 193 VSAAFF 198 (293)
Q Consensus 193 v~~~~~ 198 (293)
+.+...
T Consensus 82 ih~A~~ 87 (325)
T PLN02989 82 FHTASP 87 (325)
T ss_pred EEeCCC
Confidence 887653
|
|
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=87.23 E-value=0.4 Score=41.02 Aligned_cols=115 Identities=18% Similarity=0.301 Sum_probs=64.6
Q ss_pred EEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-----CCCCCCcccEEEe
Q 022698 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-----LPFGDNYFDVVVS 194 (293)
Q Consensus 120 LDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~fD~Iv~ 194 (293)
|..-.||=.++..+++. .-+.+.+|+.+...+..++++... .++++...|..+ +| +..+=-+|+.
T Consensus 62 l~~YPGSP~ia~~llR~------qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allP-P~~rRglVLI 131 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE------QDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLP-PPERRGLVLI 131 (245)
T ss_dssp --EEE-HHHHHHHHS-T------TSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S--TTS-EEEEE
T ss_pred cCcCCCCHHHHHHhCCc------cceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCC-CCCCCeEEEE
Confidence 67888888887777654 248999999999988888776653 569999999865 23 3445679999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHccc--CCcEEEEEcCC-C---chHHHHHHHHcCCcce
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLK--PGGVGVVWDLL-H---VPEYVRRLQELKMEDI 256 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~-~---~~~~~~~l~~~gf~~~ 256 (293)
.|+|..-. +..++.+.+...+| |.|+++++-.. . ...+.+.+++.|...+
T Consensus 132 DPpYE~~~------------dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~~ 187 (245)
T PF04378_consen 132 DPPYEQKD------------DYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIKKV 187 (245)
T ss_dssp -----STT------------HHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE-
T ss_pred CCCCCCch------------HHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCCCe
Confidence 99998765 66666666665555 57877774432 2 2345566666666543
|
; PDB: 2OO3_A. |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=87.19 E-value=5.2 Score=37.00 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=58.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.+.+.......+.+|+=+|+|. ++..+++.+... +++|+++|.++.....+. ..|. .+ .+..+
T Consensus 181 ~~~~i~r~t~~~l~Gk~VvViG~G~--IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~----~~G~----~v--~~lee 246 (406)
T TIGR00936 181 TIDGILRATNLLIAGKTVVVAGYGW--CGKGIAMRARGM--GARVIVTEVDPIRALEAA----MDGF----RV--MTMEE 246 (406)
T ss_pred HHHHHHHhcCCCCCcCEEEEECCCH--HHHHHHHHHhhC--cCEEEEEeCChhhHHHHH----hcCC----Ee--CCHHH
Confidence 3444444332224577999999877 444455444433 469999999886432222 2232 22 12222
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHH-HHHHHcccCCcEEEEEcCCC
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVL-GEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~ 240 (293)
. . ...|+|++... . ...+ .+....+|+|++++.+....
T Consensus 247 a-l--~~aDVVItaTG-----------------~-~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 247 A-A--KIGDIFITATG-----------------N-KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred H-H--hcCCEEEECCC-----------------C-HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 1 1 34699887432 1 1233 34667899999999876654
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.87 E-value=5.5 Score=35.24 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=54.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
.+|.=||+| .++..++..+...|...+|+++|.+++.++.+++ .+.. .. ...+..+. -...|+|+..-
T Consensus 7 ~~I~IIG~G--~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~--~~-~~~~~~~~---~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIG--LIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLG--DR-VTTSAAEA---VKGADLVILCV 74 (307)
T ss_pred cEEEEEeeC--HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCC--ce-ecCCHHHH---hcCCCEEEECC
Confidence 468888765 5666666665544322489999999987665542 2321 11 11222111 13579999875
Q ss_pred hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+... ...+++++...+++|+.++.+.
T Consensus 75 p~~~---------------~~~v~~~l~~~l~~~~iv~dvg 100 (307)
T PRK07502 75 PVGA---------------SGAVAAEIAPHLKPGAIVTDVG 100 (307)
T ss_pred CHHH---------------HHHHHHHHHhhCCCCCEEEeCc
Confidence 5432 2355667777888988665443
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=86.85 E-value=4.3 Score=39.67 Aligned_cols=110 Identities=13% Similarity=0.044 Sum_probs=67.7
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEEE
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVVV 193 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~Iv 193 (293)
+|+= ||-|.++..+++.+.+. +..++.+|.+++.++.+++ .+ ..++.+|..+.. ..-.+.|.++
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vv 469 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAAGAEKAEAIV 469 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhcCCccCCEEE
Confidence 4544 55677888888887655 3589999999998877654 23 467889987642 1224688888
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
+.-.= ++....+-...+.+.|...++.-. ..++..+.+++.|-+.+
T Consensus 470 ~~~~d---------------~~~n~~i~~~~r~~~p~~~IiaRa--~~~~~~~~L~~~Ga~~v 515 (601)
T PRK03659 470 ITCNE---------------PEDTMKIVELCQQHFPHLHILARA--RGRVEAHELLQAGVTQF 515 (601)
T ss_pred EEeCC---------------HHHHHHHHHHHHHHCCCCeEEEEe--CCHHHHHHHHhCCCCEE
Confidence 75221 012223333445577877776522 24455566666665544
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.64 E-value=16 Score=32.29 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=52.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
+++||=.| |+|.++..+++.+.+.| .+|++++.+++..+.+.+... ++.++.+|+.+.. . .
T Consensus 26 ~k~vlITG-asggIG~~~a~~L~~~G--~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 26 GKTAIVTG-GYSGLGLETTRALAQAG--AHVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHhc
Confidence 46788777 46778999999887764 589999998876554433322 2678889987642 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
.++.|++|.|..+.
T Consensus 97 ~~~iD~li~nAg~~ 110 (315)
T PRK06196 97 GRRIDILINNAGVM 110 (315)
T ss_pred CCCCCEEEECCCCC
Confidence 25689999987643
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.38 E-value=12 Score=31.03 Aligned_cols=71 Identities=18% Similarity=0.092 Sum_probs=47.2
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--------CCCCcc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--------FGDNYF 189 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 189 (293)
++|=.|+ +|.++..+++.+.+.| .+|++++.++...+...+ . .++.+..+|+.+.. ...+++
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~----~---~~~~~~~~D~~d~~~~~~~~~~~~~~~i 72 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLERG--WQVTATVRGPQQDTALQA----L---PGVHIEKLDMNDPASLDQLLQRLQGQRF 72 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHhCC--CEEEEEeCCCcchHHHHh----c---cccceEEcCCCCHHHHHHHHHHhhcCCC
Confidence 4665554 7888888988888764 599999988765433221 1 23567778876532 123579
Q ss_pred cEEEecchh
Q 022698 190 DVVVSAAFF 198 (293)
Q Consensus 190 D~Iv~~~~~ 198 (293)
|+|+.+...
T Consensus 73 d~vi~~ag~ 81 (225)
T PRK08177 73 DLLFVNAGI 81 (225)
T ss_pred CEEEEcCcc
Confidence 999988654
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=86.36 E-value=10 Score=33.30 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=62.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+.+|+=+|. |.++..+++.+...| .+|+.++.++...+.+ ...+. ... +..++...-..+|+|+.
T Consensus 150 ~gk~v~IiG~--G~iG~avA~~L~~~G--~~V~v~~R~~~~~~~~----~~~g~----~~~--~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 150 HGSNVMVLGF--GRTGMTIARTFSALG--ARVFVGARSSADLARI----TEMGL----IPF--PLNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCCEEEEEcC--hHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH----HHCCC----eee--cHHHHHHHhccCCEEEE
Confidence 4578999987 557788888776553 5999999998754333 22222 111 11111111246899998
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCch-HHHHHHHHcCCcce
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP-EYVRRLQELKMEDI 256 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~l~~~gf~~~ 256 (293)
.-|...+. ++....++++..++=+...+.. ++ +..++.|.+.+
T Consensus 216 t~P~~ii~------------------~~~l~~~k~~aliIDlas~Pg~tdf-~~Ak~~G~~a~ 259 (287)
T TIGR02853 216 TIPALVLT------------------ADVLSKLPKHAVIIDLASKPGGTDF-EYAKKRGIKAL 259 (287)
T ss_pred CCChHHhC------------------HHHHhcCCCCeEEEEeCcCCCCCCH-HHHHHCCCEEE
Confidence 75544322 2234567886554433333322 44 67788886644
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=86.26 E-value=19 Score=30.37 Aligned_cols=77 Identities=23% Similarity=0.182 Sum_probs=53.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----CC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----GD 186 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 186 (293)
+++|=.| |+|.++..+++.+.+.| .+|+.++.++..++.........+ .++.++.+|+.+.. + ..
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDG--FKVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTF 77 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3566666 56778889998887664 589999998877766655554433 34778899987632 1 12
Q ss_pred CcccEEEecchh
Q 022698 187 NYFDVVVSAAFF 198 (293)
Q Consensus 187 ~~fD~Iv~~~~~ 198 (293)
++.|.++.+..+
T Consensus 78 ~~id~vi~~ag~ 89 (256)
T PRK08643 78 GDLNVVVNNAGV 89 (256)
T ss_pred CCCCEEEECCCC
Confidence 468999988654
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.10 E-value=17 Score=31.88 Aligned_cols=82 Identities=23% Similarity=0.167 Sum_probs=60.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------CC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------FG 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 185 (293)
++.|+==||.+| ++.+++.++.+.| .+++-+-.....++...+.++..+..+++..+++|+.+.. ..
T Consensus 12 ~kvVvITGASsG-IG~~lA~~la~~G--~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 12 GKVVLITGASSG-IGEALAYELAKRG--AKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHhCC--CceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 557777787666 6778888887764 6778888888888877666555544336899999998753 12
Q ss_pred CCcccEEEecchhhh
Q 022698 186 DNYFDVVVSAAFFHT 200 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~ 200 (293)
-+..|+.|.|..+..
T Consensus 89 fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISL 103 (282)
T ss_pred cCCCCEEEecCcccc
Confidence 367999999977655
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.09 E-value=5 Score=34.32 Aligned_cols=78 Identities=18% Similarity=0.113 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-----G----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~----- 185 (293)
++++|=.| |+|.++.++++.+.+.| .+|++++.+++.++...+.....+ .++.++.+|+.+... .
T Consensus 10 ~~~vlItG-asggIG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 10 DQVAVVTG-AGRGLGAAIALAFAEAG--ADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56788887 57789999998887764 699999999887665555544333 347888899876321 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-+++|+|+.+...
T Consensus 85 ~~~id~vi~~Ag~ 97 (263)
T PRK07814 85 FGRLDIVVNNVGG 97 (263)
T ss_pred cCCCCEEEECCCC
Confidence 1468999987543
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.02 E-value=15 Score=32.08 Aligned_cols=117 Identities=13% Similarity=0.045 Sum_probs=65.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCH--HHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKK--RTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F---- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~--~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 184 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+. ...+...+.....+ .++.++.+|+.+.. +
T Consensus 49 ~k~vlITGa-s~gIG~aia~~L~~~G--~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 123 (294)
T PRK07985 49 DRKALVTGG-DSGIGRAAAIAYAREG--ADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAH 123 (294)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCC--CEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence 457888884 6778888988887764 5888876543 33333433333333 34778889987632 0
Q ss_pred -CCCcccEEEecchhhh-hccccCcchhhh-------HHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 185 -GDNYFDVVVSAAFFHT-VGKEYGHRTVEA-------AAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 -~~~~fD~Iv~~~~~~~-~~~~~~~~~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.-++.|+++.|..... ............ ...+..+++.+.+.++.+|.++++.
T Consensus 124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 1246899998755321 110000000000 0011235566666777788877743
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.78 E-value=9.5 Score=34.98 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=62.0
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEEcCCCCCCCCCCcccEEEec
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY-VTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
.+|+=++=.-|.++..++..-+ +.+--|--+-...+.|++.+++... +.+. +..+ +++ +.+|+|+.-
T Consensus 46 ~~~~i~nd~fGal~~~l~~~~~--------~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~-~~~-~~~d~vl~~ 113 (378)
T PRK15001 46 GPVLILNDAFGALSCALAEHKP--------YSIGDSYISELATRENLRLNGIDESSVKFL--DSTA-DYP-QQPGVVLIK 113 (378)
T ss_pred CCEEEEcCchhHHHHHHHhCCC--------CeeehHHHHHHHHHHHHHHcCCCcccceee--cccc-ccc-CCCCEEEEE
Confidence 3799999999999999985321 2222233344466788888887532 4443 2222 222 448999875
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-|-.- ......+..+.+.|.||+.++..+
T Consensus 114 ~PK~~-------------~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 114 VPKTL-------------ALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred eCCCH-------------HHHHHHHHHHHhhCCCCCEEEEEE
Confidence 44221 245567888999999999987644
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.69 E-value=3.8 Score=36.96 Aligned_cols=100 Identities=16% Similarity=0.081 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEcCC--CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc-CCCC-C-CCCC
Q 022698 112 DWSTVKTALDIGCG--RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-DVRS-L-PFGD 186 (293)
Q Consensus 112 ~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~-~-~~~~ 186 (293)
...++.+||=.|++ .|..+..+++.. +.++++++.+++..+.+++. .|...-+..... +..+ . ....
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~-----G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~ 226 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLH-----GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYFP 226 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHCC
Confidence 45677889888872 455555555543 46899999988766555422 233211111101 1111 0 0112
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+.+|+|+-.-. ...+..+.+.|++||+++++..
T Consensus 227 ~gvD~v~d~vG-------------------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 227 EGIDIYFDNVG-------------------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CCcEEEEECCC-------------------HHHHHHHHHHhccCCEEEEECc
Confidence 35898885421 1345667789999999988654
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=85.67 E-value=4.7 Score=39.01 Aligned_cols=106 Identities=11% Similarity=0.056 Sum_probs=66.1
Q ss_pred CCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEEEecchhh
Q 022698 124 CGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVVVSAAFFH 199 (293)
Q Consensus 124 ~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~Iv~~~~~~ 199 (293)
||.|..+..+++.+.+.+ .+++.+|.+++.++.+++ .+ ...+.+|..+.. ..-++.|.+++.-.=
T Consensus 423 ~G~G~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~- 491 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAG--IPLVVIETSRTRVDELRE----RG----IRAVLGNAANEEIMQLAHLDCARWLLLTIPN- 491 (558)
T ss_pred ECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH----CC----CeEEEcCCCCHHHHHhcCccccCEEEEEcCC-
Confidence 455778888998887653 589999999997766653 23 578889988732 122468876653110
Q ss_pred hhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 200 TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
++....+-...+...|+..++... ..++..+.+++.|-..+
T Consensus 492 --------------~~~~~~iv~~~~~~~~~~~iiar~--~~~~~~~~l~~~Gad~v 532 (558)
T PRK10669 492 --------------GYEAGEIVASAREKRPDIEIIARA--HYDDEVAYITERGANQV 532 (558)
T ss_pred --------------hHHHHHHHHHHHHHCCCCeEEEEE--CCHHHHHHHHHcCCCEE
Confidence 011112222334556776665532 35677778888887654
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=85.60 E-value=2 Score=39.32 Aligned_cols=43 Identities=12% Similarity=-0.028 Sum_probs=31.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHH
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTL 160 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~ 160 (293)
++.++.+||-|.+ .|+.++.++..-| .+|++||+||..+...+
T Consensus 32 ~i~~~d~vl~ItS-aG~N~L~yL~~~P-----~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 32 NIGPDDRVLTITS-AGCNALDYLLAGP-----KRIHAVDLNPAQNALLE 74 (380)
T ss_pred CCCCCCeEEEEcc-CCchHHHHHhcCC-----ceEEEEeCCHHHHHHHH
Confidence 4678889999954 5666666655543 59999999998766554
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.44 E-value=15 Score=35.28 Aligned_cols=79 Identities=22% Similarity=0.168 Sum_probs=56.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
+.++|=+| |+|.++..+++.+.+.| .+|+.++.+...++...+..+..+ .++.++.+|+.+.. . .
T Consensus 315 ~~~~lv~G-~s~giG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 315 GKLVVVTG-AGSGIGRETALAFAREG--AEVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred CCEEEEEC-CcCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 35677666 47889999999988764 589999999887776655554444 34888999997642 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
.++.|+++.|....
T Consensus 390 ~g~id~lv~~Ag~~ 403 (582)
T PRK05855 390 HGVPDIVVNNAGIG 403 (582)
T ss_pred cCCCcEEEECCccC
Confidence 24689999986653
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=85.21 E-value=9.4 Score=33.71 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+.+++=+|+| ..+..++..+... +++|+++|.++...+.++ ..+. .+.. ..++...-..+|+|+.
T Consensus 151 ~g~kvlViG~G--~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~----~~G~----~~~~--~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 151 HGSNVLVLGFG--RTGMTLARTLKAL--GANVTVGARKSAHLARIT----EMGL----SPFH--LSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HcCC----eeec--HHHHHHHhCCCCEEEE
Confidence 46799999985 4777777766655 469999999987544433 2332 2221 1111111246899997
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.-|... +-++..+.++||+.++-+.
T Consensus 217 t~p~~~------------------i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 217 TIPALV------------------LTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CCChhh------------------hhHHHHHcCCCCcEEEEEc
Confidence 533211 2234556788988776443
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.20 E-value=23 Score=30.98 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=52.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++.+++.++...+.... ..++..+.+|+.+.. . .
T Consensus 9 gk~vlItG-as~gIG~~ia~~l~~~G--~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 9 GKVVVVTG-AARGIGAELARRLHARG--AKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45788776 56678888888887664 6999999998876655444321 223556668887632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 83 ~g~id~vI~nAG~~ 96 (296)
T PRK05872 83 FGGIDVVVANAGIA 96 (296)
T ss_pred cCCCCEEEECCCcC
Confidence 25789999987653
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=85.16 E-value=13 Score=33.06 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=50.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CC--CCcccEE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FG--DNYFDVV 192 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~~fD~I 192 (293)
+++||=.| |+|.++..+++.+.+.+...+|+++|.++.......+.. . ..++.++.+|+.+.. .. -..+|+|
T Consensus 4 ~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~-~~~~~~v~~Dl~d~~~l~~~~~~iD~V 78 (324)
T TIGR03589 4 NKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---P-APCLRFFIGDVRDKERLTRALRGVDYV 78 (324)
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---C-CCcEEEEEccCCCHHHHHHHHhcCCEE
Confidence 45788666 479999999998876543358999987655332222111 1 134888999988742 10 1348999
Q ss_pred Eecchhh
Q 022698 193 VSAAFFH 199 (293)
Q Consensus 193 v~~~~~~ 199 (293)
+.+....
T Consensus 79 ih~Ag~~ 85 (324)
T TIGR03589 79 VHAAALK 85 (324)
T ss_pred EECcccC
Confidence 9875543
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.01 E-value=2.5 Score=35.48 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
..+.+.++.....+ ...-|.+||.|.|.++..+...- .++...+++++..+.-.+...+... .+......|+
T Consensus 36 ~~lT~KIvK~A~~~-~~~~v~eIgPgpggitR~il~a~-----~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~ 107 (326)
T KOG0821|consen 36 LRLTDKIVKKAGNL-TNAYVYEIGPGPGGITRSILNAD-----VARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDV 107 (326)
T ss_pred hHHHHHHHHhcccc-ccceeEEecCCCCchhHHHHhcc-----hhheeeeeeccccChHHHHHhhcCC--cceEEecccc
Confidence 44666777666543 35679999999999999988652 2488899999888777766655443 3477777877
Q ss_pred CC
Q 022698 180 RS 181 (293)
Q Consensus 180 ~~ 181 (293)
..
T Consensus 108 LR 109 (326)
T KOG0821|consen 108 LR 109 (326)
T ss_pred ce
Confidence 54
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=84.98 E-value=20 Score=30.95 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=66.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEEcCCCC-C-------CCC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--VQEYVTAREGDVRS-L-------PFG 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~-~-------~~~ 185 (293)
...|+.+|||-=.-...+ +. +.+.+++=+|. |+.++.-++.+...+ ...+..++..|+.+ + .+.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl----~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd 155 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRL----PW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFD 155 (260)
T ss_pred CcEEEEeCCccccHHHhc----CC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCC
Confidence 346999999987765433 21 11245555554 445555555555433 23568899999862 1 011
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
....-++++-.++.+++ .+....+++.+.+...||+.+++
T Consensus 156 ~~~ptl~i~EGvl~YL~----------~~~v~~ll~~i~~~~~~gs~l~~ 195 (260)
T TIGR00027 156 PTAPTAWLWEGLLMYLT----------EEAVDALLAFIAELSAPGSRLAF 195 (260)
T ss_pred CCCCeeeeecchhhcCC----------HHHHHHHHHHHHHhCCCCcEEEE
Confidence 23445777777777776 44778899999988889998887
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=84.92 E-value=7.1 Score=34.54 Aligned_cols=100 Identities=10% Similarity=0.019 Sum_probs=56.1
Q ss_pred CCCCCCCeEEEEcC--CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc-CCCCC--CCC
Q 022698 111 NDWSTVKTALDIGC--GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-DVRSL--PFG 185 (293)
Q Consensus 111 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~~--~~~ 185 (293)
....++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++ .|...-+..... +..+. ...
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-----G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~ 204 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK-----GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKAS 204 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhC
Confidence 34567788988874 3455555555443 4689999999886666543 343210111110 11110 011
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.+.+|+|+-.-. . ..+....++|+++|+++.+..
T Consensus 205 ~~gvdvv~d~~G-----------------~--~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 205 PDGYDCYFDNVG-----------------G--EFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred CCCeEEEEECCC-----------------H--HHHHHHHHHhCcCcEEEEecc
Confidence 245898885311 1 234667889999999998653
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=84.88 E-value=2.1 Score=37.02 Aligned_cols=98 Identities=22% Similarity=0.250 Sum_probs=52.5
Q ss_pred hhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHH
Q 022698 137 FKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER 216 (293)
Q Consensus 137 ~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~ 216 (293)
+.+.|+..+|+|+|.++..++.+.+. |+.+ -...+... . ..+|+||..-|.. ..
T Consensus 5 L~~~g~~~~v~g~d~~~~~~~~a~~~----g~~~---~~~~~~~~--~--~~~DlvvlavP~~---------------~~ 58 (258)
T PF02153_consen 5 LRKAGPDVEVYGYDRDPETLEAALEL----GIID---EASTDIEA--V--EDADLVVLAVPVS---------------AI 58 (258)
T ss_dssp HHHTTTTSEEEEE-SSHHHHHHHHHT----TSSS---EEESHHHH--G--GCCSEEEE-S-HH---------------HH
T ss_pred HHhCCCCeEEEEEeCCHHHHHHHHHC----CCee---eccCCHhH--h--cCCCEEEEcCCHH---------------HH
Confidence 33344457999999999976665433 4422 11222111 1 2469999876654 44
Q ss_pred HHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcC---CcceEEeee
Q 022698 217 MRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELK---MEDIRVSER 261 (293)
Q Consensus 217 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~g---f~~~~~~~~ 261 (293)
..+++++...+++|+.+.=+..... ...+.+++.+ ...+-.+..
T Consensus 59 ~~~l~~~~~~~~~~~iv~Dv~SvK~-~~~~~~~~~~~~~~~~v~~HPM 105 (258)
T PF02153_consen 59 EDVLEEIAPYLKPGAIVTDVGSVKA-PIVEAMERLLPEGVRFVGGHPM 105 (258)
T ss_dssp HHHHHHHHCGS-TTSEEEE--S-CH-HHHHHHHHHHTSSGEEEEEEES
T ss_pred HHHHHHhhhhcCCCcEEEEeCCCCH-HHHHHHHHhcCcccceeecCCC
Confidence 5888999999999887765443332 3444444433 344444443
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=84.78 E-value=7.8 Score=35.14 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=55.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-----CCC
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-----PFG 185 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~ 185 (293)
...++.+||=.|+| .++..+.+..... ++ +|+++|.++..++.+++ .|.. .++..+-.+. ...
T Consensus 188 ~i~~g~~VlV~G~G--~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~ 256 (371)
T cd08281 188 GVRPGQSVAVVGLG--GVGLSALLGAVAA--GASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELT 256 (371)
T ss_pred CCCCCCEEEEECCC--HHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHh
Confidence 35567788888864 4554443333322 34 69999999987776654 2321 1221111110 011
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
.+.+|+|+-... ....+....+.|+++|.++.+...
T Consensus 257 ~~g~d~vid~~G------------------~~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 257 GGGVDYAFEMAG------------------SVPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred CCCCCEEEECCC------------------ChHHHHHHHHHHhcCCEEEEEccC
Confidence 235899885421 013455667789999999886643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=84.75 E-value=18 Score=33.75 Aligned_cols=70 Identities=16% Similarity=0.063 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDV 191 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~ 191 (293)
..+|+=+|+ |.++..+++.+... +..++.+|.+++.++.+++.. ..+.++.+|..+.. ..-.++|.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKE--GYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence 467887777 77888888888765 358999999999777655432 12567888886532 12246888
Q ss_pred EEec
Q 022698 192 VVSA 195 (293)
Q Consensus 192 Iv~~ 195 (293)
|++.
T Consensus 301 vi~~ 304 (453)
T PRK09496 301 FIAL 304 (453)
T ss_pred EEEC
Confidence 8874
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=84.67 E-value=2.5 Score=32.16 Aligned_cols=66 Identities=20% Similarity=0.136 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC-CCcccEEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG-DNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Iv 193 (293)
+..+|+|+|-|.=.-....+ .+. +..|+++|+.+. ++. .| +.++.-|+.+.... =...|+|.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L---~~~--G~dV~~tDi~~~-------~a~-~g----~~~v~DDif~P~l~iY~~a~lIY 75 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKL---KER--GFDVIATDINPR-------KAP-EG----VNFVVDDIFNPNLEIYEGADLIY 75 (127)
T ss_dssp -SSEEEEET-TT--HHHHHH---HHH--S-EEEEE-SS-S------------S----TTEE---SSS--HHHHTTEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHH---HHc--CCcEEEEECccc-------ccc-cC----cceeeecccCCCHHHhcCCcEEE
Confidence 34599999998854433333 322 479999999987 222 33 57888999873321 13589999
Q ss_pred ecch
Q 022698 194 SAAF 197 (293)
Q Consensus 194 ~~~~ 197 (293)
|..|
T Consensus 76 SiRP 79 (127)
T PF03686_consen 76 SIRP 79 (127)
T ss_dssp EES-
T ss_pred EeCC
Confidence 8644
|
; PDB: 2K4M_A. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=84.67 E-value=23 Score=31.45 Aligned_cols=113 Identities=18% Similarity=0.139 Sum_probs=53.7
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHH-HHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTL-STLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~-~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
+|.=||+| ..+..++..+...+...++..+|++++..+ .+..................|..+ + ...|+|+...
T Consensus 2 kI~IIGaG--~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~--l--~~aDiViita 75 (308)
T cd05292 2 KVAIVGAG--FVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD--C--KGADVVVITA 75 (308)
T ss_pred EEEEECCC--HHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH--h--CCCCEEEEcc
Confidence 46678875 455555555444432358999999987554 233222211111123333344322 1 3479999865
Q ss_pred hhhhhccccCcchhhh-HHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 197 FFHTVGKEYGHRTVEA-AAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.....+.....+.... ..-..++.+++.+ ..|+|++++..
T Consensus 76 ~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~t 116 (308)
T cd05292 76 GANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVT 116 (308)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEec
Confidence 5432221100111110 0112233444444 55889888864
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=84.63 E-value=10 Score=34.17 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=55.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-C-C-CCCC
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-L-P-FGDN 187 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~-~-~~~~ 187 (293)
...++.+||=.|+ |.++..+.+..... +. +|+++|.++..++.+++ .|...-+.....+..+ + . ....
T Consensus 173 ~~~~g~~VlV~G~--g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 173 GVKRGDSVAVIGC--GGVGDAAIAGAALA--GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCC
Confidence 3566788998876 44554444333322 34 59999999987776643 3321101111111100 0 0 1123
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
.+|+|+-.-. . ...+....+.+++||+++++...
T Consensus 245 g~d~vid~~g-----------------~-~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 245 GADVVIDAVG-----------------R-PETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred CCCEEEECCC-----------------C-HHHHHHHHHHhccCCEEEEECCC
Confidence 5898885321 1 13455667789999999987653
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.55 E-value=6.7 Score=32.97 Aligned_cols=78 Identities=15% Similarity=0.120 Sum_probs=54.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
+.++|=.|+ +|.++..+++.+.+.| .+++.++.++..++.+.+.....+ .++.++..|+.+.. . .
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~~G--~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQKG--AKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 457887775 6778888888887664 589999999877666555544433 34778888976531 0 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-+++|.|+.+...
T Consensus 80 ~~~id~vi~~ag~ 92 (253)
T PRK08217 80 FGQLNGLINNAGI 92 (253)
T ss_pred cCCCCEEEECCCc
Confidence 1468999988653
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.31 E-value=24 Score=29.86 Aligned_cols=79 Identities=16% Similarity=0.032 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-CCCcc
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-GDNYF 189 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~f 189 (293)
++++|=.|+ +|.++..+++.+.+.| ++|++++.+++.++.+.+.+.... ..++.++..|+.+.. . .-++.
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEG--CHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 467888885 5668888888887654 699999999887766555444321 134778888887532 1 12578
Q ss_pred cEEEecchh
Q 022698 190 DVVVSAAFF 198 (293)
Q Consensus 190 D~Iv~~~~~ 198 (293)
|.+|.+...
T Consensus 83 d~lv~~ag~ 91 (259)
T PRK06125 83 DILVNNAGA 91 (259)
T ss_pred CEEEECCCC
Confidence 999988654
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=84.16 E-value=3.1 Score=38.02 Aligned_cols=102 Identities=18% Similarity=0.100 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|+=+|+| ..+...++.+... +++|+++|.++..++.+.... + ..+.....+...+.-.-..+|+|+.
T Consensus 166 ~~~~VlViGaG--~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 166 EPGDVTIIGGG--VVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCceEEEEcCC--HHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEE
Confidence 34578888775 5555555555444 358999999987665544332 1 1121111111111101135899997
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
..+....+ .+..+-++..+.++||+.++-+.
T Consensus 237 a~~~~g~~------------~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 237 AVLIPGAK------------APKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred ccccCCCC------------CCcCcCHHHHhcCCCCCEEEEEe
Confidence 54321111 11112244456678998776543
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.00 E-value=8.4 Score=32.58 Aligned_cols=77 Identities=18% Similarity=0.085 Sum_probs=52.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVV 192 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~I 192 (293)
++||=.|+ +|.++..+++.+.+.| .++++++.++...+.........+ .++.++.+|+.+.. ....+.|+|
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~v 77 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKG--HNVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVL 77 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEE
Confidence 36777775 6778888888887654 689999988776655554444433 23788889987632 112478999
Q ss_pred Eecchh
Q 022698 193 VSAAFF 198 (293)
Q Consensus 193 v~~~~~ 198 (293)
+.|..+
T Consensus 78 i~~ag~ 83 (257)
T PRK09291 78 LNNAGI 83 (257)
T ss_pred EECCCc
Confidence 988554
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.93 E-value=26 Score=29.81 Aligned_cols=78 Identities=15% Similarity=0.039 Sum_probs=53.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC---------CC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF---------GD 186 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~ 186 (293)
+.++|=.|+ +|.++..+++.+.+.| .+|++++.+++.++....... . ..++.++.+|+.+..- ..
T Consensus 5 ~~~vlItG~-s~~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 5 DKRVLLTGA-SGGIGQALAEALAAAG--ARLLLVGRNAEKLEALAARLP-Y--PGRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHh-c--CCceEEEEccCCCHHHHHHHHHHHHhc
Confidence 446777765 5678888888887664 689999999887665554431 2 2458888999876320 02
Q ss_pred CcccEEEecchhh
Q 022698 187 NYFDVVVSAAFFH 199 (293)
Q Consensus 187 ~~fD~Iv~~~~~~ 199 (293)
++.|.|+.+..+.
T Consensus 79 ~~id~lv~~ag~~ 91 (263)
T PRK09072 79 GGINVLINNAGVN 91 (263)
T ss_pred CCCCEEEECCCCC
Confidence 4689999886543
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=83.86 E-value=7.3 Score=36.72 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=61.5
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.+++.....-.+++|+=+|+|. ++..+++.+... +.+|+++|.++.....+ ...+. .+. ++.+
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~--IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA----~~~G~----~vv--~leE 305 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGD--VGKGCAAAMKAA--GARVIVTEIDPICALQA----LMEGY----QVL--TLED 305 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCH--HHHHHHHHHHHC--CCEEEEEeCCchhhHHH----HhcCC----eec--cHHH
Confidence 3444554443334578899999874 666666665433 46999999998633222 22232 111 2222
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
. . ...|+|++...- ...+..+....+|+||+++.+....
T Consensus 306 a-l--~~ADVVI~tTGt-----------------~~vI~~e~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 306 V-V--SEADIFVTTTGN-----------------KDIIMVDHMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred H-H--hhCCEEEECCCC-----------------ccchHHHHHhcCCCCCEEEEcCCCC
Confidence 1 1 347999974321 1223356677999999999987643
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.36 E-value=23 Score=30.04 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=49.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|-.|+ +|.++..+++.+.+.| .+|+.++.+.. +...+.....+ .++.++..|+.+.. + .
T Consensus 8 ~k~~lItGa-s~gIG~aia~~l~~~G--~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 8 GKVAIITGC-NTGLGQGMAIGLAKAG--ADIVGVGVAEA--PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCC--CEEEEecCchH--HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 567887775 6678889998887764 68888887542 22222333333 35788899987632 1 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|...
T Consensus 81 ~g~iD~lv~~ag~ 93 (251)
T PRK12481 81 MGHIDILINNAGI 93 (251)
T ss_pred cCCCCEEEECCCc
Confidence 2568999988654
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.25 E-value=22 Score=33.10 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=59.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH---hcCC---------CCceEEEEcCCCCCCC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK---MEGV---------QEYVTAREGDVRSLPF 184 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~---~~~~---------~~~v~~~~~d~~~~~~ 184 (293)
.+|.=||.| ..+..++..+.+.| .+|+++|+++..++..+.... ..++ .++..+. .+
T Consensus 4 ~kI~VIGlG--~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~-~~------ 72 (415)
T PRK11064 4 ETISVIGLG--YIGLPTAAAFASRQ--KQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT-TT------ 72 (415)
T ss_pred cEEEEECcc--hhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee-cc------
Confidence 356666654 45555666665543 599999999997775321100 0000 0111111 11
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc---CCCchHHHHHHHHc
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD---LLHVPEYVRRLQEL 251 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~l~~~ 251 (293)
....|+|+..-+-.. ..+ + ..+.......++.+.+.|++|..++... .....+....+.+.
T Consensus 73 -~~~aDvvii~vptp~-~~~-~---~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 73 -PEPADAFLIAVPTPF-KGD-H---EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred -cccCCEEEEEcCCCC-CCC-C---CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 124688886533211 000 1 1111245566788888898877766632 22334455555554
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.24 E-value=8 Score=32.72 Aligned_cols=78 Identities=18% Similarity=0.041 Sum_probs=54.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++.++..++.........+ .++.++..|+.+.. . .
T Consensus 5 ~k~vlItG-a~~~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 5 GKVVVVSG-VGPGLGRTLAVRAARAG--ADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 45788666 47788999998887764 699999999887665555544333 34788999987532 0 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|.|+.+...
T Consensus 80 ~g~~d~vi~~ag~ 92 (258)
T PRK07890 80 FGRVDALVNNAFR 92 (258)
T ss_pred cCCccEEEECCcc
Confidence 1468999988654
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.16 E-value=28 Score=29.65 Aligned_cols=80 Identities=21% Similarity=0.102 Sum_probs=55.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=.|++ |.++..+++++.+.| .+++.++.++..++...+.....+ .++.++.+|+.+.. +
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G--~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAG--ATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEK 83 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 34578878765 567788888877664 689999999887776666655443 34788899987532 1
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|.++.+..+.
T Consensus 84 ~~~~id~li~~ag~~ 98 (265)
T PRK07097 84 EVGVIDILVNNAGII 98 (265)
T ss_pred hCCCCCEEEECCCCC
Confidence 115689999886653
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=83.07 E-value=6.1 Score=34.80 Aligned_cols=96 Identities=14% Similarity=0.014 Sum_probs=55.4
Q ss_pred CCCCCCCeEEEEcC--CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-----C
Q 022698 111 NDWSTVKTALDIGC--GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-----P 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~ 183 (293)
....++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++ .|.. .++..+-.+. .
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-----G~~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~ 206 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK-----GCKVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKE 206 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHH
Confidence 34566778887774 3344555455443 4689999998886666544 3432 1221111111 0
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
...+.+|+|+..-. ...+....+.|+++|.++.+.
T Consensus 207 ~~~~gvd~vld~~g-------------------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 207 AAPDGIDCYFDNVG-------------------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred HCCCCcEEEEECCC-------------------HHHHHHHHHhhccCCEEEEEc
Confidence 11245898885311 134567788999999998754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.99 E-value=23 Score=29.81 Aligned_cols=78 Identities=21% Similarity=0.141 Sum_probs=54.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
+++||=.| |+|.++..+++++...| .+|++++.++...+.........+ .++.++.+|+.+.. + .
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEG--AKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 34677555 57889999999887664 589999999887766555544433 34788889987532 0 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.+..|+|+.+...
T Consensus 79 ~~~~d~vi~~a~~ 91 (258)
T PRK12429 79 FGGVDILVNNAGI 91 (258)
T ss_pred cCCCCEEEECCCC
Confidence 1468999987654
|
|
| >TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component | Back alignment and domain information |
|---|
Probab=82.87 E-value=3.6 Score=29.65 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=36.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
.+|| +.||+|..+..++.. .++.++.+|+. +++...+..+.+.....+|+|+..|
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k----------------------~~~~~~~~gi~--~~v~a~~~~~~~~~~~~~Dvill~p 58 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK----------------------MNKAAEEYGVP--VKIAAGSYGAAGEKLDDADVVLLAP 58 (95)
T ss_pred cEEE-EECCCchhHHHHHHH----------------------HHHHHHHCCCc--EEEEEecHHHHHhhcCCCCEEEECc
Confidence 4566 779999766554433 34445566664 6777777655432234689999876
Q ss_pred hhhh
Q 022698 197 FFHT 200 (293)
Q Consensus 197 ~~~~ 200 (293)
-+.+
T Consensus 59 qi~~ 62 (95)
T TIGR00853 59 QVAY 62 (95)
T ss_pred hHHH
Confidence 5543
|
Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=82.82 E-value=34 Score=30.46 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=42.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHH-HHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTL-STLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~-~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.+.+|.=||+|. .+..++..+...+-..++..+|++++.++ .+...........++.....|..++ ...|+||
T Consensus 5 ~~~ki~iiGaG~--vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~----~~adivI 78 (315)
T PRK00066 5 QHNKVVLVGDGA--VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDC----KDADLVV 78 (315)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHh----CCCCEEE
Confidence 346899999854 55555444433332348999999887543 3333322221112345544443332 3479998
Q ss_pred ecch
Q 022698 194 SAAF 197 (293)
Q Consensus 194 ~~~~ 197 (293)
...-
T Consensus 79 itag 82 (315)
T PRK00066 79 ITAG 82 (315)
T ss_pred EecC
Confidence 7543
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.77 E-value=7.4 Score=34.89 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=56.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+..+..+ .++.++..|+.+.. . .
T Consensus 7 ~k~vlITGA-s~GIG~aia~~la~~G--~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 7 GAVVVITGA-SSGIGQATAEAFARRG--ARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCEEEEcCC-CCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 456776665 6778888888887764 689999999998887776665554 34778888887532 0 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.+++|++|.|...
T Consensus 82 ~g~iD~lVnnAG~ 94 (330)
T PRK06139 82 GGRIDVWVNNVGV 94 (330)
T ss_pred cCCCCEEEECCCc
Confidence 2578999998654
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=82.75 E-value=35 Score=30.43 Aligned_cols=116 Identities=14% Similarity=0.070 Sum_probs=56.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHH-HHHHHHHhcCCCCceEEEE-cCCCCCCCCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTL-STLRTAKMEGVQEYVTARE-GDVRSLPFGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~-~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~I 192 (293)
+..+|.=||+ |..+..++..+...+-..+++.+|++++..+ .+..............+.. .|..++ ...|+|
T Consensus 2 ~~~Ki~IiGa--G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~----~~adiv 75 (312)
T cd05293 2 PRNKVTVVGV--GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT----ANSKVV 75 (312)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh----CCCCEE
Confidence 3457888997 5566555555444343468999999886443 3333322221111123343 444432 236999
Q ss_pred EecchhhhhccccCcchhhhH-HHHHHHHHHHHHcccCCcEEEEEc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAA-AERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+...-....+.+...+.+... .-..++.+.+.+. .|+|+++++.
T Consensus 76 vitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs 120 (312)
T cd05293 76 IVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVS 120 (312)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEcc
Confidence 874322111111111111100 0112344444444 7899988765
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.70 E-value=28 Score=29.41 Aligned_cols=115 Identities=18% Similarity=0.154 Sum_probs=62.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC----HHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C--
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK----KRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis----~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-- 184 (293)
++++|=.| |+|.++..+++.+.+.| .+++.++.+ .+..+...+.....+ .++.++..|+.+.. +
T Consensus 8 ~k~vlItG-a~~gIG~~~a~~l~~~G--~~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~ 82 (257)
T PRK12744 8 GKVVLIAG-GAKNLGGLIARDLAAQG--AKAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDD 82 (257)
T ss_pred CcEEEEEC-CCchHHHHHHHHHHHCC--CcEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHH
Confidence 45788777 46679999999887664 466666533 233333333333222 34788899987532 0
Q ss_pred ---CCCcccEEEecchhhhhccccCcch--hh-----hHHHHHHHHHHHHHcccCCcEEEE
Q 022698 185 ---GDNYFDVVVSAAFFHTVGKEYGHRT--VE-----AAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 185 ---~~~~fD~Iv~~~~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.-++.|+++.+.............. .. ....+..+++.+.+.++++|.+++
T Consensus 83 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 83 AKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 1246899998865422111000000 00 001122356666677777776554
|
|
| >COG4121 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.67 E-value=14 Score=31.81 Aligned_cols=143 Identities=13% Similarity=0.019 Sum_probs=84.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcC--------CCcEEEEEeCCHHHHHHHHHHH-----------------------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTG--------SLGRVVGLDCKKRTTLSTLRTA----------------------- 163 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~--------~~~~v~~vDis~~~l~~a~~~~----------------------- 163 (293)
....|+|+|-|+|...+.+.+..+... ....+++++.+|..-..+....
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 445799999999999888877665422 1246777776653322211110
Q ss_pred ---HhcCCCCceEEEEcCCCCC-CCCCC---cccEEEecchhhhhccccCcchhhhHHHH----HHHHHHHHHcccCCcE
Q 022698 164 ---KMEGVQEYVTAREGDVRSL-PFGDN---YFDVVVSAAFFHTVGKEYGHRTVEAAAER----MRVLGEMVRVLKPGGV 232 (293)
Q Consensus 164 ---~~~~~~~~v~~~~~d~~~~-~~~~~---~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~LkpgG~ 232 (293)
...+ .-...+..+|+.+. |..+. ++|+.+....- +..+| .+++..+++..+|||.
T Consensus 138 ~r~~~~g-~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFs-------------P~kNP~mW~~e~l~~~a~~~~~~~~ 203 (252)
T COG4121 138 AAAVRHG-LLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFR-------------PVKNPEMWEDELLNLMARIPYRDPT 203 (252)
T ss_pred HHhhhcc-hheeeeeeeehhhcCCcccccccCccEEecCCcc-------------ccCChhhccHHHHHHHHhhcCCCCc
Confidence 0111 12345666776553 21122 57777754221 11133 4688999999999999
Q ss_pred EEEEcCCCchHHHHHHHHcCCcceEEeeeeccceecceeeeeecC
Q 022698 233 GVVWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 233 l~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
+.- +...--+++-+.++||+..+. .++..++.+..+.++
T Consensus 204 l~t--~ssA~~vRr~L~~aGF~v~~r----~g~grKRem~~a~~~ 242 (252)
T COG4121 204 LAT--FAAAIAVRRRLEQAGFTVEKR----TGRGKKRELLRGVKI 242 (252)
T ss_pred eec--hHHHHHHHHHHHHcCceeeec----CCccccccchhhhcc
Confidence 854 333456889999999986543 444444456666654
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=82.47 E-value=18 Score=31.20 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=56.9
Q ss_pred CCCCCeEEEEcCCCCh---HH-HHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCc
Q 022698 113 WSTVKTALDIGCGRGI---LL-NAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNY 188 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~---~~-~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 188 (293)
.+...|||-+|+|+-. -+ ..|.+-+|. ++-++-.|+.+- . ++.-..+.+|-..+. ++.+
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~---~ailvDnDi~d~--------v-----SDa~~~~~~Dc~t~~-~~~k 121 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPE---DAILVDNDIRDY--------V-----SDADQSIVGDCRTYM-PPDK 121 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-T---T-EEEEEESS----------B------SSSEEEES-GGGEE-ESS-
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCC---CcEEEecchhhh--------c-----cccCCceeccccccC-CCCc
Confidence 3557899999999832 22 334444554 567888888654 1 122356678877754 3578
Q ss_pred ccEEEecch---hhhhccc-cCcchhhhHHHHHHHHHHHHHcccCCcEEEE--EcCCCchHHHHHHHHc
Q 022698 189 FDVVVSAAF---FHTVGKE-YGHRTVEAAAERMRVLGEMVRVLKPGGVGVV--WDLLHVPEYVRRLQEL 251 (293)
Q Consensus 189 fD~Iv~~~~---~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~--~~~~~~~~~~~~l~~~ 251 (293)
||+|+|.-- ......+ ...++ -..-+..-+...|+-||.+.+ .+.....+..+++..-
T Consensus 122 ~DlIiSDmYd~~~k~~~~~n~~~~~-----fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~F 185 (299)
T PF06460_consen 122 FDLIISDMYDGRTKNCDGENNSKEG-----FFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGYF 185 (299)
T ss_dssp EEEEEE----TTS-SS-S------T-----HHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTTE
T ss_pred ccEEEEecccccccccccccCCccc-----cHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhhc
Confidence 999998632 1111100 00011 112344556678999999887 5666667777776543
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=82.42 E-value=27 Score=29.28 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=50.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++++.+.| .+|+.++.++. +.+.+.....+ .++.++..|+.+.. + .
T Consensus 5 ~k~vlItGa-s~gIG~~ia~~l~~~G--~~vi~~~r~~~--~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 5 GKVALVTGA-NTGLGQGIAVGLAEAG--ADIVGAGRSEP--SETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEcCchH--HHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 467888887 4668889998888764 58999987652 22333333322 34788899987632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
.++.|.+|.+....
T Consensus 78 ~~~~d~li~~ag~~ 91 (248)
T TIGR01832 78 FGHIDILVNNAGII 91 (248)
T ss_pred cCCCCEEEECCCCC
Confidence 14689999886543
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.29 E-value=7.6 Score=32.74 Aligned_cols=80 Identities=14% Similarity=0.063 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------C
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------F 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 184 (293)
+++++|=.| |+|.++..+++.+.+.| .+|++++.++...+...+.+...+. .++.++..|+.... .
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARHG--ATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHH
Confidence 466888888 57889999998887764 5999999998777665555544332 34667777775211 0
Q ss_pred --CCCcccEEEecchh
Q 022698 185 --GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 --~~~~fD~Iv~~~~~ 198 (293)
..++.|.|+.+...
T Consensus 87 ~~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 87 EEQFGRLDGVLHNAGL 102 (247)
T ss_pred HHHhCCCCEEEECCcc
Confidence 12468999987543
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.29 E-value=8.7 Score=36.87 Aligned_cols=86 Identities=21% Similarity=0.143 Sum_probs=66.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CCCCcc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FGDNYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~f 189 (293)
.+++||=-| |+|.++..+++++-+.+ ..++..+|.++..+....+.+...-...++.+.-+|+++.. +.+.+.
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~-p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFN-PKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcC-CCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence 345666555 77999999999887655 37999999999999988888776422345889999998853 345679
Q ss_pred cEEEecchhhhhc
Q 022698 190 DVVVSAAFFHTVG 202 (293)
Q Consensus 190 D~Iv~~~~~~~~~ 202 (293)
|+|+-...+-|+|
T Consensus 327 d~VfHAAA~KHVP 339 (588)
T COG1086 327 DIVFHAAALKHVP 339 (588)
T ss_pred ceEEEhhhhccCc
Confidence 9999988887776
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=82.16 E-value=7.9 Score=34.15 Aligned_cols=108 Identities=17% Similarity=0.076 Sum_probs=58.9
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchh
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFF 198 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~ 198 (293)
|-=||+ |..+..++..+.+. +.+|++.|.+++..+.+.+ .+.. . ..+..++.......|+|++.-+-
T Consensus 3 Ig~IGl--G~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~----~g~~---~--~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 3 LGLIGL--GRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKE----DRTT---G--VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred EEEEcc--hHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----cCCc---c--cCCHHHHHhhcCCCCEEEEEcCc
Confidence 444665 56677777776654 3589999999987665543 2211 1 11222211011245888876433
Q ss_pred hhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---CchHHHHHHHHcCCc
Q 022698 199 HTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---HVPEYVRRLQELKME 254 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~l~~~gf~ 254 (293)
. ....+++++...|++|-.++-..-. ...+..+.+++.|..
T Consensus 70 ~---------------~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 70 G---------------IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred h---------------HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 2 2345667788888887544332222 223344456666754
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=81.98 E-value=20 Score=35.21 Aligned_cols=111 Identities=16% Similarity=0.096 Sum_probs=67.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVV 192 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~I 192 (293)
.+|+=+|+ |.++..+++.+.+. +.+++.+|.+++.++.+++ .+ ...+.+|..+.. ..-.+.|.+
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 46766665 55777777777654 3589999999998877754 23 467889987743 122468888
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
++.-. +++....+-...+.+.|+-.++.-. ...+....+++.|-+.+
T Consensus 469 vv~~~---------------d~~~n~~i~~~ar~~~p~~~iiaRa--~d~~~~~~L~~~Gad~v 515 (621)
T PRK03562 469 INAID---------------DPQTSLQLVELVKEHFPHLQIIARA--RDVDHYIRLRQAGVEKP 515 (621)
T ss_pred EEEeC---------------CHHHHHHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHCCCCEE
Confidence 87421 0122223333445566776655522 23455666667766544
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=81.72 E-value=11 Score=32.82 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=50.6
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecch
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAF 197 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~ 197 (293)
+|.=||+ |.++..++..+.+. +.+|+++|.+++.++.+.+. +. +.....+. + .-...|+|+..-|
T Consensus 2 ~I~IIG~--G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~-~---~~~~aDlVilavp 66 (279)
T PRK07417 2 KIGIVGL--GLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIER----GL---VDEASTDL-S---LLKDCDLVILALP 66 (279)
T ss_pred eEEEEee--cHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHC----CC---cccccCCH-h---HhcCCCEEEEcCC
Confidence 3555664 56666676666544 35899999999877665432 22 11111111 1 1235799998755
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEE
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVG 233 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 233 (293)
.. ....+++++...++++..+
T Consensus 67 ~~---------------~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 IG---------------LLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HH---------------HHHHHHHHHHHhCCCCcEE
Confidence 43 2335677888888877544
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.54 E-value=12 Score=31.25 Aligned_cols=79 Identities=22% Similarity=0.151 Sum_probs=52.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---C--------
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---F-------- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~-------- 184 (293)
++++|=.| |+|.++..+++.+.+.| .+|++++.++..++...+.+...+. ..+.+...|+.+.. .
T Consensus 6 ~k~vlItG-~sggiG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 6 DKTILVTG-ASQGLGEQVAKAYAAAG--ATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHcC--CEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecccchHHHHHHHHHHH
Confidence 45788888 57788889998887664 5899999999877665555443321 23556667764311 0
Q ss_pred --CCCcccEEEecchh
Q 022698 185 --GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 --~~~~fD~Iv~~~~~ 198 (293)
..+..|.|+.+...
T Consensus 82 ~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 82 EATQGKLDGIVHCAGY 97 (239)
T ss_pred HHhCCCCCEEEEeccc
Confidence 01468999987653
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.45 E-value=28 Score=29.76 Aligned_cols=73 Identities=21% Similarity=0.079 Sum_probs=49.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+. +.+|++++.+++.++... .. ++.++.+|+.+.. + .
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~~--G~~V~~~~r~~~~l~~~~----~~----~~~~~~~Dv~~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAAQ--GYTVYGAARRVDKMEDLA----SL----GVHPLSLDVTDEASIKAAVDTIIAE 71 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----hC----CCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 35677677 4667899999888765 469999999887554322 11 2677888887632 1 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
.+..|++|.+..+.
T Consensus 72 ~~~id~li~~ag~~ 85 (273)
T PRK06182 72 EGRIDVLVNNAGYG 85 (273)
T ss_pred cCCCCEEEECCCcC
Confidence 24689999986654
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=81.40 E-value=11 Score=33.84 Aligned_cols=102 Identities=21% Similarity=0.185 Sum_probs=58.9
Q ss_pred CCCCCCCeEEEEcCCC--ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC--CCC-
Q 022698 111 NDWSTVKTALDIGCGR--GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL--PFG- 185 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~--G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~- 185 (293)
.+..++.+||=.|+.. |.+++.|++.+. ..++++--|++-.+. ++..|...-+.+...|+.+- ...
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G-----~~~v~~~~s~~k~~~----~~~lGAd~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG-----ATVVAVVSSSEKLEL----LKELGADHVINYREEDFVEQVRELTG 208 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcC-----CcEEEEecCHHHHHH----HHhcCCCEEEcCCcccHHHHHHHHcC
Confidence 3456788999888433 555666665542 366666666654443 33444322233333333221 122
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
...+|+|+..- -...+.+....|+++|+++.+....
T Consensus 209 g~gvDvv~D~v-------------------G~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 209 GKGVDVVLDTV-------------------GGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCCceEEEECC-------------------CHHHHHHHHHHhccCCEEEEEecCC
Confidence 23699999641 2345566778999999999876644
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.38 E-value=27 Score=29.04 Aligned_cols=79 Identities=28% Similarity=0.259 Sum_probs=53.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEE-eCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGL-DCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~v-Dis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+++.+ +.++...+.........+ .++.++..|+.+.. ..
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g--~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEG--AKVVIAYDINEEAAQELLEEIKEEG--GDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 34677776 57889999988877653 588888 888876665555444332 34888999987632 10
Q ss_pred -CCcccEEEecchhh
Q 022698 186 -DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~ 199 (293)
-+++|.|+.+....
T Consensus 80 ~~~~id~vi~~ag~~ 94 (247)
T PRK05565 80 KFGKIDILVNNAGIS 94 (247)
T ss_pred HhCCCCEEEECCCcC
Confidence 13689999886543
|
|
| >COG4353 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.27 E-value=2.6 Score=33.17 Aligned_cols=68 Identities=13% Similarity=0.012 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcccCCcEEEEEcCCC--------------chHHHHHHHHcCCcceEEeeeeccceecceeeeeecCCCC
Q 022698 215 ERMRVLGEMVRVLKPGGVGVVWDLLH--------------VPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQH 280 (293)
Q Consensus 215 ~~~~~l~~~~~~LkpgG~l~~~~~~~--------------~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (293)
--..+++-+++.|.|||.|++--... ....--.|.+.||+-++.+-.-.|.+-..+-+.+.||-..
T Consensus 71 ~E~~l~~~l~~~lspg~~lfVeYv~DrET~~~lqkG~~p~atrLGfeL~k~GftwfkdWY~PEG~mEGg~KlQAeKp~~~ 150 (192)
T COG4353 71 LEVKLYKVLYNFLSPGGKLFVEYVRDRETRYRLQKGKPPVATRLGFELLKAGFTWFKDWYFPEGGMEGGPKLQAEKPINS 150 (192)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEechhHHHHHHcCCCCccchhhHHHHhCcceeeeeeeccCccccccccccccCCCCh
Confidence 34578899999999999998832211 1234455678999999988888887766667777777554
Q ss_pred CC
Q 022698 281 YA 282 (293)
Q Consensus 281 ~~ 282 (293)
--
T Consensus 151 e~ 152 (192)
T COG4353 151 EE 152 (192)
T ss_pred HH
Confidence 33
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.00 E-value=11 Score=31.92 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=52.2
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------CC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------GD 186 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~ 186 (293)
++||=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+..... .++.++.+|+.+.. . ..
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~ 76 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQG--ATLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAH 76 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 46666664 7788999999887764 58999999887765544433222 15888999987632 0 12
Q ss_pred CcccEEEecchh
Q 022698 187 NYFDVVVSAAFF 198 (293)
Q Consensus 187 ~~fD~Iv~~~~~ 198 (293)
++.|+++.|...
T Consensus 77 g~id~lv~~ag~ 88 (257)
T PRK07024 77 GLPDVVIANAGI 88 (257)
T ss_pred CCCCEEEECCCc
Confidence 458999988654
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=80.90 E-value=21 Score=33.73 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=68.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
-.+++|+=+|+|. ++..+++.+... +++|+++|.++.....+. ..| +.+ .++.++ -...|+|+
T Consensus 252 LaGKtVgVIG~G~--IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~----~~G----~~~--~~leel---l~~ADIVI 314 (476)
T PTZ00075 252 IAGKTVVVCGYGD--VGKGCAQALRGF--GARVVVTEIDPICALQAA----MEG----YQV--VTLEDV---VETADIFV 314 (476)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHC--CCEEEEEeCCchhHHHHH----hcC----cee--ccHHHH---HhcCCEEE
Confidence 3577899999875 777777776544 469999998876432222 123 222 222221 13579999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHH-HHHHHcccCCcEEEEEcCCCchHHHHHHHHcC-CcceEEeeee
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVL-GEMVRVLKPGGVGVVWDLLHVPEYVRRLQELK-MEDIRVSERV 262 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~g-f~~~~~~~~~ 262 (293)
+...- . .++ ++....+|||++++-+.....+.....++..+ ....++++..
T Consensus 315 ~atGt-----------------~-~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~~vdv~evep~v 367 (476)
T PTZ00075 315 TATGN-----------------K-DIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYPGIEIVEIKPQV 367 (476)
T ss_pred ECCCc-----------------c-cccCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcCCceeecccCCC
Confidence 76321 1 122 35667899999999887765455556666644 4433343333
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=80.87 E-value=4 Score=36.36 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcE-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-CCCCcc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGR-VVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-FGDNYF 189 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~-v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~f 189 (293)
..++.+||=.|+ |.++..+.+..... +++ ++++|.+++..+.+++. |...-+.....+...+ . .....+
T Consensus 161 ~~~g~~vlV~G~--G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 161 VSGRDTVLVVGA--GPVGLGALMLARAL--GAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCC
Confidence 456778888875 55655554444333 345 99999998876665432 3211011111110000 0 112368
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
|+|+-... ....+....+.|+++|.++++..
T Consensus 233 d~vid~~g------------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 233 DVAIECSG------------------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CEEEECCC------------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 99985421 11234556678999999987654
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.84 E-value=29 Score=29.71 Aligned_cols=75 Identities=19% Similarity=0.082 Sum_probs=50.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----CC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----GD 186 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 186 (293)
+++|=.|+ +|.++..+++++.+.| .+|++++.+++.++...... ..++.++.+|+.+.. + ..
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g--~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARG--DRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRAFAAL 74 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35775554 7889999999887664 58999999887655443321 134788899987632 0 01
Q ss_pred CcccEEEecchhh
Q 022698 187 NYFDVVVSAAFFH 199 (293)
Q Consensus 187 ~~fD~Iv~~~~~~ 199 (293)
++.|+|+.+....
T Consensus 75 ~~id~vi~~ag~~ 87 (276)
T PRK06482 75 GRIDVVVSNAGYG 87 (276)
T ss_pred CCCCEEEECCCCC
Confidence 4579999876543
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.79 E-value=31 Score=30.13 Aligned_cols=42 Identities=17% Similarity=0.007 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA 163 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~ 163 (293)
+|.=||+| ..+..++..+... +.+|+.+|.+++.++.++++.
T Consensus 5 kIaViGaG--~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 5 NVTVAGAG--VLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERI 46 (287)
T ss_pred EEEEECCC--HHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHH
Confidence 56677765 4555555555443 359999999999888877653
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.77 E-value=12 Score=31.17 Aligned_cols=76 Identities=20% Similarity=0.062 Sum_probs=52.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
+.++|=.| |+|.++..+++.+.+. +.+|++++.++.......+..... .++.++.+|+.+.. +.
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAE--GYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHC--CCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45788888 5888999999888765 358999999887666554444322 34788888987531 10
Q ss_pred CCcccEEEecch
Q 022698 186 DNYFDVVVSAAF 197 (293)
Q Consensus 186 ~~~fD~Iv~~~~ 197 (293)
-+.+|.|+.+..
T Consensus 80 ~~~~d~vi~~ag 91 (237)
T PRK07326 80 FGGLDVLIANAG 91 (237)
T ss_pred cCCCCEEEECCC
Confidence 136899997743
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.26 E-value=17 Score=30.46 Aligned_cols=78 Identities=18% Similarity=0.100 Sum_probs=54.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
.+++|=.| |+|.++..+++.+.+.| .+|++++.++...+...+..+..+ .++.++.+|+.+.. +.
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAG--WDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45778777 57889999999887664 599999999876655544444332 35888899987642 11
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|.++.+...
T Consensus 81 ~~~id~lv~~ag~ 93 (241)
T PRK07454 81 FGCPDVLINNAGM 93 (241)
T ss_pred cCCCCEEEECCCc
Confidence 1458999987654
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=80.11 E-value=7.8 Score=34.51 Aligned_cols=100 Identities=15% Similarity=0.074 Sum_probs=55.8
Q ss_pred CCCCCCCeEEEEcC--CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc-CCCC-C-CCC
Q 022698 111 NDWSTVKTALDIGC--GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-DVRS-L-PFG 185 (293)
Q Consensus 111 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~-~-~~~ 185 (293)
....++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++. .|...-+..... +..+ + ...
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-----G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~ 218 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK-----GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF 218 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC
Confidence 34567788998875 2344444444443 46899999888866665542 232111111111 1111 0 011
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.+.+|+|+-... . ..+....+.|+++|.++.+.
T Consensus 219 ~~gvd~v~d~~g-----------------~--~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 219 PNGIDIYFDNVG-----------------G--KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CCCcEEEEECCC-----------------H--HHHHHHHHHhccCcEEEEec
Confidence 246898885311 1 34567788999999998764
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 293 | ||||
| 3dlc_A | 219 | Crystal Structure Of A Putative S-Adenosyl-L-Methio | 1e-04 | ||
| 3sm3_A | 235 | Crystal Structure Of Sam-Dependent Methyltransferas | 3e-04 | ||
| 3bus_A | 273 | Crystal Structure Of Rebm Length = 273 | 7e-04 |
| >pdb|3DLC|A Chain A, Crystal Structure Of A Putative S-Adenosyl-L-Methionine-Dependent Methyltransferase (Mmp1179) From Methanococcus Maripaludis At 1.15 A Resolution Length = 219 | Back alignment and structure |
|
| >pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases Q8puk2_metma From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target Mar262 Length = 235 | Back alignment and structure |
|
| >pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 2e-21
Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 23/167 (13%)
Query: 97 PLHYDMAQRMVGSVNDWSTVK--TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR 154
P++ +A+ ++ + + T +DIG G G L A+A K++ + LD K
Sbjct: 27 PIYPIIAENII----NRFGITAGTCIDIGSGPGALSIALA---KQSD--FSIRALDFSKH 77
Query: 155 TTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAA 214
L+ + + + +GDV ++P DNY D++VS
Sbjct: 78 MNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW------------E 125
Query: 215 ERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSER 261
+ E+ R+LK GG + E + + +
Sbjct: 126 DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKE 172
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 7e-18
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
LD+GCG G ++ +TG + VG+D + ++ K G ++ +
Sbjct: 55 AEVLDVGCGDGYGTYKLS----RTG--YKAVGVDI----SEVMIQKGKERGEGPDLSFIK 104
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236
GD+ SLPF + F+ +++ E +R L E+ RVLK G +
Sbjct: 105 GDLSSLPFENEQFEAIMAINSLEWT------------EEPLRALNEIKRVLKSDGYACIA 152
Query: 237 DL 238
L
Sbjct: 153 IL 154
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 8e-18
Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 17/165 (10%)
Query: 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA 163
R + N+ + KT LD G G + ++ + G + G++ +
Sbjct: 12 YRFLKYCNESNLDKTVLDCGAGGDLPPLSIF---VEDG--YKTYGIEISDLQLKKAENFS 66
Query: 164 KMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEM 223
+ + + +GD+R LPF D V S + K + + E+
Sbjct: 67 RENNFK--LNISKGDIRKLPFKDESMSFVYSYGTIFHMRKN----------DVKEAIDEI 114
Query: 224 VRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVS 268
RVLKPGG+ + L E + +++ + ER + S
Sbjct: 115 KRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHS 159
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 2e-17
Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 20/140 (14%)
Query: 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLR-TA 163
+ + +++ + DIGCG G +A G+V GLD + A
Sbjct: 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLA---GHVT--GQVTGLDFLSGF-IDIFNRNA 89
Query: 164 KMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEM 223
+ G+Q VT G + LPF + D++ S + +G E R L E
Sbjct: 90 RQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFE-------------RGLNEW 136
Query: 224 VRVLKPGGVGVVWDLLHVPE 243
+ LK GG V + +
Sbjct: 137 RKYLKKGGYLAVSECSWFTD 156
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 5e-17
Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 20/149 (13%)
Query: 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTT 156
P + ++ V +N+ + DIGCG G +A G++ G+D
Sbjct: 28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLA---DYVK--GQITGID-LFPDF 81
Query: 157 LSTLRT-AKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAE 215
+ A + V G + +LPF + D++ S + +G E
Sbjct: 82 IEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFE----------- 130
Query: 216 RMRVLGEMVRVLKPGGVGVVWDLLHVPEY 244
R + E + LK GG V +
Sbjct: 131 --RGMNEWSKYLKKGGFIAVSEASWFTSE 157
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 7e-17
Identities = 31/147 (21%), Positives = 49/147 (33%), Gaps = 17/147 (11%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177
L+ GCG G A K + +D + + G++ V +
Sbjct: 40 KVLEAGCGIG----AQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQA 94
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237
++ SLPF D+ FD + + L + +VLKPGG V +
Sbjct: 95 NIFSLPFEDSSFDHIFVCFVLEHL------------QSPEEALKSLKKVLKPGGTITVIE 142
Query: 238 LLHVPEYVRRLQELKMEDIRVSERVTA 264
H Y + +E RV A
Sbjct: 143 GDHGSCYFHPEGKKAIEAWNCLIRVQA 169
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 2e-16
Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 21/176 (11%)
Query: 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTL 160
+A M +V+ L++G G G + + + R + LD L
Sbjct: 25 QIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARG------YRYIALDADAAM-LEVF 77
Query: 161 RTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVL 220
R K+ GV V + D R++P D V+ +H V + +VL
Sbjct: 78 R-QKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLV------------PDWPKVL 124
Query: 221 GEMVRVLKPGG-VGVVWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFR 275
E +RVLKPGG + WD + + V + + +
Sbjct: 125 AEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVE 180
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 4e-16
Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 37/175 (21%)
Query: 93 YSAVPLHYD-MAQRMVGSVNDWSTVKTA----------LDIGCGRGILLNAVATQFKKTG 141
++++ Y+ +G+ + L++G G G L +
Sbjct: 3 FASLAEAYEAWYGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRLPY------ 56
Query: 142 SLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTV 201
+ VG++ + + L + + T +LPF FDVV+ V
Sbjct: 57 --PQKVGVEP----SEAMLAVGRRRAPE--ATWVRAWGEALPFPGESFDVVLLFTTLEFV 108
Query: 202 GKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256
+ RVL E RVL+PGG VV L + + + L + +
Sbjct: 109 ------------EDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGV 151
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 4e-16
Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 18/137 (13%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT-AKMEGVQEYVTARE 176
T LD+G G G L ++ K G G+V +D ++ ++ G++ V +
Sbjct: 40 TVLDVGTGAGFYLPYLS---KMVGEKGKVYAIDVQEEM-VNYAWEKVNKLGLKN-VEVLK 94
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236
+ +P DN D + A FH + +E ++ L E+ RV KP +
Sbjct: 95 SEENKIPLPDNTVDFIFMAFTFHEL------------SEPLKFLEELKRVAKPFAYLAII 142
Query: 237 DLLHVPEYVRRLQELKM 253
D E
Sbjct: 143 DWKKEERDKGPPPEEVY 159
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 5e-16
Identities = 36/145 (24%), Positives = 52/145 (35%), Gaps = 27/145 (18%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTA--KMEGVQEYV 172
LD+ CG G + G VVG+D +S +R A + + V
Sbjct: 40 GKVLDLACGVGGFSFLLE----DYG--FEVVGVD------ISEDMIRKAREYAKSRESNV 87
Query: 173 TAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
GD R L F D FD V+ E +V E+ RVLKP G
Sbjct: 88 EFIVGDARKLSFEDKTFDYVIFIDSIVHFEPL----------ELNQVFKEVRRVLKPSGK 137
Query: 233 GVVWDLLHVPEYVRRLQELKMEDIR 257
+ + E + RL+E + +
Sbjct: 138 -FIMYFTDLRELLPRLKESLVVGQK 161
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 1e-15
Identities = 36/132 (27%), Positives = 49/132 (37%), Gaps = 31/132 (23%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST------LRTAKMEGVQEYVT 173
LD+GCG G +A RV G+ ++S A G+ VT
Sbjct: 66 LDVGCGIGKPAVRLA---TARD--VRVTGI------SISRPQVNQANARATAAGLANRVT 114
Query: 174 AREGDVRSLPFGDNYFDVVVS-AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPF D FD V + + H +R R L EM RVL+PGG
Sbjct: 115 FSYADAMDLPFEDASFDAVWALESLHH-------------MPDRGRALREMARVLRPGGT 161
Query: 233 GVVWDLLHVPEY 244
+ D + +
Sbjct: 162 VAIADFVLLAPV 173
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 2e-15
Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 30/155 (19%)
Query: 96 VPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDC---- 151
+P D+ + + + + LDIGCG G + + + G V G+D
Sbjct: 14 IPSSLDLYPIIHNYLQEDDEI---LDIGCGSGKI----SLELASKG--YSVTGIDINSEA 64
Query: 152 ----KKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGH 207
+ L E+ + SL F D+ FD V
Sbjct: 65 IRLAETAARSPGLNQKTGGKA-EFK---VENASSLSFHDSSFDFAVMQ---------AFL 111
Query: 208 RTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP 242
+V ER R++ E+ RVLKPG + +
Sbjct: 112 TSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNW 146
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 2e-15
Identities = 28/139 (20%), Positives = 44/139 (31%), Gaps = 34/139 (24%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTAKMEGVQEYVTAR 175
++IG G G L +G++ S A+ GV
Sbjct: 50 RGVEIGVGTGRFAVP----------LKIKIGVE------PSERMAEIARKRGV----FVL 89
Query: 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
+G +LP D FD + V + R L E R+LK GG +V
Sbjct: 90 KGTAENLPLKDESFDFALMVTTICFV------------DDPERALKEAYRILKKGGYLIV 137
Query: 236 WDLLHVPEYVRRLQELKME 254
+ R ++ K +
Sbjct: 138 GIVDRESFLGREYEKNKEK 156
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 4e-15
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTAKMEGVQEYVTAREG 177
LD+G G G + ++ G VV +D S L A+ +GV+ V E
Sbjct: 59 LDLGGGTGKW----SLFLQERG--FEVVLVD------PSKEMLEVAREKGVKNVV---EA 103
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237
LPF F+ V++ VE + + E+ RVL P G+ ++
Sbjct: 104 KAEDLPFPSGAFEAVLALGD--------VLSYVE---NKDKAFSEIRRVLVPDGL-LIAT 151
Query: 238 LLHVPEYVRRLQE 250
+ + +++++ E
Sbjct: 152 VDNFYTFLQQMIE 164
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 8e-15
Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 22/141 (15%)
Query: 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLS 158
+ D +V +V + +D GCG G L + + G+D +
Sbjct: 6 NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLM---PLLPEGSKYTGIDS----GET 58
Query: 159 TLRTA--KMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER 216
L A + EGD + D +D+ + AF +
Sbjct: 59 LLAEARELFRLLPYDSEFLEGDATEIELNDK-YDIAICHAFLLHM------------TTP 105
Query: 217 MRVLGEMVRVLKPGGVGVVWD 237
+L +M+ +K GG + ++
Sbjct: 106 ETMLQKMIHSVKKGGKIICFE 126
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 9e-15
Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 25/129 (19%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ---EYVTA 174
LDIG G G A + +G+D T + A + E V
Sbjct: 24 RVLDIGAGAGHTALAFSPYV------QECIGVD----ATKEMVEVASSFAQEKGVENVRF 73
Query: 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
++G SLPF D+ FD++ H ++ + + E+ RVLK G +
Sbjct: 74 QQGTAESLPFPDDSFDIITCRYAAHHF------------SDVRKAVREVARVLKQDGRFL 121
Query: 235 VWDLLHVPE 243
+ D +
Sbjct: 122 LVDHYAPED 130
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 9e-15
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 21/158 (13%)
Query: 89 GNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVG 148
+ A + + LD+G G G + +K G +
Sbjct: 56 QDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLV---RKFG--VSIDC 110
Query: 149 LD-CKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS-AAFFHTVGKEYG 206
L+ + + + G+ + +T + G +P DN +D + S AF H
Sbjct: 111 LNIAPVQNKRNEEYNNQ-AGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLH------- 162
Query: 207 HRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEY 244
+ ++++V E RVLKP GV + D +
Sbjct: 163 ------SPDKLKVFQECARVLKPRGVMAITDPMKEDGI 194
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-14
Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 37/171 (21%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-EGVQEYVTAR 175
+D GCG G + ++ +D + V+E +
Sbjct: 19 GVIVDYGCGNGFYCKYLLEFA------TKLYCIDI----------NVIALKEVKEKFDSV 62
Query: 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
DN D ++ A FH + ++ V+ E+ R+LK G ++
Sbjct: 63 ITLSDPKEIPDNSVDFILFANSFHDM------------DDKQHVISEVKRILKDDGRVII 110
Query: 236 WDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSS--------HIVSFRKPS 278
D + ++M++ + F+V + ++ +
Sbjct: 111 IDWRKENTGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTPYHFGLVLKRKT 161
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 1e-14
Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 42/189 (22%)
Query: 92 FYSAVPLHYDMAQ----RMVGSVNDWSTVK---TALDIGCGRGILLNAVATQFKKTGSLG 144
Y+++ Y + R+V ++ + + DIG G G A+A Q
Sbjct: 4 IYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG------L 57
Query: 145 RVVGLDCKKRTTLST--LRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVG 202
V ++ S + A + V G +L D D V+S H
Sbjct: 58 FVYAVE------PSIVMRQQAVVHP---QVEWFTGYAENLALPDKSVDGVISILAIHHF- 107
Query: 203 KEYGHRTVEAAAERMRVLGEMVRVLKPGG-VGVVWDLLHVP-----EYVRRLQELKMEDI 256
+ + EM R+++ G V + +D+ +Y L E + +
Sbjct: 108 -----------SHLEKSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFL 156
Query: 257 RVSERVTAF 265
+ E++
Sbjct: 157 PLDEQINLL 165
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 2e-14
Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 24/128 (18%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTA-KMEGVQEYVTARE 176
LDIG G G + +K G+ G+D + + + A + +
Sbjct: 60 LDIGSGLGGGCMYIN---EKYGA--HTHGID------ICSNIVNMANERVSGNNKIIFEA 108
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236
D+ + F +N FD++ S + + ++ + + LKP G ++
Sbjct: 109 NDILTKEFPENNFDLIYSRDAILALS----------LENKNKLFQKCYKWLKPTGTLLIT 158
Query: 237 DLLHVPEY 244
D +
Sbjct: 159 DYCATEKE 166
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 4e-14
Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 28/145 (19%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTAKMEGVQEYVTA 174
L+ G G G L N + V G++ S AK E + + +
Sbjct: 47 GNVLEFGVGTGNLTNKLLLAG------RTVYGIE------PSREMRMIAK-EKLPKEFSI 93
Query: 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
EGD S D +VS FH + E+ + + ++L GG V
Sbjct: 94 TEGDFLSFEV-PTSIDTIVSTYAFHHL----------TDDEKNVAIAKYSQLLNKGGKIV 142
Query: 235 VWDLLH--VPEYVRRLQELKMEDIR 257
D + Y + ++ K
Sbjct: 143 FADTIFADQDAYDKTVEAAKQRGFH 167
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 5e-14
Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 17/166 (10%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177
+ CG L A+ ++VG+D R A + +T
Sbjct: 121 VVASVPCGWMSELLALDYSACPGV---QLVGIDYDPEALDGATRLAAGHALAGQITLHRQ 177
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237
D L + +D++ S + A + + LKPGG V
Sbjct: 178 DAWKLDTREG-YDLLTSNGLNIYEPDD---------ARVTELYRRFWQALKPGGALVTSF 227
Query: 238 L----LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQ 279
L P+ +Q + D+++ + V ++ + R +Q
Sbjct: 228 LTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQ 273
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 7e-14
Identities = 39/212 (18%), Positives = 71/212 (33%), Gaps = 35/212 (16%)
Query: 96 VPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRT 155
+P D V + + LD+G G G+L + ++ + +D
Sbjct: 25 IPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE----ATFTLVD----- 75
Query: 156 TLST--LRTAKMEGVQEY-VTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEA 212
+S L AK V E D F + +D+VVSA H + E
Sbjct: 76 -MSEKMLEIAKNRFRGNLKVKYIEADYSKYDF-EEKYDMVVSALSIHHLEDE-------- 125
Query: 213 AAERMRVLGEMVRVLKPGGVGVVWDLLHVP-EYVRRLQELKMEDIRV-----SERVTAFM 266
++ + +LK G+ + DL+H ++ L + E + A
Sbjct: 126 --DKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGY 183
Query: 267 VSSHIVSFRKPSQHY-----AGPGEVRLDWRC 293
S + + +Q AG +V ++
Sbjct: 184 ERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKY 215
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 8e-14
Identities = 38/226 (16%), Positives = 68/226 (30%), Gaps = 60/226 (26%)
Query: 80 SSVCLFFAAGNFFYSAVPLHYDMAQRM---VGSVNDWSTVK---TALDIGCGRGILLNAV 133
S+ L A + D GS T LD+GCG G +
Sbjct: 42 SACKLAAAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLA 101
Query: 134 ATQFKKTGSLGRVVGLD--------CKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL--- 182
+ K G G+V+G+D +K + V +G + +L
Sbjct: 102 S---KLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSN-VRFLKGFIENLATA 157
Query: 183 ---PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG-------- 231
D+ D+V+S + ++ + E+ RVL+ GG
Sbjct: 158 EPEGVPDSSVDIVISNCVCNLS------------TNKLALFKEIHRVLRDGGELYFSDVY 205
Query: 232 ----------------VGVVWDLLHVPEYVRRLQELKMEDIRVSER 261
+ L++ ++ R + E D+R+
Sbjct: 206 ADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVSV 251
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 1e-13
Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 41/164 (25%)
Query: 90 NFF--YSAVPLHYDMAQ---------RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFK 138
+FF YS +P + + +M+ N KT LD+GCG G A
Sbjct: 12 HFFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQ----KTVLDLGCGFGWHCIYAAEHGA 67
Query: 139 KTGSLGRVVGLDCKKRTTLST--LRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196
K +V+G+D LS L AK + V + + + + ++VV+S+
Sbjct: 68 K-----KVLGID------LSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSL 116
Query: 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240
H + A + ++ LK G ++ + H
Sbjct: 117 ALHYI------------ASFDDICKKVYINLKSSGS-FIFSVEH 147
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 1e-13
Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 25/124 (20%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ---EYVT 173
+ LD+ G G + NA A + +VV D T L+ A+ + V
Sbjct: 39 EEVLDVATGGGHVANAFA------PFVKKVVAFD----LTEDILKVARAFIEGNGHQQVE 88
Query: 174 AREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVG 233
+GD +PF D F +V H + E RVLK GG
Sbjct: 89 YVQGDAEQMPFTDERFHIVTCRIAAHHF------------PNPASFVSEAYRVLKKGGQL 136
Query: 234 VVWD 237
++ D
Sbjct: 137 LLVD 140
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 5e-13
Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 25/121 (20%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTAKMEGVQEYVTA 174
+D+GCG G V+GLD LS L A+ G +T
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGAS-----YVLGLD------LSEKMLARARAAGPDTGITY 93
Query: 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
D+ L + FD+ S+ H V + R+ + + L PGG V
Sbjct: 94 ERADLDKLHLPQDSFDLAYSSLALHYV------------EDVARLFRTVHQALSPGGHFV 141
Query: 235 V 235
Sbjct: 142 F 142
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 6e-13
Identities = 27/119 (22%), Positives = 40/119 (33%), Gaps = 27/119 (22%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTAKMEGVQEYVTAREG 177
LD GCG+G + K G V+G D L + AK + + G
Sbjct: 51 LDAGCGQG----RIGGYLSKQG--HDVLGTD------LDPILIDYAKQDFPE--ARWVVG 96
Query: 178 DVRSLPFGDNYFDVVVS-AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
D+ + FD++VS + A R L + R L G V+
Sbjct: 97 DLSVDQISETDFDLIVSAGNVMGFL----------AEDGREPALANIHRALGADGRAVI 145
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 2e-12
Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 35/170 (20%)
Query: 92 FYSAVPLHYD---------MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGS 142
+Y A YD A + + + L++ G G ++
Sbjct: 14 YYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLA----- 68
Query: 143 LGRVVGLDCKKRTTLST--LRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHT 200
RV LD S + A G+ V R+ D+ D +D V A +
Sbjct: 69 -DRVTALD------GSAEMIAEAGRHGLDN-VEFRQQDLFDWTP-DRQWDAVFFAHWLAH 119
Query: 201 VGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQE 250
V + + PGGV D+ + + +
Sbjct: 120 V----------PDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDD 159
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 4e-12
Identities = 33/166 (19%), Positives = 52/166 (31%), Gaps = 18/166 (10%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME---GVQEYVTARE 176
L +GCG L + V +D S++ A M+ +
Sbjct: 47 LVLGCGNSALSYELFLGGFP-----NVTSVD------YSSVVVAAMQACYAHVPQLRWET 95
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTV---GKEYGHRTVEAAAERMRVLGEMVRVLKPGGVG 233
DVR L F FDVV+ + ++ + E +VL E+ RVL PGG
Sbjct: 96 MDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRF 155
Query: 234 VVWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQ 279
+ P + R + H+ K +
Sbjct: 156 ISMTSAA-PHFRTRHYAQAYYGWSLRHATYGSGFHFHLYLMHKGGK 200
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 1e-11
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 20/132 (15%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175
LD+GCG G +A + G V D + + R +E + + + R
Sbjct: 34 GKTLDLGCGNGRNSLYLA-------ANGYDVDAWDKNAMSIANVERIKSIENL-DNLHTR 85
Query: 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
D+ +L F D +D ++S + ++ M R KPGG ++
Sbjct: 86 VVDLNNLTF-DRQYDFILSTVVLM-----FLEA-----KTIPGLIANMQRCTKPGGYNLI 134
Query: 236 WDLLHVPEYVRR 247
+ +Y
Sbjct: 135 VAAMDTADYPCT 146
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-11
Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 32/158 (20%)
Query: 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTL 157
+ + ++ + + + LD+GCG G L +A V+G D
Sbjct: 41 FVWQYGEDLLQLL-NPQPGEFILDLGCGTGQLTEKIAQSG------AEVLGTD------N 87
Query: 158 ST--LRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAE 215
+ + A+ + D R+ D D V S A H V E
Sbjct: 88 AATMIEKARQNYPH--LHFDVADARNFRV-DKPLDAVFSNAMLHWV------------KE 132
Query: 216 RMRVLGEMVRVLKPGGVGV--VWDLLHVPEYVRRLQEL 251
+ + + LK GG V ++ + L
Sbjct: 133 PEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNA 170
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 3e-11
Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 26/120 (21%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTAKMEGVQEYVTAR 175
LD+G G G G ++ GL+ +T + A+ VT
Sbjct: 44 VILDVGSGTG----RWTGHLASLGH--QIEGLE------PATRLVELARQTHPS--VTFH 89
Query: 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
G + L + +++ + E L + ++ GG ++
Sbjct: 90 HGTITDLSDSPKRWAGLLAWYSLIHM----------GPGELPDALVALRMAVEDGGGLLM 139
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 7e-11
Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 30/139 (21%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST------LRTAKMEGVQEYVT 173
+D GCGRG + ++ GS RV G+ TLS R A+ + ++V
Sbjct: 122 VDAGCGRGGSMVMAH---RRFGS--RVEGV------TLSAAQADFGNRRARELRIDDHVR 170
Query: 174 AREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVG 233
+R ++ PF + + + E R LK GG
Sbjct: 171 SRVCNMLDTPFDKGAVTASWN---NESTMYVD----------LHDLFSEHSRFLKVGGRY 217
Query: 234 VVWDLLHVPEYVRRLQELK 252
V P Y + + +
Sbjct: 218 VTITGCWNPRYGQPSKWVS 236
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 1e-10
Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 30/175 (17%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTAKMEGVQEYVTA 174
+D CG G ++ F RV+GLD +S L A E ++
Sbjct: 58 LPLIDFACGNGTQTKFLSQFF------PRVIGLD------VSKSALEIAAKENTAANISY 105
Query: 175 REGDVRSL----PFGDNYFDV-VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKP 229
R D D + FH + +R + + +L
Sbjct: 106 RLLDGLVPEQAAQIHSEIGDANIYMRTGFHHI----------PVEKRELLGQSLRILLGK 155
Query: 230 GGVGVVWDLLHVP-EYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAG 283
G + +L ++ L E + V + I + ++
Sbjct: 156 QGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYFPD 210
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 2e-10
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 30/123 (24%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTA--KMEGVQEYV 172
+ LD+GCG G LL A+A + VG+D + A G
Sbjct: 54 ERVLDLGCGEGWLLRALADRG------IEAVGVD------GDRTLVDAARAAGAGEVHLA 101
Query: 173 TAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
+ + +P G + +D++ + + + +L M +L PGG
Sbjct: 102 SYAQLAEAKVPVGKD-YDLICANFALLH-------------QDIIELLSAMRTLLVPGGA 147
Query: 233 GVV 235
V+
Sbjct: 148 LVI 150
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 3e-10
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 7/119 (5%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177
T +D CG G +A G GRV G D + + +T + + + VT +
Sbjct: 25 TVVDATCGNGNDTAFLA---SLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD 81
Query: 178 DVRS-LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
++ + D V+ + G H ++ L + + +L GG+ V
Sbjct: 82 GHQNMDKYIDCPVKAVMFNLGYLPSGD---HSISTRPETTIQALSKAMELLVTGGIITV 137
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 5e-10
Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 33/151 (21%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK--------MEGV 168
+ +D+GCG+G LL K ++ G+D R+ L A+
Sbjct: 31 RRVIDLGCGQGNLLKI----LLKDSFFEQITGVDVSYRS----LEIAQERLDRLRLPRNQ 82
Query: 169 QEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLK 228
E + +G + + +D + + +
Sbjct: 83 WERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLS----------RLGAFERVLFEFAQ 132
Query: 229 PGGVGVVWDLLHVP--EYVRRLQELKMEDIR 257
P V ++ P EY + L +R
Sbjct: 133 PKIV-----IVTTPNIEYNVKFANLPAGKLR 158
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 6e-10
Identities = 32/179 (17%), Positives = 52/179 (29%), Gaps = 46/179 (25%)
Query: 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK 164
R+ + D GCG L +++ V D
Sbjct: 57 RIARDLRQRPASLVVADFGCGDCRLASSIR---------NPVHCFDLAS----------- 96
Query: 165 MEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV 224
+ VT D+ +P D DV V L E
Sbjct: 97 ---LDPRVTV--CDMAQVPLEDESVDVAVFCLSLM-------------GTNIRDFLEEAN 138
Query: 225 RVLKPGGVGVVWDL----LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQ 279
RVLKPGG+ V ++ V ++R + +L + + + F + F+K
Sbjct: 139 RVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNSHFFL----FDFQKTGP 193
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 1e-09
Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 26/148 (17%)
Query: 85 FFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLG 144
F+ + Y P + SV + L + G G NA G
Sbjct: 5 RFSQSEYVYGTEP------NDFLVSVANQIPQGKILCLAEGEGR--NACF--LASLGY-- 52
Query: 145 RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKE 204
V +D + A+ +GV+ +T + ++ + ++ +VS
Sbjct: 53 EVTAVDQSSVGLAKAKQLAQEKGVK--ITTVQSNLADFDIVADAWEGIVSIFCHLP---- 106
Query: 205 YGHRTVEAAAERMRVLGEMVRVLKPGGV 232
++ R ++ ++ + LKPGGV
Sbjct: 107 --------SSLRQQLYPKVYQGLKPGGV 126
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 2e-09
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 28/140 (20%)
Query: 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTL 157
A+ ++ V V D+GCG G + ++ + G+D
Sbjct: 17 ERTRPARDLLAQV-PLERVLNGYDLGCGPGNSTELLTDRYGV----NVITGID------S 65
Query: 158 ST--LRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAE 215
L A + D+ + D++ + A F V +
Sbjct: 66 DDDMLEKAADRLPN--TNFGKADLATWKP-AQKADLLYANAVFQWV------------PD 110
Query: 216 RMRVLGEMVRVLKPGGVGVV 235
+ VL +++ L+ GGV V
Sbjct: 111 HLAVLSQLMDQLESGGVLAV 130
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 3e-09
Identities = 27/116 (23%), Positives = 37/116 (31%), Gaps = 18/116 (15%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179
LD+G G G +L A G+D T R A+ GV E V D
Sbjct: 41 LDLGSGSGEMLCTWARDHG-----ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 95
Query: 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
+ DV G A E + + LKPGG+ ++
Sbjct: 96 AGYVA-NEKCDVAACVGATWIAG------GFAGAEELLA------QSLKPGGIMLI 138
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 5e-09
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 27/145 (18%)
Query: 96 VPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLD----- 150
+ L+ +V + K +D+GCG G LL+ K S ++ G+D
Sbjct: 11 LNLNQQRLGTVVAVLKS-VNAKKVIDLGCGEGNLLSL----LLKDKSFEQITGVDVSYSV 65
Query: 151 ---CKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGH 207
K R + L E ++ ++ + + + +D + +
Sbjct: 66 LERAKDRLKIDRLP----EMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDEN--- 118
Query: 208 RTVEAAAERMRVLGEMVRVLKPGGV 232
+ +P V
Sbjct: 119 -------RLQAFEKVLFEFTRPQTV 136
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 6e-09
Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 30/149 (20%)
Query: 90 NFFYSAVPLHY--DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLG-RV 146
N Y HY + ++ + K LDIGC G L A+ G RV
Sbjct: 7 NSLYEEKSGHYYNAVNPNLLKHIKKEW--KEVLDIGCSSGALGAAIK-------ENGTRV 57
Query: 147 VGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYG 206
G++ AK + V + + +P+ + FD V+ F
Sbjct: 58 SGIEAFP----EAAEQAKEKLDH--VVLGDIETMDMPYEEEQFDCVI---FGD------- 101
Query: 207 HRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
+E + V+ ++ +K GV +
Sbjct: 102 --VLEHLFDPWAVIEKVKPYIKQNGVILA 128
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 7e-09
Identities = 44/179 (24%), Positives = 68/179 (37%), Gaps = 35/179 (19%)
Query: 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTA--KMEGVQEY 171
V+ LD+ CG GI + + G VVGLD L LR A K +
Sbjct: 42 VRRVLDLACGTGIP----TLELAERGY--EVVGLD------LHEEMLRVARRKAKERNLK 89
Query: 172 VTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ +GDV + F N FD V FF T+ + E + ++ ++ LKPGG
Sbjct: 90 IEFLQGDVLEIAF-KNEFDAVTM--FFSTIM----YFDEE---DLRKLFSKVAEALKPGG 139
Query: 232 VGVV---------WDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQHY 281
V + D V + ++L + D R E + +V +P+
Sbjct: 140 VFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGEV 198
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-08
Identities = 25/132 (18%), Positives = 38/132 (28%), Gaps = 26/132 (19%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK---------MEGV 168
L+IGCG+G L +A + GS G V G+D + L + +
Sbjct: 46 KILEIGCGQGDLSAVLA---DQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDR 102
Query: 169 QEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLK 228
P D +FD VV A + A + +
Sbjct: 103 LTVHFNTNLSDDLGPIADQHFDRVVLA---------HSLWYF---ASANALALLFKNMAA 150
Query: 229 PGGVGVV--WDL 238
V W +
Sbjct: 151 VCDHVDVAEWSM 162
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 1e-08
Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 28/151 (18%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-----CKKRTTLSTLRTAKMEGVQEY 171
K +D+GCG G +A ++ +++G D K + + V
Sbjct: 38 KLLVDVGCGPGTATLQMA---QELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFK 94
Query: 172 VTARE--GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKP 229
+++ + + + D++ + H E + L+
Sbjct: 95 ISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFE-------------KFQRSAYANLRK 141
Query: 230 GGVGVVWD-----LLHVPEYVRRLQELKMED 255
G +W PE+ + E+
Sbjct: 142 DGTIAIWGYADPIFPDYPEFDDLMIEVPYGK 172
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-08
Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 31/143 (21%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-GVQEYVTAR 175
L+IGC G +A R+ +D + A +++
Sbjct: 53 SNGLEIGCAAGAFTEKLAPHC------KRLTVID----VMPRAIGRACQRTKRWSHISWA 102
Query: 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
D+ FD++V A + + +E + + MV++L PGG V
Sbjct: 103 ATDILQFST-AELFDLIVVAEVLY-------Y--LEDMTQMRTAIDNMVKMLAPGGHLVF 152
Query: 236 WDLLHVP----------EYVRRL 248
E V +
Sbjct: 153 GSARDATCRRWGHVAGAETVITI 175
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-08
Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 28/138 (20%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTA--KMEGVQEYV 172
K DIGCG G +A + V G+D LS L A K +V
Sbjct: 35 KRIADIGCGTGTATLLLADHY-------EVTGVD------LSEEMLEIAQEKAMETNRHV 81
Query: 173 TAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D+R L + + + + + E A+ + R+L GG
Sbjct: 82 DFWVQDMRELELPEPVDAITILCDSLNYLQTE---------ADVKQTFDSAARLLTDGGK 132
Query: 233 GVVWDLLHVPEYVRRLQE 250
+++D +H P + L
Sbjct: 133 -LLFD-VHSPYKMETLFN 148
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 4e-08
Identities = 24/180 (13%), Positives = 40/180 (22%), Gaps = 35/180 (19%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTAKMEGVQEYVTA 174
L+ GCG G Q R D S L+ A+
Sbjct: 50 TRVLEAGCGHGPDAARFGPQA------ARWAAYD------FSPELLKLAR-ANAPHADVY 96
Query: 175 REGDVRSLPFGDN-YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVG 233
LP G F ++VS R + + + + P
Sbjct: 97 EWNGKGELPAGLGAPFGLIVS------------RRGPTSV------ILRLPELAAPDAHF 138
Query: 234 VVWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAGPGEVR-LDWR 292
+ V DI + V+ + ++ + D
Sbjct: 139 LYVGPRLNVPEVPERLAAVGWDIVAEDHVSVLAHAPTWEDWQMRGEFMGKLARRADWDAE 198
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 4e-08
Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 21/170 (12%)
Query: 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLD--------CKKRTTLSTLRTAKMEG 167
LD+ CG G+ + + G V +D K A +
Sbjct: 58 CHRVLDVACGTGVD----SIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKW 111
Query: 168 VQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVL 227
V E D + +P GD FD V+ ++ + + +E L + ++
Sbjct: 112 VIEEANWLTLD-KDVPAGDG-FDAVIC--LGNSFA--HLPDSKGDQSEHRLALKNIASMV 165
Query: 228 KPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP 277
+PGG+ V+ D + + ++I +T + +S + K
Sbjct: 166 RPGGLLVI-DHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKA 214
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 9e-08
Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 19/128 (14%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
LD+GCG+G N++ G V D + + T + E + ++
Sbjct: 122 CKVLDLGCGQGR--NSLY--LSLLGY--DVTSWDHNENSIAFLNETKEKENLN--ISTAL 173
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236
D+ + +D +VS F + +R ++ M GG ++
Sbjct: 174 YDINAANI-QENYDFIVSTVVFM-----FLNR-----ERVPSIIKNMKEHTNVGGYNLIV 222
Query: 237 DLLHVPEY 244
+ +
Sbjct: 223 AAMSTDDV 230
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-07
Identities = 40/199 (20%), Positives = 62/199 (31%), Gaps = 41/199 (20%)
Query: 85 FFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTV---KTALDIGCGRGILLNAVATQFKKTG 141
A F A HY + + + LDIGCG G +A A +
Sbjct: 54 MMQARRAFLDA--GHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPE-- 109
Query: 142 SLGRVVGLDCKKRTTLST--LRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFH 199
GLD +S ++ A Q VT LPF D D ++
Sbjct: 110 --ITTFGLD------VSKVAIKAAAKRYPQ--VTFCVASSHRLPFSDTSMDAIIR----- 154
Query: 200 TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG--VGVVWDLLHVPEYVRRLQELKMEDIR 257
+ A E+ RV+KPGG + H+ E +
Sbjct: 155 ----------IYAP----CKAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAP 200
Query: 258 VSERVTAF-MVSSHIVSFR 275
+E++ F + S + +
Sbjct: 201 HAEQLEGFTLQQSAELCYP 219
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 2e-07
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 24/125 (19%)
Query: 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLD--------CKKRTTLSTLRTAKMEG 167
T +D GCG G LL+++ SL ++G+D K ++ K
Sbjct: 722 ASTLVDFGCGSGSLLDSLL---DYPTSLQTIIGVDISPKGLARAAKML---HVKLNKEAC 775
Query: 168 VQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVL 227
+ T +G + + D+ H + A E +++ +
Sbjct: 776 NVKSATLYDGSILEFDSRLHDVDIGTCLEVIE-------HMEEDQACEFGE---KVLSLF 825
Query: 228 KPGGV 232
P +
Sbjct: 826 HPKLL 830
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 2e-07
Identities = 20/151 (13%), Positives = 40/151 (26%), Gaps = 18/151 (11%)
Query: 93 YSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK 152
V R + ALD G G G + + T+ L+
Sbjct: 71 MDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYA-----TTDLLEPV 125
Query: 153 KRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEA 212
K R V +++ + + N +D++V + T
Sbjct: 126 KHMLEEAKRELAGMPVGKFI---LASMETATLPPNTYDLIVIQWTAI-------YLTDA- 174
Query: 213 AAERMRVLGEMVRVLKPGGVGVVWDLLHVPE 243
+ ++ + L P G + +
Sbjct: 175 --DFVKFFKHCQQALTPNGYIFFKENCSTGD 203
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 4e-07
Identities = 30/133 (22%), Positives = 43/133 (32%), Gaps = 26/133 (19%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTAKMEGVQEYVTA 174
+ LD+ CG G+ + G V GL+ LS L A+
Sbjct: 52 ASLLDVACGTGMH----LRHLADSF--GTVEGLE------LSADMLAIARRRNPD--AVL 97
Query: 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
GD+R F V F ++G + + AE L + P GV V
Sbjct: 98 HHGDMRDFSL-GRRFSAVTC--MFSSIG--H----LAGQAELDAALERFAAHVLPDGVVV 148
Query: 235 VWDLLHVPEYVRR 247
V + PE
Sbjct: 149 V-EPWWFPENFTP 160
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 4e-07
Identities = 18/138 (13%), Positives = 46/138 (33%), Gaps = 18/138 (13%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
LD+G L + + G + + + + S ++ + G++E + R
Sbjct: 17 AILLDVGSDHAYLPIELV----ERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRL 72
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236
+ + + V+ A +G R +E ++ + + +L+P
Sbjct: 73 ANGLAAFEETDQVSVITIA----GMGGRLIARILEEGLGKLANVERL--ILQPNN----- 121
Query: 237 DLLHVPEYVRRLQELKME 254
+ LQ+ +
Sbjct: 122 ---REDDLRIWLQDHGFQ 136
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 7e-07
Identities = 36/133 (27%), Positives = 48/133 (36%), Gaps = 26/133 (19%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTAKMEGVQEYVTA 174
+ LD+ CG G F K G GL+ LS L A+ T
Sbjct: 42 SSLLDVACGTGTH----LEHFTKEF--GDTAGLE------LSEDMLTHARKRLPD--ATL 87
Query: 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
+GD+R F VVS F +VG Y ++ E + L+PGGV V
Sbjct: 88 HQGDMRDFRL-GRKFSAVVS--MFSSVG--Y----LKTTEELGAAVASFAEHLEPGGVVV 138
Query: 235 VWDLLHVPEYVRR 247
V + PE
Sbjct: 139 V-EPWWFPETFAD 150
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 9e-07
Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 27/121 (22%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
+ LDIGCGRG L K+ G +G+D + ++ + +
Sbjct: 43 RRVLDIGCGRGEFLEL----CKEEGI--ESIGVD---------INEDMIKFCEGKFNVVK 87
Query: 177 GDVRS--LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
D D Y D V+ H V E H E +L +K V
Sbjct: 88 SDAIEYLKSLPDKYLDGVM---ISHFV--E--HLDPE---RLFELLSLCYSKMKYSSYIV 137
Query: 235 V 235
+
Sbjct: 138 I 138
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 9e-07
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 19/116 (16%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAR 175
LD+GCG G++ A+A + K D +R K+ + +
Sbjct: 54 DDILDLGCGYGVIGIALADEVKS------TTMADINRRAIKLAKENIKLNNLDNYDIRVV 107
Query: 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
D+ D ++ +++ GKE HR +E +LK G
Sbjct: 108 HSDLYE-NVKDRKYNKIITNPPIR-AGKEVLHRIIEEGK----------ELLKDNG 151
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 26/117 (22%), Positives = 36/117 (30%), Gaps = 28/117 (23%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTAKMEGVQEYVTAR 175
L++GCG G A G V D S A + R
Sbjct: 46 KILELGCGAGYQ----AEAMLAAGF--DVDATD------GSPELAAEASRRLGRP---VR 90
Query: 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
L + +D V + A V ++ E VL + R LKPGG+
Sbjct: 91 TMLFHQLDA-IDAYDAVWAHACLLHVPRD----------ELADVLKLIWRALKPGGL 136
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 23/139 (16%), Positives = 40/139 (28%), Gaps = 32/139 (23%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLD--------CKKRTTLSTLRTAKMEGV 168
L++ G G L V L+ +KR V
Sbjct: 84 GPVLELAAGMGRLTFPFLDLGW------EVTALELSTSVLAAFRKR------LAEAPADV 131
Query: 169 QEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLK 228
++ T +GD+ + D F VV ++ +R + + L+
Sbjct: 132 RDRCTLVQGDMSAFAL-DKRFGTVVI--SSGSIN----ELDEA---DRRGLYASVREHLE 181
Query: 229 PGGVGVVWDLLHVPEYVRR 247
PGG + L + E
Sbjct: 182 PGGK-FLLS-LAMSEAAES 198
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-06
Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 14/117 (11%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ--EYVTA 174
+D+GCG G++ + + + +VV +D S+ + + +
Sbjct: 224 GEIVDLGCGNGVIGLTLLDKNPQA----KVVFVDESPMAVASSRLNVETNMPEALDRCEF 279
Query: 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ S F+ V+ FH H + A M R LK G
Sbjct: 280 MINNALS-GVEPFRFNAVLCNPPFHQ-----QHALTDNVAWEM--FHHARRCLKING 328
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-06
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
+ DIG L K + + + S + + G+ E + R+
Sbjct: 23 ERIADIGSDHAYLPCFAV----KNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRK 78
Query: 177 GDVRSLPFGDNYFDVVVSA 195
G+ ++ + D +V A
Sbjct: 79 GNGLAVIEKKDAIDTIVIA 97
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 3e-06
Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 17/115 (14%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177
AL GCG G + A+A+ + VVGLD + T EY + +
Sbjct: 69 RALVPGCGGGHDVVAMASPER------FVVGLDISESALAKANETYGSSPKAEYFSFVKE 122
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
DV + FD++ FF + R M +LKP G
Sbjct: 123 DVFTWR-PTELFDLIFDYVFFCAIE----------PEMRPAWAKSMYELLKPDGE 166
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-06
Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 26/140 (18%)
Query: 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTA--KMEGVQE 170
LD+ CG G L +D LS L A K
Sbjct: 37 VFDDYLDLACGTGNL----TENLCPKF--KNTWAVD------LSQEMLSEAENKFRSQGL 84
Query: 171 YVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG 230
D+ +L + FD++ + + + + + + LK G
Sbjct: 85 KPRLACQDISNLNI-NRKFDLITC--CLDSTN------YIIDSDDLKKYFKAVSNHLKEG 135
Query: 231 GVGVVWDLLHVPEYVRRLQE 250
GV ++D+ + + L
Sbjct: 136 GV-FIFDINSYYKLSQVLGN 154
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 6e-06
Identities = 24/174 (13%), Positives = 53/174 (30%), Gaps = 25/174 (14%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
+ A+ IG G L + G RV ++ + + + + GV V
Sbjct: 124 ERAVFIGGGPLPLTGILL--SHVYG--MRVNVVEIEPDIAELSRKVIEGLGVDG-VNVIT 178
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV- 235
GD + + FDV++ AA A + RV + R + +
Sbjct: 179 GDETVIDGLE--FDVLMVAAL---------------AEPKRRVFRNIHRYVDTETRIIYR 221
Query: 236 --WDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAGPGEV 287
+ + ++ + + ++ ++ F+ P +
Sbjct: 222 TYTGMRAILYAPVSDDDITGFRRAGVVLPSGKVNNTSVLVFKCPDKGELNSKLE 275
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 7e-06
Identities = 24/153 (15%), Positives = 58/153 (37%), Gaps = 16/153 (10%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
+D+ G GI+ ++T+ K ++VG++ ++R R+ +++ + E
Sbjct: 51 GKIIDLCSGNGIIPLLLSTRTK-----AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIE 105
Query: 177 GDVRSLP--FGDNYFDVVVS-AAFFHTVGKEYGHRTVEAAAERM-------RVLGEMVRV 226
D++ + D+V +F T + R + +
Sbjct: 106 YDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASL 165
Query: 227 LKPGG-VGVVWDLLHVPEYVRRLQELKMEDIRV 258
LK GG V + + + +++ ++E R+
Sbjct: 166 LKQGGKANFVHRPERLLDIIDIMRKYRLEPKRI 198
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 9e-06
Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 8/108 (7%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
LD+G L + + G + + S L+ G+ + R
Sbjct: 23 ARLLDVGSDHAYLPIFLL----QMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRL 78
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV 224
+ S + D + +G + ++++ + +V
Sbjct: 79 ANGLSAFEEADNIDTITICG----MGGRLIADILNNDIDKLQHVKTLV 122
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 9e-06
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 15/120 (12%)
Query: 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY 171
+ + LD+G G G L +A + VVG++ + LS + + ++
Sbjct: 230 EGVRGRQVLDLGAGYGALTLPLARMGAE------VVGVEDDLASVLSLQKGLEANALK-- 281
Query: 172 VTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
A DV + FD++V+ FH G + A+ + L+PGG
Sbjct: 282 AQALHSDVDEALTEEARFDIIVTNPPFHV-----GGAVILDVAQAF--VNVAAARLRPGG 334
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-05
Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 18/141 (12%)
Query: 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRT 162
QR + + + ALD G G G + + + V +D + L +T
Sbjct: 68 QRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFR-----EVDMVDITED--FLVQAKT 120
Query: 163 AKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGE 222
E + ++ + +DV+ + + L
Sbjct: 121 YLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQ----------HLAEFLRR 170
Query: 223 MVRVLKPGGVGVVWDLLHVPE 243
L+P G+ V+ D +
Sbjct: 171 CKGSLRPNGIIVIKDNMAQEG 191
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 16/129 (12%)
Query: 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY 171
++ +T +D+ G G L V + + D T + +T +
Sbjct: 176 VFARARTVIDLAGGHGTYLAQVLRRHPQL----TGQIWD-LPTTRDAARKTIHAHDLGGR 230
Query: 172 VTAREGDV-RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG 230
V E ++ + F DVV+ H E V+G ++KPG
Sbjct: 231 VEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAR----------EAREVIGHAAGLVKPG 280
Query: 231 GVGVVWDLL 239
G ++ +
Sbjct: 281 GALLILTMT 289
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 4e-05
Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 15/140 (10%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
+ LD+GCG+G L ++++ G +G G+D + + A+ + V R
Sbjct: 66 DSVLDLGCGKGGDLL----KYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 120
Query: 177 GDVRSLPF-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
D FDV+ S FH + + + + R L+PGG +
Sbjct: 121 QDSYGRHMDLGKEFDVISSQFSFH------YAFSTSESLDIA--QRNIARHLRPGGY-FI 171
Query: 236 WDLLHVPEYVRRLQELKMED 255
+ + R ++ +M +
Sbjct: 172 MTVPSRDVILERYKQGRMSN 191
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 5e-05
Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 13/118 (11%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY---VT 173
+ +D+G G G + +A + +G+D K + + + V
Sbjct: 26 RVHIDLGTGDGRNIYKLAINDQN----TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVV 81
Query: 174 AREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
SLPF + + ++ + +L + + K
Sbjct: 82 FVIAAAESLPF---ELKNIADSISILFPWGTLLEYVIKPNRD---ILSNVADLAKKEA 133
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 1e-04
Identities = 18/145 (12%), Positives = 40/145 (27%), Gaps = 23/145 (15%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177
L++G G G + + + G + ++ + + V
Sbjct: 113 DILEVGVGSGNMSSYILYAL---NGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS 169
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW- 236
D+ D D + A + + ++ ++KPG V +
Sbjct: 170 DIA-----DFISDQMYDAVIAD-------------IPDPWNHVQKIASMMKPGSVATFYL 211
Query: 237 -DLLHVPEYVRRLQELKMEDIRVSE 260
+ + V L M + E
Sbjct: 212 PNFDQSEKTVLSLSASGMHHLETVE 236
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 18/154 (11%)
Query: 88 AGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVV 147
++ + D + + K LDIG G K+ V
Sbjct: 152 VQKSWFGFDHFYSDQSFGKALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEV----EVT 207
Query: 148 GLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV--RSLPFGDNYFDVVVSAAFFHTVGKEY 205
+D + + E + ++ R +PF + D V + F +E
Sbjct: 208 IVD-LPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGF-DAVWMSQFLDCFSEE- 264
Query: 206 GHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239
E + +L + + + + + L
Sbjct: 265 ---------EVISILTRVAQSIGKDSKVYIMETL 289
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 22/159 (13%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM---EGVQEYVT 173
D+G G G AVA + +K V + + R+ ++ +
Sbjct: 38 CRIADLGAGAGAAGMAVAARLEKA----EVTLYERSQEMAEFARRSLELPDNAAFSARIE 93
Query: 174 AREGDVRSLP-------FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERM------RVL 220
E DV D +F V+ ++ G ++A A M +
Sbjct: 94 VLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWI 153
Query: 221 GEMVRVLKPGG-VGVVWDLLHVPEYVRRLQELKMEDIRV 258
++ GG + ++ V E + + + +
Sbjct: 154 RTASAIMVSGGQLSLISRPQSVAEIIAACGS-RFGGLEI 191
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 5e-04
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 11/120 (9%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
+D G G +A G +V D +++ T + G+ E
Sbjct: 24 SIVVDATMGNGNDTAFLA------GLSKKVYAFDVQEQALGKTSQRLSDLGI-ENTELIL 76
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYG-HRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
+L +Y + AA F+ + + + +++ L+ GG +
Sbjct: 77 DGHENLD---HYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAI 133
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 293 | |||
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.93 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.88 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.88 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.86 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.85 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.85 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.85 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.84 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.84 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.83 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.82 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.82 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.82 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.82 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.82 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.81 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.81 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.81 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.8 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.8 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.8 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.8 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.79 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.79 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.79 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.79 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.79 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.79 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.79 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.78 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.78 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.78 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.78 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.78 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.78 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.78 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.78 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.78 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.77 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.77 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.77 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.77 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.77 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.77 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.76 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.76 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.76 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.76 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.76 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.76 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.76 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.76 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.75 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.75 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.75 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.75 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.75 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.75 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.75 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.74 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.74 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.74 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.74 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.74 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.74 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.74 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.74 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.74 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.74 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.74 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.74 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.74 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.74 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.74 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.74 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.73 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.73 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.73 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.73 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.73 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.73 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.73 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.73 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.72 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.72 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.72 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.72 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.72 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.72 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.72 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.72 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.72 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.72 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.71 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.71 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.71 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.71 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.71 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.71 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.7 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.7 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.7 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.7 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.7 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.7 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.7 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.7 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.7 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.69 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.69 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.69 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.69 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.69 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.69 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.69 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.68 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.68 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.68 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.68 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.68 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.68 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.67 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.67 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.67 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.67 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.67 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.67 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.67 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.67 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.66 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.66 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.66 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.66 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.66 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.66 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.66 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.65 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.65 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.65 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.65 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.64 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.64 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.64 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.64 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.63 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.63 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.63 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.63 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.63 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.62 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.62 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.62 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.62 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.62 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.61 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.61 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.61 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.61 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.61 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.61 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.61 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.6 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.6 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.6 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.6 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.59 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.59 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.59 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.59 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.59 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.58 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.58 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.58 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.58 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.58 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.58 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.58 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.57 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.57 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.57 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.57 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.57 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.56 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.56 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.56 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.56 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.56 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.56 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.56 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.55 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.55 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.55 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.55 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.54 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.54 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.54 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.54 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.54 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.54 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.54 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.54 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.54 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.54 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.53 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.53 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.52 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.52 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.52 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.52 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.51 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.51 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.51 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.51 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.51 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.51 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.5 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.5 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.5 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.5 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.49 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.48 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.48 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.47 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.47 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.47 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.47 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.46 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.46 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.46 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.45 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.45 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.45 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.45 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.44 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.44 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.43 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.42 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.42 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.42 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.42 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.42 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.41 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.41 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.4 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.4 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.39 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.38 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.37 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.36 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.35 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.33 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.33 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.33 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.33 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.33 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.33 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.33 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.31 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.28 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.26 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.25 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.23 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.21 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.21 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.19 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.18 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.16 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.15 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.1 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.09 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.08 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.02 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 99.01 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 99.01 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 99.0 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.93 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.92 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.9 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.88 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.86 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.85 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.77 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.75 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.7 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.55 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.53 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.48 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.45 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.4 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.38 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.32 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.29 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.27 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.21 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.11 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.05 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.0 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.99 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.93 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.93 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.83 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.73 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.58 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.52 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.44 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.44 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.23 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.21 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 96.82 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.79 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.47 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.46 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.46 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.18 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.15 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.03 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.94 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 95.9 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.89 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.71 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.64 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.59 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 95.55 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.54 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.46 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 95.36 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 95.31 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.18 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.17 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.02 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 94.93 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 94.77 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 94.55 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.43 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.43 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.36 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 94.34 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.28 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 94.2 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.17 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.07 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.98 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 93.85 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.79 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.78 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 93.77 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.68 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 93.51 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 93.5 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.45 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 93.45 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 93.4 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 93.35 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.29 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.28 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.24 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 93.23 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 93.21 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.19 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 93.18 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.13 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 93.11 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 93.08 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.07 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.01 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 92.95 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.94 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 92.87 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 92.86 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.8 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 92.74 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 92.54 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 92.52 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 92.5 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 92.5 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 92.42 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 92.41 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.41 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 92.32 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 92.31 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.3 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 92.27 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.27 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 92.24 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 92.23 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.21 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 92.15 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.12 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 92.04 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.83 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 91.83 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 91.82 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 91.78 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 91.78 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 91.76 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 91.75 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 91.74 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 91.74 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.66 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 91.62 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 91.61 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 91.57 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 91.52 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 91.49 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 91.49 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.37 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 91.37 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 91.35 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 91.34 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 91.34 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 91.34 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 91.32 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 91.32 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 91.27 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 91.19 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 91.14 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 91.13 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 91.11 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 91.1 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 90.92 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 90.88 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 90.76 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 90.74 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 90.7 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.68 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 90.61 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.41 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 90.4 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 90.35 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 90.33 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 90.2 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 90.05 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 90.0 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 89.94 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 89.76 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 89.68 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 89.42 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 89.35 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 89.29 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 89.26 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 89.21 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 89.18 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 89.17 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 89.14 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 89.12 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 89.03 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 88.99 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 88.97 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 88.96 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 88.95 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 88.9 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 88.74 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 88.74 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 88.72 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 88.66 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 88.42 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 88.38 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 88.33 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 88.3 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 88.24 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 88.23 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 88.15 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 88.13 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 88.11 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 88.09 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 87.82 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 87.71 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 87.7 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 87.61 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 87.55 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 87.5 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 87.45 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 87.42 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 87.38 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 87.38 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 87.25 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 87.24 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 87.04 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 86.94 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 86.77 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 86.76 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 86.71 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 86.71 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 86.58 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 86.54 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 86.53 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 86.24 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 86.11 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 86.04 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 86.01 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 85.8 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 85.7 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 85.68 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 85.66 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 85.65 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 85.63 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 85.54 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.53 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 85.53 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 85.51 |
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=187.59 Aligned_cols=235 Identities=12% Similarity=0.047 Sum_probs=179.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCcc-----
Q 022698 23 VEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVP----- 97 (293)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~----- 97 (293)
.++....+.+|+.+.+......+++....+++....+.+...+.++..++| ++|+.+..+||...+.
T Consensus 17 ~~~~~~~a~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p--------~~~i~g~~~f~~~~~~~~~~~ 88 (276)
T 2b3t_A 17 SESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRDGEP--------IAHLTGVREFWSLPLFVSPAT 88 (276)
T ss_dssp SSCHHHHHHHHHHHHHTCCHHHHHHTTTCBCCHHHHHHHHHHHHHHHTTCC--------HHHHSCEEEETTEEEECCTTS
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHcCCC--------hhHeeeeeEECCceEEeCCCC
Confidence 334444466666666655555666666667777777778888888888888 8888888877765433
Q ss_pred -----chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCce
Q 022698 98 -----LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYV 172 (293)
Q Consensus 98 -----~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v 172 (293)
..+.+++.+++.+. .++.+|||+|||+|.++..+++..+ +.+++++|+|+.+++.+++|+..++.. ++
T Consensus 89 ~ipr~~te~l~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~----~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v 161 (276)
T 2b3t_A 89 LIPRPDTECLVEQALARLP--EQPCRILDLGTGTGAIALALASERP----DCEIIAVDRMPDAVSLAQRNAQHLAIK-NI 161 (276)
T ss_dssp CCCCTTHHHHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCT----TSEEEEECSSHHHHHHHHHHHHHHTCC-SE
T ss_pred cccCchHHHHHHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCC-ce
Confidence 34557777777664 4567999999999999999998765 469999999999999999999988864 69
Q ss_pred EEEEcCCCCCCCCCCcccEEEecchhhhhcc----------ccCcch---hhhHHHHHHHHHHHHHcccCCcEEEEE-cC
Q 022698 173 TAREGDVRSLPFGDNYFDVVVSAAFFHTVGK----------EYGHRT---VEAAAERMRVLGEMVRVLKPGGVGVVW-DL 238 (293)
Q Consensus 173 ~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~----------~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~ 238 (293)
.+.++|+.+. .+.++||+|++|+||+.... ++..+. .........+++++.++|+|||++++. ..
T Consensus 162 ~~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~ 240 (276)
T 2b3t_A 162 HILQSDWFSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW 240 (276)
T ss_dssp EEECCSTTGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred EEEEcchhhh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 9999999873 44678999999999865421 111111 111235678999999999999999884 44
Q ss_pred CCchHHHHHHHHcCCcceEEeeeeccceecceeeeeec
Q 022698 239 LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 239 ~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
.+.+++.+.+++.||..+++.+|+.+.. |++.+++
T Consensus 241 ~~~~~~~~~l~~~Gf~~v~~~~d~~g~~---r~~~~~~ 275 (276)
T 2b3t_A 241 QQGEAVRQAFILAGYHDVETCRDYGDNE---RVTLGRY 275 (276)
T ss_dssp SCHHHHHHHHHHTTCTTCCEEECTTSSE---EEEEEEC
T ss_pred hHHHHHHHHHHHCCCcEEEEEecCCCCC---cEEEEEE
Confidence 5667899999999999999999999987 8887764
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=177.05 Aligned_cols=223 Identities=15% Similarity=0.181 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--cccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCccc------
Q 022698 27 QTLIFLLCHAIFFSISSILFLVY--FEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPL------ 98 (293)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~l~l~~--~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~------ 98 (293)
...+.+|+.+.+......+++.. ..+++. +.+...+.|+..++| ++|+.+...||...+.+
T Consensus 35 ~~~a~~ll~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~r~~~~p--------~~yi~g~~~f~~~~~~v~~~~li 103 (284)
T 1nv8_A 35 VLEVLLIVSRVLGIRKEDLFLKDLGVSPTEE---KRILELVEKRASGYP--------LHYILGEKEFMGLSFLVEEGVFV 103 (284)
T ss_dssp HHHHHHHHHHHHTCCGGGGCCSSCCCCHHHH---HHHHHHHHHHHTTCC--------HHHHHTEEEETTEEEECCTTSCC
T ss_pred HHHHHHHHHHHcCCCHHHHHhccccccccCH---HHHHHHHHHHHCCCC--------CeEEeeeeEECCeEEEeCCCcee
Confidence 33455555555444344444433 344443 567778888899999 99999998888665442
Q ss_pred ----hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 99 ----HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 99 ----~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
.+.+++.+++.+. ..++.+|||+|||+|+++..+++. + +.+|+++|+|+.+++.|++|+..+++.++++|
T Consensus 104 pr~~te~lv~~~l~~~~-~~~~~~vLDlG~GsG~~~~~la~~-~----~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~ 177 (284)
T 1nv8_A 104 PRPETEELVELALELIR-KYGIKTVADIGTGSGAIGVSVAKF-S----DAIVFATDVSSKAVEIARKNAERHGVSDRFFV 177 (284)
T ss_dssp CCTTHHHHHHHHHHHHH-HHTCCEEEEESCTTSHHHHHHHHH-S----SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEE
T ss_pred cChhHHHHHHHHHHHhc-ccCCCEEEEEeCchhHHHHHHHHC-C----CCEEEEEECCHHHHHHHHHHHHHcCCCCceEE
Confidence 3456666666553 124569999999999999999987 5 57999999999999999999999988777999
Q ss_pred EEcCCCCCCCCCCcc---cEEEecchhhhhcc--------ccCcchhhhHHHHHHHHHHHH-HcccCCcEEEE-EcCCCc
Q 022698 175 REGDVRSLPFGDNYF---DVVVSAAFFHTVGK--------EYGHRTVEAAAERMRVLGEMV-RVLKPGGVGVV-WDLLHV 241 (293)
Q Consensus 175 ~~~d~~~~~~~~~~f---D~Iv~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~~-~~~~~~ 241 (293)
+++|+.+. .+ ++| |+|++||||..... ++..+.+ ...+...+++++. +.|+|||++++ ++..+.
T Consensus 178 ~~~D~~~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~-~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~ 254 (284)
T 1nv8_A 178 RKGEFLEP-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALF-GGEDGLDFYREFFGRYDTSGKIVLMEIGEDQV 254 (284)
T ss_dssp EESSTTGG-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHB-CTTTSCHHHHHHHHHCCCTTCEEEEECCTTCH
T ss_pred EECcchhh-cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhc-CCCcHHHHHHHHHHhcCCCCCEEEEEECchHH
Confidence 99999873 32 478 99999999975432 1111000 0112337899999 99999999988 444455
Q ss_pred hHHHHHHHHcCCcceEEeeeeccceecceeeeeecC
Q 022698 242 PEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
+++.+++++. ++.+|+.+.. |++.+++.
T Consensus 255 ~~v~~~~~~~-----~~~~D~~g~~---R~~~~~~k 282 (284)
T 1nv8_A 255 EELKKIVSDT-----VFLKDSAGKY---RFLLLNRR 282 (284)
T ss_dssp HHHTTTSTTC-----EEEECTTSSE---EEEEEECC
T ss_pred HHHHHHHHhC-----CeecccCCCc---eEEEEEEc
Confidence 5666666554 7888999987 88877664
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=167.92 Aligned_cols=149 Identities=19% Similarity=0.228 Sum_probs=121.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.+|||+|||+|..+..+++.++.. +++|+|+|+|+.|++.|++++...+...+++++++|+.++++ ++||+|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~--~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v 143 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHD--NCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMV 143 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSS--SCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCC--CCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccccc
Confidence 3577899999999999999998876532 579999999999999999999988877789999999998875 469999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---------------------------------
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--------------------------------- 239 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------------------- 239 (293)
+++.++++++ ..+...++++++++|||||.|++.+..
T Consensus 144 ~~~~~l~~~~----------~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~ 213 (261)
T 4gek_A 144 VLNFTLQFLE----------PSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKR 213 (261)
T ss_dssp EEESCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHH
T ss_pred eeeeeeeecC----------chhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999987 336678999999999999999985421
Q ss_pred ----------CchHHHHHHHHcCCcceEEeeeeccceecceeeeeecCCC
Q 022698 240 ----------HVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQ 279 (293)
Q Consensus 240 ----------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (293)
..+++.++|+++||+.++++-....|. .+.+.|+..
T Consensus 214 ~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF~----~~iA~K~~~ 259 (261)
T 4gek_A 214 SMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFG----SLVALKAED 259 (261)
T ss_dssp HHHHHHCCCBCHHHHHHHHHHHTCSEEEEEEEETTEE----EEEEECCTT
T ss_pred hhhcccccCCCHHHHHHHHHHcCCCeEEEEEEeccEE----EEEEEEcCC
Confidence 123567789999999998875544443 356777654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-21 Score=159.21 Aligned_cols=157 Identities=24% Similarity=0.329 Sum_probs=129.1
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
.+.+.+.+++.+. ..+. +|||+|||+|.++..+++. + +.+++++|+|+.+++.+++++...+..+++.+.++|
T Consensus 29 ~~~~~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d 101 (219)
T 3dlc_A 29 YPIIAENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-S----DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD 101 (219)
T ss_dssp HHHHHHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-S----EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECB
T ss_pred cHHHHHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcC
Confidence 3455666666664 3334 9999999999999999876 3 469999999999999999999998887789999999
Q ss_pred CCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------------
Q 022698 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------- 239 (293)
Q Consensus 179 ~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------- 239 (293)
+.++++++++||+|+++.++++++ ++..+++++.++|+|||.+++.+..
T Consensus 102 ~~~~~~~~~~~D~v~~~~~l~~~~------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (219)
T 3dlc_A 102 VHNIPIEDNYADLIVSRGSVFFWE------------DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPD 169 (219)
T ss_dssp TTBCSSCTTCEEEEEEESCGGGCS------------CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTT
T ss_pred HHHCCCCcccccEEEECchHhhcc------------CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHH
Confidence 999888788999999999999987 8889999999999999999986422
Q ss_pred ------------CchHHHHHHHHcCCcceEEeeeeccceecceeeeeecCCC
Q 022698 240 ------------HVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQ 279 (293)
Q Consensus 240 ------------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (293)
..+++.++++++||+.+++..+..++ .+.++|+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~-----~~~~~k~~~ 216 (219)
T 3dlc_A 170 WKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGF-----WIIISKTDQ 216 (219)
T ss_dssp HHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEEEETTEE-----EEEEBCCSC
T ss_pred HHhhhhhccccCCHHHHHHHHHHcCCCeEEEEecCCce-----EEEEecccc
Confidence 12568889999999999988766663 445555433
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=159.20 Aligned_cols=145 Identities=21% Similarity=0.294 Sum_probs=124.2
Q ss_pred cchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
+........++..+....++.+|||+|||+|..+..+++..+ .+++|+|+|+.+++.+++++...++.+++.+++
T Consensus 28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~ 102 (257)
T 3f4k_A 28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-----GQITGIDLFPDFIEIFNENAVKANCADRVKGIT 102 (257)
T ss_dssp SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-----SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-----CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEE
Confidence 345667777888876677788999999999999999988754 399999999999999999999999888899999
Q ss_pred cCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------
Q 022698 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------ 238 (293)
Q Consensus 177 ~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------ 238 (293)
+|+.++++++++||+|+++.++++++ +..+++++.++|+|||++++.+.
T Consensus 103 ~d~~~~~~~~~~fD~v~~~~~l~~~~-------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~ 169 (257)
T 3f4k_A 103 GSMDNLPFQNEELDLIWSEGAIYNIG-------------FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDA 169 (257)
T ss_dssp CCTTSCSSCTTCEEEEEEESCSCCCC-------------HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHH
T ss_pred CChhhCCCCCCCEEEEEecChHhhcC-------------HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHh
Confidence 99998887788999999999998873 56799999999999999998652
Q ss_pred ----CCchHHHHHHHHcCCcceEEe
Q 022698 239 ----LHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 239 ----~~~~~~~~~l~~~gf~~~~~~ 259 (293)
...+++.++++++||+.++..
T Consensus 170 ~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 170 YPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp CTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 123578889999999988764
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=155.11 Aligned_cols=155 Identities=22% Similarity=0.260 Sum_probs=126.0
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+. ..++.+|||+|||+|..+..+++..+. ..+++++|+|+.+++.+++++...+.. ++.+...|+.+++
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~ 101 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGE---KGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIP 101 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTT---TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCC
Confidence 34555543 456789999999999999999988621 359999999999999999999888764 6999999999888
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--------------CchHHHHHHH
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--------------HVPEYVRRLQ 249 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--------------~~~~~~~~l~ 249 (293)
+++++||+|+++.++++++ ++..+++++.++|+|||.+++.+.. ...++.++++
T Consensus 102 ~~~~~fD~v~~~~~l~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 169 (219)
T 3dh0_A 102 LPDNTVDFIFMAFTFHELS------------EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILE 169 (219)
T ss_dssp SCSSCEEEEEEESCGGGCS------------SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHH
T ss_pred CCCCCeeEEEeehhhhhcC------------CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHH
Confidence 7788999999999999988 7889999999999999999996532 3468999999
Q ss_pred HcCCcceEEeeeeccceecceeeeeecCCC
Q 022698 250 ELKMEDIRVSERVTAFMVSSHIVSFRKPSQ 279 (293)
Q Consensus 250 ~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (293)
++||+.++.... .... ..+.++|+..
T Consensus 170 ~~Gf~~~~~~~~-~~~~---~~~~~~k~~~ 195 (219)
T 3dh0_A 170 DAGIRVGRVVEV-GKYC---FGVYAMIVKQ 195 (219)
T ss_dssp HTTCEEEEEEEE-TTTE---EEEEEECC--
T ss_pred HCCCEEEEEEee-CCce---EEEEEEeccc
Confidence 999998887543 3322 5677777643
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-20 Score=154.17 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=123.6
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.++..+....++.+|||+|||+|..+..+++..+ +.+++++|+|+.+++.+++++...+ ++.++++|+.+
T Consensus 31 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~ 103 (234)
T 3dtn_A 31 FYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYP----EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSK 103 (234)
T ss_dssp HHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCT----TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTT
T ss_pred HHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhc
Confidence 4455666665455678999999999999999998865 4699999999999999999876654 59999999999
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------------
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------------- 239 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 239 (293)
++++ ++||+|+++.++++++ ..+...+++++.++|||||.+++.+..
T Consensus 104 ~~~~-~~fD~v~~~~~l~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (234)
T 3dtn_A 104 YDFE-EKYDMVVSALSIHHLE----------DEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENS 172 (234)
T ss_dssp CCCC-SCEEEEEEESCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTS
T ss_pred cCCC-CCceEEEEeCccccCC----------HHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhc
Confidence 8765 8899999999999987 223346999999999999999986521
Q ss_pred --------------------CchHHHHHHHHcCCcceEEeeeeccceecceeeeeecCCC
Q 022698 240 --------------------HVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQ 279 (293)
Q Consensus 240 --------------------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (293)
..+++.++|+++||+.+++......+. ++...++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~----~~~~~~~~~ 228 (234)
T 3dtn_A 173 GLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFA----VMFGRKTEG 228 (234)
T ss_dssp SCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETTEE----EEEEECC--
T ss_pred CCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeeeeccee----EEEEEeccc
Confidence 124567789999999999887666654 555555543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=160.71 Aligned_cols=145 Identities=24% Similarity=0.314 Sum_probs=122.9
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
........++..+....++.+|||+|||+|..+..+++. + ..+|+|+|+|+.+++.+++++...++.++++++++
T Consensus 29 ~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 103 (267)
T 3kkz_A 29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-V----TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVG 103 (267)
T ss_dssp CCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-C----SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred CCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-c----CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEc
Confidence 455666777777765677889999999999999988876 3 46999999999999999999999988888999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC------------------
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------ 239 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------ 239 (293)
|+.++++++++||+|+++.+++++. +..+++++.++|||||++++.+..
T Consensus 104 d~~~~~~~~~~fD~i~~~~~~~~~~-------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 170 (267)
T 3kkz_A 104 SMDDLPFRNEELDLIWSEGAIYNIG-------------FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAY 170 (267)
T ss_dssp CTTSCCCCTTCEEEEEESSCGGGTC-------------HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHC
T ss_pred ChhhCCCCCCCEEEEEEcCCceecC-------------HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhC
Confidence 9999887788999999999998873 568999999999999999985431
Q ss_pred ----CchHHHHHHHHcCCcceEEee
Q 022698 240 ----HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 ----~~~~~~~~l~~~gf~~~~~~~ 260 (293)
..+++.+.++++||+.+++..
T Consensus 171 ~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 171 PEIDTIPNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp TTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 234688899999999887754
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-20 Score=158.13 Aligned_cols=144 Identities=21% Similarity=0.239 Sum_probs=123.0
Q ss_pred cchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
+..+...+.+++.+. ..++.+|||+|||+|..+..+++.. +.+++++|+|+.+++.+++++...++.+++.+.+
T Consensus 19 ~~~~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~ 92 (256)
T 1nkv_A 19 PFTEEKYATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-----GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH 92 (256)
T ss_dssp SCCHHHHHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred CCCHHHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE
Confidence 455667777777764 5678899999999999999998775 2589999999999999999999888877899999
Q ss_pred cCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------
Q 022698 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------ 238 (293)
Q Consensus 177 ~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------ 238 (293)
+|+.++++ +++||+|+++.++++.+ ++..+++++.++|||||.+++.+.
T Consensus 93 ~d~~~~~~-~~~fD~V~~~~~~~~~~------------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (256)
T 1nkv_A 93 NDAAGYVA-NEKCDVAACVGATWIAG------------GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVS 159 (256)
T ss_dssp SCCTTCCC-SSCEEEEEEESCGGGTS------------SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCS
T ss_pred CChHhCCc-CCCCCEEEECCChHhcC------------CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcc
Confidence 99998876 78899999999999987 788999999999999999998542
Q ss_pred -----CCchHHHHHHHHcCCcceEEe
Q 022698 239 -----LHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 239 -----~~~~~~~~~l~~~gf~~~~~~ 259 (293)
....++.++++++||+.+++.
T Consensus 160 ~~~~~~~~~~~~~~l~~aGf~~~~~~ 185 (256)
T 1nkv_A 160 STSDFLTLPGLVGAFDDLGYDVVEMV 185 (256)
T ss_dssp CGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred cccccCCHHHHHHHHHHCCCeeEEEE
Confidence 123578899999999988764
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-21 Score=160.52 Aligned_cols=172 Identities=13% Similarity=0.082 Sum_probs=111.7
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+.+++++.+....++.+|||+|||+|.++..+++..+ +.+++++|+|+.+++.+++++..++. +++++++
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~ 86 (215)
T 4dzr_A 13 DTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP----GVSVTAVDLSMDALAVARRNAERFGA--VVDWAAA 86 (215)
T ss_dssp HHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT----TEEEEEEECC---------------------CCHH
T ss_pred cHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEc
Confidence 44567777777775445678999999999999999998865 46999999999999999999888775 5889999
Q ss_pred CCCCCCCCC-----CcccEEEecchhhhhccccCcchh--------------hhHHHHHHHHHHHHHcccCCcE-EEE-E
Q 022698 178 DVRSLPFGD-----NYFDVVVSAAFFHTVGKEYGHRTV--------------EAAAERMRVLGEMVRVLKPGGV-GVV-W 236 (293)
Q Consensus 178 d~~~~~~~~-----~~fD~Iv~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~LkpgG~-l~~-~ 236 (293)
|+.+ ++++ ++||+|++|+||+........... ........+++++.++|||||+ +++ +
T Consensus 87 d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 87 DGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp HHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred chHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 9877 4444 889999999998654421110000 0001226788999999999999 444 3
Q ss_pred cCCCchHHHHHHH--HcCCcceEEeeeeccceecceeeeeecCCC
Q 022698 237 DLLHVPEYVRRLQ--ELKMEDIRVSERVTAFMVSSHIVSFRKPSQ 279 (293)
Q Consensus 237 ~~~~~~~~~~~l~--~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (293)
.....+++.+.+. +.||..+++..+..+.. |++.+++...
T Consensus 166 ~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~---r~~~~~~~~~ 207 (215)
T 4dzr_A 166 GHNQADEVARLFAPWRERGFRVRKVKDLRGID---RVIAVTREPG 207 (215)
T ss_dssp TTSCHHHHHHHTGGGGGGTEECCEEECTTSCE---EEEEEEECC-
T ss_pred CCccHHHHHHHHHHhhcCCceEEEEEecCCCE---EEEEEEEcCC
Confidence 3445677888889 99999999999988875 8888887543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=157.13 Aligned_cols=144 Identities=20% Similarity=0.280 Sum_probs=122.3
Q ss_pred HHHHHHHHHhc---CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 100 YDMAQRMVGSV---NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 100 ~~~~~~l~~~~---~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
....+.+++.+ ....++.+|||+|||+|..+..+++..+ .+++++|+|+.+++.++++....++.+++.+.+
T Consensus 64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-----~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~ 138 (297)
T 2o57_A 64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG-----VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY 138 (297)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-----CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE
Confidence 34556666666 2456778999999999999999988752 599999999999999999998888877899999
Q ss_pred cCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------
Q 022698 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------ 238 (293)
Q Consensus 177 ~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------ 238 (293)
+|+.++++++++||+|+++.++++++ ++..+++++.++|||||.+++.+.
T Consensus 139 ~d~~~~~~~~~~fD~v~~~~~l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 206 (297)
T 2o57_A 139 GSFLEIPCEDNSYDFIWSQDAFLHSP------------DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRI 206 (297)
T ss_dssp CCTTSCSSCTTCEEEEEEESCGGGCS------------CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHH
T ss_pred cCcccCCCCCCCEeEEEecchhhhcC------------CHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHh
Confidence 99999888888999999999999998 788999999999999999998542
Q ss_pred -----CCchHHHHHHHHcCCcceEEee
Q 022698 239 -----LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 239 -----~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
....++.++++++||+.+++..
T Consensus 207 ~~~~~~~~~~~~~~l~~aGf~~~~~~~ 233 (297)
T 2o57_A 207 KLHDMGSLGLYRSLAKECGLVTLRTFS 233 (297)
T ss_dssp TCSSCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 1234677889999999887754
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=154.98 Aligned_cols=144 Identities=27% Similarity=0.398 Sum_probs=121.5
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
..+.+.+++.+. ..++.+|||+|||+|..+..+++.. +.+++++|+|+.+++.+++++...++.+++.+..+|+
T Consensus 47 ~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~ 120 (273)
T 3bus_A 47 DRLTDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-----DVRVTGISISRPQVNQANARATAAGLANRVTFSYADA 120 (273)
T ss_dssp HHHHHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-----CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc
Confidence 345566666664 4677899999999999999988764 3699999999999999999999888877899999999
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--------------------
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-------------------- 239 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------- 239 (293)
.++++++++||+|+++.++++++ ++..+++++.++|||||++++.+..
T Consensus 121 ~~~~~~~~~fD~v~~~~~l~~~~------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 188 (273)
T 3bus_A 121 MDLPFEDASFDAVWALESLHHMP------------DRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGG 188 (273)
T ss_dssp TSCCSCTTCEEEEEEESCTTTSS------------CHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCccEEEEechhhhCC------------CHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhc
Confidence 99888788999999999999998 7789999999999999999985421
Q ss_pred ------CchHHHHHHHHcCCcceEEeee
Q 022698 240 ------HVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 240 ------~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
...++.++++++||+.+++...
T Consensus 189 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 216 (273)
T 3bus_A 189 GVLSLGGIDEYESDVRQAELVVTSTVDI 216 (273)
T ss_dssp TCCCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred CccCCCCHHHHHHHHHHcCCeEEEEEEC
Confidence 1256788899999998877643
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-20 Score=161.94 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=121.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHH-HHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 113 WSTVKTALDIGCGRGILLNAVA-TQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~-~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
..++.+|||+|||+|..+..++ ...+ +.+++++|+|+.+++.+++++...+..++++++++|+.+++++ ++||+
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~ 190 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACP----GVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDL 190 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCT----TCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCC----CCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEE
Confidence 3567899999999999998775 2222 5799999999999999999999888877899999999998776 89999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC---------------------------------
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL--------------------------------- 238 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--------------------------------- 238 (293)
|+++.++++++. ......+++++.++|||||.+++.+.
T Consensus 191 v~~~~~~~~~~~---------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 261 (305)
T 3ocj_A 191 LTSNGLNIYEPD---------DARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLI 261 (305)
T ss_dssp EECCSSGGGCCC---------HHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEECChhhhcCC---------HHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHH
Confidence 999999998861 12334589999999999999998652
Q ss_pred -------CCchHHHHHHHHcCCcceEEeeeeccceecceeeeeecC
Q 022698 239 -------LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 239 -------~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
....++.++++++||+.+++..+..++. ..+.++||
T Consensus 262 ~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~---~~v~a~Kp 304 (305)
T 3ocj_A 262 QPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLF---PTVIARKP 304 (305)
T ss_dssp CCSCCCCCCHHHHHHHHHHTTCEEEEEECCTTSSS---CEEEEECC
T ss_pred hhhhhccCCHHHHHHHHHHCCCEEEEEEcccCcee---eEEEEecC
Confidence 1356788999999999999887555544 56777776
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=156.35 Aligned_cols=139 Identities=23% Similarity=0.313 Sum_probs=117.5
Q ss_pred HHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC
Q 022698 106 MVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG 185 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 185 (293)
++.......++.+|||+|||+|.++..+++..+ +.+++++|+|+.+++.+++++...+. +++.+...|+.+++++
T Consensus 28 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~ 102 (276)
T 3mgg_A 28 LLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNP----DAEITSIDISPESLEKARENTEKNGI-KNVKFLQANIFSLPFE 102 (276)
T ss_dssp HHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGCCSC
T ss_pred HHhhcccCCCCCeEEEecCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCC-CCcEEEEcccccCCCC
Confidence 333333456788999999999999999988765 46999999999999999999988876 3599999999998877
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--------------------------
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-------------------------- 239 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------------- 239 (293)
+++||+|+++.++++++ ++..+++++.++|||||.+++.+..
T Consensus 103 ~~~fD~v~~~~~l~~~~------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (276)
T 3mgg_A 103 DSSFDHIFVCFVLEHLQ------------SPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAY 170 (276)
T ss_dssp TTCEEEEEEESCGGGCS------------CHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEechhhhcC------------CHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHh
Confidence 88999999999999998 7889999999999999999985421
Q ss_pred ------CchHHHHHHHHcCCcceEEeee
Q 022698 240 ------HVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 240 ------~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
...++.++|+++||+.+++...
T Consensus 171 ~~~~~~~~~~l~~~l~~aGf~~v~~~~~ 198 (276)
T 3mgg_A 171 MKGNSLVGRQIYPLLQESGFEKIRVEPR 198 (276)
T ss_dssp TTCCTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred cCCCcchHHHHHHHHHHCCCCeEEEeeE
Confidence 1246778999999999887643
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=153.87 Aligned_cols=139 Identities=23% Similarity=0.290 Sum_probs=114.8
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
.+.+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++++...+.. ++.+.++|+.++
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~------~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l 97 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFV------KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM 97 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGS------SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhC------CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhC
Confidence 344555554 3567899999999999998887653 39999999999999999998887753 699999999998
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------------
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------------ 238 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------------ 238 (293)
++++++||+|+++.++++++ ++..+++++.++|||||++++.+.
T Consensus 98 ~~~~~~fD~V~~~~~l~~~~------------d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (260)
T 1vl5_A 98 PFTDERFHIVTCRIAAHHFP------------NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHH 165 (260)
T ss_dssp CSCTTCEEEEEEESCGGGCS------------CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEEEhhhhHhcC------------CHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCcccc
Confidence 88888999999999999998 888999999999999999998532
Q ss_pred --CCchHHHHHHHHcCCcceEEeee
Q 022698 239 --LHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 239 --~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
....++.++++++||+.+.+...
T Consensus 166 ~~~~~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 166 RAWKKSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp CCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred CCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 12346888899999998776643
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-19 Score=151.94 Aligned_cols=145 Identities=16% Similarity=0.263 Sum_probs=120.3
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
.....+.+++.+. ..++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.++++.... +++++.+.|
T Consensus 40 ~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d 110 (266)
T 3ujc_A 40 GLEATKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-----GAHTHGIDICSNIVNMANERVSGN---NKIIFEAND 110 (266)
T ss_dssp HHHHHHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECC
T ss_pred hHHHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECc
Confidence 3445666776663 5677899999999999999998875 259999999999999999887654 469999999
Q ss_pred CCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC--------------------
Q 022698 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-------------------- 238 (293)
Q Consensus 179 ~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------- 238 (293)
+.++++++++||+|+++.++++++ ..++..+++++.++|||||.+++.+.
T Consensus 111 ~~~~~~~~~~fD~v~~~~~l~~~~----------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (266)
T 3ujc_A 111 ILTKEFPENNFDLIYSRDAILALS----------LENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRK 180 (266)
T ss_dssp TTTCCCCTTCEEEEEEESCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHT
T ss_pred cccCCCCCCcEEEEeHHHHHHhcC----------hHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCC
Confidence 999888788999999999999984 23889999999999999999998542
Q ss_pred ---CCchHHHHHHHHcCCcceEEeeee
Q 022698 239 ---LHVPEYVRRLQELKMEDIRVSERV 262 (293)
Q Consensus 239 ---~~~~~~~~~l~~~gf~~~~~~~~~ 262 (293)
...+++.++++++||+.++.....
T Consensus 181 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 181 YTLITVEEYADILTACNFKNVVSKDLS 207 (266)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEEeCC
Confidence 234678999999999998876543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.8e-19 Score=155.81 Aligned_cols=143 Identities=20% Similarity=0.236 Sum_probs=120.8
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
....+.+++.+....++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.+++++..+++.+++.+.++|+
T Consensus 102 ~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 176 (312)
T 3vc1_A 102 SAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-----GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM 176 (312)
T ss_dssp HHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh
Confidence 34455667666546778899999999999999998774 2599999999999999999999998877899999999
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC---------------------
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL--------------------- 238 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--------------------- 238 (293)
.++++++++||+|+++.+++++ ++..+++++.++|||||++++++.
T Consensus 177 ~~~~~~~~~fD~V~~~~~l~~~-------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
T 3vc1_A 177 LDTPFDKGAVTASWNNESTMYV-------------DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFE 243 (312)
T ss_dssp TSCCCCTTCEEEEEEESCGGGS-------------CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHT
T ss_pred hcCCCCCCCEeEEEECCchhhC-------------CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhc
Confidence 9988778899999999999887 367899999999999999998542
Q ss_pred ---CCchHHHHHHHHcCCcceEEee
Q 022698 239 ---LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 239 ---~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
...+++.++++++||+.+++..
T Consensus 244 ~~~~s~~~~~~~l~~aGf~~~~~~~ 268 (312)
T 3vc1_A 244 CNIHSRREYLRAMADNRLVPHTIVD 268 (312)
T ss_dssp CCCCBHHHHHHHHHTTTEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 1235688899999999887764
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-19 Score=154.61 Aligned_cols=144 Identities=18% Similarity=0.255 Sum_probs=120.3
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
.+.....+++.+....++.+|||+|||+|..+..+++.++. +.+++|+|+|+.+++.+++++...+. ++++.+.|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d 80 (284)
T 3gu3_A 6 NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPE---GSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGD 80 (284)
T ss_dssp CHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCT---TCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESC
T ss_pred chHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcc
Confidence 34566677777766677889999999999999998877652 36999999999999999999887653 69999999
Q ss_pred CCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------------
Q 022698 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------- 239 (293)
Q Consensus 179 ~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------- 239 (293)
+.++++ +++||+|+++.++++++ ++..+++++.++|||||++++.+..
T Consensus 81 ~~~~~~-~~~fD~v~~~~~l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (284)
T 3gu3_A 81 ATEIEL-NDKYDIAICHAFLLHMT------------TPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFI 147 (284)
T ss_dssp TTTCCC-SSCEEEEEEESCGGGCS------------SHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHC
T ss_pred hhhcCc-CCCeeEEEECChhhcCC------------CHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhcc
Confidence 999876 46899999999999998 8889999999999999999986543
Q ss_pred ---------------------CchHHHHHHHHcCCcceEEee
Q 022698 240 ---------------------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 ---------------------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
...++.++|+++||+.++...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 148 QLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECRV 189 (284)
T ss_dssp CHHHHHHHHHHHHHHTCCCTTGGGTHHHHHHHTTCEEEEEEE
T ss_pred chHHHHHHHHHHhhhhcccccHHHHHHHHHHHcCCCeEEEEE
Confidence 123467889999999887743
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.9e-19 Score=148.59 Aligned_cols=158 Identities=12% Similarity=0.135 Sum_probs=120.7
Q ss_pred HHHHHHHhcCCC-CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 102 MAQRMVGSVNDW-STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 102 ~~~~l~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
..+.+.+.+... .++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++....+. ++.+.++|+.
T Consensus 23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~------~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~ 94 (246)
T 1y8c_A 23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK------FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDIS 94 (246)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG------SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGG
T ss_pred HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC------CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccc
Confidence 344444444322 35679999999999999888765 35899999999999999999887664 5899999999
Q ss_pred CCCCCCCcccEEEecc-hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc----------------------
Q 022698 181 SLPFGDNYFDVVVSAA-FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD---------------------- 237 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~---------------------- 237 (293)
+++++ ++||+|+++. ++++++ ...++..+++++.++|+|||.+++..
T Consensus 95 ~~~~~-~~fD~v~~~~~~l~~~~---------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (246)
T 1y8c_A 95 NLNIN-RKFDLITCCLDSTNYII---------DSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEV 164 (246)
T ss_dssp GCCCS-CCEEEEEECTTGGGGCC---------SHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTE
T ss_pred cCCcc-CCceEEEEcCccccccC---------CHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcE
Confidence 87765 7899999998 999883 12278899999999999999998721
Q ss_pred -------------------------------------CCCchHHHHHHHHcCCcceEEeeeecccee----cceeeeeec
Q 022698 238 -------------------------------------LLHVPEYVRRLQELKMEDIRVSERVTAFMV----SSHIVSFRK 276 (293)
Q Consensus 238 -------------------------------------~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~----~~~~~~~~~ 276 (293)
....+++.++|+++||+.+++..+..+.+. ..-++.++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK 244 (246)
T 1y8c_A 165 FYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred EEEEecccCCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence 124568999999999999998766433221 123566666
Q ss_pred C
Q 022698 277 P 277 (293)
Q Consensus 277 ~ 277 (293)
+
T Consensus 245 ~ 245 (246)
T 1y8c_A 245 G 245 (246)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=151.44 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=114.2
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP- 183 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~- 183 (293)
.++..+. .++.+|||+|||+|..+..+++. +.+++|+|+|+.+++.+++++...++.+++.++++|+.+++
T Consensus 60 ~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 131 (285)
T 4htf_A 60 RVLAEMG--PQKLRVLDAGGGEGQTAIKMAER------GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS 131 (285)
T ss_dssp HHHHHTC--SSCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG
T ss_pred HHHHhcC--CCCCEEEEeCCcchHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh
Confidence 4444443 23579999999999999988876 35999999999999999999998887778999999999876
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------------- 238 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------------- 238 (293)
+.+++||+|+++.++++++ ++..+++++.++|||||.+++...
T Consensus 132 ~~~~~fD~v~~~~~l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (285)
T 4htf_A 132 HLETPVDLILFHAVLEWVA------------DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKK 199 (285)
T ss_dssp GCSSCEEEEEEESCGGGCS------------CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC
T ss_pred hcCCCceEEEECchhhccc------------CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhcccc
Confidence 5678999999999999998 888999999999999999988432
Q ss_pred ----------CCchHHHHHHHHcCCcceEEee
Q 022698 239 ----------LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 239 ----------~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
....++.++++++||+.+++..
T Consensus 200 ~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~ 231 (285)
T 4htf_A 200 KKRTLSPDYPRDPTQVYLWLEEAGWQIMGKTG 231 (285)
T ss_dssp ----CCCSCCBCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccCCCCCCCCHHHHHHHHHHCCCceeeeee
Confidence 1235789999999999887653
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=145.91 Aligned_cols=137 Identities=18% Similarity=0.272 Sum_probs=111.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. .++.+.++|+.+++.+ ++||+|+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~-~~fD~v~ 111 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA------GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP-TSIDTIV 111 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT------TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC-SCCSEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC------CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC-CCeEEEE
Confidence 35679999999999999988875 3599999999999999998865 3488999999998776 8999999
Q ss_pred ecchhhhhccccCcchhhhHHHHHH--HHHHHHHcccCCcEEEEEcCC--------------------------------
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMR--VLGEMVRVLKPGGVGVVWDLL-------------------------------- 239 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~LkpgG~l~~~~~~-------------------------------- 239 (293)
++.++++++ ++.. +++++.++|||||.+++.+..
T Consensus 112 ~~~~l~~~~------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (220)
T 3hnr_A 112 STYAFHHLT------------DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYT 179 (220)
T ss_dssp EESCGGGSC------------HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCC
T ss_pred ECcchhcCC------------hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcC
Confidence 999999998 5554 999999999999999986421
Q ss_pred CchHHHHHHHHcCCcceEEeeeeccceecceeeeeecCCC
Q 022698 240 HVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQ 279 (293)
Q Consensus 240 ~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (293)
..+++.++++++||+.+..... .+. .++.+++++.
T Consensus 180 ~~~~~~~~l~~aGf~v~~~~~~--~~~---w~~~~~~~~~ 214 (220)
T 3hnr_A 180 RIPVMQTIFENNGFHVTFTRLN--HFV---WVMEATKQLE 214 (220)
T ss_dssp BHHHHHHHHHHTTEEEEEEECS--SSE---EEEEEEECSC
T ss_pred CHHHHHHHHHHCCCEEEEeecc--ceE---EEEeehhhhh
Confidence 2357889999999986655433 433 5677776653
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=150.34 Aligned_cols=145 Identities=19% Similarity=0.240 Sum_probs=113.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.. ++.++++|+.+++. +++||+|+
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-~~~fD~v~ 115 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS------FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-GRRFSAVT 115 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT------SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-SCCEEEEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-cCCcCEEE
Confidence 34679999999999999888765 3589999999999999998753 48999999999776 67899999
Q ss_pred ecc-hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc-----------------------------------
Q 022698 194 SAA-FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD----------------------------------- 237 (293)
Q Consensus 194 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~----------------------------------- 237 (293)
|+. ++++++ ..++...+++++.++|+|||.+++..
T Consensus 116 ~~~~~l~~~~---------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (263)
T 3pfg_A 116 CMFSSIGHLA---------GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGE 186 (263)
T ss_dssp ECTTGGGGSC---------HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred EcCchhhhcC---------CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCc
Confidence 997 998885 12367789999999999999999831
Q ss_pred ---------------------------CCCchHHHHHHHHcCCcceEEeeeeccceecceeeeeecCCCCCCCC
Q 022698 238 ---------------------------LLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQHYAGP 284 (293)
Q Consensus 238 ---------------------------~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (293)
....+++.++|+++||+.+++.....+. .++.++||......+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~----~~~va~K~a~~~~~~ 256 (263)
T 3pfg_A 187 ATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGR----GLFTGLPGAKGETRL 256 (263)
T ss_dssp EEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSS----CEEEEEECC------
T ss_pred EEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCc----eeEEEecCCCCccch
Confidence 0124789999999999988876554432 478888876555444
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=149.14 Aligned_cols=135 Identities=20% Similarity=0.219 Sum_probs=112.6
Q ss_pred HHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC
Q 022698 106 MVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG 185 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 185 (293)
+.+.+. ..++.+|||+|||+|..+..+++..+ .+++++|+|+.+++.++++.. ..++.+.++|+.+++++
T Consensus 36 l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~-----~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~ 105 (253)
T 3g5l_A 36 LKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGA-----KKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIE 105 (253)
T ss_dssp HHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTC-----SEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCC
T ss_pred HHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCC-----CEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCC
Confidence 344443 34678999999999999998887632 399999999999999998866 24599999999988877
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--------------------------
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-------------------------- 239 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------------- 239 (293)
+++||+|+++.++++++ ++..+++++.++|||||.+++....
T Consensus 106 ~~~fD~v~~~~~l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (253)
T 3g5l_A 106 PDAYNVVLSSLALHYIA------------SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDR 173 (253)
T ss_dssp TTCEEEEEEESCGGGCS------------CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECC
T ss_pred CCCeEEEEEchhhhhhh------------hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEecc
Confidence 88999999999999988 8899999999999999999985210
Q ss_pred ---------------------CchHHHHHHHHcCCcceEEeeee
Q 022698 240 ---------------------HVPEYVRRLQELKMEDIRVSERV 262 (293)
Q Consensus 240 ---------------------~~~~~~~~l~~~gf~~~~~~~~~ 262 (293)
+..++.++|+++||+.+++.+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 174 YFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPE 217 (253)
T ss_dssp TTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCC
T ss_pred ccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeecCC
Confidence 45789999999999998887543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=147.33 Aligned_cols=138 Identities=24% Similarity=0.347 Sum_probs=115.0
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
..+++.+. ..++.+|||+|||+|..+..+++.. .+++++|+|+.+++.+++++...+. +++.+.++|+.+++
T Consensus 11 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 82 (239)
T 1xxl_A 11 GLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYV------QECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLP 82 (239)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGS------SEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCC
T ss_pred chHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhC------CEEEEEECCHHHHHHHHHHHHHcCC-CCeEEEecccccCC
Confidence 34444443 4678899999999999998887653 4999999999999999999988776 35999999999988
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC------------------------
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------ 239 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------ 239 (293)
+++++||+|+++.++++++ ++..+++++.++|||||.+++.+..
T Consensus 83 ~~~~~fD~v~~~~~l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (239)
T 1xxl_A 83 FPDDSFDIITCRYAAHHFS------------DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVR 150 (239)
T ss_dssp SCTTCEEEEEEESCGGGCS------------CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCC
T ss_pred CCCCcEEEEEECCchhhcc------------CHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccC
Confidence 8788999999999999988 7889999999999999999985421
Q ss_pred --CchHHHHHHHHcCCcceEEeee
Q 022698 240 --HVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 240 --~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
...++.++++++||+.+++...
T Consensus 151 ~~~~~~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 151 ESSLSEWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp CCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCCHHHHHHHHHHCCCcEEEEEee
Confidence 2346888899999998777653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-18 Score=148.95 Aligned_cols=140 Identities=18% Similarity=0.207 Sum_probs=115.0
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.+++.+. ..++.+|||||||+|..+..+++..+ .+|+|+|+|+.+++.+++++...+..+++.+..+|+.+
T Consensus 52 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-----~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 125 (287)
T 1kpg_A 52 KIDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-----VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ 125 (287)
T ss_dssp HHHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-----CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred HHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-----CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh
Confidence 4445555543 45678999999999999999986653 59999999999999999999888877789999999987
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------------
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------------- 239 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 239 (293)
++ ++||+|+++.++++++. .++..+++++.++|||||.+++.+..
T Consensus 126 ~~---~~fD~v~~~~~l~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (287)
T 1kpg_A 126 FD---EPVDRIVSIGAFEHFGH----------ERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFL 192 (287)
T ss_dssp CC---CCCSEEEEESCGGGTCT----------TTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHH
T ss_pred CC---CCeeEEEEeCchhhcCh----------HHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchh
Confidence 65 78999999999999841 27889999999999999999984321
Q ss_pred --------------CchHHHHHHHHcCCcceEEee
Q 022698 240 --------------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 --------------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
...++.++++++||+.+++..
T Consensus 193 ~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~ 227 (287)
T 1kpg_A 193 KFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQS 227 (287)
T ss_dssp HHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEE
T ss_pred hhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEe
Confidence 245677888999999888764
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-19 Score=149.13 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=108.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||+|..+..+++.. ..+++++|+|+.+++.+++++...+ ..++.+...|+.++++++++||+|++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~ 152 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-----FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWI 152 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-----CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-----CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEE
Confidence 57899999999999998777653 2599999999999999999987764 24689999999888777778999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------CchHHHHHHHHcCCcceEE
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----------------HVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------~~~~~~~~l~~~gf~~~~~ 258 (293)
+.++++++ ..+...+++++.++|+|||++++.+.. ...++.++++++||+.++.
T Consensus 153 ~~~l~~~~----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 153 QWVIGHLT----------DQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp ESCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhCC----------HHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 99999987 123558999999999999999985421 3568999999999998887
Q ss_pred ee
Q 022698 259 SE 260 (293)
Q Consensus 259 ~~ 260 (293)
..
T Consensus 223 ~~ 224 (241)
T 2ex4_A 223 ER 224 (241)
T ss_dssp EE
T ss_pred ee
Confidence 64
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=144.39 Aligned_cols=125 Identities=14% Similarity=0.183 Sum_probs=101.4
Q ss_pred cchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC----ce
Q 022698 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE----YV 172 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~----~v 172 (293)
+..+...+.+++.+.. .++.+|||+|||+|.++..+++..+ ..+++++|+|+.+++.+++++..+++.. ++
T Consensus 12 ~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v 86 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQ-SNARRVIDLGCGQGNLLKILLKDSF----FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERL 86 (217)
T ss_dssp CHHHHHHHHHHHHHHH-TTCCEEEEETCTTCHHHHHHHHCTT----CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTE
T ss_pred CHHHHHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHhhCC----CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcce
Confidence 3445555666655542 4567999999999999998887643 4699999999999999999988777653 79
Q ss_pred EEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 173 TAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 173 ~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
.+.++|+...+...++||+|+++.++++++ ..+...+++++.++|||||.+++.
T Consensus 87 ~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~----------~~~~~~~l~~~~~~LkpgG~li~~ 140 (217)
T 3jwh_A 87 QLIQGALTYQDKRFHGYDAATVIEVIEHLD----------LSRLGAFERVLFEFAQPKIVIVTT 140 (217)
T ss_dssp EEEECCTTSCCGGGCSCSEEEEESCGGGCC----------HHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred EEEeCCcccccccCCCcCEEeeHHHHHcCC----------HHHHHHHHHHHHHHcCCCEEEEEc
Confidence 999999977666668999999999999987 224489999999999999987764
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=148.37 Aligned_cols=149 Identities=14% Similarity=0.233 Sum_probs=112.0
Q ss_pred HHhcCCCC-CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--
Q 022698 107 VGSVNDWS-TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-- 183 (293)
Q Consensus 107 ~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 183 (293)
+....... ++.+|||+|||+|.++..+++..+ .+|+|+|+++.+++.|++|+..+++.++++++++|+.+.+
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-----~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~ 114 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK-----AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL 114 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC-----CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC-----CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh
Confidence 33333455 678999999999999998887632 3999999999999999999999998888999999998864
Q ss_pred CCCCcccEEEecchhhhhccc--------cCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc-CCCchHHHHHHHHcCCc
Q 022698 184 FGDNYFDVVVSAAFFHTVGKE--------YGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD-LLHVPEYVRRLQELKME 254 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~l~~~gf~ 254 (293)
++.++||+|++|+||...... ...+......+...+++.+.++|+|||+++++. .....++.+.+++.||.
T Consensus 115 ~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~ 194 (259)
T 3lpm_A 115 IPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLE 194 (259)
T ss_dssp SCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEE
T ss_pred hccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCc
Confidence 346889999999998655100 001111112356789999999999999998854 45567888899999998
Q ss_pred ceEEee
Q 022698 255 DIRVSE 260 (293)
Q Consensus 255 ~~~~~~ 260 (293)
..++..
T Consensus 195 ~~~~~~ 200 (259)
T 3lpm_A 195 PKRIQF 200 (259)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 776654
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-18 Score=145.07 Aligned_cols=133 Identities=28% Similarity=0.383 Sum_probs=111.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC----CCceEEEEcCCCCCCCCCCcc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV----QEYVTAREGDVRSLPFGDNYF 189 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~f 189 (293)
.++.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+. ..++.+...|+..+++++++|
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 102 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK------GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSF 102 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC------CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCce
Confidence 46779999999999999988876 35999999999999999999887765 235899999999988778899
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------------
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------------------- 238 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------------------- 238 (293)
|+|+++.++++++. ......+++++.++|+|||.+++.+.
T Consensus 103 D~v~~~~~l~~~~~---------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (235)
T 3sm3_A 103 DFAVMQAFLTSVPD---------PKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDP 173 (235)
T ss_dssp EEEEEESCGGGCCC---------HHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECT
T ss_pred eEEEEcchhhcCCC---------HHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEeccc
Confidence 99999999999871 11233899999999999999998632
Q ss_pred -----------CCchHHHHHHHHcCCcceEEeee
Q 022698 239 -----------LHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 239 -----------~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
...+++.++++++||+.+++...
T Consensus 174 ~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 174 ETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp TTCCEEEEEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred ccCCcceeeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 24568999999999999988654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=157.95 Aligned_cols=133 Identities=23% Similarity=0.367 Sum_probs=112.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-----C-C-CCceEEEEcCCCCC----
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-----G-V-QEYVTAREGDVRSL---- 182 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-----~-~-~~~v~~~~~d~~~~---- 182 (293)
.++.+|||+|||+|..+..+++.... +.+|+++|+|+.+++.++++++.+ | . .++++++++|+.++
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~ 158 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGE---HGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE 158 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTT---TCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc
Confidence 46779999999999999999987632 469999999999999999987754 2 2 14699999999886
Q ss_pred --CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC----------------------
Q 022698 183 --PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL---------------------- 238 (293)
Q Consensus 183 --~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---------------------- 238 (293)
++++++||+|+++.++++++ ++..+++++.++|||||++++.+.
T Consensus 159 ~~~~~~~~fD~V~~~~~l~~~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (383)
T 4fsd_A 159 PEGVPDSSVDIVISNCVCNLST------------NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLG 226 (383)
T ss_dssp SCCCCTTCEEEEEEESCGGGCS------------CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCT
T ss_pred cCCCCCCCEEEEEEccchhcCC------------CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccc
Confidence 77788999999999999988 788999999999999999998542
Q ss_pred --CCchHHHHHHHHcCCcceEEeee
Q 022698 239 --LHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 239 --~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
....++.++++++||+.+++...
T Consensus 227 ~~~~~~~~~~ll~~aGF~~v~~~~~ 251 (383)
T 4fsd_A 227 GALYLEDFRRLVAEAGFRDVRLVSV 251 (383)
T ss_dssp TCCBHHHHHHHHHHTTCCCEEEEEE
T ss_pred cCCCHHHHHHHHHHCCCceEEEEec
Confidence 22368999999999998877653
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=140.76 Aligned_cols=157 Identities=16% Similarity=0.089 Sum_probs=112.2
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-CCCCCccc
Q 022698 113 WSTVKTALDIGCG-RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-PFGDNYFD 190 (293)
Q Consensus 113 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD 190 (293)
..++.+|||+||| +|.++..+++.. +.+|+++|+|+.+++.+++++..++. +++++++|+..+ ++++++||
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD 125 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-----NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFD 125 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEE
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCcee
Confidence 3567899999999 999999998774 25999999999999999999999886 599999997543 34468899
Q ss_pred EEEecchhhhhccccCcch-------hhhHHHHHHHHHHHHHcccCCcEEEEEcCC---CchHHHHHHHHcCCcceEEee
Q 022698 191 VVVSAAFFHTVGKEYGHRT-------VEAAAERMRVLGEMVRVLKPGGVGVVWDLL---HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~l~~~gf~~~~~~~ 260 (293)
+|++|+||++.+....... .........+++++.++|+|||+++++... ...++.+.+++.||....+ +
T Consensus 126 ~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~ 204 (230)
T 3evz_A 126 VIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDI-K 204 (230)
T ss_dssp EEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE-E
T ss_pred EEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEE-E
Confidence 9999999977652110000 000123478999999999999999885432 2457888899999965444 3
Q ss_pred eeccceecceeeeeecCC
Q 022698 261 RVTAFMVSSHIVSFRKPS 278 (293)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~ 278 (293)
...++. ..+++.+.|..
T Consensus 205 ~~~g~~-~~~~l~f~~~~ 221 (230)
T 3evz_A 205 FKVGTR-WRHSLIFFKGI 221 (230)
T ss_dssp ECCCC--CEEEEEEECCC
T ss_pred ecCCCe-EEEEEEEeccc
Confidence 344433 33567766643
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.1e-18 Score=147.40 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=117.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.+++.+. ..++.+|||||||+|..+..+++..+ .+|+|+|+|+.+++.+++++...++.+++++..+|+.+
T Consensus 60 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (302)
T 3hem_A 60 KRKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-----VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE 133 (302)
T ss_dssp HHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-----CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG
T ss_pred HHHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-----CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH
Confidence 4445565553 46778999999999999999988764 58999999999999999999998887789999999987
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------------
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------------- 239 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 239 (293)
+ +++||+|+++.++++++......+ .++...+++++.++|||||++++.+..
T Consensus 134 ~---~~~fD~v~~~~~~~~~~d~~~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (302)
T 3hem_A 134 F---DEPVDRIVSLGAFEHFADGAGDAG---FERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFI 207 (302)
T ss_dssp C---CCCCSEEEEESCGGGTTCCSSCCC---TTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHH
T ss_pred c---CCCccEEEEcchHHhcCccccccc---hhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchH
Confidence 5 678999999999999852110000 126689999999999999999984421
Q ss_pred --------------CchHHHHHHHHcCCcceEEeee
Q 022698 240 --------------HVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 240 --------------~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
...++.+.++++||+.+++...
T Consensus 208 ~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~ 243 (302)
T 3hem_A 208 KFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRI 243 (302)
T ss_dssp HHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEEEeC
Confidence 1236888889999998877543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-18 Score=142.55 Aligned_cols=165 Identities=13% Similarity=0.145 Sum_probs=119.4
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC----ceE
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE----YVT 173 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~----~v~ 173 (293)
..+...+.+++.+.. .++.+|||+|||+|.++..+++..+ ..+++++|+|+.+++.+++++...++.+ +++
T Consensus 13 ~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~ 87 (219)
T 3jwg_A 13 LNQQRLGTVVAVLKS-VNAKKVIDLGCGEGNLLSLLLKDKS----FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRIS 87 (219)
T ss_dssp HHHHHHHHHHHHHHH-TTCCEEEEETCTTCHHHHHHHTSTT----CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEE
T ss_pred chHHHHHHHHHHHhh-cCCCEEEEecCCCCHHHHHHHhcCC----CCEEEEEECCHHHHHHHHHHHHhhccccccCcceE
Confidence 444455555555532 4567999999999999998887643 3699999999999999999988776543 699
Q ss_pred EEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--------------
Q 022698 174 AREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-------------- 239 (293)
Q Consensus 174 ~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------- 239 (293)
+.++|+...+...++||+|+++.++++++ ..+...+++++.++|||||.++.....
T Consensus 88 ~~~~d~~~~~~~~~~fD~V~~~~~l~~~~----------~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~ 157 (219)
T 3jwg_A 88 LFQSSLVYRDKRFSGYDAATVIEVIEHLD----------ENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNL 157 (219)
T ss_dssp EEECCSSSCCGGGTTCSEEEEESCGGGCC----------HHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----
T ss_pred EEeCcccccccccCCCCEEEEHHHHHhCC----------HHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccc
Confidence 99999987776678999999999999997 224478999999999999977663211
Q ss_pred ---------CchHHH----HHHHHcCCcceEEe--eeeccceecceeeeeecC
Q 022698 240 ---------HVPEYV----RRLQELKMEDIRVS--ERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 240 ---------~~~~~~----~~l~~~gf~~~~~~--~~~~~~~~~~~~~~~~~~ 277 (293)
...++. +++++.||+....- .........+.+..++|.
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 158 RHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred cccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCCccccCCCCeEEEEEecc
Confidence 233455 67788999654331 111112223466666664
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.3e-19 Score=145.39 Aligned_cols=130 Identities=15% Similarity=0.082 Sum_probs=100.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC-----------CCCceEEEEcCCCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG-----------VQEYVTAREGDVRS 181 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~-----------~~~~v~~~~~d~~~ 181 (293)
..++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++..... ...+++++++|+.+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~------g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 93 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 93 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC------CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc
Confidence 356789999999999999998875 4699999999999999998764310 02458999999999
Q ss_pred CCCCC-CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE--EcCC-----------CchHHHHH
Q 022698 182 LPFGD-NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV--WDLL-----------HVPEYVRR 247 (293)
Q Consensus 182 ~~~~~-~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~--~~~~-----------~~~~~~~~ 247 (293)
+++.+ ++||+|+++.++++++ ..+...++++++++|||||++++ .+.. ..+++.++
T Consensus 94 l~~~~~~~fD~v~~~~~l~~l~----------~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~ 163 (203)
T 1pjz_A 94 LTARDIGHCAAFYDRAAMIALP----------ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRV 163 (203)
T ss_dssp STHHHHHSEEEEEEESCGGGSC----------HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHT
T ss_pred CCcccCCCEEEEEECcchhhCC----------HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHH
Confidence 87654 7899999999998886 23567799999999999998443 3321 23456666
Q ss_pred HHHcCCcceEEe
Q 022698 248 LQELKMEDIRVS 259 (293)
Q Consensus 248 l~~~gf~~~~~~ 259 (293)
+.+ ||+.+.+.
T Consensus 164 ~~~-gf~i~~~~ 174 (203)
T 1pjz_A 164 MSG-NWEVTKVG 174 (203)
T ss_dssp SCS-SEEEEEEE
T ss_pred hcC-CcEEEEec
Confidence 666 88765543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-18 Score=145.55 Aligned_cols=140 Identities=15% Similarity=0.103 Sum_probs=115.3
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
....+++.+. ..++.+|||+|||+|.++..+++... .+++++|+|+.+++.+++++... .++.+.+.|+.+
T Consensus 81 ~~~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~-----~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~ 151 (254)
T 1xtp_A 81 GSRNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLY-----ATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMET 151 (254)
T ss_dssp HHHHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHC-----SEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGG
T ss_pred HHHHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhhc-----CEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHH
Confidence 3445555553 35678999999999999998887642 48999999999999999987654 459999999998
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-----------------CCchHH
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-----------------LHVPEY 244 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-----------------~~~~~~ 244 (293)
+++++++||+|+++.++++++ ..++..+++++.++|||||.+++.+. ...+++
T Consensus 152 ~~~~~~~fD~v~~~~~l~~~~----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (254)
T 1xtp_A 152 ATLPPNTYDLIVIQWTAIYLT----------DADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHY 221 (254)
T ss_dssp CCCCSSCEEEEEEESCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHH
T ss_pred CCCCCCCeEEEEEcchhhhCC----------HHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHH
Confidence 877778999999999999986 23688999999999999999998652 123678
Q ss_pred HHHHHHcCCcceEEee
Q 022698 245 VRRLQELKMEDIRVSE 260 (293)
Q Consensus 245 ~~~l~~~gf~~~~~~~ 260 (293)
.++++++||+.+++..
T Consensus 222 ~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 222 KRLFNESGVRVVKEAF 237 (254)
T ss_dssp HHHHHHHTCCEEEEEE
T ss_pred HHHHHHCCCEEEEeee
Confidence 9999999999887764
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=148.19 Aligned_cols=133 Identities=11% Similarity=0.099 Sum_probs=108.5
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+.+..++.+|||+|||+|..+..+++. +.+++|+|+|+.+++.++++... ++.++++|+.++
T Consensus 31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~- 98 (250)
T 2p7i_A 31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH------FNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA- 98 (250)
T ss_dssp HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTT------CSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-
T ss_pred HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHh------CCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-
Confidence 344444443345678999999999999888765 23899999999999999988643 489999999886
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHH-HcccCCcEEEEEcC------------------------
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV-RVLKPGGVGVVWDL------------------------ 238 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~------------------------ 238 (293)
.++++||+|+++.++++++ ++..+++++. ++|||||.+++...
T Consensus 99 ~~~~~fD~v~~~~~l~~~~------------~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (250)
T 2p7i_A 99 QLPRRYDNIVLTHVLEHID------------DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTE 166 (250)
T ss_dssp CCSSCEEEEEEESCGGGCS------------SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCH
T ss_pred CcCCcccEEEEhhHHHhhc------------CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhccc
Confidence 4578899999999999998 8889999999 99999999998542
Q ss_pred ----------CCchHHHHHHHHcCCcceEEee
Q 022698 239 ----------LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 239 ----------~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
....++.++++++||+.++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 198 (250)
T 2p7i_A 167 AEFAHGHRCTYALDTLERDASRAGLQVTYRSG 198 (250)
T ss_dssp HHHHTTCCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccccccccCCHHHHHHHHHHCCCeEEEEee
Confidence 1234788999999999888764
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-18 Score=141.94 Aligned_cols=105 Identities=29% Similarity=0.316 Sum_probs=88.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||+|..+..+++.. .+++++|+|+.+++.++++...++ .+++++++|+.++++++++||+|++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~~D~v~~ 109 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYG------FEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFDYVIF 109 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT------CEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHcC------CEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCCCcEEEEEE
Confidence 46799999999999998887663 399999999999999999988776 4589999999987777789999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+++++... ..++..+++++.++|+|||.+++.+
T Consensus 110 ~~~~~~~~----------~~~~~~~l~~~~~~L~~gG~l~~~~ 142 (227)
T 1ve3_A 110 IDSIVHFE----------PLELNQVFKEVRRVLKPSGKFIMYF 142 (227)
T ss_dssp ESCGGGCC----------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCchHhCC----------HHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99843332 1278899999999999999998743
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-18 Score=142.54 Aligned_cols=127 Identities=21% Similarity=0.147 Sum_probs=107.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
+.++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++. ++.+...|+.+++ .+++||+|
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-~~~~fD~v 106 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA------GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-AIDAYDAV 106 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-CCSCEEEE
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc------CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-CCCcEEEE
Confidence 456789999999999999888865 359999999999999999886 2567889998877 67899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC----------------CCchHHHHHHHHcC-Ccc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL----------------LHVPEYVRRLQELK-MED 255 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----------------~~~~~~~~~l~~~g-f~~ 255 (293)
+++.++++++ .+++..+++++.++|||||.+++... ...+++.++++++| |+.
T Consensus 107 ~~~~~l~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~ 176 (211)
T 3e23_A 107 WAHACLLHVP----------RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWAS 176 (211)
T ss_dssp EECSCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSE
T ss_pred EecCchhhcC----------HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEE
Confidence 9999999987 44788999999999999999988432 24568999999999 999
Q ss_pred eEEeeeec
Q 022698 256 IRVSERVT 263 (293)
Q Consensus 256 ~~~~~~~~ 263 (293)
+++.....
T Consensus 177 ~~~~~~~~ 184 (211)
T 3e23_A 177 VAVESSEG 184 (211)
T ss_dssp EEEEEEEE
T ss_pred EEEEeccC
Confidence 98875433
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=139.28 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=107.4
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
..+++.+....++.+|||+|||+|..+..+++. +.+++++|+|+.+++.+++ .+. .++.+.++|+.++
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~- 102 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL------ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW- 102 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-
Confidence 345555554566779999999999999998876 3599999999999998887 332 4599999999887
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------------- 238 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------------- 238 (293)
.++++||+|+++.++++++ ......+++++.++|+|||.+++.+.
T Consensus 103 ~~~~~~D~v~~~~~l~~~~----------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (218)
T 3ou2_A 103 TPDRQWDAVFFAHWLAHVP----------DDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQD 172 (218)
T ss_dssp CCSSCEEEEEEESCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTT
T ss_pred CCCCceeEEEEechhhcCC----------HHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCC
Confidence 6678999999999999998 12348899999999999999988532
Q ss_pred ----------CCchHHHHHHHHcCCcceEEe
Q 022698 239 ----------LHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 239 ----------~~~~~~~~~l~~~gf~~~~~~ 259 (293)
....++.++++++||+ +...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~aGf~-v~~~ 202 (218)
T 3ou2_A 173 GRSFRIVKVFRSPAELTERLTALGWS-CSVD 202 (218)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTTEE-EEEE
T ss_pred cchhhHhhcCCCHHHHHHHHHHCCCE-EEee
Confidence 1346789999999999 4443
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-17 Score=136.46 Aligned_cols=140 Identities=16% Similarity=0.038 Sum_probs=112.4
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
...++...++..+. ..++.+|||+|||+|.++..+++..+ ..+++++|+|+.+++.+++++..++. ++++++.+
T Consensus 24 ~~~~i~~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~ 97 (204)
T 3e05_A 24 TKQEVRAVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMP----NGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEA 97 (204)
T ss_dssp CCHHHHHHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCT----TSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEEC
T ss_pred ChHHHHHHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeC
Confidence 34455556666664 56778999999999999999998754 46999999999999999999998887 67999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcc
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMED 255 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~ 255 (293)
|+.+.....++||+|+++.+++ +...+++++.++|+|||++++.... ..++..+.+++.|| .
T Consensus 98 d~~~~~~~~~~~D~i~~~~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~-~ 161 (204)
T 3e05_A 98 FAPEGLDDLPDPDRVFIGGSGG---------------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY-M 161 (204)
T ss_dssp CTTTTCTTSCCCSEEEESCCTT---------------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC-E
T ss_pred ChhhhhhcCCCCCEEEECCCCc---------------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC-c
Confidence 9976433346799999987664 3458999999999999999997554 34578888999999 5
Q ss_pred eEEe
Q 022698 256 IRVS 259 (293)
Q Consensus 256 ~~~~ 259 (293)
+++.
T Consensus 162 ~~~~ 165 (204)
T 3e05_A 162 VEVA 165 (204)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 5443
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=150.12 Aligned_cols=144 Identities=19% Similarity=0.160 Sum_probs=113.0
Q ss_pred ccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 022698 89 GNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV 168 (293)
Q Consensus 89 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~ 168 (293)
+..|.........+.+.+++.+. ..++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++.
T Consensus 9 a~~y~~~~~~~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~----- 76 (261)
T 3ege_A 9 GKQYSQTRVPDIRIVNAIINLLN-LPKGSVIADIGAGTGGYSVALANQ------GLFVYAVEPSIVMRQQAVVHP----- 76 (261)
T ss_dssp ----CCSBCCCHHHHHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHTT------TCEEEEECSCHHHHHSSCCCT-----
T ss_pred HHHHhhcccccHHHHHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHhC------CCEEEEEeCCHHHHHHHHhcc-----
Confidence 33444444555667777777775 456789999999999999988862 469999999999888766543
Q ss_pred CCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---------
Q 022698 169 QEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--------- 239 (293)
Q Consensus 169 ~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--------- 239 (293)
++.+.+.|+.++++++++||+|+++.++++++ ++..+++++.++|| ||++++.+..
T Consensus 77 --~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~------------~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~ 141 (261)
T 3ege_A 77 --QVEWFTGYAENLALPDKSVDGVISILAIHHFS------------HLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWL 141 (261)
T ss_dssp --TEEEECCCTTSCCSCTTCBSEEEEESCGGGCS------------SHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGG
T ss_pred --CCEEEECchhhCCCCCCCEeEEEEcchHhhcc------------CHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHH
Confidence 48999999999888788999999999999998 88999999999999 9987774432
Q ss_pred ----------------CchHHHHHHHHcCCcceEEee
Q 022698 240 ----------------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 ----------------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
..+++. +|+++||+.+++..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~ 177 (261)
T 3ege_A 142 YDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIP 177 (261)
T ss_dssp GGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEE
T ss_pred HHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEE
Confidence 112455 89999999887754
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-18 Score=140.30 Aligned_cols=141 Identities=18% Similarity=0.085 Sum_probs=109.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~I 192 (293)
++.+|||+|||+|.++..+++..+ +.+++|+|+|+.+++.|++++..+++ +++.++++|+.+++ +++++||+|
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p----~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i 115 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNP----DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRL 115 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCC----CCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEE
Confidence 467899999999999999998876 46999999999999999999998887 57999999998865 567789999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEEeeeecc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
+++++..+........ ......+++++.++|+|||.+++.... ......+.+.+.||..+.+..++..
T Consensus 116 ~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~ 185 (214)
T 1yzh_A 116 YLNFSDPWPKKRHEKR----RLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDLHA 185 (214)
T ss_dssp EEESCCCCCSGGGGGG----STTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGGG
T ss_pred EEECCCCccccchhhh----ccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeeccccccc
Confidence 9996643221000000 002357899999999999999885432 2345677888999998888776554
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=147.16 Aligned_cols=130 Identities=25% Similarity=0.299 Sum_probs=109.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
+.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...+...++.+.++|+.+++ ++++||+|+++
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~ 139 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASP------ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDY 139 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBT------TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEE
T ss_pred CCCEEEeCCCCCHHHHHHHhC------CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEC
Confidence 459999999999999877642 56999999999999999999877555567999999999875 45689999999
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC------------CchHHHHHHHHcCCcceEEeeee
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------HVPEYVRRLQELKMEDIRVSERV 262 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------~~~~~~~~l~~~gf~~~~~~~~~ 262 (293)
.++++++ .++...+++++.++|+|||.+++.... ...++.++++++||+.+++....
T Consensus 140 ~~l~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 208 (235)
T 3lcc_A 140 VFFCAIE----------PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENP 208 (235)
T ss_dssp SSTTTSC----------GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECT
T ss_pred hhhhcCC----------HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecC
Confidence 9999887 237789999999999999999986542 34679999999999988876543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=135.47 Aligned_cols=145 Identities=14% Similarity=0.208 Sum_probs=115.7
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEEcCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE-YVTAREGDV 179 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~-~v~~~~~d~ 179 (293)
...+.+++.+. ..++.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++..++..+ ++.+...|+
T Consensus 39 ~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~ 111 (194)
T 1dus_A 39 KGTKILVENVV-VDKDDDILDLGCGYGVIGIALADE------VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL 111 (194)
T ss_dssp HHHHHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST
T ss_pred hHHHHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECch
Confidence 45666777664 356789999999999999888765 3599999999999999999998887644 599999999
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHcCCcceE
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELKMEDIR 257 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~gf~~~~ 257 (293)
.+. .+.++||+|++++++++.. .+...+++++.++|+|||.+++..... .+++.+.+++. |..++
T Consensus 112 ~~~-~~~~~~D~v~~~~~~~~~~-----------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-~~~~~ 178 (194)
T 1dus_A 112 YEN-VKDRKYNKIITNPPIRAGK-----------EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV-FGNVE 178 (194)
T ss_dssp TTT-CTTSCEEEEEECCCSTTCH-----------HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH-HSCCE
T ss_pred hcc-cccCCceEEEECCCcccch-----------hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH-hcceE
Confidence 873 4467899999999887621 267789999999999999999866543 34577778777 77787
Q ss_pred Eeeeeccc
Q 022698 258 VSERVTAF 265 (293)
Q Consensus 258 ~~~~~~~~ 265 (293)
+.....++
T Consensus 179 ~~~~~~~~ 186 (194)
T 1dus_A 179 TVTIKGGY 186 (194)
T ss_dssp EEEEETTE
T ss_pred EEecCCcE
Confidence 77666664
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-18 Score=144.68 Aligned_cols=138 Identities=21% Similarity=0.285 Sum_probs=113.1
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+...+ .++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++.. ..++.++++|+.+
T Consensus 43 ~~~~l~~~~---~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~ 109 (242)
T 3l8d_A 43 IIPFFEQYV---KKEAEVLDVGCGDGYGTYKLSRT------GYKAVGVDISEVMIQKGKERGE----GPDLSFIKGDLSS 109 (242)
T ss_dssp HHHHHHHHS---CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHTTTC----BTTEEEEECBTTB
T ss_pred HHHHHHHHc---CCCCeEEEEcCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhcc----cCCceEEEcchhc
Confidence 344444443 35679999999999999988876 3599999999999999887742 2459999999999
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-----------------------
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL----------------------- 238 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----------------------- 238 (293)
+++++++||+|+++.++++++ ++..+++++.++|+|||.+++...
T Consensus 110 ~~~~~~~fD~v~~~~~l~~~~------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (242)
T 3l8d_A 110 LPFENEQFEAIMAINSLEWTE------------EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNT 177 (242)
T ss_dssp CSSCTTCEEEEEEESCTTSSS------------CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCC
T ss_pred CCCCCCCccEEEEcChHhhcc------------CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccC
Confidence 887788999999999999998 888999999999999999998542
Q ss_pred CCchHHHHHHHHcCCcceEEeeeecc
Q 022698 239 LHVPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 239 ~~~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
....++.++++++||+.++.......
T Consensus 178 ~~~~~~~~~l~~~Gf~~~~~~~~~~~ 203 (242)
T 3l8d_A 178 MMPWEFEQLVKEQGFKVVDGIGVYKR 203 (242)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEEEECT
T ss_pred CCHHHHHHHHHHcCCEEEEeeccccc
Confidence 22357899999999999887654443
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-18 Score=145.50 Aligned_cols=105 Identities=26% Similarity=0.359 Sum_probs=91.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
...++.+|||+|||+|..+..+++. +.+++++|+|+.+++.+++++ . +...++.+..+|+.++++++++||+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~~~~~~~fD~ 107 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR------GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAIPLPDESVHG 107 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT------TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSCCSCTTCEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccCCCCCCCeeE
Confidence 4556789999999999999888765 359999999999999999987 2 2235699999999988877889999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|+++.++++++ ++..+++++.++|+|||.+++.
T Consensus 108 v~~~~~l~~~~------------~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 108 VIVVHLWHLVP------------DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp EEEESCGGGCT------------THHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCchhhcC------------CHHHHHHHHHHHCCCCcEEEEE
Confidence 99999999998 7889999999999999999874
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=146.52 Aligned_cols=140 Identities=15% Similarity=0.151 Sum_probs=114.9
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.+++.+. ..++.+|||+|||+|..+..+++... .+|+++|+|+.+++.++++....++.+++.+..+|+.+
T Consensus 78 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 151 (318)
T 2fk8_A 78 KVDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-----VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED 151 (318)
T ss_dssp HHHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-----CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred HHHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHCC-----CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH
Confidence 4445555543 45778999999999999999987752 59999999999999999999988877789999999987
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------------
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------------- 239 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 239 (293)
++ ++||+|+++.++++++ ..++..+++++.++|||||.+++.+..
T Consensus 152 ~~---~~fD~v~~~~~l~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (318)
T 2fk8_A 152 FA---EPVDRIVSIEAFEHFG----------HENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFI 218 (318)
T ss_dssp CC---CCCSEEEEESCGGGTC----------GGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHH
T ss_pred CC---CCcCEEEEeChHHhcC----------HHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchh
Confidence 64 6899999999999984 127889999999999999999984321
Q ss_pred --------------CchHHHHHHHHcCCcceEEee
Q 022698 240 --------------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 --------------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
..+++.++++++||+.+++..
T Consensus 219 ~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~ 253 (318)
T 2fk8_A 219 KFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLS 253 (318)
T ss_dssp HHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEE
T ss_pred hHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEEEEe
Confidence 234677888999999887654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=141.91 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=106.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
+.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. .++.++++|+.++++++++||+|+++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL------GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT------TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEeh
Confidence 568999999999999888876 359999999999999998872 34899999999988778899999999
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-----------------CCchHHHHHHHHcCCcceEE
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-----------------LHVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-----------------~~~~~~~~~l~~~gf~~~~~ 258 (293)
.++++++ .+++..+++++.++|+|||.+++... ...+++.++++++||+.+++
T Consensus 110 ~~l~~~~----------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 179 (203)
T 3h2b_A 110 YSLIHMG----------PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSS 179 (203)
T ss_dssp SSSTTCC----------TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEE
T ss_pred hhHhcCC----------HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEE
Confidence 9999886 23778999999999999999998542 23578999999999998887
Q ss_pred eeeec
Q 022698 259 SERVT 263 (293)
Q Consensus 259 ~~~~~ 263 (293)
.....
T Consensus 180 ~~~~~ 184 (203)
T 3h2b_A 180 HWDPR 184 (203)
T ss_dssp EECTT
T ss_pred EecCC
Confidence 65433
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=142.10 Aligned_cols=179 Identities=14% Similarity=0.085 Sum_probs=119.4
Q ss_pred HHHHHhhcccccccchhhhhhHhhhcccccccCccchHHHHHHHHHh-cCCCCCCCeEEEEcCCCChHHHHHHHHhhhcC
Q 022698 63 LEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGS-VNDWSTVKTALDIGCGRGILLNAVATQFKKTG 141 (293)
Q Consensus 63 ~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~ 141 (293)
+.+.++...++ +.++.+..+||..++ ...+.-. .....++.+|||||||+|..++.++...+
T Consensus 41 ~~l~~~~~~~n--------l~~i~~~~~~~~~~~------~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~~--- 103 (249)
T 3g89_A 41 ALLQEASGKVN--------LTALRGEEEVVVKHF------LDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRP--- 103 (249)
T ss_dssp HHHHHC------------------CHHHHHHHHH------HHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHCT---
T ss_pred HHHHHHhcCCC--------CceECCHHHHhhcee------eechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHCC---
Confidence 44555556666 666666555553332 1111111 11134577999999999999999998766
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC---CCcccEEEecchhhhhccccCcchhhhHHHHHH
Q 022698 142 SLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG---DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMR 218 (293)
Q Consensus 142 ~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (293)
+.+|+++|+|+.+++.++++++.+++.+ ++++++|+.+++.. .++||+|+|+.+ . +...
T Consensus 104 -~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I~s~a~----~------------~~~~ 165 (249)
T 3g89_A 104 -ELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARAVARAV----A------------PLCV 165 (249)
T ss_dssp -TCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEEEEESS----C------------CHHH
T ss_pred -CCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEEEECCc----C------------CHHH
Confidence 4699999999999999999999998754 99999999876532 478999999743 2 4567
Q ss_pred HHHHHHHcccCCcEEEEEcCCC-ch---HHHHHHHHcCCcceEEeee-eccceecceeeeeec
Q 022698 219 VLGEMVRVLKPGGVGVVWDLLH-VP---EYVRRLQELKMEDIRVSER-VTAFMVSSHIVSFRK 276 (293)
Q Consensus 219 ~l~~~~~~LkpgG~l~~~~~~~-~~---~~~~~l~~~gf~~~~~~~~-~~~~~~~~~~~~~~~ 276 (293)
+++.+.++|||||+++++.... .+ +....+.+.||...++..- +.+....++++.++|
T Consensus 166 ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k 228 (249)
T 3g89_A 166 LSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEK 228 (249)
T ss_dssp HHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEe
Confidence 8999999999999998865432 22 3556677889998877643 222233345666665
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=142.78 Aligned_cols=116 Identities=19% Similarity=0.301 Sum_probs=98.1
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
........+++.+. ..++.+|||+|||+|..+..+++.++ +.+++++|+|+.+++.++++ .+++.+...
T Consensus 17 ~~~~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~ 85 (259)
T 2p35_A 17 ERTRPARDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYG----VNVITGIDSDDDMLEKAADR------LPNTNFGKA 85 (259)
T ss_dssp GGGHHHHHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHC----TTSEEEEESCHHHHHHHHHH------STTSEEEEC
T ss_pred HHHHHHHHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHh------CCCcEEEEC
Confidence 34445556666664 45678999999999999999998875 46999999999999999887 135899999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|+.+++ ++++||+|+++.++++++ ++..+++++.++|+|||.+++..
T Consensus 86 d~~~~~-~~~~fD~v~~~~~l~~~~------------~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 86 DLATWK-PAQKADLLYANAVFQWVP------------DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp CTTTCC-CSSCEEEEEEESCGGGST------------THHHHHHHHGGGEEEEEEEEEEE
T ss_pred ChhhcC-ccCCcCEEEEeCchhhCC------------CHHHHHHHHHHhcCCCeEEEEEe
Confidence 999877 678899999999999998 88899999999999999998853
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.2e-18 Score=146.82 Aligned_cols=137 Identities=21% Similarity=0.262 Sum_probs=104.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-------------------------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ------------------------- 169 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~------------------------- 169 (293)
++.+|||||||+|..+..+++.++ ..+|+|+|+|+.+++.|++++...+..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~----~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWG----PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVR 121 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTC----CSEEEEEESCHHHHHHHHHTC-------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcC----CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 578999999999999999998875 469999999999999999987654322
Q ss_pred --------------------------------CceEEEEcCCCCCC-----CCCCcccEEEecchhhhhccccCcchhhh
Q 022698 170 --------------------------------EYVTAREGDVRSLP-----FGDNYFDVVVSAAFFHTVGKEYGHRTVEA 212 (293)
Q Consensus 170 --------------------------------~~v~~~~~d~~~~~-----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~ 212 (293)
.++.|.++|+...+ +..++||+|+|+.+++++.. .-.
T Consensus 122 ~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl------~~~ 195 (292)
T 3g07_A 122 KRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL------NWG 195 (292)
T ss_dssp --------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHH------HHH
T ss_pred ccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhh------cCC
Confidence 47999999998643 35688999999999866520 001
Q ss_pred HHHHHHHHHHHHHcccCCcEEEEEcC-----------------------CCchHHHHHHHH--cCCcceEEeee
Q 022698 213 AAERMRVLGEMVRVLKPGGVGVVWDL-----------------------LHVPEYVRRLQE--LKMEDIRVSER 261 (293)
Q Consensus 213 ~~~~~~~l~~~~~~LkpgG~l~~~~~-----------------------~~~~~~~~~l~~--~gf~~~~~~~~ 261 (293)
..+...++++++++|+|||+|++... ....++.+.|.+ +||+.+++...
T Consensus 196 ~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 196 DEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 33778899999999999999998421 123467778887 89998887654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-18 Score=144.89 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=112.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh---cCCCCceEEEEcCCCCC------
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM---EGVQEYVTAREGDVRSL------ 182 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~---~~~~~~v~~~~~d~~~~------ 182 (293)
...++.+|||+|||+|.++..+++..+ ..+++++|+++.+++.|++|+.. +++.+++.++++|+.+.
T Consensus 33 ~~~~~~~VLDlG~G~G~~~l~la~~~~----~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~ 108 (260)
T 2ozv_A 33 ADDRACRIADLGAGAGAAGMAVAARLE----KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVE 108 (260)
T ss_dssp CCCSCEEEEECCSSSSHHHHHHHHHCT----TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHH
T ss_pred cccCCCEEEEeCChHhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhh
Confidence 345677999999999999999998865 46999999999999999999988 88877899999999886
Q ss_pred -CCCCCcccEEEecchhhhhcccc------CcchhhhHHHHHHHHHHHHHcccCCcEEEEEc-CCCchHHHHHHHHcCCc
Q 022698 183 -PFGDNYFDVVVSAAFFHTVGKEY------GHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD-LLHVPEYVRRLQELKME 254 (293)
Q Consensus 183 -~~~~~~fD~Iv~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~l~~~gf~ 254 (293)
.++.++||+|++|+||....... ..+..........+++.+.++|+|||.++++. ....+++.+.+++. |.
T Consensus 109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~ 187 (260)
T 2ozv_A 109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FG 187 (260)
T ss_dssp TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EE
T ss_pred hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CC
Confidence 24467899999999987642000 00000111135678999999999999998754 33445677777664 77
Q ss_pred ceEEeeeeccc--eecceeeeeecC
Q 022698 255 DIRVSERVTAF--MVSSHIVSFRKP 277 (293)
Q Consensus 255 ~~~~~~~~~~~--~~~~~~~~~~~~ 277 (293)
.+++....... ....-++.++|.
T Consensus 188 ~~~i~~v~~~~~~~~~~~lv~~~k~ 212 (260)
T 2ozv_A 188 GLEITLIHPRPGEDAVRMLVTAIKG 212 (260)
T ss_dssp EEEEEEEESSTTSCCCEEEEEEEET
T ss_pred ceEEEEEcCCCCCCceEEEEEEEeC
Confidence 77766544332 212235556654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=135.26 Aligned_cols=128 Identities=23% Similarity=0.328 Sum_probs=105.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++. +.+++++|+|+.+++.+++++...+. +++.+...|+.++++ +++||+|+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~~D~v~ 102 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAAN------GYDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDLNNLTF-DRQYDFIL 102 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECCGGGCCC-CCCEEEEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHhCCC-CCcEEEEcchhhCCC-CCCceEEE
Confidence 45679999999999999988875 35999999999999999999888776 349999999998776 78899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC---------------CCchHHHHHHHHcCCcceEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL---------------LHVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---------------~~~~~~~~~l~~~gf~~~~~ 258 (293)
++.++++++ .++...+++++.++|+|||.+++++. ...+++.+++.+ |+.++.
T Consensus 103 ~~~~l~~~~----------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~ 170 (199)
T 2xvm_A 103 STVVLMFLE----------AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKY 170 (199)
T ss_dssp EESCGGGSC----------GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred EcchhhhCC----------HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEe
Confidence 999999876 23678899999999999999877531 134567777765 887776
Q ss_pred eee
Q 022698 259 SER 261 (293)
Q Consensus 259 ~~~ 261 (293)
.+.
T Consensus 171 ~~~ 173 (199)
T 2xvm_A 171 NED 173 (199)
T ss_dssp ECC
T ss_pred ccc
Confidence 543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=136.87 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=108.4
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
..++...++..+. ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++++.+++.++++++.+|
T Consensus 40 ~~~~~~~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d 112 (204)
T 3njr_A 40 KSPMRALTLAALA-PRRGELLWDIGGGSGSVSVEWCLA------GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGT 112 (204)
T ss_dssp CHHHHHHHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred cHHHHHHHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCc
Confidence 3445555666554 466789999999999999998876 359999999999999999999999886579999999
Q ss_pred CCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcce
Q 022698 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDI 256 (293)
Q Consensus 179 ~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~ 256 (293)
+.+......+||+|+++..+ +.. +++++.++|+|||++++.... ...+..+.+++.|++..
T Consensus 113 ~~~~~~~~~~~D~v~~~~~~----------------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~ 175 (204)
T 3njr_A 113 APAALADLPLPEAVFIGGGG----------------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLL 175 (204)
T ss_dssp TTGGGTTSCCCSEEEECSCC----------------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEE
T ss_pred hhhhcccCCCCCEEEECCcc----------------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEE
Confidence 98732234579999987633 234 899999999999999986553 34567788899998766
Q ss_pred EEe
Q 022698 257 RVS 259 (293)
Q Consensus 257 ~~~ 259 (293)
++.
T Consensus 176 ~i~ 178 (204)
T 3njr_A 176 RID 178 (204)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.2e-18 Score=143.48 Aligned_cols=136 Identities=18% Similarity=0.244 Sum_probs=108.7
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
..+.+.+...+....++.+|||||||+|.++..+++. +.+++|+|+|+.+++.++++ +.+...|+
T Consensus 26 ~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~ 90 (240)
T 3dli_A 26 ELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE------GIESIGVDINEDMIKFCEGK---------FNVVKSDA 90 (240)
T ss_dssp HHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH------TCCEEEECSCHHHHHHHHTT---------SEEECSCH
T ss_pred HHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC------CCcEEEEECCHHHHHHHHhh---------cceeeccH
Confidence 3455555555555567789999999999999888775 35899999999999888765 57888888
Q ss_pred CCC--CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------
Q 022698 180 RSL--PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------- 238 (293)
Q Consensus 180 ~~~--~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------- 238 (293)
.+. ++++++||+|+++.++++++ ..+...+++++.++|||||.+++...
T Consensus 91 ~~~~~~~~~~~fD~i~~~~~l~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 160 (240)
T 3dli_A 91 IEYLKSLPDKYLDGVMISHFVEHLD----------PERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKK 160 (240)
T ss_dssp HHHHHTSCTTCBSEEEEESCGGGSC----------GGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCS
T ss_pred HHHhhhcCCCCeeEEEECCchhhCC----------cHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccc
Confidence 774 56778999999999999987 22458999999999999999988432
Q ss_pred -CCchHHHHHHHHcCCcceEEee
Q 022698 239 -LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 239 -~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
....++.++++++||+.+++..
T Consensus 161 ~~~~~~l~~~l~~aGf~~~~~~~ 183 (240)
T 3dli_A 161 PVHPETLKFILEYLGFRDVKIEF 183 (240)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEEE
T ss_pred cCCHHHHHHHHHHCCCeEEEEEE
Confidence 1235788999999999877654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=141.85 Aligned_cols=128 Identities=21% Similarity=0.214 Sum_probs=107.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.+|||+|||+|..+..+++.. ..+++++|+|+.+++.++++... .++.+.+.|+.++++++++||+|
T Consensus 41 ~~~~~~vLdiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 41 EVGGLRIVDLGCGFGWFCRWAHEHG-----ASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEEEE
T ss_pred ccCCCEEEEEcCcCCHHHHHHHHCC-----CCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCceEE
Confidence 3467899999999999998887651 13999999999999999887643 24899999999887777899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC----------------------------------
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL---------------------------------- 238 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---------------------------------- 238 (293)
+++.++++++ ++..+++++.++|+|||.+++...
T Consensus 112 ~~~~~l~~~~------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (243)
T 3bkw_A 112 YSSLALHYVE------------DVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRK 179 (243)
T ss_dssp EEESCGGGCS------------CHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEEC
T ss_pred EEeccccccc------------hHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeeccccccccee
Confidence 9999999987 788999999999999999988431
Q ss_pred ------------CCchHHHHHHHHcCCcceEEeee
Q 022698 239 ------------LHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 239 ------------~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
.+.+++.++|+++||+.+++.+.
T Consensus 180 ~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 180 TDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp TTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred eeeccCceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 13467889999999998887653
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-17 Score=144.40 Aligned_cols=141 Identities=21% Similarity=0.314 Sum_probs=115.8
Q ss_pred HHHHHHhcCCC--CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 103 AQRMVGSVNDW--STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 103 ~~~l~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
...+++.+. . .+..+|||+|||+|..+..+++..+ +.+++++|+| .+++.++++....++.+++++..+|+.
T Consensus 152 ~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 225 (335)
T 2r3s_A 152 AQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNP----NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAF 225 (335)
T ss_dssp HHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCT----TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTT
T ss_pred HHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCC----CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccc
Confidence 334555443 3 5678999999999999999998876 4699999999 999999999988887778999999998
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---------------------
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--------------------- 239 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 239 (293)
+.+++. .||+|+++.++++++ .++...+++++.++|+|||++++++..
T Consensus 226 ~~~~~~-~~D~v~~~~~l~~~~----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 294 (335)
T 2r3s_A 226 EVDYGN-DYDLVLLPNFLHHFD----------VATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLAT 294 (335)
T ss_dssp TSCCCS-CEEEEEEESCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHH
T ss_pred cCCCCC-CCcEEEEcchhccCC----------HHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHee
Confidence 866544 499999999999886 236679999999999999999886532
Q ss_pred -------CchHHHHHHHHcCCcceEEee
Q 022698 240 -------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 -------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
..+++.++++++||+.+++..
T Consensus 295 ~~~~~~~t~~~~~~ll~~aGf~~~~~~~ 322 (335)
T 2r3s_A 295 TPNGDAYTFAEYESMFSNAGFSHSQLHS 322 (335)
T ss_dssp SSSCCCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCCcCCHHHHHHHHHHCCCCeeeEEE
Confidence 134688899999999988764
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=144.01 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=122.6
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+. ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++++...+..+++++..+|+.+.+
T Consensus 180 ~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 253 (359)
T 1x19_A 180 QLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFP----ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 253 (359)
T ss_dssp HHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCT----TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC
T ss_pred HHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCC----CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC
Confidence 34555543 45678999999999999999998876 469999999 9999999999998887778999999998876
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------------- 238 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------------- 238 (293)
+++ +|+|+++.++++++ +++...+++++.+.|+|||++++++.
T Consensus 254 ~~~--~D~v~~~~vlh~~~----------d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~ 321 (359)
T 1x19_A 254 YPE--ADAVLFCRILYSAN----------EQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFS 321 (359)
T ss_dssp CCC--CSEEEEESCGGGSC----------HHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCC
T ss_pred CCC--CCEEEEechhccCC----------HHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCc
Confidence 543 49999999999887 23478999999999999999988651
Q ss_pred ----CCchHHHHHHHHcCCcceEEeeeeccceecceeeeeecC
Q 022698 239 ----LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 239 ----~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
...+++.++++++||+.+++.... . ..++.++||
T Consensus 322 ~~~~~t~~e~~~ll~~aGf~~v~~~~~~--~---~~vi~a~kp 359 (359)
T 1x19_A 322 VLGFKEQARYKEILESLGYKDVTMVRKY--D---HLLVQAVKP 359 (359)
T ss_dssp CCCCCCGGGHHHHHHHHTCEEEEEEEET--T---EEEEEEECC
T ss_pred ccCCCCHHHHHHHHHHCCCceEEEEecC--C---ceEEEEeCC
Confidence 344678999999999988877532 2 257777764
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-17 Score=147.87 Aligned_cols=144 Identities=17% Similarity=0.187 Sum_probs=118.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC--CCCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL--PFGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~I 192 (293)
+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++++...++.+++++..+|+.+. |++ ++||+|
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v 252 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNK----EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAV 252 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHST----TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCC----CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEE
Confidence 457999999999999999998876 569999999 999999999998888777899999999885 344 689999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------------------------Cc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-------------------------------HV 241 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------------------~~ 241 (293)
++..++|+++ .++...+++++++.|+|||++++++.. ..
T Consensus 253 ~~~~vlh~~~----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 322 (363)
T 3dp7_A 253 WMSQFLDCFS----------EEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHS 322 (363)
T ss_dssp EEESCSTTSC----------HHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCH
T ss_pred EEechhhhCC----------HHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCH
Confidence 9999999887 335578999999999999999985531 23
Q ss_pred hHHHHHHHHcCCcceEEeeeeccceecceeeeeecC
Q 022698 242 PEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
+++.++++++||+.+++........ .++.+++.
T Consensus 323 ~e~~~ll~~AGf~~v~~~~~~g~~~---svi~~~~~ 355 (363)
T 3dp7_A 323 DDLIRCIENAGLEVEEIQDNIGLGH---SILQCRLK 355 (363)
T ss_dssp HHHHHHHHTTTEEESCCCCCBTTTB---EEEEEEEC
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCCc---eEEEEeec
Confidence 5788999999999998876554432 45555554
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=144.07 Aligned_cols=118 Identities=17% Similarity=0.214 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC--CceEEEEc
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ--EYVTAREG 177 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~--~~v~~~~~ 177 (293)
....+.+++.+.. ++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+.. .++.++++
T Consensus 69 ~~~~~~~~~~~~~--~~~~vLDlGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~ 140 (299)
T 3g2m_A 69 TSEAREFATRTGP--VSGPVLELAAGMGRLTFPFLDL------GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG 140 (299)
T ss_dssp HHHHHHHHHHHCC--CCSCEEEETCTTTTTHHHHHTT------TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEEC
T ss_pred cHHHHHHHHhhCC--CCCcEEEEeccCCHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeC
Confidence 4455666666642 3449999999999999988865 358999999999999999998876532 46999999
Q ss_pred CCCCCCCCCCcccEEEec-chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSA-AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|+.++++ +++||+|++. .++++.+ .++...+++++.++|+|||.|++.
T Consensus 141 d~~~~~~-~~~fD~v~~~~~~~~~~~----------~~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 141 DMSAFAL-DKRFGTVVISSGSINELD----------EADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp BTTBCCC-SCCEEEEEECHHHHTTSC----------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhcCCc-CCCcCEEEECCcccccCC----------HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999876 6789999865 6666665 336789999999999999999883
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.2e-18 Score=145.26 Aligned_cols=134 Identities=19% Similarity=0.111 Sum_probs=100.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC-------------------------
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV------------------------- 168 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~------------------------- 168 (293)
.++.+|||||||+|..+..++... ..+|+|+|+|+.|++.|+++++....
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~-----~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~ 128 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDS-----FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE 128 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-----EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhh-----hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHH
Confidence 456789999999998765544331 23799999999999999987654320
Q ss_pred ---CCceE-EEEcCCCCC-CC---CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC--
Q 022698 169 ---QEYVT-AREGDVRSL-PF---GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-- 238 (293)
Q Consensus 169 ---~~~v~-~~~~d~~~~-~~---~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-- 238 (293)
..++. ++++|+.+. |+ ..++||+|+++.+++++.+. .++...++++++++|||||.|++.+.
T Consensus 129 ~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~--------~~~~~~~l~~i~r~LKPGG~li~~~~~~ 200 (263)
T 2a14_A 129 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCS--------LDAYRAALCNLASLLKPGGHLVTTVTLR 200 (263)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSS--------HHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCC--------HHHHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 01243 889999873 32 25689999999999886311 22778899999999999999998642
Q ss_pred ---------------CCchHHHHHHHHcCCcceEEee
Q 022698 239 ---------------LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 239 ---------------~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
...+++.+.|+++||+.++...
T Consensus 201 ~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 201 LPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp CCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred CccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEee
Confidence 1345789999999999888765
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=134.72 Aligned_cols=136 Identities=17% Similarity=0.116 Sum_probs=105.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||+|.++..+++. . +++|+|+|+.|++. .++++++++|+.+ ++++++||+|++
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~------~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~-~~~~~~fD~i~~ 84 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKR------N-TVVSTDLNIRALES----------HRGGNLVRADLLC-SINQESVDVVVF 84 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTT------S-EEEEEESCHHHHHT----------CSSSCEEECSTTT-TBCGGGCSEEEE
T ss_pred CCCeEEEeccCccHHHHHHHhc------C-cEEEEECCHHHHhc----------ccCCeEEECChhh-hcccCCCCEEEE
Confidence 4569999999999999888765 4 89999999999876 2458899999988 555689999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCchHHHHHHHHcCCcceEEeeeeccceecceee
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIV 272 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 272 (293)
|+++++.+......+ ..+...+++++.+.| |||.++++. ....+++.+.+++.||+.+.+.++..++. +++
T Consensus 85 n~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e---~~~ 157 (170)
T 3q87_B 85 NPPYVPDTDDPIIGG---GYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGE---TVY 157 (170)
T ss_dssp CCCCBTTCCCTTTBC---CGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECSSS---EEE
T ss_pred CCCCccCCccccccC---CcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccCCc---eEE
Confidence 999987653211000 112346778888888 999998854 44667899999999999999998888877 666
Q ss_pred eee
Q 022698 273 SFR 275 (293)
Q Consensus 273 ~~~ 275 (293)
..+
T Consensus 158 ~~~ 160 (170)
T 3q87_B 158 IIK 160 (170)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-17 Score=135.47 Aligned_cols=135 Identities=14% Similarity=0.107 Sum_probs=103.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||+|..+..++...+ +.+++++|+|+.+++.+++++...+..+ +.+..+|+.+.+ +.++||+|++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~~~D~i~~ 138 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRP----EAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP-SEPPFDGVIS 138 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC-CCSCEEEEEC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCC-ccCCcCEEEE
Confidence 467999999999999999998765 4699999999999999999999888754 999999998865 4578999998
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-CCchHHHHHHHHcCCcceEEe----eeeccceecc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-LHVPEYVRRLQELKMEDIRVS----ERVTAFMVSS 269 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~l~~~gf~~~~~~----~~~~~~~~~~ 269 (293)
+.. . +...+++.+.++|+|||.+++... .+.++..+++. ||+.+++. .+..+. .
T Consensus 139 ~~~----~------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~---~ 197 (207)
T 1jsx_A 139 RAF----A------------SLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGE---R 197 (207)
T ss_dssp SCS----S------------SHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCE---E
T ss_pred ecc----C------------CHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCc---e
Confidence 742 2 456899999999999999988644 33444544443 88877643 222332 2
Q ss_pred eeeeeec
Q 022698 270 HIVSFRK 276 (293)
Q Consensus 270 ~~~~~~~ 276 (293)
+++.++|
T Consensus 198 ~~~~~~k 204 (207)
T 1jsx_A 198 HLVVIKA 204 (207)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 5666555
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-17 Score=135.87 Aligned_cols=114 Identities=20% Similarity=0.309 Sum_probs=93.1
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.++.......++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....+ ++++.++|+.+++
T Consensus 41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~- 110 (216)
T 3ofk_A 41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH------CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS- 110 (216)
T ss_dssp HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG------EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC-
T ss_pred HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC-
Confidence 33443334456779999999999999888765 3599999999999999999877643 5999999999876
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++++||+|+++.++++++. ......+++++.++|||||.+++..
T Consensus 111 ~~~~fD~v~~~~~l~~~~~---------~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 111 TAELFDLIVVAEVLYYLED---------MTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp CSCCEEEEEEESCGGGSSS---------HHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCccEEEEccHHHhCCC---------HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 5789999999999999871 1234678999999999999999854
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-17 Score=141.51 Aligned_cols=144 Identities=17% Similarity=0.080 Sum_probs=112.3
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHH------HHHHHHHHHHhcCCCCceEEE
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR------TTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~------~l~~a~~~~~~~~~~~~v~~~ 175 (293)
....+++.+. ..++.+|||||||+|..+..+++..+ +..+++++|+|+. +++.+++++...+..+++++.
T Consensus 31 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g---~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~ 106 (275)
T 3bkx_A 31 HRLAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVG---SSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVH 106 (275)
T ss_dssp HHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHC---TTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEE
T ss_pred HHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhC---CCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEE
Confidence 3445555553 46778999999999999999988752 1369999999997 999999999888776789999
Q ss_pred EcC---CCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------
Q 022698 176 EGD---VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------- 239 (293)
Q Consensus 176 ~~d---~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------- 239 (293)
..| ...+++++++||+|+++.++++++ ++..+++.+.++++|||.+++.+..
T Consensus 107 ~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~------------~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~ 174 (275)
T 3bkx_A 107 FNTNLSDDLGPIADQHFDRVVLAHSLWYFA------------SANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQ 174 (275)
T ss_dssp CSCCTTTCCGGGTTCCCSEEEEESCGGGSS------------CHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHH
T ss_pred ECChhhhccCCCCCCCEEEEEEccchhhCC------------CHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHH
Confidence 998 344455678999999999999988 5666777777778889999985321
Q ss_pred -----------------------CchHHHHHHHHcCCcceEEeee
Q 022698 240 -----------------------HVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 240 -----------------------~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
...++.++++++||+.++....
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 175 AAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp HHHHHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred HHHHHHHHhhccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 2236778888899988776543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-18 Score=145.93 Aligned_cols=110 Identities=24% Similarity=0.243 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
.++.+.+.+... ...+|||||||+|..+..+++. +.+|+|+|+|+.|++.|+++ +++.+.++|+
T Consensus 27 ~~l~~~l~~~~~---~~~~vLDvGcGtG~~~~~l~~~------~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~ 90 (257)
T 4hg2_A 27 RALFRWLGEVAP---ARGDALDCGCGSGQASLGLAEF------FERVHAVDPGEAQIRQALRH-------PRVTYAVAPA 90 (257)
T ss_dssp HHHHHHHHHHSS---CSSEEEEESCTTTTTHHHHHTT------CSEEEEEESCHHHHHTCCCC-------TTEEEEECCT
T ss_pred HHHHHHHHHhcC---CCCCEEEEcCCCCHHHHHHHHh------CCEEEEEeCcHHhhhhhhhc-------CCceeehhhh
Confidence 456666666543 3468999999999999888765 35999999999998876532 4599999999
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.++++++++||+|+|+.++|+.+ +..++++++|+|||||.|+++..
T Consensus 91 e~~~~~~~sfD~v~~~~~~h~~~-------------~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 91 EDTGLPPASVDVAIAAQAMHWFD-------------LDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp TCCCCCSSCEEEEEECSCCTTCC-------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhcccCCcccEEEEeeehhHhh-------------HHHHHHHHHHHcCCCCEEEEEEC
Confidence 99999999999999999998874 55799999999999999988654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=146.50 Aligned_cols=132 Identities=10% Similarity=0.009 Sum_probs=99.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcE--EEEEeCCHHHHHHHHHHHHhc-CCCCceE--EEEcCCCCCC-----
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGR--VVGLDCKKRTTLSTLRTAKME-GVQEYVT--AREGDVRSLP----- 183 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~--v~~vDis~~~l~~a~~~~~~~-~~~~~v~--~~~~d~~~~~----- 183 (293)
.++.+|||||||+|.++..+++.+...++..+ ++++|+|+.|++.+++++... +. .++. +...+..+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhcc
Confidence 45679999999999988766655543322454 499999999999999987653 33 3344 4455554432
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------------
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------------ 238 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------------ 238 (293)
+++++||+|+++.++++++ ++..++++++++|||||++++...
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVK------------DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQ 197 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCS------------CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCC
T ss_pred ccCCCceeEEEEeeeeeecC------------CHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCccc
Confidence 3468899999999999999 899999999999999999987421
Q ss_pred -CCchHHHHHHHHcCCcceEE
Q 022698 239 -LHVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 239 -~~~~~~~~~l~~~gf~~~~~ 258 (293)
....++.++|+++||+.+..
T Consensus 198 ~~~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 198 YITSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CCCHHHHHHHHHHHTCCEEEE
T ss_pred CCCHHHHHHHHHHCCCceEEE
Confidence 12347888999999987653
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=133.36 Aligned_cols=117 Identities=11% Similarity=0.097 Sum_probs=88.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CCCCcccE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FGDNYFDV 191 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~ 191 (293)
..++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|+++++.+++ +++++++.|...++ +.+++||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~------~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~ 92 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL------SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRA 92 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCE
Confidence 356789999999999999988866 36999999999999999999998887 67999998777643 34678999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
|+++.++.+... ........+...+++++.++|||||.++++.+.
T Consensus 93 v~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 93 AIFNLGYLPSAD---KSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EEEEEC--------------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred EEEeCCCCCCcc---hhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 999865433210 000111236678899999999999999886553
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=134.40 Aligned_cols=139 Identities=15% Similarity=0.212 Sum_probs=109.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.+|||+|||+|..+..+++.. .+++++|+|+.+++.++++ .+++.+...| .++++++||+|
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~~~~~~D~v 79 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFA------TKLYCIDINVIALKEVKEK------FDSVITLSDP---KEIPDNSVDFI 79 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTE------EEEEEECSCHHHHHHHHHH------CTTSEEESSG---GGSCTTCEEEE
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhc------CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCCCCCceEEE
Confidence 3566799999999999998888763 3999999999999999888 2458999999 45667899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--------------CchHHHHHHHHcCCcceEE
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--------------HVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--------------~~~~~~~~l~~~gf~~~~~ 258 (293)
+++.++++++ ++..+++++.++|+|||.+++.+.. ...++.++++ ||+.++.
T Consensus 80 ~~~~~l~~~~------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~ 145 (170)
T 3i9f_A 80 LFANSFHDMD------------DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKR 145 (170)
T ss_dssp EEESCSTTCS------------CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEE
T ss_pred EEccchhccc------------CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEc
Confidence 9999999988 7889999999999999999986532 2346777776 9998877
Q ss_pred eeeeccceecceeeeeecCCCCCCCC
Q 022698 259 SERVTAFMVSSHIVSFRKPSQHYAGP 284 (293)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (293)
...- .+. ..+.++++.....++
T Consensus 146 ~~~~-~~~---~~l~~~~~~~~~~~~ 167 (170)
T 3i9f_A 146 FNPT-PYH---FGLVLKRKTSEGHHH 167 (170)
T ss_dssp ECSS-TTE---EEEEEEECCCCSCCC
T ss_pred cCCC-Cce---EEEEEecCCCCcccc
Confidence 6533 222 466677665554443
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-17 Score=142.81 Aligned_cols=110 Identities=23% Similarity=0.237 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-CCCcccEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-GDNYFDVV 192 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I 192 (293)
.++.+|||+|||+|..+..+++. + ..+++|+|+|+.+++.+++++...+...++.+.++|+.+.++ ++++||+|
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v 137 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-G----IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI 137 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-T----CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-C----CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEE
Confidence 46789999999999999887765 2 349999999999999999999888776679999999998776 57889999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+++.++++.- ....++..+++++.++|+|||.+++.
T Consensus 138 ~~~~~l~~~~--------~~~~~~~~~l~~~~~~LkpgG~l~~~ 173 (298)
T 1ri5_A 138 SSQFSFHYAF--------STSESLDIAQRNIARHLRPGGYFIMT 173 (298)
T ss_dssp EEESCGGGGG--------SSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EECchhhhhc--------CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9998887620 01237889999999999999999874
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-17 Score=145.07 Aligned_cols=149 Identities=25% Similarity=0.280 Sum_probs=118.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..+..+|||+|||+|.++..+++..+ +.+++++|+ +.+++.+++++...++.+++++..+|+.+ +++. .||+|
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v 252 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAP----HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVV 252 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCC----CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEE
Confidence 45678999999999999999998875 469999999 99999999999988877789999999976 3433 49999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC--C--------------------------CchHH
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL--L--------------------------HVPEY 244 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~--------------------------~~~~~ 244 (293)
+++.++++++ ..+...+++++.++|+|||++++.+. . ...++
T Consensus 253 ~~~~vl~~~~----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (374)
T 1qzz_A 253 LLSFVLLNWS----------DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEV 322 (374)
T ss_dssp EEESCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHH
T ss_pred EEeccccCCC----------HHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHH
Confidence 9999999887 22345899999999999999998765 2 33467
Q ss_pred HHHHHHcCCcceEEeeeeccc-eecceeeeeecCC
Q 022698 245 VRRLQELKMEDIRVSERVTAF-MVSSHIVSFRKPS 278 (293)
Q Consensus 245 ~~~l~~~gf~~~~~~~~~~~~-~~~~~~~~~~~~~ 278 (293)
.++++++||+.+++...-... .....++.++++.
T Consensus 323 ~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 323 VDLAGSAGLALASERTSGSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp HHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEECC
T ss_pred HHHHHHCCCceEEEEECCCCcccCCcEEEEEEECc
Confidence 888999999988877542221 0111467777654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=143.25 Aligned_cols=152 Identities=23% Similarity=0.259 Sum_probs=120.5
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
..+++... ..+..+|||+|||+|..+..+++..| +.+++++|+ +.+++.+++++...++.+++++...|+.+ +
T Consensus 192 ~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~ 264 (369)
T 3gwz_A 192 GQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFP----GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-T 264 (369)
T ss_dssp HHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-C
T ss_pred HHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCC----CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-C
Confidence 34455443 45678999999999999999998876 469999999 99999999999988887889999999984 5
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC------------------------
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------ 239 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------ 239 (293)
.+. +||+|++..++++++ +++...+++++++.|+|||++++.+..
T Consensus 265 ~p~-~~D~v~~~~vlh~~~----------d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~ 333 (369)
T 3gwz_A 265 IPD-GADVYLIKHVLHDWD----------DDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAE 333 (369)
T ss_dssp CCS-SCSEEEEESCGGGSC----------HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCC
T ss_pred CCC-CceEEEhhhhhccCC----------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCcc
Confidence 544 799999999999988 223458999999999999999986532
Q ss_pred -CchHHHHHHHHcCCcceEEeeeeccceecceeeeeec
Q 022698 240 -HVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 240 -~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
..+++.++++++||+.+++.....+.. .++.+++
T Consensus 334 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~---svie~~~ 368 (369)
T 3gwz_A 334 RSESEFAALLEKSGLRVERSLPCGAGPV---RIVEIRR 368 (369)
T ss_dssp BCHHHHHHHHHTTTEEEEEEEECSSSSE---EEEEEEE
T ss_pred CCHHHHHHHHHHCCCeEEEEEECCCCCc---EEEEEEe
Confidence 235688999999999998876333322 3555543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=140.68 Aligned_cols=129 Identities=13% Similarity=0.105 Sum_probs=99.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh----------c------CCCCceEEEEc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM----------E------GVQEYVTAREG 177 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~----------~------~~~~~v~~~~~ 177 (293)
.++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|+++... . ....++++.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 140 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR------GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCC 140 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEEC
Confidence 45679999999999999988875 46999999999999999876531 0 01246999999
Q ss_pred CCCCCCCCC-CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc--C-----------CCchH
Q 022698 178 DVRSLPFGD-NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD--L-----------LHVPE 243 (293)
Q Consensus 178 d~~~~~~~~-~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~-----------~~~~~ 243 (293)
|+.+++..+ ++||+|+++.++++++. .+...+++++.++|||||+++++. . ...++
T Consensus 141 D~~~l~~~~~~~FD~V~~~~~l~~l~~----------~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~e 210 (252)
T 2gb4_A 141 SIFDLPRANIGKFDRIWDRGALVAINP----------GDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAE 210 (252)
T ss_dssp CTTTGGGGCCCCEEEEEESSSTTTSCG----------GGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHH
T ss_pred ccccCCcccCCCEEEEEEhhhhhhCCH----------HHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHH
Confidence 999987653 79999999999988862 256789999999999999986532 1 23356
Q ss_pred HHHHHHHcCCcceEEe
Q 022698 244 YVRRLQELKMEDIRVS 259 (293)
Q Consensus 244 ~~~~l~~~gf~~~~~~ 259 (293)
+.+++.. +|+.+...
T Consensus 211 l~~~l~~-~f~v~~~~ 225 (252)
T 2gb4_A 211 LKRLFGT-KCSMQCLE 225 (252)
T ss_dssp HHHHHTT-TEEEEEEE
T ss_pred HHHHhhC-CeEEEEEe
Confidence 7777765 58765554
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-18 Score=146.62 Aligned_cols=130 Identities=24% Similarity=0.264 Sum_probs=105.9
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+++.+. ..++.+|||+|||+|..+..+++ + +.+|+|+|+|+.+++.++++. +++.+..+|+.++++
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~----~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~ 114 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--S----GAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRV 114 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--T----TCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCC
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--C----CCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCc
Confidence 4444443 35678999999999999998887 2 469999999999999998775 347899999998876
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------------------
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------- 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------- 239 (293)
+++||+|+++.++++++ ++..+++++.++|||||++++....
T Consensus 115 -~~~fD~v~~~~~l~~~~------------d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (279)
T 3ccf_A 115 -DKPLDAVFSNAMLHWVK------------EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQA 181 (279)
T ss_dssp -SSCEEEEEEESCGGGCS------------CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGG
T ss_pred -CCCcCEEEEcchhhhCc------------CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccC
Confidence 57899999999999988 8889999999999999999884321
Q ss_pred -------CchHHHHHHHHcCCcceEEee
Q 022698 240 -------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 -------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
...++.++++++||+.+++..
T Consensus 182 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 209 (279)
T 3ccf_A 182 LNPWYFPSIGEYVNILEKQGFDVTYAAL 209 (279)
T ss_dssp GCCCCCCCHHHHHHHHHHHTEEEEEEEE
T ss_pred cCceeCCCHHHHHHHHHHcCCEEEEEEE
Confidence 133567888899998876653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-18 Score=142.87 Aligned_cols=140 Identities=17% Similarity=0.174 Sum_probs=103.2
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
.+.+.+...+. .++.+|||+|||+|..+..+++.. ..+++++|+|+.|++.|++++...+ .++.++++|+.
T Consensus 48 ~~~~~l~~~~~--~~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~ 118 (236)
T 1zx0_A 48 PYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAP-----IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWE 118 (236)
T ss_dssp HHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHTSC-----EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHH
T ss_pred HHHHHHHhhcC--CCCCeEEEEeccCCHHHHHHHhcC-----CCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHH
Confidence 34444444442 456799999999999998885432 2489999999999999999988766 56999999998
Q ss_pred CC--CCCCCcccEEEe-cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc----------------
Q 022698 181 SL--PFGDNYFDVVVS-AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV---------------- 241 (293)
Q Consensus 181 ~~--~~~~~~fD~Iv~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------- 241 (293)
++ ++++++||+|++ ...+ ..+ .. ...+...++++++++|||||++++++....
T Consensus 119 ~~~~~~~~~~fD~V~~d~~~~-~~~-~~------~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 190 (236)
T 1zx0_A 119 DVAPTLPDGHFDGILYDTYPL-SEE-TW------HTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFE 190 (236)
T ss_dssp HHGGGSCTTCEEEEEECCCCC-BGG-GT------TTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHH
T ss_pred HhhcccCCCceEEEEECCccc-chh-hh------hhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhcc
Confidence 87 677889999999 3332 111 00 012566789999999999999998653211
Q ss_pred hHHHHHHHHcCCcceE
Q 022698 242 PEYVRRLQELKMEDIR 257 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~ 257 (293)
+.....+.++||....
T Consensus 191 ~~~~~~l~~aGF~~~~ 206 (236)
T 1zx0_A 191 ETQVPALLEAGFRREN 206 (236)
T ss_dssp HHTHHHHHHTTCCGGG
T ss_pred HHHHHHHHHCCCCCCc
Confidence 3456678899998533
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.7e-17 Score=129.40 Aligned_cols=138 Identities=14% Similarity=0.046 Sum_probs=107.6
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
.++...+++.+. ..++.+|||+|||+|.++..+++..+ +.+++++|+|+.+++.+++++...+..+++ ++..|.
T Consensus 11 ~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~ 84 (178)
T 3hm2_A 11 QHVRALAISALA-PKPHETLWDIGGGSGSIAIEWLRSTP----QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGA 84 (178)
T ss_dssp HHHHHHHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSS----SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCT
T ss_pred HHHHHHHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCC----CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecch
Confidence 445556666654 46677999999999999999887764 579999999999999999999988876578 888887
Q ss_pred CC-CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcce
Q 022698 180 RS-LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDI 256 (293)
Q Consensus 180 ~~-~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~ 256 (293)
.+ ++...++||+|+++.++++ ..+++++.++|+|||.+++.... ......+.+++.|++..
T Consensus 85 ~~~~~~~~~~~D~i~~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 85 PRAFDDVPDNPDVIFIGGGLTA----------------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS 148 (178)
T ss_dssp TGGGGGCCSCCSEEEECC-TTC----------------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred HhhhhccCCCCCEEEECCcccH----------------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence 55 2222278999999988765 26788999999999999986654 34467788888888766
Q ss_pred EEe
Q 022698 257 RVS 259 (293)
Q Consensus 257 ~~~ 259 (293)
++.
T Consensus 149 ~~~ 151 (178)
T 3hm2_A 149 SFA 151 (178)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-17 Score=136.54 Aligned_cols=140 Identities=15% Similarity=0.100 Sum_probs=105.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~I 192 (293)
++.+|||||||+|.++..+++..+ +.+++|+|+|+.+++.|++++...++ .++.++++|+.+++ +++++||.|
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p----~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v 112 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNP----DINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRV 112 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCT----TSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCC----CCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEE
Confidence 456899999999999999998865 46999999999999999999998886 46999999998764 557789999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHcCCcceEEeeeec
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELKMEDIRVSERVT 263 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~gf~~~~~~~~~~ 263 (293)
+++.+..+.... +... .-....+++++.++|+|||.+++..... .....+.+.+.||.......++.
T Consensus 113 ~~~~~~p~~~~~-~~~~---rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~~~~d~~ 181 (213)
T 2fca_A 113 YLNFSDPWPKKR-HEKR---RLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVSLDLH 181 (213)
T ss_dssp EEESCCCCCSGG-GGGG---STTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGG
T ss_pred EEECCCCCcCcc-cccc---ccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccccccccc
Confidence 987543221100 0000 0013578999999999999999864322 34567778889998777766654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=134.85 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=104.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++. + ..+++++|+|+.+++.+++++..++..+ +++.+.|+.+.+ .++||+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~-~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--~~~fD~i~ 130 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKL-G----AKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV--DGKFDLIV 130 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC--CSCEEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHC-C----CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC--CCCceEEE
Confidence 45679999999999999987753 2 3599999999999999999999888755 999999998743 57899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCchHHHHHHHHcCCcceEEeee
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
++.++++ ...+++++.++|+|||.+++.+ ....+++.+.+++.||+.++....
T Consensus 131 ~~~~~~~---------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 185 (205)
T 3grz_A 131 ANILAEI---------------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRA 185 (205)
T ss_dssp EESCHHH---------------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEE
T ss_pred ECCcHHH---------------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeecc
Confidence 9987754 3578999999999999999854 344677899999999998887654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.7e-17 Score=135.88 Aligned_cols=113 Identities=20% Similarity=0.253 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
...+.+...+. ++.+|||+|||+|..+..+++. .+++++|+|+.+++.++++....+ .++.+.+.|+.
T Consensus 22 ~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~-------~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~ 89 (243)
T 3d2l_A 22 EWVAWVLEQVE---PGKRIADIGCGTGTATLLLADH-------YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMR 89 (243)
T ss_dssp HHHHHHHHHSC---TTCEEEEESCTTCHHHHHHTTT-------SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGG
T ss_pred HHHHHHHHHcC---CCCeEEEecCCCCHHHHHHhhC-------CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChh
Confidence 45555555543 4579999999999999877754 389999999999999999988765 35899999998
Q ss_pred CCCCCCCcccEEEecc-hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 181 SLPFGDNYFDVVVSAA-FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+++.+ ++||+|+++. +++++. ...+...+++++.++|+|||.+++
T Consensus 90 ~~~~~-~~fD~v~~~~~~~~~~~---------~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 90 ELELP-EPVDAITILCDSLNYLQ---------TEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp GCCCS-SCEEEEEECTTGGGGCC---------SHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hcCCC-CCcCEEEEeCCchhhcC---------CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 87654 7899999986 888773 123778899999999999999886
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=140.16 Aligned_cols=137 Identities=19% Similarity=0.265 Sum_probs=105.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC---CCC-CCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL---PFG-DNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~-~~~fD 190 (293)
++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++ .++.+...|+.++ +.. .++||
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADR------GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHC------CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCcc
Confidence 4579999999999999888765 35999999999999999877 2366788887665 333 45699
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC--------------------------------
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-------------------------------- 238 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------------------- 238 (293)
+|+++.+++ .. ++..+++++.++|+|||.+++.+.
T Consensus 119 ~v~~~~~l~-~~------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (227)
T 3e8s_A 119 LICANFALL-HQ------------DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWY 185 (227)
T ss_dssp EEEEESCCC-SS------------CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEE
T ss_pred EEEECchhh-hh------------hHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEE
Confidence 999999988 55 678999999999999999998542
Q ss_pred -CCchHHHHHHHHcCCcceEEeeeeccce--ecceeeeeecC
Q 022698 239 -LHVPEYVRRLQELKMEDIRVSERVTAFM--VSSHIVSFRKP 277 (293)
Q Consensus 239 -~~~~~~~~~l~~~gf~~~~~~~~~~~~~--~~~~~~~~~~~ 277 (293)
...+++.++++++||+.+++........ ....++.++||
T Consensus 186 ~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 186 FRTLASWLNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp ECCHHHHHHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred EecHHHHHHHHHHcCCeEEEEecCCCCCCCCceeEEEEeecC
Confidence 1347899999999999998876322211 22345555553
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=141.98 Aligned_cols=131 Identities=18% Similarity=0.150 Sum_probs=111.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.+..+|||+|||+|..+..+++.+| +.+++++|+ +.+++.+++++...++.+++++...|+.+ +.+. +||+|+
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~-~~D~v~ 240 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHE----DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPA-GAGGYV 240 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCC-SCSEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCC----CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCC-CCcEEE
Confidence 4467999999999999999998876 469999999 99999999999988887889999999974 4444 799999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-----------------------CchHHHHHHHH
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-----------------------HVPEYVRRLQE 250 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----------------------~~~~~~~~l~~ 250 (293)
+..++|+++ +++...+++++++.|+|||++++.+.. ..+++.+++++
T Consensus 241 ~~~vlh~~~----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~ 310 (332)
T 3i53_A 241 LSAVLHDWD----------DLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQ 310 (332)
T ss_dssp EESCGGGSC----------HHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHH
T ss_pred EehhhccCC----------HHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHH
Confidence 999999988 224588999999999999999986542 23578899999
Q ss_pred cCCcceEEeee
Q 022698 251 LKMEDIRVSER 261 (293)
Q Consensus 251 ~gf~~~~~~~~ 261 (293)
+||+.++++..
T Consensus 311 aGf~~~~~~~~ 321 (332)
T 3i53_A 311 AGLAVRAAHPI 321 (332)
T ss_dssp TTEEEEEEEEC
T ss_pred CCCEEEEEEEC
Confidence 99999888743
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=135.51 Aligned_cols=122 Identities=19% Similarity=0.179 Sum_probs=96.7
Q ss_pred hHHHHHHHHHhcCC--CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 99 HYDMAQRMVGSVND--WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 99 ~~~~~~~l~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
.+.+.+.+++.+.. ..++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.+++|++.++. +++++++
T Consensus 26 ~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-~----~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~ 99 (189)
T 3p9n_A 26 TDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-G----AASVLFVESDQRSAAVIARNIEALGL-SGATLRR 99 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-T----CSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEE
T ss_pred cHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-C----CCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEE
Confidence 34444555444422 135679999999999999877764 1 35899999999999999999999887 6799999
Q ss_pred cCCCCCC--CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHH--cccCCcEEEEEc
Q 022698 177 GDVRSLP--FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVR--VLKPGGVGVVWD 237 (293)
Q Consensus 177 ~d~~~~~--~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~ 237 (293)
+|+.+.+ +++++||+|++++++++.. .+...+++.+.+ +|+|||.+++..
T Consensus 100 ~d~~~~~~~~~~~~fD~i~~~~p~~~~~-----------~~~~~~l~~~~~~~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 100 GAVAAVVAAGTTSPVDLVLADPPYNVDS-----------ADVDAILAALGTNGWTREGTVAVVER 153 (189)
T ss_dssp SCHHHHHHHCCSSCCSEEEECCCTTSCH-----------HHHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred ccHHHHHhhccCCCccEEEECCCCCcch-----------hhHHHHHHHHHhcCccCCCeEEEEEe
Confidence 9998753 3367899999999988741 277889999998 999999999854
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.4e-17 Score=137.36 Aligned_cols=143 Identities=15% Similarity=0.094 Sum_probs=109.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC---CCccc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG---DNYFD 190 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD 190 (293)
.++.+|||+|||+|..+..++...+ +.+|+++|+|+.+++.++++++.+++. +++++++|+.+++.. .++||
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD 143 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFP----HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYD 143 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCT----TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCcc
Confidence 3567999999999999999987544 469999999999999999999988874 499999999876543 57899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-ch---HHHHHHHHcCCcceEEeeeecc-c
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH-VP---EYVRRLQELKMEDIRVSERVTA-F 265 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~---~~~~~l~~~gf~~~~~~~~~~~-~ 265 (293)
+|++..+ . ++..+++.+.++|+|||.+++..... .+ +..+.+++.||..++...-... .
T Consensus 144 ~V~~~~~----~------------~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 207 (240)
T 1xdz_A 144 IVTARAV----A------------RLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIE 207 (240)
T ss_dssp EEEEECC----S------------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTT
T ss_pred EEEEecc----C------------CHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCC
Confidence 9999762 3 56789999999999999998865332 22 3556778899988776543222 1
Q ss_pred eecceeeeeecC
Q 022698 266 MVSSHIVSFRKP 277 (293)
Q Consensus 266 ~~~~~~~~~~~~ 277 (293)
.....++.++|.
T Consensus 208 ~~~~~l~~~~k~ 219 (240)
T 1xdz_A 208 ESDRNIMVIRKI 219 (240)
T ss_dssp CCEEEEEEEEEC
T ss_pred CCceEEEEEEec
Confidence 223355665553
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=129.55 Aligned_cols=126 Identities=20% Similarity=0.198 Sum_probs=104.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++.. ++.+.+.|+.+.++++++||+|+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~~~D~i~ 112 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ------GHDVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQISETDFDLIV 112 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSCCCCCCEEEEE
T ss_pred cCCCeEEEECCCCCHHHHHHHHC------CCcEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCCCCCCceeEEE
Confidence 46779999999999999988875 3599999999999999988752 37899999998777678999999
Q ss_pred ec-chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC----CCchHHHHHHHHcCCcceEEeee
Q 022698 194 SA-AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL----LHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
++ +.+++.+ .++...+++++.++|+|||.+++... ...+++.+.+.+.||+.++....
T Consensus 113 ~~~~~~~~~~----------~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 113 SAGNVMGFLA----------EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp ECCCCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred ECCcHHhhcC----------hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecc
Confidence 98 6677764 23678999999999999999988543 24568899999999998877654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=142.17 Aligned_cols=142 Identities=19% Similarity=0.191 Sum_probs=117.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CCCCcccEEEe
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FGDNYFDVVVS 194 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Iv~ 194 (293)
..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++....+..+++++..+|+.+.+ +..++||+|++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~ 254 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHP----QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVML 254 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCT----TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCC----CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEE
Confidence 67999999999999999998876 469999999 8899999999998888788999999998864 13456999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------------------CchHHHH
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----------------------------HVPEYVR 246 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------------------~~~~~~~ 246 (293)
+.++|+++ +++...+++++++.|+|||++++++.. ...++.+
T Consensus 255 ~~vlh~~~----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 324 (352)
T 3mcz_A 255 NDCLHYFD----------AREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAG 324 (352)
T ss_dssp ESCGGGSC----------HHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHH
T ss_pred ecccccCC----------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHH
Confidence 99999887 335589999999999999999986521 1346889
Q ss_pred HHHHcCCcceEEeeeeccceecceeeeeecCC
Q 022698 247 RLQELKMEDIRVSERVTAFMVSSHIVSFRKPS 278 (293)
Q Consensus 247 ~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (293)
+++++||+.++.. .+. ..++.++||.
T Consensus 325 ll~~aGf~~~~~~---~g~---~~l~~a~kp~ 350 (352)
T 3mcz_A 325 VVRDAGLAVGERS---IGR---YTLLIGQRSS 350 (352)
T ss_dssp HHHHTTCEEEEEE---ETT---EEEEEEECCC
T ss_pred HHHHCCCceeeec---cCc---eEEEEEecCC
Confidence 9999999988732 222 2578888874
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=142.66 Aligned_cols=167 Identities=15% Similarity=0.051 Sum_probs=121.6
Q ss_pred ccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHh-hhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 96 VPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQF-KKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
.+..+.++..++.... +.++.+|||+|||+|.+++.++... + ..+++|+|+|+.+++.|++|++.+++. ++++
T Consensus 185 a~l~~~la~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~----~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~ 258 (354)
T 3tma_A 185 GSLTPVLAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGP----TSPVYAGDLDEKRLGLAREAALASGLS-WIRF 258 (354)
T ss_dssp CSCCHHHHHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCT----TSCEEEEESCHHHHHHHHHHHHHTTCT-TCEE
T ss_pred CCcCHHHHHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCC----CceEEEEECCHHHHHHHHHHHHHcCCC-ceEE
Confidence 4566777777777664 5677899999999999999999876 3 369999999999999999999999886 7999
Q ss_pred EEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCc
Q 022698 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKME 254 (293)
Q Consensus 175 ~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~ 254 (293)
.+.|+.+++.+.++||+|++|+||.....+ ..........+++++.++|+|||.++++.... ....+.++ .||+
T Consensus 259 ~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~----~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~-~~~~~~~~-~g~~ 332 (354)
T 3tma_A 259 LRADARHLPRFFPEVDRILANPPHGLRLGR----KEGLFHLYWDFLRGALALLPPGGRVALLTLRP-ALLKRALP-PGFA 332 (354)
T ss_dssp EECCGGGGGGTCCCCSEEEECCCSCC--------CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH-HHHHHHCC-TTEE
T ss_pred EeCChhhCccccCCCCEEEECCCCcCccCC----cccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH-HHHHHHhh-cCcE
Confidence 999999987666779999999998643210 01111234678999999999999999976421 22333334 7887
Q ss_pred ceEEeeeeccceecceeeeee
Q 022698 255 DIRVSERVTAFMVSSHIVSFR 275 (293)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~ 275 (293)
..+.+.-..+.. .++++..+
T Consensus 333 ~~~~~~l~~g~l-~~~i~vl~ 352 (354)
T 3tma_A 333 LRHARVVEQGGV-YPRVFVLE 352 (354)
T ss_dssp EEEEEECCBTTB-CCEEEEEE
T ss_pred EEEEEEEEeCCE-EEEEEEEE
Confidence 766554433322 33444443
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=144.17 Aligned_cols=154 Identities=20% Similarity=0.271 Sum_probs=112.2
Q ss_pred HHHHHHHHhcC-CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 101 DMAQRMVGSVN-DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 101 ~~~~~l~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
.+.+.+...+. ...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++|+..++.. ++++.+|+
T Consensus 218 ~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~------g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~ 289 (381)
T 3dmg_A 218 LLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM------GAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDV 289 (381)
T ss_dssp HHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT------TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEECST
T ss_pred HHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcch
Confidence 34444544432 1235679999999999999999876 359999999999999999999998864 89999999
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEe
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
.+.+.++++||+|++|+++++.... ...+...+++++.++|+|||.++++..... .+...+.+. |..++..
T Consensus 290 ~~~~~~~~~fD~Ii~npp~~~~~~~-------~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l-~~~~~l~~~-f~~v~~l 360 (381)
T 3dmg_A 290 DEALTEEARFDIIVTNPPFHVGGAV-------ILDVAQAFVNVAAARLRPGGVFFLVSNPFL-KYEPLLEEK-FGAFQTL 360 (381)
T ss_dssp TTTSCTTCCEEEEEECCCCCTTCSS-------CCHHHHHHHHHHHHHEEEEEEEEEEECTTS-CHHHHHHHH-HSCCEEE
T ss_pred hhccccCCCeEEEEECCchhhcccc-------cHHHHHHHHHHHHHhcCcCcEEEEEEcCCC-ChHHHHHHh-hccEEEE
Confidence 9876556799999999999872200 012778999999999999999999754443 333444333 4455555
Q ss_pred eeeccceecceeeeeec
Q 022698 260 ERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 260 ~~~~~~~~~~~~~~~~~ 276 (293)
.-.+|. ++.+.+
T Consensus 361 -~~~gF~----Vl~a~~ 372 (381)
T 3dmg_A 361 -KVAEYK----VLFAEK 372 (381)
T ss_dssp -EESSSE----EEEEEC
T ss_pred -eCCCEE----EEEEEE
Confidence 445543 555554
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=144.32 Aligned_cols=160 Identities=14% Similarity=0.039 Sum_probs=107.8
Q ss_pred hhHhhhcccccccCccc-hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeC-CHHHHHHH
Q 022698 82 VCLFFAAGNFFYSAVPL-HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDC-KKRTTLST 159 (293)
Q Consensus 82 ~~~~~~~~~f~~~~~~~-~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDi-s~~~l~~a 159 (293)
+.++.+...||...+.. ...+.+.+..... ..++.+|||+|||+|.++..+++. . ..+|+++|+ |+.+++.+
T Consensus 46 ~~~i~g~~~~~g~~~~~~~~~l~~~l~~~~~-~~~~~~vLDlG~G~G~~~~~~a~~-~----~~~v~~~D~s~~~~~~~a 119 (281)
T 3bzb_A 46 QVQTTQEHPLWTSHVWSGARALADTLCWQPE-LIAGKTVCELGAGAGLVSIVAFLA-G----ADQVVATDYPDPEILNSL 119 (281)
T ss_dssp EEECC-----------CHHHHHHHHHHHCGG-GTTTCEEEETTCTTSHHHHHHHHT-T----CSEEEEEECSCHHHHHHH
T ss_pred EEEECCCCCCCCceeecHHHHHHHHHHhcch-hcCCCeEEEecccccHHHHHHHHc-C----CCEEEEEeCCCHHHHHHH
Confidence 56677777777655433 3445555555432 345679999999999999888764 1 248999999 89999999
Q ss_pred HHHH-----HhcCCC----CceEEEEcCCCCCC--C----CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHH
Q 022698 160 LRTA-----KMEGVQ----EYVTAREGDVRSLP--F----GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV 224 (293)
Q Consensus 160 ~~~~-----~~~~~~----~~v~~~~~d~~~~~--~----~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (293)
++|+ +.+++. +++.+...|+.+.. + ..++||+|++..++++.+ +...+++.+.
T Consensus 120 ~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~------------~~~~ll~~l~ 187 (281)
T 3bzb_A 120 ESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ------------AHDALLRSVK 187 (281)
T ss_dssp HHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG------------GHHHHHHHHH
T ss_pred HHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChH------------HHHHHHHHHH
Confidence 9999 444443 36888877765531 1 357899999988887776 7789999999
Q ss_pred Hccc---C--CcEEEEEcCC-------CchHHHHHHHHcC-CcceEEe
Q 022698 225 RVLK---P--GGVGVVWDLL-------HVPEYVRRLQELK-MEDIRVS 259 (293)
Q Consensus 225 ~~Lk---p--gG~l~~~~~~-------~~~~~~~~l~~~g-f~~~~~~ 259 (293)
++|+ | ||.++++... ...++.+.+++.| |+..++.
T Consensus 188 ~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 188 MLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp HHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEEE
T ss_pred HHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEec
Confidence 9999 9 9987764322 1456778889999 9877764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=138.54 Aligned_cols=106 Identities=19% Similarity=0.155 Sum_probs=90.5
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCccc
Q 022698 111 NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFD 190 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 190 (293)
..+.++.+|||||||+|.++..++.+.+ +++|+++|+|+.+++.|+++++..++ ++++|+++|+.+++ +++||
T Consensus 118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~----ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~FD 190 (298)
T 3fpf_A 118 GRFRRGERAVFIGGGPLPLTGILLSHVY----GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLEFD 190 (298)
T ss_dssp TTCCTTCEEEEECCCSSCHHHHHHHHTT----CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCCCS
T ss_pred cCCCCcCEEEEECCCccHHHHHHHHHcc----CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCCcC
Confidence 4567889999999999988766655544 57999999999999999999999888 78999999998865 67899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+|++... .+ +...+++++.++|||||++++.+.
T Consensus 191 vV~~~a~---~~------------d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 191 VLMVAAL---AE------------PKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEEECTT---CS------------CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEEECCC---cc------------CHHHHHHHHHHHcCCCcEEEEEcC
Confidence 9998654 34 678999999999999999998653
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-16 Score=132.96 Aligned_cols=146 Identities=10% Similarity=0.101 Sum_probs=102.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC---CCC---CCc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL---PFG---DNY 188 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~---~~~ 188 (293)
++.+|||+|||+|.++..+++..+ +.+++++|+|+.|++.|++++..+++.++++++++|+.+. +++ +++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 140 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN----GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEII 140 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCc
Confidence 467999999999999999988765 4699999999999999999999998877799999997652 333 258
Q ss_pred ccEEEecchhhhhccc-cC------------cchhh----------hHHHHHHHHHHHHHcccCCcEEEE-EcCCCc-hH
Q 022698 189 FDVVVSAAFFHTVGKE-YG------------HRTVE----------AAAERMRVLGEMVRVLKPGGVGVV-WDLLHV-PE 243 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~-~~------------~~~~~----------~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~-~~ 243 (293)
||+|++|+||+....+ .. ...+. ...-...++....+.++++|++.. .+.... .+
T Consensus 141 fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 220 (254)
T 2h00_A 141 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAP 220 (254)
T ss_dssp BSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHH
T ss_pred ccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHH
Confidence 9999999998765411 00 00000 000111233444566777776654 333344 67
Q ss_pred HHHHHHHcCCcceEEeeeecc
Q 022698 244 YVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 244 ~~~~l~~~gf~~~~~~~~~~~ 264 (293)
+.++++++||..+++.....+
T Consensus 221 ~~~~l~~~Gf~~v~~~~~~~g 241 (254)
T 2h00_A 221 LKEELRIQGVPKVTYTEFCQG 241 (254)
T ss_dssp HHHHHHHTTCSEEEEEEEEET
T ss_pred HHHHHHHcCCCceEEEEEecC
Confidence 889999999999988776665
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-17 Score=138.36 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=102.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++|+..++.. +++..+|+.+. ++.++||+|+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~------g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~~~~~fD~Vv 189 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKL------GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-LPFGPFDLLV 189 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-GGGCCEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHh------CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-CcCCCCCEEE
Confidence 46789999999999999887764 239999999999999999999988875 88999998762 3457899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC--CCchHHHHHHHHcCCcceEEeee
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL--LHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
+|.+.+ ....+++++.++|+|||++++.+. ...+++.+.+++.||+.++...+
T Consensus 190 ~n~~~~---------------~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~ 244 (254)
T 2nxc_A 190 ANLYAE---------------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE 244 (254)
T ss_dssp EECCHH---------------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE
T ss_pred ECCcHH---------------HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEecc
Confidence 987654 345789999999999999998653 34677889999999998877654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.6e-17 Score=140.67 Aligned_cols=124 Identities=18% Similarity=0.274 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC---CceEEEE
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ---EYVTARE 176 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~---~~v~~~~ 176 (293)
..+.+.+...+. ..++.+|||+|||+|..+..++.. +.+|+|+|+|+.+++.++++....+.. .++.+..
T Consensus 43 ~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 115 (293)
T 3thr_A 43 AEYKAWLLGLLR-QHGCHRVLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE 115 (293)
T ss_dssp HHHHHHHHHHHH-HTTCCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEE
T ss_pred HHHHHHHHHHhc-ccCCCEEEEecCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEee
Confidence 334444554443 245679999999999999988876 359999999999999999886443321 3578899
Q ss_pred cCCCCCC---CCCCcccEEEec-chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 177 GDVRSLP---FGDNYFDVVVSA-AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 177 ~d~~~~~---~~~~~fD~Iv~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+|+.+++ +++++||+|+|+ .++++++...+. .+++..+++++.++|||||++++
T Consensus 116 ~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~ 173 (293)
T 3thr_A 116 ANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGD-----QSEHRLALKNIASMVRPGGLLVI 173 (293)
T ss_dssp CCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSS-----SHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cChhhCccccccCCCeEEEEEcChHHhhcCccccC-----HHHHHHHHHHHHHHcCCCeEEEE
Confidence 9998876 667899999998 899998720000 12488999999999999999986
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=141.11 Aligned_cols=149 Identities=18% Similarity=0.244 Sum_probs=117.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..+..+|||+|||+|.++..+++..+ ..+++++|+ +.+++.+++++...++.+++++..+|+.+ +++. .||+|
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v 253 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAP----HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAI 253 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEE
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCC----CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEE
Confidence 45678999999999999999998865 469999999 99999999999988877789999999976 3433 49999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---------------------------CchHHH
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------------------HVPEYV 245 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------------~~~~~~ 245 (293)
+++.++++++ ..+...+++++.++|+|||++++.+.. ..+++.
T Consensus 254 ~~~~vl~~~~----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 323 (360)
T 1tw3_A 254 ILSFVLLNWP----------DHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWD 323 (360)
T ss_dssp EEESCGGGSC----------HHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHH
T ss_pred EEcccccCCC----------HHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHH
Confidence 9999999887 224468999999999999999987654 124678
Q ss_pred HHHHHcCCcceEEeeeecc-ceecceeeeeecCC
Q 022698 246 RRLQELKMEDIRVSERVTA-FMVSSHIVSFRKPS 278 (293)
Q Consensus 246 ~~l~~~gf~~~~~~~~~~~-~~~~~~~~~~~~~~ 278 (293)
++++++||+.+++...-.. .+....++.++++.
T Consensus 324 ~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~~ 357 (360)
T 1tw3_A 324 GLAASAGLVVEEVRQLPSPTIPYDLSLLVLAPAA 357 (360)
T ss_dssp HHHHHTTEEEEEEEEEECSSSSCEEEEEEEEEC-
T ss_pred HHHHHCCCeEEEEEeCCCCcccCccEEEEEEeCC
Confidence 8899999998887654321 01112577777753
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-16 Score=131.68 Aligned_cols=123 Identities=15% Similarity=0.220 Sum_probs=99.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-CCC-C----CC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-LPF-G----DN 187 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~----~~ 187 (293)
.++.+|||+|||+|..+..+++.++. +.+|+++|+|+.+++.|+++++.+++.++++++++|+.+ ++. . .+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 133 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQP---GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVD 133 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCT---TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCC---CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCC
Confidence 35679999999999999999886542 469999999999999999999999987789999999855 221 1 16
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcC
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELK 252 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~g 252 (293)
+||+|+++...++.. +...+++.+ ++|+|||++++.+.. ..+++.+.+++..
T Consensus 134 ~fD~V~~d~~~~~~~------------~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~ 187 (221)
T 3u81_A 134 TLDMVFLDHWKDRYL------------PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSS 187 (221)
T ss_dssp CCSEEEECSCGGGHH------------HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCT
T ss_pred ceEEEEEcCCcccch------------HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCC
Confidence 899999988776655 566778877 999999999986544 3467888887665
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-17 Score=133.85 Aligned_cols=120 Identities=19% Similarity=0.243 Sum_probs=94.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CCCCcccE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FGDNYFDV 191 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~ 191 (293)
..++.+|||+|||+|.++..+++.+.. ..+++++|+|+.+++.+++++..+++.++++++++|+.+++ ..+++||+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~ 96 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGE---NGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKA 96 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCT---TCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceE
Confidence 356789999999999999999987632 35999999999999999999999887678999999988765 44578999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
|++++++..... ........+...+++++.++|+|||+++++.+
T Consensus 97 v~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 97 VMFNLGYLPSGD---HSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EEEEESBCTTSC---TTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEcCCcccCcc---cccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 999988722110 00111123566799999999999999998754
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=143.30 Aligned_cols=174 Identities=17% Similarity=0.177 Sum_probs=127.5
Q ss_pred cccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc
Q 022698 92 FYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY 171 (293)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~ 171 (293)
+....++.+.+...++... ..++.+|||+|||+|.+++.++...+ ..+++|+|+|+.+++.|++|+..+++.++
T Consensus 196 ~~~~a~l~~~la~~l~~~~--~~~~~~vLD~gCGsG~~~i~~a~~~~----~~~v~g~Dis~~~l~~A~~n~~~~gl~~~ 269 (373)
T 3tm4_A 196 YDHPAHLKASIANAMIELA--ELDGGSVLDPMCGSGTILIELALRRY----SGEIIGIEKYRKHLIGAEMNALAAGVLDK 269 (373)
T ss_dssp SCCTTCCCHHHHHHHHHHH--TCCSCCEEETTCTTCHHHHHHHHTTC----CSCEEEEESCHHHHHHHHHHHHHTTCGGG
T ss_pred ccCCCCccHHHHHHHHHhh--cCCCCEEEEccCcCcHHHHHHHHhCC----CCeEEEEeCCHHHHHHHHHHHHHcCCCCc
Confidence 3344456778888887776 56778999999999999999887633 24899999999999999999999998778
Q ss_pred eEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHc
Q 022698 172 VTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQEL 251 (293)
Q Consensus 172 v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~ 251 (293)
+++.++|+.+++.++++||+|++|+||.....+.. . ...-...+++++.++| ||.++++.. ......+.+.+.
T Consensus 270 i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~--~--~~~ly~~~~~~l~r~l--~g~~~~i~~-~~~~~~~~~~~~ 342 (373)
T 3tm4_A 270 IKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKS--M--IPDLYMKFFNELAKVL--EKRGVFITT-EKKAIEEAIAEN 342 (373)
T ss_dssp CEEEECCGGGGGGTCSCEEEEEEECCCC------C--C--HHHHHHHHHHHHHHHE--EEEEEEEES-CHHHHHHHHHHT
T ss_pred eEEEECChhhCCcccCCcCEEEECCCCCcccCcch--h--HHHHHHHHHHHHHHHc--CCeEEEEEC-CHHHHHHHHHHc
Confidence 99999999998776788999999999865321100 0 0112367888889988 555555432 345677788899
Q ss_pred CCcceEEeeeeccceecceeeeeecCCC
Q 022698 252 KMEDIRVSERVTAFMVSSHIVSFRKPSQ 279 (293)
Q Consensus 252 gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (293)
||+..+......|.. .++++....+.+
T Consensus 343 G~~~~~~~~~~nG~l-~~~~~~~~~~~~ 369 (373)
T 3tm4_A 343 GFEIIHHRVIGHGGL-MVHLYVVKLEHH 369 (373)
T ss_dssp TEEEEEEEEEEETTE-EEEEEEEEETTC
T ss_pred CCEEEEEEEEEcCCE-EEEEEeccCccC
Confidence 999888776666644 556555554443
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.3e-17 Score=133.04 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++ +|||+|||+|..+..+++. +.+++++|+|+.+++.+++++...+. ++.+.+.|+.++++++++||+|+
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~ 99 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL------GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIV 99 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT------TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEE
T ss_pred CCC-CEEEECCCCCHhHHHHHhC------CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEE
Confidence 345 9999999999999888764 35999999999999999999887765 58999999998877778999999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------CCchHHHHHHHHcCCcc
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------LHVPEYVRRLQELKMED 255 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------~~~~~~~~~l~~~gf~~ 255 (293)
++.. +.+ ..++..+++++.++|+|||.+++... ....++.+++. ||+.
T Consensus 100 ~~~~--~~~----------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v 165 (202)
T 2kw5_A 100 SIFC--HLP----------SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNW 165 (202)
T ss_dssp EECC--CCC----------HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCE
T ss_pred EEhh--cCC----------HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceE
Confidence 9643 222 23788999999999999999998532 12345666666 9998
Q ss_pred eEEeee
Q 022698 256 IRVSER 261 (293)
Q Consensus 256 ~~~~~~ 261 (293)
++....
T Consensus 166 ~~~~~~ 171 (202)
T 2kw5_A 166 LIANNL 171 (202)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887643
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=132.91 Aligned_cols=128 Identities=12% Similarity=0.012 Sum_probs=107.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|+|||||+|.+++.+++..+ ..+|+|+|+++.+++.|++|++.+++.++++++.+|..+...+..+||+|+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~----~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Iv 95 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGY----CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTIT 95 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTC----EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEE
Confidence 4667999999999999999988744 458999999999999999999999998889999999988544334799987
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEe
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
....-. +-...++....+.|+++|+|++......+.+++.|.+.||..++..
T Consensus 96 iaGmGg--------------~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 96 ICGMGG--------------RLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp EEEECH--------------HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEE
T ss_pred EeCCch--------------HHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHHHCCCEEEEEE
Confidence 543322 1346788888999999999999888888899999999999977654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-16 Score=132.96 Aligned_cols=101 Identities=25% Similarity=0.383 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++..+ +++++|+|+.+++.++++. +++.+.+.|+.+++. +++||+|+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~------~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~~D~v~ 105 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG------DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL-GRKFSAVV 105 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS------EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC-SSCEEEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC------cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc-CCCCcEEE
Confidence 4567999999999999999987743 8999999999999998874 248899999998776 67899999
Q ss_pred e-cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 194 S-AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 194 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
| ..++++++. .++...+++++.++|+|||.+++.
T Consensus 106 ~~~~~~~~~~~---------~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 106 SMFSSVGYLKT---------TEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp ECTTGGGGCCS---------HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred EcCchHhhcCC---------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 6 457887741 237789999999999999999884
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.5e-17 Score=137.71 Aligned_cols=136 Identities=18% Similarity=0.118 Sum_probs=104.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC-------------------------
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV------------------------- 168 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~------------------------- 168 (293)
.++.+|||+|||+|..+..++.... .+|+++|+|+.+++.+++++...+.
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-----TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKE 129 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-----EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-----CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHH
Confidence 4567999999999999877765421 3899999999999999988765421
Q ss_pred ---CCce-EEEEcCCCCCCC-CC---CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC--
Q 022698 169 ---QEYV-TAREGDVRSLPF-GD---NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-- 238 (293)
Q Consensus 169 ---~~~v-~~~~~d~~~~~~-~~---~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-- 238 (293)
..++ .+.++|+.+... ++ ++||+|+++.+++++.+. ..++..+++++.++|||||.+++.+.
T Consensus 130 ~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~--------~~~~~~~l~~~~~~LkpgG~li~~~~~~ 201 (265)
T 2i62_A 130 EKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPD--------LPAYRTALRNLGSLLKPGGFLVMVDALK 201 (265)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSS--------HHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCC--------hHHHHHHHHHHHhhCCCCcEEEEEecCC
Confidence 0127 899999987542 44 789999999999844311 12788999999999999999988542
Q ss_pred ---------------CCchHHHHHHHHcCCcceEEeeee
Q 022698 239 ---------------LHVPEYVRRLQELKMEDIRVSERV 262 (293)
Q Consensus 239 ---------------~~~~~~~~~l~~~gf~~~~~~~~~ 262 (293)
...+++.++++++||+.++.....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 202 SSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp CCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 123488999999999988877543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=142.01 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=108.6
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC--ceEEEEcCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE--YVTAREGDV 179 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~--~v~~~~~d~ 179 (293)
..+.+++.+.. .++.+|||+|||+|.++..+++..| +.+|+++|+|+.+++.+++|+..+++.+ +++|...|+
T Consensus 210 ~~~~ll~~l~~-~~~~~VLDlGcG~G~~s~~la~~~p----~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~ 284 (375)
T 4dcm_A 210 GARFFMQHLPE-NLEGEIVDLGCGNGVIGLTLLDKNP----QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 284 (375)
T ss_dssp HHHHHHHTCCC-SCCSEEEEETCTTCHHHHHHHHHCT----TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECST
T ss_pred HHHHHHHhCcc-cCCCeEEEEeCcchHHHHHHHHHCC----CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechh
Confidence 34456666643 4457999999999999999998865 4699999999999999999999988643 588899999
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEe
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
.+ ++++++||+|++|+|+++.... .......+++++.++|+|||.++++.....+ +...+++. |..+++.
T Consensus 285 ~~-~~~~~~fD~Ii~nppfh~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~-~~~~l~~~-fg~~~~~ 354 (375)
T 4dcm_A 285 LS-GVEPFRFNAVLCNPPFHQQHAL-------TDNVAWEMFHHARRCLKINGELYIVANRHLD-YFHKLKKI-FGNCTTI 354 (375)
T ss_dssp TT-TCCTTCEEEEEECCCC--------------CCHHHHHHHHHHHHEEEEEEEEEEEETTSC-HHHHHHHH-HSCCEEE
T ss_pred hc-cCCCCCeeEEEECCCcccCccc-------CHHHHHHHHHHHHHhCCCCcEEEEEEECCcC-HHHHHHHh-cCCEEEE
Confidence 87 4567789999999999863210 0113347899999999999999996544332 23344332 4456666
Q ss_pred eeeccce
Q 022698 260 ERVTAFM 266 (293)
Q Consensus 260 ~~~~~~~ 266 (293)
..-.+|.
T Consensus 355 a~~~~F~ 361 (375)
T 4dcm_A 355 ATNNKFV 361 (375)
T ss_dssp EECSSEE
T ss_pred eeCCCEE
Confidence 6555553
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=131.52 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=105.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCC-cccEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDN-YFDVV 192 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~fD~I 192 (293)
.++.+|||||||+|.+++.+++..+ ..+|+++|+|+.+++.|++|++.+++.++++++.+|..+. ++.+ +||+|
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~----~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~-l~~~~~~D~I 88 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQ----IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA-FEETDQVSVI 88 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTS----EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-CCGGGCCCEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh-cccCcCCCEE
Confidence 4567999999999999999998754 4689999999999999999999999988899999999752 3333 69988
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEe
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
+....-. +-...++..+...|+|+|++++......+.+.+.|.+.||..++..
T Consensus 89 viaG~Gg--------------~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 89 TIAGMGG--------------RLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp EEEEECH--------------HHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEE
T ss_pred EEcCCCh--------------HHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEE
Confidence 8653311 1346788999999999999999877788889999999999977653
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=137.84 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=102.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++..++. ++++.++|+.+.+. +++||+|++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~------g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~fD~i~~ 190 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL------GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-QENYDFIVS 190 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-CSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-cCCccEEEE
Confidence 5679999999999999988876 35999999999999999999998876 59999999998765 778999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC---------------CCchHHHHHHHHcCCcceEEe
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL---------------LHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---------------~~~~~~~~~l~~~gf~~~~~~ 259 (293)
+.++++++ ..+...+++++.++|+|||.++++.. ....++.+.+.. |+.+...
T Consensus 191 ~~~~~~~~----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 191 TVVFMFLN----------RERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp CSSGGGSC----------GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred ccchhhCC----------HHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 99999886 22567899999999999999777432 113355555533 7776665
Q ss_pred ee
Q 022698 260 ER 261 (293)
Q Consensus 260 ~~ 261 (293)
+.
T Consensus 259 ~~ 260 (286)
T 3m70_A 259 EN 260 (286)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=139.14 Aligned_cols=139 Identities=19% Similarity=0.170 Sum_probs=113.2
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
...+++.+. ..+ .+|||+|||+|..+..+++..| +.+++++|+ +.+++.+++++...++.+++++..+|+.+
T Consensus 157 ~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~- 228 (334)
T 2ip2_A 157 FHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEP----SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ- 228 (334)
T ss_dssp HHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCT----TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-
T ss_pred HHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCC----CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-
Confidence 344555442 445 8999999999999999998876 469999999 99999999998877666779999999987
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-----------------------
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----------------------- 239 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------------- 239 (293)
+.+ ++||+|+++.++|+++ .++...+++++++.|+|||++++.+..
T Consensus 229 ~~~-~~~D~v~~~~vl~~~~----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (334)
T 2ip2_A 229 EVP-SNGDIYLLSRIIGDLD----------EAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAG 297 (334)
T ss_dssp CCC-SSCSEEEEESCGGGCC----------HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSC
T ss_pred CCC-CCCCEEEEchhccCCC----------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCC
Confidence 554 5799999999999887 224458999999999999999986532
Q ss_pred ---CchHHHHHHHHcCCcceEEee
Q 022698 240 ---HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 ---~~~~~~~~l~~~gf~~~~~~~ 260 (293)
..+++.++++++||+.+++..
T Consensus 298 ~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 298 RHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp CCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCHHHHHHHHHHCCCceeEEEE
Confidence 234678899999999888775
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=133.48 Aligned_cols=149 Identities=14% Similarity=0.104 Sum_probs=112.1
Q ss_pred cchHHHHHHHHHhcC--CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 97 PLHYDMAQRMVGSVN--DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
+....++..++.-+. .+.|+.+|||+|||+|..+..+++.... ..+|+|+|+|+.|++.++++++.. +++..
T Consensus 57 p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~---~G~V~avD~s~~~~~~l~~~a~~~---~ni~~ 130 (233)
T 4df3_A 57 AYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGP---RGRIYGVEFAPRVMRDLLTVVRDR---RNIFP 130 (233)
T ss_dssp TTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCT---TCEEEEEECCHHHHHHHHHHSTTC---TTEEE
T ss_pred CCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhhHhh---cCeeE
Confidence 444566666665443 3578999999999999999999988743 469999999999999999887664 35888
Q ss_pred EEcCCCCC---CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-----------
Q 022698 175 REGDVRSL---PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH----------- 240 (293)
Q Consensus 175 ~~~d~~~~---~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------- 240 (293)
+..|.... +...+++|+|++..+.+ . +...++.++.+.|||||+++++....
T Consensus 131 V~~d~~~p~~~~~~~~~vDvVf~d~~~~--~------------~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~ 196 (233)
T 4df3_A 131 ILGDARFPEKYRHLVEGVDGLYADVAQP--E------------QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEV 196 (233)
T ss_dssp EESCTTCGGGGTTTCCCEEEEEECCCCT--T------------HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHH
T ss_pred EEEeccCccccccccceEEEEEEeccCC--h------------hHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHH
Confidence 88888653 34467899999864432 2 66789999999999999998853221
Q ss_pred chHHHHHHHHcCCcceEEeeeeccce
Q 022698 241 VPEYVRRLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 241 ~~~~~~~l~~~gf~~~~~~~~~~~~~ 266 (293)
..+..+.|+++||+.++... +.+|.
T Consensus 197 ~~~ev~~L~~~GF~l~e~i~-L~pf~ 221 (233)
T 4df3_A 197 YKREIKTLMDGGLEIKDVVH-LDPFD 221 (233)
T ss_dssp HHHHHHHHHHTTCCEEEEEE-CTTTS
T ss_pred HHHHHHHHHHCCCEEEEEEc-cCCCC
Confidence 12456778899999887653 44443
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=133.10 Aligned_cols=141 Identities=15% Similarity=0.120 Sum_probs=103.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC----CCCCCCc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS----LPFGDNY 188 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~ 188 (293)
..++.+|||+|||+|.++..+++..+ ..+|+++|+|+.+++.++++++.+ +++.++.+|+.+ .++. ++
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~----~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~-~~ 143 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIAD----KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIV-EK 143 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT----TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTS-CC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC----CcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccC-cc
Confidence 45678999999999999999998865 359999999999999999997665 569999999987 5554 78
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE----cCCCc--------hHHHHHHHHcCCcce
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW----DLLHV--------PEYVRRLQELKMEDI 256 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~----~~~~~--------~~~~~~l~~~gf~~~ 256 (293)
||+|++.. + . ......+++++.+.|+|||.+++. +.... .++. .+.++||+.+
T Consensus 144 ~D~v~~~~-----~-~--------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~ 208 (230)
T 1fbn_A 144 VDVIYEDV-----A-Q--------PNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIV 208 (230)
T ss_dssp EEEEEECC-----C-S--------TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEE
T ss_pred EEEEEEec-----C-C--------hhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEE
Confidence 99999432 2 0 013367799999999999999884 11111 3444 7889999887
Q ss_pred EEeeeeccceecceeeeeecC
Q 022698 257 RVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~ 277 (293)
+.. ++..+.....++.++++
T Consensus 209 ~~~-~~~~~~~~~~~v~~~k~ 228 (230)
T 1fbn_A 209 DEV-DIEPFEKDHVMFVGIWE 228 (230)
T ss_dssp EEE-ECTTTSTTEEEEEEEEC
T ss_pred EEE-ccCCCccceEEEEEEeC
Confidence 765 34443212235566553
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=132.89 Aligned_cols=128 Identities=12% Similarity=0.023 Sum_probs=106.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||||||+|.+++.+++..+ ..+|+|+|+|+.+++.|++|++.+++.+++++..+|..+...+..+||+|+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~----~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iv 95 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQT----ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIV 95 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTS----EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEE
Confidence 4667999999999999999988744 458999999999999999999999998889999999988543333699988
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEe
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
+...-. +-...++.+..+.|+++|+|++......+.+.+.|.+.||..++..
T Consensus 96 iagmGg--------------~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 96 IAGMGG--------------TLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp EEEECH--------------HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHHTEEEEEEE
T ss_pred EeCCch--------------HHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHHCCCEEEEEE
Confidence 643221 1356788889999999999999888888899999999999975543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-17 Score=138.89 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+.+.+. .++.+|||||||+|..+..+++..+ .+++++|+|+.+++.|++++...+ .++.++.+|+.+
T Consensus 49 ~m~~~a~~~~--~~G~rVLdiG~G~G~~~~~~~~~~~-----~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~ 119 (236)
T 3orh_A 49 YMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAPI-----DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWED 119 (236)
T ss_dssp HHHHHHHHHT--TTCEEEEEECCTTSHHHHHHTTSCE-----EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHH
T ss_pred HHHHHHHhhc--cCCCeEEEECCCccHHHHHHHHhCC-----cEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHh
Confidence 3444444443 4678999999999999988876543 589999999999999999988776 348888888765
Q ss_pred C--CCCCCcccEEEecch-----hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---------------
Q 022698 182 L--PFGDNYFDVVVSAAF-----FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--------------- 239 (293)
Q Consensus 182 ~--~~~~~~fD~Iv~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--------------- 239 (293)
. ++++++||.|+...+ ..+.+ ++..+++++.|+|||||+|++.+..
T Consensus 120 ~~~~~~~~~FD~i~~D~~~~~~~~~~~~------------~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~ 187 (236)
T 3orh_A 120 VAPTLPDGHFDGILYDTYPLSEETWHTH------------QFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITI 187 (236)
T ss_dssp HGGGSCTTCEEEEEECCCCCBGGGTTTH------------HHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHH
T ss_pred hcccccccCCceEEEeeeecccchhhhc------------chhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhh
Confidence 3 356788999986433 33444 8889999999999999999885411
Q ss_pred -CchHHHHHHHHcCCcceEEee
Q 022698 240 -HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 -~~~~~~~~l~~~gf~~~~~~~ 260 (293)
........|.++||+...+..
T Consensus 188 ~~~~~~~~~L~eaGF~~~~i~~ 209 (236)
T 3orh_A 188 MFEETQVPALLEAGFRRENIRT 209 (236)
T ss_dssp HHHHHTHHHHHHHTCCGGGEEE
T ss_pred hhHHHHHHHHHHcCCeEEEEEE
Confidence 112455677889999776643
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=138.71 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=97.8
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEEcC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-GVQEYVTAREGD 178 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-~~~~~v~~~~~d 178 (293)
..+.+.+..... .++.+|||+|||+|..+..+++.++. +.+|+|+|+|+.+++.+++++... +...+++++++|
T Consensus 23 ~~~~~~l~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 97 (299)
T 3g5t_A 23 SDFYKMIDEYHD--GERKLLVDVGCGPGTATLQMAQELKP---FEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISS 97 (299)
T ss_dssp HHHHHHHHHHCC--SCCSEEEEETCTTTHHHHHHHHHSSC---CSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECC
T ss_pred HHHHHHHHHHhc--CCCCEEEEECCCCCHHHHHHHHhCCC---CCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcC
Confidence 345555555443 46789999999999999999976521 579999999999999999998886 444679999999
Q ss_pred CCCCCCCC------CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 179 VRSLPFGD------NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 179 ~~~~~~~~------~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+.++++.. ++||+|+++.+++++ ++..+++++.++|+|||.+++
T Consensus 98 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-------------~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 98 SDDFKFLGADSVDKQKIDMITAVECAHWF-------------DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp TTCCGGGCTTTTTSSCEEEEEEESCGGGS-------------CHHHHHHHHHHHEEEEEEEEE
T ss_pred HHhCCccccccccCCCeeEEeHhhHHHHh-------------CHHHHHHHHHHhcCCCcEEEE
Confidence 99987666 799999999999887 467899999999999999988
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-15 Score=129.66 Aligned_cols=112 Identities=27% Similarity=0.375 Sum_probs=88.7
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
..++.... ..++.+|||+|||+|..+..+++. +.+++|+|+|+.+++.+++++...+. ++.+.++|+.+++
T Consensus 31 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~ 101 (252)
T 1wzn_A 31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAER------GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA 101 (252)
T ss_dssp HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC
T ss_pred HHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcc
Confidence 33444432 245679999999999999988865 35999999999999999999887764 4899999999876
Q ss_pred CCCCcccEEEecc-hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 184 FGDNYFDVVVSAA-FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 184 ~~~~~fD~Iv~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.+ ++||+|++.. .+++.+ ..+...+++++.++|+|||.+++
T Consensus 102 ~~-~~fD~v~~~~~~~~~~~----------~~~~~~~l~~~~~~L~pgG~li~ 143 (252)
T 1wzn_A 102 FK-NEFDAVTMFFSTIMYFD----------EEDLRKLFSKVAEALKPGGVFIT 143 (252)
T ss_dssp CC-SCEEEEEECSSGGGGSC----------HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cC-CCccEEEEcCCchhcCC----------HHHHHHHHHHHHHHcCCCeEEEE
Confidence 54 6899999863 333333 23778999999999999999875
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-17 Score=135.99 Aligned_cols=120 Identities=22% Similarity=0.348 Sum_probs=101.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
+.+|||+|||+|.++..++. . +++|+|+.+++.++++ ++.+...|+.++++++++||+|+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~---------~-~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKI---------K-IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMV 109 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTC---------C-EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHH---------H-hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEc
Confidence 67999999999999876642 2 9999999999988876 2789999998888777899999999
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------CCchHHHHHHHH
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-------------------------LHVPEYVRRLQE 250 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------------~~~~~~~~~l~~ 250 (293)
.++++++ ++..+++++.++|+|||.+++... ....++.+++++
T Consensus 110 ~~l~~~~------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 177 (219)
T 1vlm_A 110 TTICFVD------------DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRK 177 (219)
T ss_dssp SCGGGSS------------CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHH
T ss_pred chHhhcc------------CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHH
Confidence 9999987 788999999999999999988532 134678999999
Q ss_pred cCCcceEEeeeeccc
Q 022698 251 LKMEDIRVSERVTAF 265 (293)
Q Consensus 251 ~gf~~~~~~~~~~~~ 265 (293)
+||+.+++.......
T Consensus 178 ~Gf~~~~~~~~~~~~ 192 (219)
T 1vlm_A 178 AGFEEFKVVQTLFKH 192 (219)
T ss_dssp TTCEEEEEEEECCSC
T ss_pred CCCeEEEEecccCCC
Confidence 999999888766553
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=135.10 Aligned_cols=143 Identities=23% Similarity=0.272 Sum_probs=115.5
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.....++..+. ..++.+|||+|||+|..+..+++.+. ++.+++++|+|+.+++.|+++++..++.+++++...
T Consensus 77 ~~~~~~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~ 152 (255)
T 3mb5_A 77 VHPKDAALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVG---PEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLK 152 (255)
T ss_dssp CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHC---TTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECS
T ss_pred ccHhHHHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhC---CCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 34445556666553 56788999999999999999988742 146999999999999999999999888777999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcC--C
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELK--M 253 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~g--f 253 (293)
|+.+. +++++||+|+++.+ ++..+++++.++|+|||.+++.... +..+..+.+++.| |
T Consensus 153 d~~~~-~~~~~~D~v~~~~~-----------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f 214 (255)
T 3mb5_A 153 DIYEG-IEEENVDHVILDLP-----------------QPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYF 214 (255)
T ss_dssp CGGGC-CCCCSEEEEEECSS-----------------CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGB
T ss_pred chhhc-cCCCCcCEEEECCC-----------------CHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 99874 56778999999643 3456889999999999999987643 3457888899999 9
Q ss_pred cceEEeeee
Q 022698 254 EDIRVSERV 262 (293)
Q Consensus 254 ~~~~~~~~~ 262 (293)
..+++.+..
T Consensus 215 ~~~~~~e~~ 223 (255)
T 3mb5_A 215 MKPRTINVL 223 (255)
T ss_dssp SCCEEECCC
T ss_pred cccEEEEEe
Confidence 998886543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=137.81 Aligned_cols=134 Identities=20% Similarity=0.161 Sum_probs=98.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-----------------CCC--------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-----------------GVQ-------- 169 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-----------------~~~-------- 169 (293)
++.+|||||||+|..+..++ ..+ +.+|+|+|+|+.|++.|+++++.. +..
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~-~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSA-CSH----FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 145 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTG-GGG----CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhh-ccC----CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHH
Confidence 56799999999999543222 222 359999999999999998865421 100
Q ss_pred ----CceEEEEcCCCC-CCC-----CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc--
Q 022698 170 ----EYVTAREGDVRS-LPF-----GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD-- 237 (293)
Q Consensus 170 ----~~v~~~~~d~~~-~~~-----~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-- 237 (293)
..+.++.+|+.+ +++ ++++||+|+++.+++++..+ ..++..+++++.++|||||.|++.+
T Consensus 146 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~--------~~~~~~~l~~~~r~LkpGG~l~~~~~~ 217 (289)
T 2g72_A 146 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPD--------LASFQRALDHITTLLRPGGHLLLIGAL 217 (289)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSS--------HHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred HHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCC--------HHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 015677889887 543 34679999999999984310 1178899999999999999999842
Q ss_pred ---------------CCCchHHHHHHHHcCCcceEEeee
Q 022698 238 ---------------LLHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 238 ---------------~~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
....+++.++|+++||+.+++...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 218 EESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp SCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred CcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 124567899999999998887643
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=128.85 Aligned_cols=137 Identities=22% Similarity=0.282 Sum_probs=109.0
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
....+...+++.+. ..++.+|||+|||+|..+..+++.. .+++++|+|+.+++.+++++..++..+++.+...
T Consensus 17 ~~~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (192)
T 1l3i_A 17 TAMEVRCLIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV------RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG 89 (192)
T ss_dssp CCHHHHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS------SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES
T ss_pred ChHHHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc------CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEec
Confidence 44566666776664 4677899999999999998887653 4999999999999999999998887567999999
Q ss_pred CCCCCCCCC-CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCc
Q 022698 178 DVRSLPFGD-NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKME 254 (293)
Q Consensus 178 d~~~~~~~~-~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~ 254 (293)
|+.+ +++. ++||+|+++.++++ ...+++++.++|+|||.+++.... ...+..+.+++.||.
T Consensus 90 d~~~-~~~~~~~~D~v~~~~~~~~---------------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 153 (192)
T 1l3i_A 90 DAPE-ALCKIPDIDIAVVGGSGGE---------------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFD 153 (192)
T ss_dssp CHHH-HHTTSCCEEEEEESCCTTC---------------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCC
T ss_pred CHHH-hcccCCCCCEEEECCchHH---------------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCc
Confidence 9876 2232 58999999877643 357899999999999999986543 345678888999994
Q ss_pred ceEE
Q 022698 255 DIRV 258 (293)
Q Consensus 255 ~~~~ 258 (293)
++.
T Consensus 154 -~~~ 156 (192)
T 1l3i_A 154 -VNI 156 (192)
T ss_dssp -CEE
T ss_pred -eEE
Confidence 443
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=131.79 Aligned_cols=108 Identities=22% Similarity=0.288 Sum_probs=90.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.+|||+|||+|..+..++... +.+++++|+|+.+++.+++++...+ .++.+.++|+.++++++++||+|
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v 93 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVED-----GYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFV 93 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHT-----TCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEE
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhC-----CCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEE
Confidence 3567899999999999855454332 4699999999999999999988765 34889999999888777899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+++.++++++ ..++..+++++.++|+|||.+++..
T Consensus 94 ~~~~~l~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 94 YSYGTIFHMR----------KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp EECSCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcChHHhCC----------HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999888884 2388899999999999999998843
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-16 Score=133.87 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=101.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.|++|++.+++.++++++++|+.+++. .++||+|+
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~-----~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi 197 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGK-----AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRIL 197 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTC-----CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred CCCCEEEEecccCCHHHHHHHHhCC-----CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEE
Confidence 4578999999999999999987732 27999999999999999999999987779999999998765 67899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--------CchHHHHHHHHcCCcceE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--------HVPEYVRRLQELKMEDIR 257 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--------~~~~~~~~l~~~gf~~~~ 257 (293)
++++... ..+++++.++|+|||++++.++. ....+.+.+++.||....
T Consensus 198 ~~~p~~~----------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 198 MGYVVRT----------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ECCCSSG----------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ECCchhH----------------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 9877432 35778899999999999985543 235677888899997544
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=136.71 Aligned_cols=141 Identities=20% Similarity=0.202 Sum_probs=113.1
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
....++..+ ...++.+|||+|||+|.++..+++.+.. ..+++++|+|+.+++.++++++..++.+++.+...|+.+
T Consensus 100 ~~~~i~~~~-~~~~~~~VLDiG~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 175 (277)
T 1o54_A 100 DSSFIAMML-DVKEGDRIIDTGVGSGAMCAVLARAVGS---SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE 175 (277)
T ss_dssp HHHHHHHHT-TCCTTCEEEEECCTTSHHHHHHHHHTTT---TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred HHHHHHHHh-CCCCCCEEEEECCcCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence 334455554 3567789999999999999999887421 469999999999999999999988876679999999987
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEEe
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~~ 259 (293)
. +++++||+|+++++ ++..+++++.++|+|||.+++.... +..++.+.+++.||..+++.
T Consensus 176 ~-~~~~~~D~V~~~~~-----------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 176 G-FDEKDVDALFLDVP-----------------DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVW 237 (277)
T ss_dssp C-CSCCSEEEEEECCS-----------------CGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEE
T ss_pred c-ccCCccCEEEECCc-----------------CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEE
Confidence 5 55678999999753 3457889999999999999997654 34567788889999988887
Q ss_pred eeecc
Q 022698 260 ERVTA 264 (293)
Q Consensus 260 ~~~~~ 264 (293)
+++..
T Consensus 238 ~~~~~ 242 (277)
T 1o54_A 238 ESLFR 242 (277)
T ss_dssp CCCCC
T ss_pred EEeee
Confidence 66544
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-16 Score=124.06 Aligned_cols=135 Identities=11% Similarity=0.122 Sum_probs=109.0
Q ss_pred cchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
...+.+.+.+++.+. ..++.+|||+|||+|.++..+++ + +.+++++|+|+.+++.+++++..++. +++++.+
T Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~----~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~ 89 (183)
T 2yxd_A 18 ITKEEIRAVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--R----CKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIK 89 (183)
T ss_dssp CCCHHHHHHHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--T----SSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEE
T ss_pred cCHHHHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--c----CCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 345667777777764 45678999999999999998886 2 56999999999999999999998886 5699999
Q ss_pred cCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHcCCc
Q 022698 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELKME 254 (293)
Q Consensus 177 ~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~gf~ 254 (293)
+|+.+ ++++++||+|+++.+ . +...+++++.++ |||.+++..... ..+..+.+++.||.
T Consensus 90 ~d~~~-~~~~~~~D~i~~~~~----~------------~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 150 (183)
T 2yxd_A 90 GRAED-VLDKLEFNKAFIGGT----K------------NIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYN 150 (183)
T ss_dssp SCHHH-HGGGCCCSEEEECSC----S------------CHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCE
T ss_pred CCccc-cccCCCCcEEEECCc----c------------cHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCe
Confidence 99987 555678999999987 3 556888888888 999999976443 45688889999976
Q ss_pred ceEE
Q 022698 255 DIRV 258 (293)
Q Consensus 255 ~~~~ 258 (293)
...+
T Consensus 151 ~~~~ 154 (183)
T 2yxd_A 151 VDAV 154 (183)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.8e-17 Score=129.58 Aligned_cols=120 Identities=11% Similarity=0.081 Sum_probs=93.8
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
.+.+.+++.+....++.+|||+|||+|.++..+++. + ..+++++|+|+.+++.++++++.+++.++++++.+|+.
T Consensus 17 ~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 91 (177)
T 2esr_A 17 KVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-G----MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAE 91 (177)
T ss_dssp -CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-T----CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHH
T ss_pred HHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-C----CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHH
Confidence 345556666553456789999999999999988865 2 35999999999999999999999887778999999987
Q ss_pred CC-CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHH--HcccCCcEEEEEcC
Q 022698 181 SL-PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV--RVLKPGGVGVVWDL 238 (293)
Q Consensus 181 ~~-~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 238 (293)
+. +...++||+|+++++++.. .....++.+. ++|+|||.+++...
T Consensus 92 ~~~~~~~~~fD~i~~~~~~~~~-------------~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 92 RAIDCLTGRFDLVFLDPPYAKE-------------TIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp HHHHHBCSCEEEEEECCSSHHH-------------HHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HhHHhhcCCCCEEEECCCCCcc-------------hHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 73 3334679999999887532 4455666666 99999999998543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=126.87 Aligned_cols=132 Identities=20% Similarity=0.157 Sum_probs=102.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++..+ .+++++|+|+.+++.++++.... +++.+.++|+.++++++++||+|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~-----~~v~~~D~s~~~~~~a~~~~~~~---~~i~~~~~d~~~~~~~~~~fD~v~ 112 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGF-----PNVTSVDYSSVVVAAMQACYAHV---PQLRWETMDVRKLDFPSASFDVVL 112 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTC-----CCEEEEESCHHHHHHHHHHTTTC---TTCEEEECCTTSCCSCSSCEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCC-----CcEEEEeCCHHHHHHHHHhcccC---CCcEEEEcchhcCCCCCCcccEEE
Confidence 4667999999999999998887622 38999999999999999987642 458999999998877778999999
Q ss_pred ecchhhhhccc---cCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCC
Q 022698 194 SAAFFHTVGKE---YGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKM 253 (293)
Q Consensus 194 ~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf 253 (293)
++.+++++... +.........+...+++++.++|+|||.+++.+..........+...||
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 175 (215)
T 2pxx_A 113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYY 175 (215)
T ss_dssp EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHHHHHHCCGGG
T ss_pred ECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHHHHHHhcccc
Confidence 99998765311 1111112234678999999999999999999887765555566666666
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-15 Score=135.22 Aligned_cols=146 Identities=20% Similarity=0.274 Sum_probs=117.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
+.+..+|+|||||+|..+..+++..| ..+++..|. |.+++.++++....+ .++++++.+|+.+.+. ..+|+|
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p----~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~--~~~D~~ 248 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYP----GCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL--PEADLY 248 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCS----SCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC--CCCSEE
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCC----CceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCC--CCceEE
Confidence 45567999999999999999999987 568999997 889999998876554 5789999999987554 358999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---------------------------CchHHH
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------------------HVPEYV 245 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------------~~~~~~ 245 (293)
++..++|.++ +++...+|+++++.|+|||++++++.. +.+++.
T Consensus 249 ~~~~vlh~~~----------d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~ 318 (353)
T 4a6d_A 249 ILARVLHDWA----------DGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYH 318 (353)
T ss_dssp EEESSGGGSC----------HHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHH
T ss_pred EeeeecccCC----------HHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 9999999988 335578999999999999999997642 234789
Q ss_pred HHHHHcCCcceEEeeeeccceecceeeeeecCCCC
Q 022698 246 RRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQH 280 (293)
Q Consensus 246 ~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (293)
++++++||+.+++++. .+.. .++.++|.+.+
T Consensus 319 ~ll~~AGf~~v~v~~~-~~~~---~~i~ArKgt~~ 349 (353)
T 4a6d_A 319 MLLSSAGFRDFQFKKT-GAIY---DAILARKGTHH 349 (353)
T ss_dssp HHHHHHTCEEEEEECC-SSSC---EEEEEECCCC-
T ss_pred HHHHHCCCceEEEEEc-CCce---EEEEEEecCcc
Confidence 9999999999998764 3322 58889997754
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-16 Score=131.13 Aligned_cols=129 Identities=19% Similarity=0.302 Sum_probs=104.2
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC--C
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS--L 182 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~--~ 182 (293)
.+++.+. .++.+|||+|||+|..+..+++. + .+++++|+|+.+++.++++. .++...|+.+ .
T Consensus 24 ~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-----~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~ 87 (230)
T 3cc8_A 24 NLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-----TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDM 87 (230)
T ss_dssp HHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-----CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCC
T ss_pred HHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCC
Confidence 3444443 46779999999999999888765 2 59999999999998887653 2678899876 4
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------------
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------------ 238 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------------ 238 (293)
++++++||+|+++.++++++ ++..+++++.++|+|||.+++...
T Consensus 88 ~~~~~~fD~v~~~~~l~~~~------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (230)
T 3cc8_A 88 PYEEEQFDCVIFGDVLEHLF------------DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLL 155 (230)
T ss_dssp CSCTTCEEEEEEESCGGGSS------------CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTT
T ss_pred CCCCCccCEEEECChhhhcC------------CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCC
Confidence 55678999999999999988 778999999999999999988431
Q ss_pred -------CCchHHHHHHHHcCCcceEEeee
Q 022698 239 -------LHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 239 -------~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
....++.++++++||+.+++...
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 156 DKTHIRFFTFNEMLRMFLKAGYSISKVDRV 185 (230)
T ss_dssp BTTCCCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred CcceEEEecHHHHHHHHHHcCCeEEEEEec
Confidence 13467889999999998877653
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-16 Score=132.40 Aligned_cols=142 Identities=22% Similarity=0.168 Sum_probs=113.0
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEE
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-GVQEYVTARE 176 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-~~~~~v~~~~ 176 (293)
..+.....++..+. ..++.+|||+|||+|.++..+++.+. ++.+++++|+|+.+++.++++++.+ + .+++.+..
T Consensus 80 ~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~ 154 (258)
T 2pwy_A 80 TYPKDASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVG---EKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHL 154 (258)
T ss_dssp CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHC---TTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEE
T ss_pred ccchHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 33445556666653 56788999999999999999988752 1469999999999999999999887 6 46799999
Q ss_pred cCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHcCCc
Q 022698 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELKME 254 (293)
Q Consensus 177 ~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~gf~ 254 (293)
.|+.+.++++++||+|+++.+ ++..+++++.++|+|||.++++.... ..+..+.+++.||.
T Consensus 155 ~d~~~~~~~~~~~D~v~~~~~-----------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 155 GKLEEAELEEAAYDGVALDLM-----------------EPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp SCGGGCCCCTTCEEEEEEESS-----------------CGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred CchhhcCCCCCCcCEEEECCc-----------------CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 999887666778999998532 34578899999999999999977543 34677778889999
Q ss_pred ceEEeee
Q 022698 255 DIRVSER 261 (293)
Q Consensus 255 ~~~~~~~ 261 (293)
.+++.+.
T Consensus 218 ~~~~~~~ 224 (258)
T 2pwy_A 218 LERVLEV 224 (258)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 8887653
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.8e-17 Score=133.61 Aligned_cols=107 Identities=18% Similarity=0.083 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCCCC--CCCc-cc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSLPF--GDNY-FD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~~--~~~~-fD 190 (293)
++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++|++.+++. ++++++++|+.+... .+++ ||
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD 127 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-----AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFD 127 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-----CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-----CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCC
Confidence 46799999999999998876552 248999999999999999999988874 569999999876432 3578 99
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHH--HHcccCCcEEEEEcCC
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEM--VRVLKPGGVGVVWDLL 239 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~ 239 (293)
+|+++++|+ .. +...+++.+ .++|+|||.+++....
T Consensus 128 ~I~~~~~~~-~~------------~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 128 VVFLDPPFH-FN------------LAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp EEEECCCSS-SC------------HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred EEEECCCCC-Cc------------cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 999999965 33 566778888 6789999999885543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-16 Score=128.73 Aligned_cols=108 Identities=30% Similarity=0.324 Sum_probs=90.2
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.++..+.. ++.+|||+|||+|..+..+ + ..+++++|+|+.+++.++++. .++.+.+.|+.++++
T Consensus 28 ~~l~~~~~--~~~~vLdiG~G~G~~~~~l----~----~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~ 91 (211)
T 2gs9_A 28 RALKGLLP--PGESLLEVGAGTGYWLRRL----P----YPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPF 91 (211)
T ss_dssp HHHHTTCC--CCSEEEEETCTTCHHHHHC----C----CSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCS
T ss_pred HHHHHhcC--CCCeEEEECCCCCHhHHhC----C----CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCC
Confidence 34444432 6779999999999988665 1 238999999999999998886 347899999998887
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
++++||+|+++.++++++ ++..+++++.++|||||.+++.....
T Consensus 92 ~~~~fD~v~~~~~l~~~~------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 92 PGESFDVVLLFTTLEFVE------------DVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp CSSCEEEEEEESCTTTCS------------CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCCcEEEEEEcChhhhcC------------CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 788999999999999998 78899999999999999999865443
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=128.86 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=97.1
Q ss_pred cchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
+..+.+.+.+++.+....++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.+++++..+++.+++++++
T Consensus 26 p~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 100 (187)
T 2fhp_A 26 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-G----MDKSICIEKNFAALKVIKENIAITKEPEKFEVRK 100 (187)
T ss_dssp CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred cCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-C----CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEE
Confidence 3456677777777754456789999999999999987763 2 3599999999999999999999988767899999
Q ss_pred cCCCCCC----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHH--HHcccCCcEEEEEcC
Q 022698 177 GDVRSLP----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEM--VRVLKPGGVGVVWDL 238 (293)
Q Consensus 177 ~d~~~~~----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~ 238 (293)
+|+.+.. ...++||+|+++++++.. +....++.+ .++|+|||.+++...
T Consensus 101 ~d~~~~~~~~~~~~~~fD~i~~~~~~~~~-------------~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 101 MDANRALEQFYEEKLQFDLVLLDPPYAKQ-------------EIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCGGGC-------------CHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CcHHHHHHHHHhcCCCCCEEEECCCCCch-------------hHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 9987632 125789999999997632 234455555 889999999988543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-15 Score=125.30 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=111.0
Q ss_pred CccchHHHHHHHHHhcCC--CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCce
Q 022698 95 AVPLHYDMAQRMVGSVND--WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYV 172 (293)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v 172 (293)
..+.+..+...++..+.. +.++.+|||+|||+|..+..+++.... ..+|+|+|+|+.+++.+.+.++.. .++
T Consensus 54 w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~---~G~V~avD~s~~~l~~l~~~a~~r---~nv 127 (232)
T 3id6_C 54 WNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIEL---NGKAYGVEFSPRVVRELLLVAQRR---PNI 127 (232)
T ss_dssp CCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTT---TSEEEEEECCHHHHHHHHHHHHHC---TTE
T ss_pred hchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCC---CCEEEEEECcHHHHHHHHHHhhhc---CCe
Confidence 344566677777776642 568899999999999999999987653 359999999999987666555443 359
Q ss_pred EEEEcCCCCCC---CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------
Q 022698 173 TAREGDVRSLP---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------- 239 (293)
Q Consensus 173 ~~~~~d~~~~~---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------- 239 (293)
.++.+|+.... ...++||+|+++.+. + .....+...+.+.|||||+|++.-..
T Consensus 128 ~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~-----------~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~ 193 (232)
T 3id6_C 128 FPLLADARFPQSYKSVVENVDVLYVDIAQ---P-----------DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPK 193 (232)
T ss_dssp EEEECCTTCGGGTTTTCCCEEEEEECCCC---T-----------THHHHHHHHHHHHEEEEEEEEEEEC-------CCSS
T ss_pred EEEEcccccchhhhccccceEEEEecCCC---h-----------hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHH
Confidence 99999987632 124689999998553 2 02334455666799999999884211
Q ss_pred -CchHHHHHHHHcCCcceEEeeeeccceecceeeeeec
Q 022698 240 -HVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 240 -~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
...+..+.|+++||+.++.. ++.++.-..-++.+++
T Consensus 194 e~~~~~~~~L~~~gf~~~~~~-~l~p~~~~h~~v~~~~ 230 (232)
T 3id6_C 194 EIYKTEVEKLENSNFETIQII-NLDPYDKDHAIVLSKY 230 (232)
T ss_dssp SSTTHHHHHHHHTTEEEEEEE-ECTTTCSSCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEe-ccCCCcCceEEEEEEe
Confidence 12457788889999988766 3444421223444444
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-16 Score=131.26 Aligned_cols=143 Identities=15% Similarity=0.102 Sum_probs=103.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC---CCCCCcc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL---PFGDNYF 189 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~f 189 (293)
..++.+|||+|||+|.++..+++.... ..+|+++|+|+.+++.+.++++.+ .++.+..+|+.+. +...++|
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~---~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~ 148 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGP---DGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMV 148 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcE
Confidence 456789999999999999999987621 359999999999999888888775 4599999999873 3346789
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC------Cc-----hHHHHHHHHcCCcceEE
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------HV-----PEYVRRLQELKMEDIRV 258 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------~~-----~~~~~~l~~~gf~~~~~ 258 (293)
|+|+++.+ ... ....++.++.++|||||++++.... .. ....+.|+++||+.++.
T Consensus 149 D~V~~~~~--~~~------------~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 214 (233)
T 2ipx_A 149 DVIFADVA--QPD------------QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQ 214 (233)
T ss_dssp EEEEECCC--CTT------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEE
T ss_pred EEEEEcCC--Ccc------------HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEE
Confidence 99999866 111 4456788899999999999983221 00 11157778899998775
Q ss_pred eeeeccceecceeeeeec
Q 022698 259 SERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~ 276 (293)
.. +..++....++.+++
T Consensus 215 ~~-~~~~~~~~~~v~~~~ 231 (233)
T 2ipx_A 215 LT-LEPYERDHAVVVGVY 231 (233)
T ss_dssp EE-CTTTSSSEEEEEEEE
T ss_pred Ee-cCCccCCcEEEEEEe
Confidence 43 344432234455443
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-16 Score=140.50 Aligned_cols=126 Identities=19% Similarity=0.189 Sum_probs=100.1
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH-------HhcCC-C
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA-------KMEGV-Q 169 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~-------~~~~~-~ 169 (293)
.....+..+++.+. +.++.+|||||||+|.+++.++...+ ..+++|+|+|+.+++.|+++. +.+++ .
T Consensus 157 t~~~~i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g----~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~ 231 (438)
T 3uwp_A 157 TSFDLVAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATN----CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH 231 (438)
T ss_dssp THHHHHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCC----CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCC
T ss_pred CCHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34567777787764 57788999999999999999987643 236999999999999998764 33454 2
Q ss_pred CceEEEEcCCCCCCCCC--CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc
Q 022698 170 EYVTAREGDVRSLPFGD--NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV 241 (293)
Q Consensus 170 ~~v~~~~~d~~~~~~~~--~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 241 (293)
++++|+++|+.++++.+ ..||+|++|+++. .+ +....|+++.+.|||||+|++.+....
T Consensus 232 ~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F-~p------------dl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 232 AEYTLERGDFLSEEWRERIANTSVIFVNNFAF-GP------------EVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp CEEEEEECCTTSHHHHHHHHTCSEEEECCTTC-CH------------HHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred CCeEEEECcccCCccccccCCccEEEEccccc-Cc------------hHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 57999999999876533 4699999998764 34 777888999999999999999765443
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.9e-16 Score=137.44 Aligned_cols=135 Identities=23% Similarity=0.208 Sum_probs=105.2
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+++.+ .+.+..+|||||||+|..+..+++..+ +.+++++|+ +.++. +++.+..+..+++++..+|+.+ +.
T Consensus 175 ~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~ 245 (348)
T 3lst_A 175 ILARAG-DFPATGTVADVGGGRGGFLLTVLREHP----GLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-EV 245 (348)
T ss_dssp HHHHHS-CCCSSEEEEEETCTTSHHHHHHHHHCT----TEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-CC
T ss_pred HHHHhC-CccCCceEEEECCccCHHHHHHHHHCC----CCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-CC
Confidence 344444 345678999999999999999998876 468999999 44444 3333334555679999999973 44
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------------------
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------- 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------- 239 (293)
+ +||+|+++.++|+++ +.+...++++++++|||||++++.+..
T Consensus 246 p--~~D~v~~~~vlh~~~----------d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~ 313 (348)
T 3lst_A 246 P--HADVHVLKRILHNWG----------DEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQE 313 (348)
T ss_dssp C--CCSEEEEESCGGGSC----------HHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCC
T ss_pred C--CCcEEEEehhccCCC----------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcC
Confidence 4 799999999999988 223379999999999999999986531
Q ss_pred -CchHHHHHHHHcCCcceEEee
Q 022698 240 -HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 -~~~~~~~~l~~~gf~~~~~~~ 260 (293)
..+++.++++++||+.++++.
T Consensus 314 ~t~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 314 RTAAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp CBHHHHHHHHHHTTEEEEEEEE
T ss_pred CCHHHHHHHHHHCCCceEEEEE
Confidence 235788999999999998876
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-16 Score=130.63 Aligned_cols=129 Identities=18% Similarity=0.168 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
..+.+.++.... .++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++ .++++++++|+
T Consensus 35 ~~l~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~ 100 (226)
T 3m33_A 35 ELTFDLWLSRLL--TPQTRVLEAGCGHGPDAARFGPQ------AARWAAYDFSPELLKLARAN------APHADVYEWNG 100 (226)
T ss_dssp THHHHHHHHHHC--CTTCEEEEESCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHH------CTTSEEEECCS
T ss_pred HHHHHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHh------CCCceEEEcch
Confidence 345555554432 45789999999999999888765 35999999999999999988 13589999999
Q ss_pred -CCCCCC-CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE-cCCCchHHHHHHHHcCCcce
Q 022698 180 -RSLPFG-DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW-DLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 180 -~~~~~~-~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~l~~~gf~~~ 256 (293)
..++++ +++||+|+++. ++..+++++.++|||||.++.. .....+++.+.+.++||..+
T Consensus 101 ~~~~~~~~~~~fD~v~~~~------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~ 162 (226)
T 3m33_A 101 KGELPAGLGAPFGLIVSRR------------------GPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIV 162 (226)
T ss_dssp CSSCCTTCCCCEEEEEEES------------------CCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEE
T ss_pred hhccCCcCCCCEEEEEeCC------------------CHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEE
Confidence 456666 78999999982 3457788999999999999853 34466789999999999987
Q ss_pred EEee
Q 022698 257 RVSE 260 (293)
Q Consensus 257 ~~~~ 260 (293)
++..
T Consensus 163 ~~~~ 166 (226)
T 3m33_A 163 AEDH 166 (226)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7653
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=132.89 Aligned_cols=135 Identities=16% Similarity=0.138 Sum_probs=96.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C--CCCCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P--FGDNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~fD~ 191 (293)
++.+|||||||+|.++..+++..+ +.+|+|+|+|+.+++.|++++..+++. ++.++++|+.++ + +++++||.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p----~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~~~~~d~ 108 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRP----EQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIPDNSLRM 108 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCT----TSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSCTTCEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCC----CCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcCCCChhe
Confidence 456999999999999999998866 468999999999999999999988874 599999998773 2 56789999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHc-CCcceEE
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQEL-KMEDIRV 258 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~-gf~~~~~ 258 (293)
|+++.+..+........-. ....+++++.++|||||.+++..... ..+..+.+.+. +|+.+..
T Consensus 109 v~~~~~~p~~~~~~~~rr~----~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~~~~ 174 (218)
T 3dxy_A 109 VQLFFPDPWHKARHNKRRI----VQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSE 174 (218)
T ss_dssp EEEESCCCCCSGGGGGGSS----CSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEECCT
T ss_pred EEEeCCCCccchhhhhhhh----hhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCcccccC
Confidence 9998432221100000000 01258999999999999998865322 23344455443 4655443
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-16 Score=132.47 Aligned_cols=131 Identities=19% Similarity=0.180 Sum_probs=96.9
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHH--hhhcCCCcEEEEEeCCHHHHHHHHHHHHhc---CCCCc----
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQ--FKKTGSLGRVVGLDCKKRTTLSTLRTAKME---GVQEY---- 171 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~~~~~~v~~vDis~~~l~~a~~~~~~~---~~~~~---- 171 (293)
++...+++.+.. .++.+|||+|||+|.++..++.. .+ +.+|+|+|+|+.+++.|++++... ++.++
T Consensus 38 ~l~~~~l~~~~~-~~~~~vLD~gcGsG~~~~~la~~~~~~----~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~ 112 (250)
T 1o9g_A 38 EIFQRALARLPG-DGPVTLWDPCCGSGYLLTVLGLLHRRS----LRQVIASDVDPAPLELAAKNLALLSPAGLTARELER 112 (250)
T ss_dssp HHHHHHHHTSSC-CSCEEEEETTCTTSHHHHHHHHHTGGG----EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-CCCCeEEECCCCCCHHHHHHHHHhccC----CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhh
Confidence 556666655432 34579999999999999999887 43 469999999999999999988765 43222
Q ss_pred ---------------------eE-------------EEEcCCCCCCC-----CCCcccEEEecchhhhhccccCcchhhh
Q 022698 172 ---------------------VT-------------AREGDVRSLPF-----GDNYFDVVVSAAFFHTVGKEYGHRTVEA 212 (293)
Q Consensus 172 ---------------------v~-------------~~~~d~~~~~~-----~~~~fD~Iv~~~~~~~~~~~~~~~~~~~ 212 (293)
++ +.+.|+.+... ...+||+|+||+|+......... ..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~---~~ 189 (250)
T 1o9g_A 113 REQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQ---VP 189 (250)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSC---CC
T ss_pred hhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeecccccccc---cc
Confidence 56 99999887421 34489999999998765421110 11
Q ss_pred HHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 213 AAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 213 ~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
.+....+++++.++|+|||++++++..
T Consensus 190 ~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 190 GQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred ccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 236678999999999999999986543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.8e-16 Score=137.59 Aligned_cols=154 Identities=22% Similarity=0.233 Sum_probs=109.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.+++.+.. .++.+|||+|||+|.++..+++..+ ..+++++|+|+.+++.+++++..++.. +++...|+.+
T Consensus 184 ~~~~ll~~l~~-~~~~~VLDlGcG~G~~~~~la~~~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~ 256 (343)
T 2pjd_A 184 GSQLLLSTLTP-HTKGKVLDVGCGAGVLSVAFARHSP----KIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFS 256 (343)
T ss_dssp HHHHHHHHSCT-TCCSBCCBTTCTTSHHHHHHHHHCT----TCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTT
T ss_pred HHHHHHHhcCc-CCCCeEEEecCccCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccc
Confidence 45566666632 3456999999999999999988754 458999999999999999999988764 6778899876
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEeee
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
.+ +++||+|++++++++.. .....+...+++++.++|+|||.++++.....+ +...+.+. |..++....
T Consensus 257 ~~--~~~fD~Iv~~~~~~~g~-------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~l~~~-f~~~~~~~~ 325 (343)
T 2pjd_A 257 EV--KGRFDMIISNPPFHDGM-------QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLP-YPDVLDET-FGFHEVIAQ 325 (343)
T ss_dssp TC--CSCEEEEEECCCCCSSS-------HHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSS-HHHHHHHH-HSCCEEEEE
T ss_pred cc--cCCeeEEEECCCcccCc-------cCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCC-cHHHHHHh-cCceEEEee
Confidence 43 57899999999987521 011236788999999999999999987544432 22233222 334444444
Q ss_pred eccceecceeeeeecC
Q 022698 262 VTAFMVSSHIVSFRKP 277 (293)
Q Consensus 262 ~~~~~~~~~~~~~~~~ 277 (293)
..+|. ++.+.+.
T Consensus 326 ~~gf~----v~~~~k~ 337 (343)
T 2pjd_A 326 TGRFK----VYRAIMT 337 (343)
T ss_dssp CSSEE----EEEEEC-
T ss_pred CCCEE----EEEEEeC
Confidence 44543 5555543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9.6e-18 Score=142.33 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=92.3
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
.+.+...+....++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++..+++.+++.++++|+.++
T Consensus 66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 139 (241)
T 3gdh_A 66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT------GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL 139 (241)
T ss_dssp HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred HHHHHHHhhhccCCCEEEECccccCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHh
Confidence 3444443332235779999999999999999875 3699999999999999999999998766799999999886
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+ ++++||+|++++++++.. +....+.++.++|+|||.+++
T Consensus 140 ~-~~~~~D~v~~~~~~~~~~------------~~~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 140 A-SFLKADVVFLSPPWGGPD------------YATAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp G-GGCCCSEEEECCCCSSGG------------GGGSSSBCTTTSCSSCHHHHH
T ss_pred c-ccCCCCEEEECCCcCCcc------------hhhhHHHHHHhhcCCcceeHH
Confidence 5 467899999999999876 444456678889999998655
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-15 Score=123.92 Aligned_cols=138 Identities=10% Similarity=0.059 Sum_probs=97.1
Q ss_pred HHHHHHHHhc-CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 101 DMAQRMVGSV-NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 101 ~~~~~l~~~~-~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
.+...++..+ ....++.+|||+|||+|..+..+++..+ ..+|+|+|+|+.|++.+.+.++.. .++.++.+|+
T Consensus 42 ~l~~~~~~~l~~~~~~g~~VLDlGcGtG~~~~~la~~~~----~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~ 114 (210)
T 1nt2_A 42 KLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD----EGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDA 114 (210)
T ss_dssp HHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTT----TSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCT
T ss_pred HHHHHHHhhcccCCCCCCEEEEECCcCCHHHHHHHHHcC----CCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCC
Confidence 3444444433 2345678999999999999999988764 259999999999988777766653 3488888998
Q ss_pred CCC----CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc------CCC-chHH----
Q 022698 180 RSL----PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD------LLH-VPEY---- 244 (293)
Q Consensus 180 ~~~----~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~------~~~-~~~~---- 244 (293)
... ++ .++||+|+++... + . ....++++++++|||||++++.- ... .+++
T Consensus 115 ~~~~~~~~~-~~~fD~V~~~~~~-~-~------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 179 (210)
T 1nt2_A 115 SKPWKYSGI-VEKVDLIYQDIAQ-K-N------------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSV 179 (210)
T ss_dssp TCGGGTTTT-CCCEEEEEECCCS-T-T------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHH
T ss_pred CCchhhccc-ccceeEEEEeccC-h-h------------HHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHH
Confidence 763 33 3789999998311 1 1 44567899999999999998852 222 2333
Q ss_pred HHHHHHcCCcceEEeee
Q 022698 245 VRRLQELKMEDIRVSER 261 (293)
Q Consensus 245 ~~~l~~~gf~~~~~~~~ 261 (293)
.+.++++ |+.++....
T Consensus 180 ~~~l~~~-f~~~~~~~~ 195 (210)
T 1nt2_A 180 LKEMEGD-FKIVKHGSL 195 (210)
T ss_dssp HHHHHTT-SEEEEEEEC
T ss_pred HHHHHhh-cEEeeeecC
Confidence 2337777 988776643
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-16 Score=132.59 Aligned_cols=108 Identities=18% Similarity=0.148 Sum_probs=89.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCC-----
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGD----- 186 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~----- 186 (293)
...++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.+++++.. .++.++++|+.+++...
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~------~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~~~~ 122 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFF------PRVIGLDVSKSALEIAAKENTA----ANISYRLLDGLVPEQAAQIHSE 122 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHS------SCEEEEESCHHHHHHHHHHSCC----TTEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhC------CCEEEEECCHHHHHHHHHhCcc----cCceEEECcccccccccccccc
Confidence 34567899999999999999998773 3899999999999999988732 35999999998854321
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
.+||+|+++.++++++ ..+...+++++.++|||||.+++++..
T Consensus 123 ~~~d~v~~~~~~~~~~----------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 123 IGDANIYMRTGFHHIP----------VEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp HCSCEEEEESSSTTSC----------GGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred cCccEEEEcchhhcCC----------HHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 2489999999999887 236789999999999999998886543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-16 Score=134.47 Aligned_cols=136 Identities=13% Similarity=0.215 Sum_probs=105.6
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEEcCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-GVQEYVTAREGDVRSLP 183 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-~~~~~v~~~~~d~~~~~ 183 (293)
.++..+ ...++.+|||+|||+|.++..+++.+.. +.+++++|+|+.+++.+++++..+ +. +++++..+|+.+ +
T Consensus 101 ~~~~~~-~~~~~~~VLD~G~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~-~ 174 (275)
T 1yb2_A 101 YIIMRC-GLRPGMDILEVGVGSGNMSSYILYALNG---KGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIAD-F 174 (275)
T ss_dssp -----C-CCCTTCEEEEECCTTSHHHHHHHHHHTT---SSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTT-C
T ss_pred HHHHHc-CCCCcCEEEEecCCCCHHHHHHHHHcCC---CCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhc-c
Confidence 444443 3567789999999999999999887421 469999999999999999999887 64 569999999987 5
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHcCCcceEEeee
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~gf~~~~~~~~ 261 (293)
+++++||+|+++. + ++..+++++.++|+|||++++..... ..+..+.+++.||..+++.+.
T Consensus 175 ~~~~~fD~Vi~~~-----~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 237 (275)
T 1yb2_A 175 ISDQMYDAVIADI-----P------------DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVEL 237 (275)
T ss_dssp CCSCCEEEEEECC-----S------------CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEE
T ss_pred CcCCCccEEEEcC-----c------------CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEEE
Confidence 5567899999953 2 44578999999999999999976543 345667788899998888764
Q ss_pred ec
Q 022698 262 VT 263 (293)
Q Consensus 262 ~~ 263 (293)
..
T Consensus 238 ~~ 239 (275)
T 1yb2_A 238 MK 239 (275)
T ss_dssp EE
T ss_pred ec
Confidence 33
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-15 Score=126.67 Aligned_cols=108 Identities=20% Similarity=0.214 Sum_probs=89.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-CC--CCCccc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-PF--GDNYFD 190 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~--~~~~fD 190 (293)
.++.+|||+|||+|..+..+++.++. +.+|+++|+|+.+++.|+++++..++.++++++.+|+.+. +. ..++||
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD 138 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPA---DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFD 138 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCT---TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCS
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeE
Confidence 35679999999999999999987652 3699999999999999999999999877899999998762 22 134899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
+|++..... +...+++++.++|||||++++.+..
T Consensus 139 ~V~~d~~~~---------------~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 139 LIFIDADKP---------------NNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp EEEECSCGG---------------GHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred EEEECCchH---------------HHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 999976422 4457899999999999999986654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=126.16 Aligned_cols=113 Identities=15% Similarity=0.099 Sum_probs=84.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++. + ..+++++|+|+.+++.+++++. +++++++|+.+++ ++||+|+
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~----~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~---~~~D~v~ 115 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-G----AESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWI 115 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-T----BSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEE
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-C----CCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC---CCeeEEE
Confidence 45679999999999999988765 2 2489999999999999999875 3789999998864 6899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcC
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELK 252 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~g 252 (293)
+++|+++... .....+++++.+.+ |+.+++.+........+.+.+.|
T Consensus 116 ~~~p~~~~~~----------~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 116 MNPPFGSVVK----------HSDRAFIDKAFETS--MWIYSIGNAKARDFLRREFSARG 162 (200)
T ss_dssp ECCCC-----------------CHHHHHHHHHHE--EEEEEEEEGGGHHHHHHHHHHHE
T ss_pred ECCCchhccC----------chhHHHHHHHHHhc--CcEEEEEcCchHHHHHHHHHHCC
Confidence 9999998761 12346888888888 55444454444455677778888
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-15 Score=133.55 Aligned_cols=135 Identities=13% Similarity=0.192 Sum_probs=106.5
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+++.+..+.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++ ++++++.+|+.+ ++
T Consensus 193 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~ 259 (368)
T 3reo_A 193 KILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYP----SINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GV 259 (368)
T ss_dssp HHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC
T ss_pred HHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCC----CCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CC
Confidence 3444443345678999999999999999999877 468999999 8877665432 469999999987 55
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------------------
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------- 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------- 239 (293)
+.+ |+|++..++|+++ .++...++++++++|+|||++++++..
T Consensus 260 p~~--D~v~~~~vlh~~~----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 327 (368)
T 3reo_A 260 PKG--DAIFIKWICHDWS----------DEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYN 327 (368)
T ss_dssp CCC--SEEEEESCGGGBC----------HHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred CCC--CEEEEechhhcCC----------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhc
Confidence 544 9999999999887 335668999999999999999986532
Q ss_pred ------CchHHHHHHHHcCCcceEEeeeecc
Q 022698 240 ------HVPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 240 ------~~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
..+++.++++++||+.+++......
T Consensus 328 ~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~ 358 (368)
T 3reo_A 328 PGGKERTEKEFQALAMASGFRGFKVASCAFN 358 (368)
T ss_dssp SBCCCCCHHHHHHHHHHTTCCEEEEEEEETT
T ss_pred CCCccCCHHHHHHHHHHCCCeeeEEEEeCCC
Confidence 1246889999999999988765544
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=130.34 Aligned_cols=112 Identities=14% Similarity=0.155 Sum_probs=85.7
Q ss_pred CCCeEEEEcCCCCh----HHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-----------------------cC
Q 022698 115 TVKTALDIGCGRGI----LLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-----------------------EG 167 (293)
Q Consensus 115 ~~~~vLDiG~G~G~----~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~-----------------------~~ 167 (293)
+..+|||+|||||. ++..+++.++..+.+.+|+|+|+|+.|++.|+++.-. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35699999999999 4444555544221136999999999999999987410 00
Q ss_pred -------CCCceEEEEcCCCCCCCC-CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 168 -------VQEYVTAREGDVRSLPFG-DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 168 -------~~~~v~~~~~d~~~~~~~-~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+.+++.|.+.|+.+.+++ .++||+|+|.+++++++ .+....+++++++.|+|||+|++-
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~----------~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD----------KTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC----------HHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCC----------HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 013599999999886554 57899999999999887 335589999999999999999883
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-16 Score=129.38 Aligned_cols=119 Identities=10% Similarity=0.047 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
..+.+.+++.+....++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++|++.+++ ++++++++|+
T Consensus 39 ~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~-----~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~ 112 (202)
T 2fpo_A 39 DRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY-----AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNA 112 (202)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT-----CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCH
T ss_pred HHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcC-----CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCH
Confidence 34444455444321246799999999999998877652 24899999999999999999999887 5699999998
Q ss_pred CC-CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHH--cccCCcEEEEEc
Q 022698 180 RS-LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVR--VLKPGGVGVVWD 237 (293)
Q Consensus 180 ~~-~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~ 237 (293)
.+ ++...++||+|+++++|+ .. ....+++.+.+ +|+|||++++..
T Consensus 113 ~~~~~~~~~~fD~V~~~~p~~-~~------------~~~~~l~~l~~~~~L~pgG~l~i~~ 160 (202)
T 2fpo_A 113 MSFLAQKGTPHNIVFVDPPFR-RG------------LLEETINLLEDNGWLADEALIYVES 160 (202)
T ss_dssp HHHHSSCCCCEEEEEECCSSS-TT------------THHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred HHHHhhcCCCCCEEEECCCCC-CC------------cHHHHHHHHHhcCccCCCcEEEEEE
Confidence 76 344457899999999865 23 44566777755 699999998854
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=130.02 Aligned_cols=116 Identities=14% Similarity=0.037 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
...+.+++.+. ..++.+|||+|||+|.++..+++. +.+|+++|+|+.|++.+++++..... ...+...+..
T Consensus 32 ~~~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~------g~~V~gvD~S~~ml~~Ar~~~~~~~v--~~~~~~~~~~ 102 (261)
T 3iv6_A 32 SDRENDIFLEN-IVPGSTVAVIGASTRFLIEKALER------GASVTVFDFSQRMCDDLAEALADRCV--TIDLLDITAE 102 (261)
T ss_dssp CHHHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTSSSCC--EEEECCTTSC
T ss_pred HHHHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHhccc--eeeeeecccc
Confidence 35566666654 567789999999999999988875 45999999999999999999765421 1222222220
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
.....+++||+|+++.+++++. .++...+++++.++| |||++++.
T Consensus 103 ~~~~~~~~fD~Vv~~~~l~~~~----------~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 103 IPKELAGHFDFVLNDRLINRFT----------TEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp CCGGGTTCCSEEEEESCGGGSC----------HHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred cccccCCCccEEEEhhhhHhCC----------HHHHHHHHHHHHHhC-cCcEEEEE
Confidence 0111246899999999999876 336778999999999 99999985
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-16 Score=128.11 Aligned_cols=132 Identities=22% Similarity=0.312 Sum_probs=101.3
Q ss_pred HHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC
Q 022698 106 MVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG 185 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 185 (293)
+++.+....++.+|||+|||+|..+..++ .+++++|+|+. ++.+.++|+.+++++
T Consensus 58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~---------~~v~~~D~s~~----------------~~~~~~~d~~~~~~~ 112 (215)
T 2zfu_A 58 IARDLRQRPASLVVADFGCGDCRLASSIR---------NPVHCFDLASL----------------DPRVTVCDMAQVPLE 112 (215)
T ss_dssp HHHHHHTSCTTSCEEEETCTTCHHHHHCC---------SCEEEEESSCS----------------STTEEESCTTSCSCC
T ss_pred HHHHHhccCCCCeEEEECCcCCHHHHHhh---------ccEEEEeCCCC----------------CceEEEeccccCCCC
Confidence 33333333566799999999999886652 38999999987 256889999988777
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----CchHHHHHHHHcCCcceEEeee
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----HVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
+++||+|+++.++++ . ++..+++++.++|+|||.+++.+.. ...++.+.++++||+.++....
T Consensus 113 ~~~fD~v~~~~~l~~-~------------~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 179 (215)
T 2zfu_A 113 DESVDVAVFCLSLMG-T------------NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLT 179 (215)
T ss_dssp TTCEEEEEEESCCCS-S------------CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECC
T ss_pred CCCEeEEEEehhccc-c------------CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecC
Confidence 889999999998864 5 7789999999999999999997543 4568999999999998775432
Q ss_pred eccceecceeeeeecCCC
Q 022698 262 VTAFMVSSHIVSFRKPSQ 279 (293)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~ 279 (293)
...+ .++.++|...
T Consensus 180 ~~~~----~~~~~~k~~~ 193 (215)
T 2zfu_A 180 NSHF----FLFDFQKTGP 193 (215)
T ss_dssp STTC----EEEEEEECSS
T ss_pred CCeE----EEEEEEecCc
Confidence 2222 4666776543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=125.84 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=89.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CC---CCc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FG---DNY 188 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~---~~~ 188 (293)
.++.+|||+|||+|..+..+++.++. +.+++++|+++.+++.+++++...++.++++++.+|+.+.. +. .++
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 133 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSS---GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEP 133 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCS---SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCC
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence 35679999999999999999987652 36999999999999999999999988778999999986531 11 157
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
||+|++..+.. ....+++++.++|+|||++++.+..
T Consensus 134 fD~v~~d~~~~---------------~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 134 FDFIFIDADKQ---------------NNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp CSEEEECSCGG---------------GHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred cCEEEEcCCcH---------------HHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 99999986532 4457899999999999999886554
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-16 Score=125.78 Aligned_cols=115 Identities=12% Similarity=0.072 Sum_probs=93.3
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
++...+...+ .++.+|||+|||+|.++..++...| .++|+++|+|+.|++.+++++..+|...++++ .|..
T Consensus 38 ~fY~~~~~~l---~~~~~VLDlGCG~GplAl~l~~~~p----~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~ 108 (200)
T 3fzg_A 38 DFYTYVFGNI---KHVSSILDFGCGFNPLALYQWNENE----KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKE 108 (200)
T ss_dssp HHHHHHHHHS---CCCSEEEEETCTTHHHHHHHHCSSC----CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCH
T ss_pred HHHHHHHhhc---CCCCeEEEecCCCCHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccc
Confidence 3444555555 3467999999999999998887655 56999999999999999999999998656766 5655
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.. .+.++||+|+++..+|+++ +....+.++.+.|+|||.++-.+
T Consensus 109 ~~-~~~~~~DvVLa~k~LHlL~------------~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 109 SD-VYKGTYDVVFLLKMLPVLK------------QQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HH-HTTSEEEEEEEETCHHHHH------------HTTCCHHHHHHTCEEEEEEEEEE
T ss_pred cc-CCCCCcChhhHhhHHHhhh------------hhHHHHHHHHHHhCCCCEEEEeC
Confidence 43 3467899999999999987 66677779999999999988755
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.1e-15 Score=131.99 Aligned_cols=135 Identities=15% Similarity=0.182 Sum_probs=107.1
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
..+++.+....+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++ ++++++.+|+.+ +
T Consensus 190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~ 256 (364)
T 3p9c_A 190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYP----TIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-E 256 (364)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-C
T ss_pred HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCC----CCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-C
Confidence 34555554356678999999999999999999877 468999999 8877655431 569999999987 6
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC------------------------
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------ 239 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------ 239 (293)
++.+ |+|++..++|+++ .++...+++++++.|+|||++++++..
T Consensus 257 ~p~~--D~v~~~~vlh~~~----------d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~ 324 (364)
T 3p9c_A 257 VPSG--DTILMKWILHDWS----------DQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAH 324 (364)
T ss_dssp CCCC--SEEEEESCGGGSC----------HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred CCCC--CEEEehHHhccCC----------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhc
Confidence 6554 9999999999887 336678999999999999999986532
Q ss_pred -------CchHHHHHHHHcCCcceEEeeeec
Q 022698 240 -------HVPEYVRRLQELKMEDIRVSERVT 263 (293)
Q Consensus 240 -------~~~~~~~~l~~~gf~~~~~~~~~~ 263 (293)
..+++.++++++||+.+++.....
T Consensus 325 ~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~ 355 (364)
T 3p9c_A 325 NPGGRERYEREFQALARGAGFTGVKSTYIYA 355 (364)
T ss_dssp CSSCCCCBHHHHHHHHHHTTCCEEEEEEEET
T ss_pred ccCCccCCHHHHHHHHHHCCCceEEEEEcCC
Confidence 124688999999999998876543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-15 Score=123.90 Aligned_cols=115 Identities=21% Similarity=0.199 Sum_probs=95.9
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.....+++.+. ..++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...+.. ++++..+
T Consensus 61 ~~~~~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~ 132 (210)
T 3lbf_A 61 SQPYMVARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL------VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHG 132 (210)
T ss_dssp CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEES
T ss_pred CCHHHHHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEEC
Confidence 34566677777664 467889999999999999998876 359999999999999999999988764 6999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
|+.+.....++||+|+++.++++++ + ++.+.|+|||++++...
T Consensus 133 d~~~~~~~~~~~D~i~~~~~~~~~~------------~------~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 133 DGWQGWQARAPFDAIIVTAAPPEIP------------T------ALMTQLDEGGILVLPVG 175 (210)
T ss_dssp CGGGCCGGGCCEEEEEESSBCSSCC------------T------HHHHTEEEEEEEEEEEC
T ss_pred CcccCCccCCCccEEEEccchhhhh------------H------HHHHhcccCcEEEEEEc
Confidence 9988655567899999998888876 2 47889999999988543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-14 Score=129.03 Aligned_cols=132 Identities=17% Similarity=0.093 Sum_probs=103.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-CCC-CCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-LPF-GDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~~fD~I 192 (293)
++.+|||+| |+|.++..++...+ ..+|+++|+|+.+++.|++|++.+++. +++++++|+.+ ++. .+++||+|
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~----~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~V 245 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGL----PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTF 245 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTC----CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEE
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEE
Confidence 567999999 99999999876533 359999999999999999999998875 79999999988 553 34689999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEE-EEEcCC---Cc---hHHHHHHH-HcCCcceEEeeeecc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVG-VVWDLL---HV---PEYVRRLQ-ELKMEDIRVSERVTA 264 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l-~~~~~~---~~---~~~~~~l~-~~gf~~~~~~~~~~~ 264 (293)
++++|++.. ....+++++.++|+|||++ ++.... .. ..+.+.+. +.||....+..++..
T Consensus 246 i~~~p~~~~-------------~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 312 (373)
T 2qm3_A 246 ITDPPETLE-------------AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITDIIRNFNE 312 (373)
T ss_dssp EECCCSSHH-------------HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEEEEEEEE
T ss_pred EECCCCchH-------------HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhhhhhhhh
Confidence 999987653 2378999999999999944 443222 22 35556677 789987777666554
Q ss_pred c
Q 022698 265 F 265 (293)
Q Consensus 265 ~ 265 (293)
+
T Consensus 313 ~ 313 (373)
T 2qm3_A 313 Y 313 (373)
T ss_dssp B
T ss_pred h
Confidence 4
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=133.35 Aligned_cols=143 Identities=19% Similarity=0.123 Sum_probs=104.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
...++.+|||+|||+|..+..+++.++. ..+|+++|+|+.+++.+++|++.+++. ++.+++.|+.+++...++||+
T Consensus 115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~---~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 115 DPKPGEIVADMAAAPGGKTSYLAQLMRN---DGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTT---CSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccCCE
Confidence 3567789999999999999999987653 359999999999999999999998874 599999999886544568999
Q ss_pred EEecchhhhhc---cccCc-------chhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC----chH-HHHHHHHcCCcce
Q 022698 192 VVSAAFFHTVG---KEYGH-------RTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH----VPE-YVRRLQELKMEDI 256 (293)
Q Consensus 192 Iv~~~~~~~~~---~~~~~-------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~-~~~~l~~~gf~~~ 256 (293)
|++++|+.... ..+.. ...........+++++.++|||||+++++++.. .++ +...+++.||+.+
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~~ 270 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELL 270 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEE
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEEe
Confidence 99987753221 11100 000011223689999999999999999976643 223 4556677887665
Q ss_pred EE
Q 022698 257 RV 258 (293)
Q Consensus 257 ~~ 258 (293)
.+
T Consensus 271 ~~ 272 (315)
T 1ixk_A 271 PL 272 (315)
T ss_dssp CC
T ss_pred cC
Confidence 44
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.5e-15 Score=128.04 Aligned_cols=141 Identities=19% Similarity=0.187 Sum_probs=110.0
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-C-CCCceEEEE
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-G-VQEYVTARE 176 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-~-~~~~v~~~~ 176 (293)
.+.....++..+. ..++.+|||+|||+|.++..+++.+. ++.+++++|+|+.+++.+++++... + +.+++.+..
T Consensus 84 ~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~ 159 (280)
T 1i9g_A 84 YPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVG---PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV 159 (280)
T ss_dssp CHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHC---TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC
T ss_pred cHHHHHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 3445566666654 56778999999999999999988652 1469999999999999999998876 4 446799999
Q ss_pred cCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHH-cCC
Q 022698 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQE-LKM 253 (293)
Q Consensus 177 ~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~-~gf 253 (293)
.|+.+.++++++||+|+++.+ ++..+++++.++|+|||.+++..... ..+..+.+++ .+|
T Consensus 160 ~d~~~~~~~~~~~D~v~~~~~-----------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f 222 (280)
T 1i9g_A 160 SDLADSELPDGSVDRAVLDML-----------------APWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCW 222 (280)
T ss_dssp SCGGGCCCCTTCEEEEEEESS-----------------CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSB
T ss_pred CchHhcCCCCCceeEEEECCc-----------------CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCc
Confidence 999887666778999999533 33478899999999999999876543 3355566666 789
Q ss_pred cceEEee
Q 022698 254 EDIRVSE 260 (293)
Q Consensus 254 ~~~~~~~ 260 (293)
..+++.+
T Consensus 223 ~~~~~~~ 229 (280)
T 1i9g_A 223 TEPRAWE 229 (280)
T ss_dssp CCCEEEC
T ss_pred CCcEEEE
Confidence 8777654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-16 Score=142.68 Aligned_cols=137 Identities=17% Similarity=0.188 Sum_probs=104.2
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCce-EEEEcCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYV-TAREGDV 179 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v-~~~~~d~ 179 (293)
.+.+.+++.+. ..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++ +..... .+...+.
T Consensus 94 ~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~------g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~ 162 (416)
T 4e2x_A 94 MLARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA------GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATA 162 (416)
T ss_dssp HHHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT------TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHH
T ss_pred HHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc------CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhH
Confidence 34555555553 456789999999999999888765 35999999999999988766 322111 1222333
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC---------------------
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL--------------------- 238 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--------------------- 238 (293)
..+++++++||+|+++.+++|++ ++..++++++++|||||++++...
T Consensus 163 ~~l~~~~~~fD~I~~~~vl~h~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 230 (416)
T 4e2x_A 163 DDVRRTEGPANVIYAANTLCHIP------------YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFL 230 (416)
T ss_dssp HHHHHHHCCEEEEEEESCGGGCT------------THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEE
T ss_pred hhcccCCCCEEEEEECChHHhcC------------CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhc
Confidence 33445568999999999999998 899999999999999999998432
Q ss_pred CCchHHHHHHHHcCCcceEEee
Q 022698 239 LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 239 ~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
....++.++++++||+.+++..
T Consensus 231 ~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 231 FSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCEEEEEEE
Confidence 1235799999999999888765
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=126.16 Aligned_cols=128 Identities=21% Similarity=0.118 Sum_probs=95.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH----HhcCCCCceEEEEcCCCCCCCCCCcc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA----KMEGVQEYVTAREGDVRSLPFGDNYF 189 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~----~~~~~~~~v~~~~~d~~~~~~~~~~f 189 (293)
.++.+|||+|||+|.++..+++..| +.+|+|+|+|+.|++.+.+++ ...+. +++.++++|+.++++.+++
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p----~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~- 99 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNP----SRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV- 99 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCT----TEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE-
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC-
Confidence 5677999999999999999998765 579999999999888644433 23443 4699999999998876666
Q ss_pred cEEEecchhh-----hhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------C----chHH
Q 022698 190 DVVVSAAFFH-----TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----------------H----VPEY 244 (293)
Q Consensus 190 D~Iv~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------~----~~~~ 244 (293)
|.|+...++. +++ ++..+++++.++|||||.+++.... . ...+
T Consensus 100 d~v~~~~~~~~~~~~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (218)
T 3mq2_A 100 GELHVLMPWGSLLRGVLG------------SSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWL 167 (218)
T ss_dssp EEEEEESCCHHHHHHHHT------------SSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHH
T ss_pred CEEEEEccchhhhhhhhc------------cHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHH
Confidence 7776443221 333 5578999999999999999883210 0 1236
Q ss_pred HHHHHHcCCcceEEe
Q 022698 245 VRRLQELKMEDIRVS 259 (293)
Q Consensus 245 ~~~l~~~gf~~~~~~ 259 (293)
...+.++||+..++.
T Consensus 168 ~~~l~~aGf~i~~~~ 182 (218)
T 3mq2_A 168 APRYAEAGWKLADCR 182 (218)
T ss_dssp HHHHHHTTEEEEEEE
T ss_pred HHHHHHcCCCceeee
Confidence 678899999877764
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-15 Score=132.36 Aligned_cols=148 Identities=11% Similarity=0.037 Sum_probs=103.6
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEEc
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE-YVTAREG 177 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~-~v~~~~~ 177 (293)
+....+++.+.+....++.+|||+|||+|.+++.+++. +++|+++|+|+.+++.+++|++.+++.+ +++++++
T Consensus 137 q~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~------ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~ 210 (332)
T 2igt_A 137 QIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICE 210 (332)
T ss_dssp GHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECS
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 34444445554421235679999999999999998874 3499999999999999999999998765 5999999
Q ss_pred CCCCCCC----CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-C---CchHHHHHHH
Q 022698 178 DVRSLPF----GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-L---HVPEYVRRLQ 249 (293)
Q Consensus 178 d~~~~~~----~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~---~~~~~~~~l~ 249 (293)
|+.++.. ..++||+|++++|+....... ..+...++...+++++.++|+|||.+++... . ....+.+.++
T Consensus 211 D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~--~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~ 288 (332)
T 2igt_A 211 DAMKFIQREERRGSTYDIILTDPPKFGRGTHG--EVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMR 288 (332)
T ss_dssp CHHHHHHHHHHHTCCBSEEEECCCSEEECTTC--CEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCceEEEECCccccCCchH--HHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHH
Confidence 9877431 146899999999864322110 0111233677899999999999999776332 2 2234555555
Q ss_pred ----HcCCc
Q 022698 250 ----ELKME 254 (293)
Q Consensus 250 ----~~gf~ 254 (293)
+.|+.
T Consensus 289 ~a~~~~g~~ 297 (332)
T 2igt_A 289 ETMRGAGGV 297 (332)
T ss_dssp HHTTTSCSE
T ss_pred HHHHHcCCe
Confidence 45654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=138.86 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=92.5
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
.+.+++.+. ..++.+|||||||+|.++..+++. + ..+|+|+|+|+ +++.|+++++.+++.++++++.+|+.++
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~~-~----~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~ 219 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-G----ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV 219 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHHT-T----CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHHc-C----CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC
Confidence 344555443 345679999999999999888763 2 35999999998 9999999999999878899999999987
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+++ ++||+|+++++.++... ++....+..+.++|||||.+++
T Consensus 220 ~~~-~~fD~Ivs~~~~~~~~~----------e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 220 SLP-EQVDIIISEPMGYMLFN----------ERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp CCS-SCEEEEECCCCHHHHTC----------HHHHHHHHHGGGGEEEEEEEES
T ss_pred ccC-CCeEEEEEeCchHhcCc----------HHHHHHHHHHHHhcCCCCEEEE
Confidence 654 58999999988666541 2556677888999999999985
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-15 Score=131.61 Aligned_cols=104 Identities=22% Similarity=0.308 Sum_probs=88.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.+|||+|||+|.++..+++. + ..+|+|+|+|+ +++.|+++++.+++.+++.++.+|+.++++++++||+|
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g----~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 135 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-G----AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVI 135 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEE
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-C----CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEE
Confidence 456789999999999999888765 2 25999999997 99999999999988778999999999987777899999
Q ss_pred Eecch---hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 193 VSAAF---FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 193 v~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
+++.. +.+.. ++..+++++.++|||||.++
T Consensus 136 vs~~~~~~l~~~~------------~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 136 ISEWMGYFLLFES------------MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EECCCBTTBTTTC------------HHHHHHHHHHHHEEEEEEEE
T ss_pred EEcCchhhccCHH------------HHHHHHHHHHhhcCCCcEEE
Confidence 99873 22333 67789999999999999987
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=133.43 Aligned_cols=133 Identities=19% Similarity=0.169 Sum_probs=98.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh---cCCCCceEEEEcCCCCCCC--CCCc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM---EGVQEYVTAREGDVRSLPF--GDNY 188 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~---~~~~~~v~~~~~d~~~~~~--~~~~ 188 (293)
.++.+|||||||+|..+..+++..+ ..+++++|+|+.+++.+++++.. ....++++++.+|+.+... .+++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 169 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGT----VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNT 169 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTC
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCC----CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCc
Confidence 4567999999999999998886533 46999999999999999998742 1223579999999877542 3678
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHH--HHHHHHHHHcccCCcEEEEEcCC------CchHHHHHHHHcCCcceEEee
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAER--MRVLGEMVRVLKPGGVGVVWDLL------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
||+|+++.+....+ .... .++++++.++|+|||++++.... ...++.+.+++.||..++...
T Consensus 170 fDvIi~d~~~~~~~----------~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~ 239 (304)
T 3bwc_A 170 YDVVIIDTTDPAGP----------ASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYAL 239 (304)
T ss_dssp EEEEEEECC-------------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred eeEEEECCCCcccc----------chhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEE
Confidence 99999987654432 0011 57899999999999999985432 124577888899999887754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=123.87 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+.....++..+. ..++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....++.+++.+...|+
T Consensus 77 ~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 149 (248)
T 2yvl_A 77 PKDSFYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV------AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDF 149 (248)
T ss_dssp HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCT
T ss_pred chhHHHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh------CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcCh
Confidence 334445555543 467789999999999999999877 2599999999999999999998888767799999999
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceE
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIR 257 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~ 257 (293)
.+...++++||+|+++.+ ++..+++++.++|+|||.+++.... +..+..+.+.+. |..++
T Consensus 150 ~~~~~~~~~~D~v~~~~~-----------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~~~~ 211 (248)
T 2yvl_A 150 KDAEVPEGIFHAAFVDVR-----------------EPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FGNLE 211 (248)
T ss_dssp TTSCCCTTCBSEEEECSS-----------------CGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EEEEE
T ss_pred hhcccCCCcccEEEECCc-----------------CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CCcce
Confidence 885325678999998643 3346788899999999999987653 334566666666 77776
Q ss_pred Eeeee
Q 022698 258 VSERV 262 (293)
Q Consensus 258 ~~~~~ 262 (293)
..+.+
T Consensus 212 ~~~~~ 216 (248)
T 2yvl_A 212 VVEIL 216 (248)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 66543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=134.62 Aligned_cols=107 Identities=23% Similarity=0.294 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++. + ..+|+|+|+|+ +++.|+++++.+++.++++++++|+.++++++++||+|+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g----~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 138 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-G----ARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIII 138 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-T----CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred CCCCEEEEEeccchHHHHHHHHC-C----CCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEE
Confidence 45789999999999999988876 2 35999999995 999999999999988889999999999887778999999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
++.+.+.+..+ ..+..+++++.++|||||+++.
T Consensus 139 s~~~~~~l~~~---------~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 139 SEWMGYCLFYE---------SMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp ECCCBBTBTBT---------CCHHHHHHHHHHHEEEEEEEES
T ss_pred EccccccccCc---------hhHHHHHHHHHHhCCCCCEEcc
Confidence 98764443211 1667899999999999999874
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=128.21 Aligned_cols=118 Identities=11% Similarity=0.093 Sum_probs=93.3
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVR 180 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~ 180 (293)
+...++.... ..+..+|||+|||+|..+..+++.++. +++|+++|+|+.+++.|+++++..++. ++++++.+|+.
T Consensus 44 ~l~~l~~~~~-~~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~ 119 (221)
T 3dr5_A 44 LLTTLAATTN-GNGSTGAIAITPAAGLVGLYILNGLAD---NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPL 119 (221)
T ss_dssp HHHHHHHHSC-CTTCCEEEEESTTHHHHHHHHHHHSCT---TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHH
T ss_pred HHHHHHHhhC-CCCCCCEEEEcCCchHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHH
Confidence 4444444332 233459999999999999999987653 469999999999999999999999987 78999999987
Q ss_pred CCC--CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 181 SLP--FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 181 ~~~--~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+.. +.+++||+|++..... +...+++++.++|+|||++++-+.
T Consensus 120 ~~l~~~~~~~fD~V~~d~~~~---------------~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 120 DVMSRLANDSYQLVFGQVSPM---------------DLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp HHGGGSCTTCEEEEEECCCTT---------------THHHHHHHHHHHEEEEEEEEETTT
T ss_pred HHHHHhcCCCcCeEEEcCcHH---------------HHHHHHHHHHHHcCCCcEEEEeCC
Confidence 642 3357899999976432 445789999999999999998443
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=126.98 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=94.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC-HHHHHHH---HHHHHhcCCCCceEEEEcCCCCCCCC-CCc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK-KRTTLST---LRTAKMEGVQEYVTAREGDVRSLPFG-DNY 188 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis-~~~l~~a---~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 188 (293)
.++.+|||||||+|.++..+++..+ +.+|+|+|+| +.+++.| ++++...++ .++.+.++|+.+++.. .+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~----~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~~~~~d~ 97 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQ----NTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLPFELKNI 97 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCT----TEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCCGGGTTC
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhhhhccCe
Confidence 4567999999999999998886544 5799999999 6666666 777777776 4599999999987531 255
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-----------------CCc-----hHHHH
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-----------------LHV-----PEYVR 246 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-----------------~~~-----~~~~~ 246 (293)
+|.|.++.++.... .....+...++++++++|||||.++++.. ... +++.+
T Consensus 98 v~~i~~~~~~~~~~-------~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 170 (225)
T 3p2e_A 98 ADSISILFPWGTLL-------EYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKA 170 (225)
T ss_dssp EEEEEEESCCHHHH-------HHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHH
T ss_pred EEEEEEeCCCcHHh-------hhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHH
Confidence 67777765543211 00001235689999999999999988211 001 13777
Q ss_pred HHHHcCCcceEEe
Q 022698 247 RLQELKMEDIRVS 259 (293)
Q Consensus 247 ~l~~~gf~~~~~~ 259 (293)
.++++||+.....
T Consensus 171 ~l~~aGf~v~~~~ 183 (225)
T 3p2e_A 171 ELSNSGFRIDDVK 183 (225)
T ss_dssp HHHHHTCEEEEEE
T ss_pred HHHHcCCCeeeee
Confidence 8899999977665
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-15 Score=127.67 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=88.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-CCCCcccE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-FGDNYFDV 191 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~ 191 (293)
.++.+|||+|||+|..+..+++..+ +.+|+++|+|+.+++.|+++++..++.++++++.+|+.+. + ..+++||+
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~ 145 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISD----DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDM 145 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCT----TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccE
Confidence 3567999999999999999987544 4699999999999999999999998877899999999774 2 22578999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
|+++.... +...+++.+.++|+|||++++-+.
T Consensus 146 V~~~~~~~---------------~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 146 IFIDAAKA---------------QSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp EEEETTSS---------------SHHHHHHHHGGGEEEEEEEEEECT
T ss_pred EEEcCcHH---------------HHHHHHHHHHHhcCCCeEEEEeeC
Confidence 99875432 445789999999999999988443
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=125.94 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=92.3
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCC---ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGR---GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~---G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
....+++.+....+..+|||||||+ |..+..+.+..+ +.+|+++|+|+.|++.+++++... ++++++++|
T Consensus 64 ~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p----~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D 136 (274)
T 2qe6_A 64 VLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNP----DARVVYVDIDPMVLTHGRALLAKD---PNTAVFTAD 136 (274)
T ss_dssp HHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCT----TCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECC
T ss_pred HHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCC----CCEEEEEECChHHHHHHHHhcCCC---CCeEEEEee
Confidence 3344444443223456999999999 988766655544 469999999999999999987532 469999999
Q ss_pred CCCCC-----------CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 179 VRSLP-----------FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 179 ~~~~~-----------~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
+.+.+ ++..+||+|+++.++|++++ +++..++++++++|+|||.|++.+..
T Consensus 137 ~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d----------~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 137 VRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSP----------DVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp TTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCT----------TTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred CCCchhhhccchhhccCCCCCCEEEEEechhhhCCc----------HHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 97631 22247999999999999981 14789999999999999999986644
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-15 Score=126.01 Aligned_cols=133 Identities=18% Similarity=0.206 Sum_probs=92.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh------cCCCCceEEEEcCCCC-CC--C
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM------EGVQEYVTAREGDVRS-LP--F 184 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~------~~~~~~v~~~~~d~~~-~~--~ 184 (293)
.++.+|||||||+|.++..+++..+ +..++|+|+|+.|++.|+++++. .+. .++.++++|+.+ ++ +
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p----~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~ 119 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFP----DTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFF 119 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGST----TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCC----CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhC
Confidence 3456899999999999999987765 46999999999999999988754 233 569999999987 55 5
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHcC-Ccc
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELK-MED 255 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~g-f~~ 255 (293)
++++||.|+++.+-.+.... +.. .......+++++.++|||||.|++..... .....+.+.+.| |..
T Consensus 120 ~~~~~D~v~~~~~dp~~k~~-h~k---rr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~ 189 (235)
T 3ckk_A 120 YKGQLTKMFFLFPDPHFKRT-KHK---WRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFER 189 (235)
T ss_dssp CTTCEEEEEEESCC---------------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred CCcCeeEEEEeCCCchhhhh-hhh---hhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 67899999986443221100 000 00001368999999999999998864322 234455566665 443
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=119.55 Aligned_cols=124 Identities=15% Similarity=0.023 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.+++++..++. ++.++++|+.+++ ++||+|+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---~~~D~v~ 117 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-----AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVI 117 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEE
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC---CCCCEEE
Confidence 456799999999999999887651 24899999999999999999988876 5999999998864 4899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE--cCCCchHHHHHHHHcCCcceEEe
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW--DLLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
+|+|++.... .....+++++.+.+ ||.+++. .....+...+.+.+.||+...+.
T Consensus 118 ~~~p~~~~~~----------~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 173 (207)
T 1wy7_A 118 MNPPFGSQRK----------HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHRL 173 (207)
T ss_dssp ECCCCSSSST----------TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EcCCCccccC----------CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEEE
Confidence 9999887641 12346788888888 5544333 22223345667788998755443
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-14 Score=126.24 Aligned_cols=136 Identities=17% Similarity=0.097 Sum_probs=101.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhc-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKT-GSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~-~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
.++.+|||+|||+|.++..+++.++.. +...+++|+|+++.+++.|+.|+...+. ++.+.++|.... ...++||+|
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~-~~~~~fD~I 205 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLAN-LLVDPVDVV 205 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSC-CCCCCEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCc-cccCCccEE
Confidence 456799999999999999999887631 1125899999999999999999988876 488999998763 345789999
Q ss_pred Eecchhhhhcccc-------C-cchhhhHHHHHHHHHHHHHcccCCcEEEEEc------CCCchHHHHHHHHcCCc
Q 022698 193 VSAAFFHTVGKEY-------G-HRTVEAAAERMRVLGEMVRVLKPGGVGVVWD------LLHVPEYVRRLQELKME 254 (293)
Q Consensus 193 v~~~~~~~~~~~~-------~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~------~~~~~~~~~~l~~~gf~ 254 (293)
++|||+.+.+.+. + ..+.. .....+++.+.+.|+|||+++++. ......+.+.+.+.|+.
T Consensus 206 i~NPPfg~~~~~~~~~~~~~~~~~g~~--~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~ 279 (344)
T 2f8l_A 206 ISDLPVGYYPDDENAKTFELCREEGHS--FAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHI 279 (344)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCE--EHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEE
T ss_pred EECCCCCCcCchhhhhhccccCCCCcc--hHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeE
Confidence 9999986553110 0 00000 012368999999999999988854 34456788888888764
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-15 Score=129.46 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=82.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-----ceEEEEcCCCC------C-
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE-----YVTAREGDVRS------L- 182 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~-----~v~~~~~d~~~------~- 182 (293)
++.+|||||||+|..+..++... ..+|+|+|+|+.|++.|++++...+... ++.|.+.|+.. +
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-----~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~ 122 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-----IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVR 122 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHH
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-----CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhh
Confidence 46799999999998766555431 3599999999999999999887655321 26788888732 2
Q ss_pred -CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 183 -PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 183 -~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
++++++||+|+|..++|+.-.. .+...++++++++|||||.+++...
T Consensus 123 ~~~~~~~FD~V~~~~~lhy~~~~---------~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 123 EVFYFGKFNIIDWQFAIHYSFHP---------RHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp TTCCSSCEEEEEEESCGGGTCST---------TTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccCCCeeEEEECchHHHhCCH---------HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2346799999999888765210 1446899999999999999988543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-15 Score=125.91 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++.. . .+.+.|+.++++++++||+|++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~~~~~~fD~v~~ 120 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLPFPSGAFEAVLA 120 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHc------CCeEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCCCCCCCEEEEEE
Confidence 5679999999999999888765 3599999999999999988754 1 2788999988877889999999
Q ss_pred cchhhhh-ccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 195 AAFFHTV-GKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 195 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+.++.+. + ++..+++++.++|+|||.+++...
T Consensus 121 ~~~~~~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 121 LGDVLSYVE------------NKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp CSSHHHHCS------------CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhhccc------------cHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8766555 5 678999999999999999998554
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-15 Score=132.71 Aligned_cols=108 Identities=25% Similarity=0.241 Sum_probs=90.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
...++.+|||+|||+|.++..+++.. ..+|+|+|+| .+++.++++++.+++.++++++++|+.+++++ ++||+
T Consensus 60 ~~~~~~~VLDlGcGtG~ls~~la~~g-----~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~ 132 (376)
T 3r0q_C 60 HHFEGKTVLDVGTGSGILAIWSAQAG-----ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDV 132 (376)
T ss_dssp TTTTTCEEEEESCTTTHHHHHHHHTT-----CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEE
T ss_pred ccCCCCEEEEeccCcCHHHHHHHhcC-----CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceE
Confidence 34677899999999999999888751 2499999999 99999999999999888899999999987765 78999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
|+++...+.+..+ ..+..+++++.++|||||.+++
T Consensus 133 Iv~~~~~~~l~~e---------~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 133 IISEWMGYFLLRE---------SMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp EEECCCBTTBTTT---------CTHHHHHHHHHHHEEEEEEEES
T ss_pred EEEcChhhcccch---------HHHHHHHHHHHhhCCCCeEEEE
Confidence 9998755554311 1567899999999999999986
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.9e-15 Score=128.62 Aligned_cols=112 Identities=18% Similarity=0.138 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC------CCCceEEEEcCCCCCC----
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG------VQEYVTAREGDVRSLP---- 183 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~------~~~~v~~~~~d~~~~~---- 183 (293)
.++.+|||+|||+|..+..+++. + ..+++++|+|+.+++.++++....+ ...++.++++|+.+.+
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 107 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-R----INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDK 107 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-T----CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-C----CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhh
Confidence 35679999999999999888763 2 4699999999999999999876542 1246899999998865
Q ss_pred CC--CCcccEEEecchhhhh-ccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 184 FG--DNYFDVVVSAAFFHTV-GKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 184 ~~--~~~fD~Iv~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
++ +++||+|+|+.++++. . +..++..+++++.++|+|||.+++....
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~~---------~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 108 FRDPQMCFDICSCQFVCHYSFE---------SYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CSSTTCCEEEEEEETCGGGGGG---------SHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cccCCCCEEEEEEecchhhccC---------CHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 43 4589999999999887 2 1236789999999999999999986543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=130.58 Aligned_cols=132 Identities=17% Similarity=0.279 Sum_probs=104.1
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
..+++.+..+.+..+|||||||+|..+..+++..+ ..+++++|+ +.+++.+++. ++++++.+|+.+ +
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~ 264 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP----LIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFA-S 264 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-C
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCC----CCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCccc-C
Confidence 34555543345678999999999999999998876 468999999 8888766531 359999999987 5
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHH--HHHHHHHHcccCCcEEEEEcCC----------------------
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERM--RVLGEMVRVLKPGGVGVVWDLL---------------------- 239 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~---------------------- 239 (293)
++. ||+|+++.++|+++ +.. .++++++++|+|||++++.+..
T Consensus 265 ~~~--~D~v~~~~~lh~~~------------d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~ 330 (372)
T 1fp1_D 265 VPQ--GDAMILKAVCHNWS------------DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMF 330 (372)
T ss_dssp CCC--EEEEEEESSGGGSC------------HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHH
T ss_pred CCC--CCEEEEecccccCC------------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHH
Confidence 543 99999999999988 554 9999999999999999985311
Q ss_pred --------CchHHHHHHHHcCCcceEEeeee
Q 022698 240 --------HVPEYVRRLQELKMEDIRVSERV 262 (293)
Q Consensus 240 --------~~~~~~~~l~~~gf~~~~~~~~~ 262 (293)
..+++.++++++||+.+++....
T Consensus 331 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 361 (372)
T 1fp1_D 331 ITVGGRERTEKQYEKLSKLSGFSKFQVACRA 361 (372)
T ss_dssp HHHSCCCEEHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hccCCccCCHHHHHHHHHHCCCceEEEEEcC
Confidence 12367788999999998887643
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=131.50 Aligned_cols=122 Identities=14% Similarity=0.102 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHH-------HHHHHhcCCC-Cc
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST-------LRTAKMEGVQ-EY 171 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a-------~~~~~~~~~~-~~ 171 (293)
+.++..+++.+. ..++.+|||+|||+|..+..+++..+ ..+|+|+|+|+.+++.| ++++...++. .+
T Consensus 228 p~~v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g----~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~n 302 (433)
T 1u2z_A 228 PNFLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECG----CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN 302 (433)
T ss_dssp HHHHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHC----CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC
T ss_pred HHHHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCc
Confidence 566777777664 56788999999999999999998764 34899999999999988 8888887753 57
Q ss_pred eEEEEcCCCCCC--C--CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 172 VTAREGDVRSLP--F--GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 172 v~~~~~d~~~~~--~--~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
++++++|....+ + ..++||+|+++..+. .+ +....++++.+.|||||++++.+..
T Consensus 303 V~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~-~~------------d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 303 VEFSLKKSFVDNNRVAELIPQCDVILVNNFLF-DE------------DLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp EEEEESSCSTTCHHHHHHGGGCSEEEECCTTC-CH------------HHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred eEEEEcCccccccccccccCCCCEEEEeCccc-cc------------cHHHHHHHHHHhCCCCeEEEEeecc
Confidence 999987654321 1 246899999986652 23 6778899999999999999997543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-16 Score=122.72 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=88.0
Q ss_pred hHHHHHHHHHhcCC-CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 99 HYDMAQRMVGSVND-WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 99 ~~~~~~~l~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
...+.+.++..+.. ..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++++..++. ++++.+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~------~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~ 95 (171)
T 1ws6_A 24 PVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG------WEAVLVEKDPEAVRLLKENVRRTGL--GARVVAL 95 (171)
T ss_dssp CHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT------CEEEEECCCHHHHHHHHHHHHHHTC--CCEEECS
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEec
Confidence 34455555554432 2256799999999999999888763 3699999999999999999998876 5899999
Q ss_pred CCCCC-C-C--CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHH--HcccCCcEEEEEcC
Q 022698 178 DVRSL-P-F--GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV--RVLKPGGVGVVWDL 238 (293)
Q Consensus 178 d~~~~-~-~--~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 238 (293)
|+.+. + . ..++||+|+++++++ . +....++.+. ++|+|||.+++...
T Consensus 96 d~~~~~~~~~~~~~~~D~i~~~~~~~--~------------~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 96 PVEVFLPEAKAQGERFTVAFMAPPYA--M------------DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCTT--S------------CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cHHHHHHhhhccCCceEEEEECCCCc--h------------hHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 98763 2 1 124799999999886 2 2234445555 99999999988543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=134.02 Aligned_cols=146 Identities=21% Similarity=0.233 Sum_probs=107.0
Q ss_pred ccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 022698 89 GNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV 168 (293)
Q Consensus 89 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~ 168 (293)
..|+..+....+.+.+.+++.+. ..++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++|++.+++
T Consensus 261 ~~f~q~n~~~~e~l~~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~------~~~V~gvD~s~~al~~A~~n~~~~~~ 333 (433)
T 1uwv_A 261 RDFIQVNAGVNQKMVARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ------AASVVGVEGVPALVEKGQQNARLNGL 333 (433)
T ss_dssp SSCCCSBHHHHHHHHHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred ccccccCHHHHHHHHHHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh------CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 33443333345567777777664 356679999999999999999876 35999999999999999999999887
Q ss_pred CCceEEEEcCCCCC----CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-CchH
Q 022698 169 QEYVTAREGDVRSL----PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-HVPE 243 (293)
Q Consensus 169 ~~~v~~~~~d~~~~----~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~ 243 (293)
. ++.|+++|+.+. ++.+++||+|+++||+.... .+++.+. .++|++++++.+.. +...
T Consensus 334 ~-~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~~---------------~~~~~l~-~~~p~~ivyvsc~p~tlar 396 (433)
T 1uwv_A 334 Q-NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA---------------GVMQQII-KLEPIRIVYVSCNPATLAR 396 (433)
T ss_dssp C-SEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCH---------------HHHHHHH-HHCCSEEEEEESCHHHHHH
T ss_pred C-ceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccHH---------------HHHHHHH-hcCCCeEEEEECChHHHHh
Confidence 4 699999999872 23456899999999987543 3444444 37899988885422 2223
Q ss_pred HHHHHHHcCCcceEE
Q 022698 244 YVRRLQELKMEDIRV 258 (293)
Q Consensus 244 ~~~~l~~~gf~~~~~ 258 (293)
-...+.+.||...++
T Consensus 397 d~~~l~~~Gy~~~~~ 411 (433)
T 1uwv_A 397 DSEALLKAGYTIARL 411 (433)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred hHHHHHHCCcEEEEE
Confidence 445667889987664
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=127.93 Aligned_cols=116 Identities=19% Similarity=0.149 Sum_probs=95.9
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
++.+...+++.+. ..++.+|||+|||+|.++..+++..+. ..+|+++|+|+.+++.++++++.++..+ +.+..+|
T Consensus 60 ~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d 134 (317)
T 1dl5_A 60 QPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGE---KGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGD 134 (317)
T ss_dssp CHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESC
T ss_pred CHHHHHHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECC
Confidence 4566677777664 567889999999999999999887542 2479999999999999999999888754 9999999
Q ss_pred CCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 179 ~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+.+.+...++||+|+++.++++++ +++.+.|||||++++..
T Consensus 135 ~~~~~~~~~~fD~Iv~~~~~~~~~------------------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 135 GYYGVPEFSPYDVIFVTVGVDEVP------------------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp GGGCCGGGCCEEEEEECSBBSCCC------------------HHHHHHEEEEEEEEEEB
T ss_pred hhhccccCCCeEEEEEcCCHHHHH------------------HHHHHhcCCCcEEEEEE
Confidence 987544467899999999988775 35788999999999864
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-15 Score=129.17 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC------CC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG------DN 187 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~ 187 (293)
.++.+|||+|||+|..+..+++.++. +++|+++|+|+.+++.|+++++..++.++++++.+|+.+.... .+
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~ 135 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPD---DGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEH 135 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCT---TCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSS
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCC
Confidence 34679999999999999999987653 4699999999999999999999999877899999998763211 47
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+||+|+++.... +...+++++.++|+|||++++-+.
T Consensus 136 ~fD~V~~d~~~~---------------~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 136 QFDFIFIDADKT---------------NYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp CEEEEEEESCGG---------------GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred CEeEEEEcCChH---------------HhHHHHHHHHHhcCCCeEEEEECC
Confidence 899999976522 456789999999999999999554
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=123.96 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=88.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.+|||+|||+|.++..+++..+ ..+|+++|+|+.+++.|++|++.+++. ++.++++|+.+.+. .++||+|
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~----~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~-~~~~D~V 190 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSK----PKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVEL-KDVADRV 190 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTC----CSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCC-TTCEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCc-cCCceEE
Confidence 45678999999999999999998754 359999999999999999999999874 48899999988733 5689999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
++++|.. ...++.++.+.|+|||++++.+..
T Consensus 191 i~d~p~~----------------~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 191 IMGYVHK----------------THKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp EECCCSS----------------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred EECCccc----------------HHHHHHHHHHHcCCCCEEEEEEcC
Confidence 9998751 235778889999999999986543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.6e-15 Score=124.18 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=90.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-CCC--CCccc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-PFG--DNYFD 190 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~--~~~fD 190 (293)
.++.+|||+|||+|..+..+++.++ +.+++++|+|+.+++.|++++...+..+++.+..+|+.+. +.. +++||
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD 128 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALP----EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFD 128 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCT----TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCcc
Confidence 3567999999999999999998875 4699999999999999999999988877799999998874 322 46899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
+|+++.+.. +...+++.+.++|+|||++++.+..
T Consensus 129 ~I~~~~~~~---------------~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 129 VLFIDAAKG---------------QYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp EEEEEGGGS---------------CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred EEEECCCHH---------------HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 999987643 4568899999999999999997543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=116.82 Aligned_cols=138 Identities=25% Similarity=0.235 Sum_probs=96.3
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP- 183 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~- 183 (293)
.+++......++.+|||+|||+|.++..+++.++. +.+++++|+|+ +++. .++.+...|+.+.+
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~---~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~ 76 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGG---KGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELV 76 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCT---TCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHH
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCC---CCeEEEEECcc-cccc-----------CcEEEEEcccccchh
Confidence 34444444567789999999999999999887521 36999999999 6532 34899999998865
Q ss_pred -------CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCc
Q 022698 184 -------FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKME 254 (293)
Q Consensus 184 -------~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~ 254 (293)
+++++||+|+++.++++..... .+..........+++++.++|+|||.+++.... ...++.+.+.+. |.
T Consensus 77 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~-~~ 154 (180)
T 1ej0_A 77 MKALLERVGDSKVQVVMSDMAPNMSGTPA-VDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FT 154 (180)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHH-HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EE
T ss_pred hhhhhccCCCCceeEEEECCCccccCCCc-cchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh-hh
Confidence 5567899999998887654110 000000001268899999999999999985443 344566666664 76
Q ss_pred ceEEe
Q 022698 255 DIRVS 259 (293)
Q Consensus 255 ~~~~~ 259 (293)
.+++.
T Consensus 155 ~~~~~ 159 (180)
T 1ej0_A 155 KVKVR 159 (180)
T ss_dssp EEEEE
T ss_pred hEEee
Confidence 66654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-15 Score=125.71 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=89.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-CCC----C
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-FGD----N 187 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~----~ 187 (293)
.++.+|||+|||+|..+..+++.++. +.+|+++|+|+.+++.++++++..++.++++++++|+.+. + ... +
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPK---DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAW 139 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTT
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCC---CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCC
Confidence 35679999999999999999887652 4699999999999999999999998877899999998653 1 111 7
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
+||+|+++.+.. +...+++++.++|+|||++++.+..
T Consensus 140 ~fD~v~~~~~~~---------------~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 140 QYDLIYIDADKA---------------NTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp CEEEEEECSCGG---------------GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred CccEEEECCCHH---------------HHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 899999876522 4567899999999999999996654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-14 Score=119.26 Aligned_cols=118 Identities=23% Similarity=0.236 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcC-CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC----CCceEE
Q 022698 100 YDMAQRMVGSVN-DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV----QEYVTA 174 (293)
Q Consensus 100 ~~~~~~l~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~----~~~v~~ 174 (293)
+.....+++.+. ...++.+|||+|||+|..+..+++.... ..+|+++|+|+.+++.+++++...+. .+++.+
T Consensus 61 p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~ 137 (226)
T 1i1n_A 61 PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGC---TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL 137 (226)
T ss_dssp HHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCT---TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEE
Confidence 445556666654 3457789999999999999999887531 35999999999999999999887653 346999
Q ss_pred EEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 175 ~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
...|+...+...++||+|+++.+++++. +++.++|||||++++...
T Consensus 138 ~~~d~~~~~~~~~~fD~i~~~~~~~~~~------------------~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 138 VVGDGRMGYAEEAPYDAIHVGAAAPVVP------------------QALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EESCGGGCCGGGCCEEEEEECSBBSSCC------------------HHHHHTEEEEEEEEEEES
T ss_pred EECCcccCcccCCCcCEEEECCchHHHH------------------HHHHHhcCCCcEEEEEEe
Confidence 9999886544467899999998876554 467899999999998654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=120.28 Aligned_cols=113 Identities=18% Similarity=0.128 Sum_probs=92.8
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. ..++.+|||+|||+|..+..+++.. .+++++|+|+.+++.++++....+ ++.+..+
T Consensus 54 ~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~------~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~ 123 (231)
T 1vbf_A 54 TALNLGIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV------DKVVSVEINEKMYNYASKLLSYYN---NIKLILG 123 (231)
T ss_dssp CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS------SEEEEEESCHHHHHHHHHHHTTCS---SEEEEES
T ss_pred CCHHHHHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc------CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEEC
Confidence 44567777777764 5677899999999999999988763 499999999999999999987765 5999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
|+.+.....++||+|+++.+++++. .++.++|+|||++++...
T Consensus 124 d~~~~~~~~~~fD~v~~~~~~~~~~------------------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 124 DGTLGYEEEKPYDRVVVWATAPTLL------------------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp CGGGCCGGGCCEEEEEESSBBSSCC------------------HHHHHTEEEEEEEEEEEC
T ss_pred CcccccccCCCccEEEECCcHHHHH------------------HHHHHHcCCCcEEEEEEc
Confidence 9987323457899999999988876 257889999999998654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.4e-15 Score=122.76 Aligned_cols=105 Identities=18% Similarity=0.131 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-CCCCCcccEEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-PFGDNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iv 193 (293)
++.+|||+|||+|..+..+++.++. +.+|+++|+|+.+++.++++++..++.++++++.+|+.+. +..++ ||+|+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~ 131 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISI---SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILF 131 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCT---TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEE
Confidence 4569999999999999999887652 3699999999999999999999888777899999998753 33345 99999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
++... . +...+++++.++|+|||++++.+.
T Consensus 132 ~~~~~---~------------~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 132 MDCDV---F------------NGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp EETTT---S------------CHHHHHHHHGGGEEEEEEEEEESS
T ss_pred EcCCh---h------------hhHHHHHHHHHhcCCCeEEEEECc
Confidence 97432 2 456889999999999999998554
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-14 Score=127.24 Aligned_cols=120 Identities=16% Similarity=0.259 Sum_probs=98.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.+..+|||+|||+|..+..+++.+| +.+++++|+ +.+++.+++. +++++..+|+.+ +++ .||+|+
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p--~~D~v~ 251 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFP----KLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFT-SIP--NADAVL 251 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTT-CCC--CCSEEE
T ss_pred ccCceEEEeCCCccHHHHHHHHHCC----CCeEEEeeC-HHHHhhcccC-------CCcEEEeccccC-CCC--CccEEE
Confidence 4567999999999999999998876 469999999 9988766541 349999999976 544 399999
Q ss_pred ecchhhhhccccCcchhhhHHHHH--HHHHHHHHcccC---CcEEEEEcCC-----------------------------
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERM--RVLGEMVRVLKP---GGVGVVWDLL----------------------------- 239 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~----------------------------- 239 (293)
++.++|+++ +.. .++++++++||| ||++++.+..
T Consensus 252 ~~~~lh~~~------------d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 319 (352)
T 1fp2_A 252 LKYILHNWT------------DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKER 319 (352)
T ss_dssp EESCGGGSC------------HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCE
T ss_pred eehhhccCC------------HHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCC
Confidence 999999988 544 999999999999 9999886431
Q ss_pred CchHHHHHHHHcCCcceEEee
Q 022698 240 HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 ~~~~~~~~l~~~gf~~~~~~~ 260 (293)
..+++.++++++||+.+++..
T Consensus 320 t~~e~~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 320 NEEEWKKLFIEAGFQHYKISP 340 (352)
T ss_dssp EHHHHHHHHHHTTCCEEEEEE
T ss_pred CHHHHHHHHHHCCCCeeEEEe
Confidence 124678889999999988876
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.2e-14 Score=116.91 Aligned_cols=117 Identities=15% Similarity=0.178 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcC--CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 100 YDMAQRMVGSVN--DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 100 ~~~~~~l~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+...++..+. ...++.+|||+|||+|.++..+++.++. ..+|+++|+|+.+++.++++++.+ +++.+.++
T Consensus 56 ~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~ 129 (227)
T 1g8a_A 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGW---EGKIFGIEFSPRVLRELVPIVEER---RNIVPILG 129 (227)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCT---TSEEEEEESCHHHHHHHHHHHSSC---TTEEEEEC
T ss_pred hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCC---CeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEc
Confidence 444555543332 2456789999999999999999987632 359999999999999999988765 46999999
Q ss_pred CCCCCC---CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLP---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|+.+.. ...++||+|+++.+. + .....+++++.++|||||.+++.
T Consensus 130 d~~~~~~~~~~~~~~D~v~~~~~~---~-----------~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 130 DATKPEEYRALVPKVDVIFEDVAQ---P-----------TQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CTTCGGGGTTTCCCEEEEEECCCS---T-----------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcchhhcccCCceEEEECCCC---H-----------hHHHHHHHHHHHhcCCCCEEEEE
Confidence 998732 123589999998661 1 13445699999999999999885
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-13 Score=121.98 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=118.1
Q ss_pred CccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcC---------------------------------
Q 022698 95 AVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTG--------------------------------- 141 (293)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~--------------------------------- 141 (293)
..++.+.++..++.... +.++..|+|.+||+|.+++.++.......
T Consensus 175 ~Apl~e~LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~ 253 (384)
T 3ldg_A 175 GAPIKENMAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADY 253 (384)
T ss_dssp -CCCCHHHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCT
T ss_pred CCCCcHHHHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhc
Confidence 34567888888887664 56788999999999999998887644211
Q ss_pred -CCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHH
Q 022698 142 -SLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVL 220 (293)
Q Consensus 142 -~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l 220 (293)
...+++|+|+|+.|++.|++|++.+++.+++++.++|+.+++.+ .+||+|++||||..--. ...+...++
T Consensus 254 ~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~--------~~~~l~~ly 324 (384)
T 3ldg_A 254 DIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLL--------DDKAVDILY 324 (384)
T ss_dssp TCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTS--------CHHHHHHHH
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccC--------CHHHHHHHH
Confidence 11469999999999999999999999888899999999987653 48999999999864210 123566778
Q ss_pred HHHHHcccC--CcEEEEEcCCCchHHHHHHHHcCCcceEEeeeeccceecceeeee
Q 022698 221 GEMVRVLKP--GGVGVVWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSF 274 (293)
Q Consensus 221 ~~~~~~Lkp--gG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~ 274 (293)
+.+.+.||+ ||.++++... ++. .+..|.+.-+.++-..|.. .++++..
T Consensus 325 ~~lg~~lk~~~g~~~~iit~~--~~l---~~~~g~~~~~~~~l~nG~l-~~~~~~~ 374 (384)
T 3ldg_A 325 NEMGETFAPLKTWSQFILTND--TDF---EQKFGRKADKKRKLYNGSL-KVDLYQF 374 (384)
T ss_dssp HHHHHHHTTCTTSEEEEEESC--TTH---HHHHTSCCSEEEEEEETTE-EEEEEEE
T ss_pred HHHHHHHhhCCCcEEEEEECC--HHH---HHHhCCCccceeEEecCCE-EEEEEEE
Confidence 878777776 8988886642 233 3345666555555444432 4444443
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.56 E-value=7.6e-15 Score=127.10 Aligned_cols=123 Identities=16% Similarity=0.092 Sum_probs=92.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC----CCCc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF----GDNY 188 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~ 188 (293)
..++.+|||+|||+|..+..+++.++. ..+|+++|+|+.+++.+++|++..++. ++.+.+.|+.+++. ..++
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~---~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~ 156 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKN---KGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIF 156 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTT---CSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCC
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCC---CCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhcccc
Confidence 456789999999999999999987652 269999999999999999999998874 69999999887543 2568
Q ss_pred ccEEEecchhhhhccc---cCcc---hhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 189 FDVVVSAAFFHTVGKE---YGHR---TVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~---~~~~---~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
||+|++++|+.....- +... ..........+++++.++|||||.+++..+.
T Consensus 157 fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 157 FDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp EEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 9999999887543210 0000 0000013467899999999999999986654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-14 Score=117.19 Aligned_cols=118 Identities=20% Similarity=0.114 Sum_probs=94.6
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. ..++.+|||+|||+|..+..+++.... ..+++++|+|+.+++.+++++...+.. ++.+...
T Consensus 61 ~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~ 135 (215)
T 2yxe_A 61 SAIHMVGMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGE---DGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVG 135 (215)
T ss_dssp CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCT---TSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEES
T ss_pred CcHHHHHHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEEC
Confidence 34556667776663 567789999999999999999887621 359999999999999999999887763 4999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
|+.......++||+|+++.++++++ +++.++|+|||++++...
T Consensus 136 d~~~~~~~~~~fD~v~~~~~~~~~~------------------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 136 DGTLGYEPLAPYDRIYTTAAGPKIP------------------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp CGGGCCGGGCCEEEEEESSBBSSCC------------------HHHHHTEEEEEEEEEEES
T ss_pred CcccCCCCCCCeeEEEECCchHHHH------------------HHHHHHcCCCcEEEEEEC
Confidence 9865322357899999999988776 368899999999988653
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-14 Score=128.64 Aligned_cols=119 Identities=13% Similarity=0.050 Sum_probs=90.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEEcCCCCC-C-C--CCCc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE-YVTAREGDVRSL-P-F--GDNY 188 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~-~v~~~~~d~~~~-~-~--~~~~ 188 (293)
.++.+|||+|||+|.+++.+++.. ..+|+++|+|+.|++.|++|++.+++.+ +++++++|+.+. + . ...+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-----a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~ 285 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-----AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLT 285 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-----BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-----CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCC
Confidence 456799999999999999998641 2489999999999999999999999865 799999998763 2 1 2358
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
||+|+++||+....... ......+...+++.+.++|+|||.+++.....
T Consensus 286 fD~Ii~DPP~~~~~~~~---~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 286 YDIIIIDPPSFARNKKE---VFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EEEEEECCCCC-----C---CCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ccEEEECCCCCCCChhh---HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99999999884321100 11112356678899999999999999866543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=126.48 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=96.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++.. ++ . ..+|+++|+|+.+++.+++|++.+++.+++.++++|+.+.. ++||+|+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~----~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi 263 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--N----AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVI 263 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--T----SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc--C----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEE
Confidence 3577999999999999988 65 2 46999999999999999999999998678999999998864 7899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-chHHHHHHHHc-CCcce
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH-VPEYVRRLQEL-KMEDI 256 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~l~~~-gf~~~ 256 (293)
+++|.... .+++.+.++|+|||.++++++.. .....+.+.+. |++.+
T Consensus 264 ~dpP~~~~----------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~l~~~~~~~i~ 312 (336)
T 2yx1_A 264 MNLPKFAH----------------KFIDKALDIVEEGGVIHYYTIGKDFDKAIKLFEKKCDCEVL 312 (336)
T ss_dssp ECCTTTGG----------------GGHHHHHHHEEEEEEEEEEEEESSSHHHHHHHHHHSEEEEE
T ss_pred ECCcHhHH----------------HHHHHHHHHcCCCCEEEEEEeecCchHHHHHHHHhcCCcEE
Confidence 99875432 57788899999999998865443 56677777777 66643
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-14 Score=119.76 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=93.4
Q ss_pred hHHHHHHHHHhcC-CCCCCCeEEEEcCCCChHHHHHHHHhhh-cCCCcEEEEEeCCHHHHHHHHHHHHhcCC----CCce
Q 022698 99 HYDMAQRMVGSVN-DWSTVKTALDIGCGRGILLNAVATQFKK-TGSLGRVVGLDCKKRTTLSTLRTAKMEGV----QEYV 172 (293)
Q Consensus 99 ~~~~~~~l~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~~~~~v~~vDis~~~l~~a~~~~~~~~~----~~~v 172 (293)
.+.+...+++.+. ...++.+|||+|||+|..+..+++.... ..+..+|+++|+|+.+++.+++++...+. .+++
T Consensus 63 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v 142 (227)
T 2pbf_A 63 APHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNF 142 (227)
T ss_dssp CHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTE
T ss_pred ChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCE
Confidence 3445556666654 3567789999999999999999887520 00135999999999999999999988763 3569
Q ss_pred EEEEcCCCCCC----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 173 TAREGDVRSLP----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 173 ~~~~~d~~~~~----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.+..+|+.+.. ...++||+|+++.+++++. +++.+.|+|||++++..
T Consensus 143 ~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~~------------------~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 143 KIIHKNIYQVNEEEKKELGLFDAIHVGASASELP------------------EILVDLLAENGKLIIPI 193 (227)
T ss_dssp EEEECCGGGCCHHHHHHHCCEEEEEECSBBSSCC------------------HHHHHHEEEEEEEEEEE
T ss_pred EEEECChHhcccccCccCCCcCEEEECCchHHHH------------------HHHHHhcCCCcEEEEEE
Confidence 99999998754 4457899999998876543 56788999999998853
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-14 Score=123.45 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=82.9
Q ss_pred ccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCce
Q 022698 93 YSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYV 172 (293)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v 172 (293)
+.++-..+.+.+.+++.+. ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....+..+++
T Consensus 7 gq~fl~d~~i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v 79 (285)
T 1zq9_A 7 GQHILKNPLIINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEK------AKKVVACELDPRLVAELHKRVQGTPVASKL 79 (285)
T ss_dssp -CCEECCHHHHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHH------SSEEEEEESCHHHHHHHHHHHTTSTTGGGE
T ss_pred CcCccCCHHHHHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhh------CCEEEEEECCHHHHHHHHHHHHhcCCCCce
Confidence 3344456778888888775 456789999999999999999876 359999999999999999998776655679
Q ss_pred EEEEcCCCCCCCCCCcccEEEecchhhhhc
Q 022698 173 TAREGDVRSLPFGDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 173 ~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~ 202 (293)
+++++|+.+.+++ +||+|++|.||+...
T Consensus 80 ~~~~~D~~~~~~~--~fD~vv~nlpy~~~~ 107 (285)
T 1zq9_A 80 QVLVGDVLKTDLP--FFDTCVANLPYQISS 107 (285)
T ss_dssp EEEESCTTTSCCC--CCSEEEEECCGGGHH
T ss_pred EEEEcceecccch--hhcEEEEecCcccch
Confidence 9999999887653 799999999988764
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=126.76 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=92.1
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
.+.+++.+. ..++.+|||||||+|.++..+++. + ..+|+|+|+|+ +++.++++++.+++.++++++.+|+.++
T Consensus 39 ~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g----~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 111 (348)
T 2y1w_A 39 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-G----ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV 111 (348)
T ss_dssp HHHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-C----CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhC
Confidence 344554443 346789999999999999888764 2 35999999996 8899999999988877899999999987
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+.+ ++||+|+++.+++++.. ++....+.++.++|||||.+++
T Consensus 112 ~~~-~~~D~Ivs~~~~~~~~~----------~~~~~~l~~~~~~LkpgG~li~ 153 (348)
T 2y1w_A 112 SLP-EQVDIIISEPMGYMLFN----------ERMLESYLHAKKYLKPSGNMFP 153 (348)
T ss_dssp CCS-SCEEEEEECCCBTTBTT----------TSHHHHHHHGGGGEEEEEEEES
T ss_pred CCC-CceeEEEEeCchhcCCh----------HHHHHHHHHHHhhcCCCeEEEE
Confidence 654 57999999988776541 1456778889999999999985
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-14 Score=127.48 Aligned_cols=127 Identities=13% Similarity=0.011 Sum_probs=93.3
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
...+.++..+. .++.+|||+|||+|.+++.+++. +++|+++|+|+.+++.+++|++.+++.. .+.++|+.
T Consensus 202 r~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~------ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~ 271 (393)
T 4dmg_A 202 RENRRLFEAMV--RPGERVLDVYSYVGGFALRAARK------GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEAL 271 (393)
T ss_dssp HHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHH
T ss_pred HHHHHHHHHHh--cCCCeEEEcccchhHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHH
Confidence 34444454432 35789999999999999999875 3469999999999999999999998763 56688887
Q ss_pred CCC-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 181 SLP-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 181 ~~~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
+.. ...++||+|++++|+..... ........+...+++.+.++|+|||.++++.+..
T Consensus 272 ~~l~~~~~~fD~Ii~dpP~f~~~~---~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 272 PTLRGLEGPFHHVLLDPPTLVKRP---EELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp HHHHTCCCCEEEEEECCCCCCSSG---GGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHHHHhcCCCCEEEECCCcCCCCH---HHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 642 11344999999988633211 1222223466789999999999999999766544
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=124.25 Aligned_cols=105 Identities=22% Similarity=0.286 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-C-----CCC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-F-----GDN 187 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~ 187 (293)
++.+|||||||+|..+..+++.++. +.+++++|+|+.+++.|+++++..++.++++++.+|+.+. + + ..+
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 155 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPE---DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG 155 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCT---TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCC
Confidence 4579999999999999999988753 3699999999999999999999988877899999998753 2 1 147
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+||+|++.... . +...+++.+.++|+|||++++-+
T Consensus 156 ~fD~V~~d~~~---~------------~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 156 SYDFIFVDADK---D------------NYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp CBSEEEECSCS---T------------THHHHHHHHHHHBCTTCCEEEEC
T ss_pred CEEEEEEcCch---H------------HHHHHHHHHHHhCCCCeEEEEec
Confidence 89999987542 1 45688999999999999999854
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-14 Score=135.07 Aligned_cols=123 Identities=16% Similarity=0.280 Sum_probs=97.1
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc------CCCCc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME------GVQEY 171 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~------~~~~~ 171 (293)
......+.+++.+.. .++.+|||+|||+|.++..+++..+ +..+|+|+|+|+.|++.|++++... +. .+
T Consensus 705 L~eqRle~LLelL~~-~~g~rVLDVGCGTG~lai~LAr~g~---p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~n 779 (950)
T 3htx_A 705 LSKQRVEYALKHIRE-SSASTLVDFGCGSGSLLDSLLDYPT---SLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KS 779 (950)
T ss_dssp HHHHHHHHHHHHHHH-SCCSEEEEETCSSSHHHHHHTSSCC---CCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SE
T ss_pred HHHHHHHHHHHHhcc-cCCCEEEEECCCCCHHHHHHHHhCC---CCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-Cc
Confidence 444555666665542 3678999999999999988876641 1369999999999999999876532 33 46
Q ss_pred eEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 172 VTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 172 v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
++++++|+.++++.+++||+|+++.+++|++ ......+++++.++|||| .+++.
T Consensus 780 VefiqGDa~dLp~~d~sFDlVV~~eVLeHL~----------dp~l~~~L~eI~RvLKPG-~LIIS 833 (950)
T 3htx_A 780 ATLYDGSILEFDSRLHDVDIGTCLEVIEHME----------EDQACEFGEKVLSLFHPK-LLIVS 833 (950)
T ss_dssp EEEEESCTTSCCTTSCSCCEEEEESCGGGSC----------HHHHHHHHHHHHHTTCCS-EEEEE
T ss_pred eEEEECchHhCCcccCCeeEEEEeCchhhCC----------hHHHHHHHHHHHHHcCCC-EEEEE
Confidence 9999999999888788999999999999998 223446999999999999 66664
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-13 Score=122.21 Aligned_cols=162 Identities=14% Similarity=0.223 Sum_probs=116.0
Q ss_pred ccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcC----------------------------------
Q 022698 96 VPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTG---------------------------------- 141 (293)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~---------------------------------- 141 (293)
.++.+.++..++.... +.++.+|||+|||+|.+++.++.......
T Consensus 177 Apl~e~lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~ 255 (385)
T 3ldu_A 177 APIRETLAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNE 255 (385)
T ss_dssp CCCCHHHHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred CCCcHHHHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhcc
Confidence 4567778888887664 56778999999999999999887643211
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHH
Q 022698 142 SLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLG 221 (293)
Q Consensus 142 ~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 221 (293)
...+|+|+|+|+.+++.|++|+..+++.++++|.+.|+.+++. ..+||+|++||||..-- ....+...+++
T Consensus 256 ~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-~~~~D~Iv~NPPyg~rl--------~~~~~l~~ly~ 326 (385)
T 3ldu_A 256 SKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS-EDEFGFIITNPPYGERL--------EDKDSVKQLYK 326 (385)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-SCBSCEEEECCCCCCSH--------HHHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-CCCCcEEEECCCCcCcc--------CCHHHHHHHHH
Confidence 1147999999999999999999999987789999999998764 35899999999986321 11235667888
Q ss_pred HHHHcccC--CcEEEEEcCCCchHHHHHHHHcCCcceEEeeeeccceecceeee
Q 022698 222 EMVRVLKP--GGVGVVWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVS 273 (293)
Q Consensus 222 ~~~~~Lkp--gG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~ 273 (293)
++.+.|++ ||.++++... ++. .+..|....+..+-..|.. .++++.
T Consensus 327 ~lg~~lk~~~g~~~~iit~~--~~l---~~~~g~~~~~~~~l~nG~l-~~~~~~ 374 (385)
T 3ldu_A 327 ELGYAFRKLKNWSYYLITSY--EDF---EYEFGQKADKKRKLYNGML-KTNFFQ 374 (385)
T ss_dssp HHHHHHHTSBSCEEEEEESC--TTH---HHHHTSCCSEEEEEEETTE-EEEEEE
T ss_pred HHHHHHhhCCCCEEEEEECC--HHH---HHhhCCCcccceEEecCCE-EEEEEE
Confidence 88878877 8888776542 222 2344655555444444422 444443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.54 E-value=6.8e-14 Score=119.09 Aligned_cols=130 Identities=21% Similarity=0.243 Sum_probs=91.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc--------CCCCceEEEEcCCCC-CC-
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--------GVQEYVTAREGDVRS-LP- 183 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--------~~~~~v~~~~~d~~~-~~- 183 (293)
.++.+|||+|||+|.++..+++..+ ..+++|+|+|+.+++.+++++..+ ++ .++.++.+|+.+ ++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~ 122 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFP----EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPN 122 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHST----TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC----CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHH
Confidence 3567899999999999999998865 468999999999999999998765 55 469999999987 44
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc--hHHHHHHHHcC
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV--PEYVRRLQELK 252 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~l~~~g 252 (293)
++.+++|.|+.+.+-.+........-. ....+++++.++|+|||.|++...... +...+.+.+.|
T Consensus 123 ~~~~~~~d~v~~~~p~p~~k~~~~~~r~----~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 190 (246)
T 2vdv_E 123 FFEKGQLSKMFFCFPDPHFKQRKHKARI----ITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP 190 (246)
T ss_dssp TSCTTCEEEEEEESCCCC------CSSC----CCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHST
T ss_pred hccccccCEEEEECCCcccccchhHHhh----ccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCc
Confidence 557889999876332111100000000 014789999999999999988542211 22344555565
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6e-14 Score=121.06 Aligned_cols=120 Identities=17% Similarity=0.213 Sum_probs=97.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.+++.+++.. .++|+++|+|+.+++.+++|++.|++.+++.++++|+.+++ ..+.||.|+
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g-----~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi 197 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYG-----KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRIL 197 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHT-----CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc-----CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEE
Confidence 467899999999999999888762 35899999999999999999999999999999999999875 357899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--------CchHHHHHHHHcCCcc
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--------HVPEYVRRLQELKMED 255 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--------~~~~~~~~l~~~gf~~ 255 (293)
+++|... ..++..+.++|+|||++.+++.. ..+...+...+.|+..
T Consensus 198 ~~~p~~~----------------~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 198 MGYVVRT----------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp ECCCSSG----------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred ECCCCcH----------------HHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcE
Confidence 9977543 24566778899999998775432 1234556667888874
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-14 Score=126.02 Aligned_cols=106 Identities=23% Similarity=0.254 Sum_probs=88.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++. + ..+|+|+|+| .+++.|+++++.+++.++++++.+|+.+++++.++||+|+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g----~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 110 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-G----AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIII 110 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-C----CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred cCCCEEEEecCccHHHHHHHHHC-C----CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEE
Confidence 35679999999999999888764 2 2499999999 5999999999999988889999999998877668899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
++.+.+.+..+ ..+..++.++.++|+|||.++
T Consensus 111 s~~~~~~l~~~---------~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 111 SEWMGYFLLYE---------SMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp ECCCBTTBSTT---------CCHHHHHHHHHHHEEEEEEEE
T ss_pred EeCchhhcccH---------HHHHHHHHHHHhhcCCCeEEE
Confidence 98765543311 146678899999999999987
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-14 Score=127.79 Aligned_cols=133 Identities=14% Similarity=0.035 Sum_probs=99.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEEcCCCCCCC----CCCcc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV-QEYVTAREGDVRSLPF----GDNYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~-~~~v~~~~~d~~~~~~----~~~~f 189 (293)
++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++|++.+++ .++++++++|+.+... ...+|
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-----~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-----CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-----CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCC
Confidence 56799999999999999998752 24999999999999999999999988 5579999999876421 14689
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc---hH----HHHHHHHcCCcc
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV---PE----YVRRLQELKMED 255 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~----~~~~l~~~gf~~ 255 (293)
|+|++++|........-.. ...+...++.++.+.|+|||++++.+.... ++ +.+.+.+.|+..
T Consensus 295 D~Ii~dpP~~~~~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 364 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQLMG---ACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV 364 (396)
T ss_dssp EEEEECCSSTTTCSSSSSC---CCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred CEEEECCCCCCCChhHHHH---HHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence 9999999875432110000 112667899999999999999998665432 12 223556677653
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-13 Score=122.21 Aligned_cols=164 Identities=16% Similarity=0.159 Sum_probs=115.0
Q ss_pred cCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcC--------------------------------
Q 022698 94 SAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTG-------------------------------- 141 (293)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-------------------------------- 141 (293)
...++.+.++..++.... +.++.+|||++||+|.+++.++.......
T Consensus 181 ~~Apl~e~lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~ 259 (393)
T 3k0b_A 181 GSAPIKETMAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLAN 259 (393)
T ss_dssp CSCSCCHHHHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCC
T ss_pred CCCCCcHHHHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhc
Confidence 344577888888887764 56778999999999999998887644211
Q ss_pred --CCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHH
Q 022698 142 --SLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRV 219 (293)
Q Consensus 142 --~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (293)
...+|+|+|+|+.|++.|++|+..+++.+++++.++|+.+++.+ .+||+|++||||..-- ....+...+
T Consensus 260 ~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl--------~~~~~l~~l 330 (393)
T 3k0b_A 260 YDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERL--------EDEEAVRQL 330 (393)
T ss_dssp TTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSH--------HHHHHHHHH
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCcccc--------CCchhHHHH
Confidence 11469999999999999999999999877899999999987653 5899999999985321 112245567
Q ss_pred HHHHHHcccC--CcEEEEEcCCCchHHHHHHHHcCCcceEEeeeeccceecceeee
Q 022698 220 LGEMVRVLKP--GGVGVVWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVS 273 (293)
Q Consensus 220 l~~~~~~Lkp--gG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~ 273 (293)
++.+.+.||+ ||.++++... ++. .+..|....+..+-..| ...++++.
T Consensus 331 y~~lg~~lk~~~g~~~~iit~~--~~l---~~~~g~~~~~~~~l~nG-~l~~~~~~ 380 (393)
T 3k0b_A 331 YREMGIVYKRMPTWSVYVLTSY--ELF---EEVYGKKATKKRKLYNG-YLRTDLYQ 380 (393)
T ss_dssp HHHHHHHHHTCTTCEEEEEECC--TTH---HHHHTSCCSEEEEEC-----CEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEECC--HHH---HHHhCCCcccceEEecC-CEEEEEEE
Confidence 7777777766 8888886542 233 33446555444443333 33444443
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-14 Score=118.78 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhcC-CCCCCCeEEEEcCCCChHHHHHHHHhhhc--CCCcEEEEEeCCHHHHHHHHHHHHhcCC----CCc
Q 022698 99 HYDMAQRMVGSVN-DWSTVKTALDIGCGRGILLNAVATQFKKT--GSLGRVVGLDCKKRTTLSTLRTAKMEGV----QEY 171 (293)
Q Consensus 99 ~~~~~~~l~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~--~~~~~v~~vDis~~~l~~a~~~~~~~~~----~~~ 171 (293)
.+.+...+++.+. ...++.+|||+|||+|..+..+++..+.. .+..+|+++|+|+.+++.+++++...+. .++
T Consensus 67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 146 (227)
T 1r18_A 67 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ 146 (227)
T ss_dssp CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence 4556666777664 35677899999999999999998876520 0014899999999999999999876541 245
Q ss_pred eEEEEcCCCCCCCCC-CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 172 VTAREGDVRSLPFGD-NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 172 v~~~~~d~~~~~~~~-~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+.+...|..+ +++. ++||+|+++.+++++. +++.+.|||||++++..
T Consensus 147 v~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~~------------------~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 147 LLIVEGDGRK-GYPPNAPYNAIHVGAAAPDTP------------------TELINQLASGGRLIVPV 194 (227)
T ss_dssp EEEEESCGGG-CCGGGCSEEEEEECSCBSSCC------------------HHHHHTEEEEEEEEEEE
T ss_pred eEEEECCccc-CCCcCCCccEEEECCchHHHH------------------HHHHHHhcCCCEEEEEE
Confidence 8999999987 3333 7899999998887664 56789999999998854
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=122.68 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC----------CC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG----------VQ 169 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~----------~~ 169 (293)
+.....++..+. ..++.+|||+|||+|.++..+++.... ..+|+++|+|+.+++.|++++...+ ..
T Consensus 91 ~~~~~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~ 166 (336)
T 2b25_A 91 PKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGS---QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP 166 (336)
T ss_dssp HHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred HHHHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHHHhhcccccccccccC
Confidence 444555666553 567889999999999999999887521 3699999999999999999987532 23
Q ss_pred CceEEEEcCCCCC--CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 170 EYVTAREGDVRSL--PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 170 ~~v~~~~~d~~~~--~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+++++..+|+.+. ++++++||+|+++.+ ++..+++++.++|+|||.+++...
T Consensus 167 ~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~-----------------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 167 DNVDFIHKDISGATEDIKSLTFDAVALDML-----------------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp CCEEEEESCTTCCC-------EEEEEECSS-----------------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred CceEEEECChHHcccccCCCCeeEEEECCC-----------------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 5699999999875 345678999999743 223478889999999999988554
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-14 Score=131.40 Aligned_cols=141 Identities=15% Similarity=0.102 Sum_probs=103.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CCCCcccE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FGDNYFDV 191 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~ 191 (293)
..++.+|||+|||+|..+..+++.++. ..+|+++|+|+.+++.+++|++..++. ++.+.+.|..+++ ...++||+
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~---~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~~FD~ 178 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKG---KGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSGFFDR 178 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTT---CSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTTCEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhccccCCE
Confidence 467889999999999999999988763 359999999999999999999999985 5999999987754 23578999
Q ss_pred EEecchhhhhcc---ccC------c-chhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc----hH-HHHHHHHcCCcce
Q 022698 192 VVSAAFFHTVGK---EYG------H-RTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV----PE-YVRRLQELKMEDI 256 (293)
Q Consensus 192 Iv~~~~~~~~~~---~~~------~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~-~~~~l~~~gf~~~ 256 (293)
|++++|+..... .+. . ....-......+++++.++|||||.|+++++... ++ +...+.+.+|+.+
T Consensus 179 Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~l~ 258 (456)
T 3m4x_A 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIE 258 (456)
T ss_dssp EEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEE
T ss_pred EEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCEEE
Confidence 999988533221 000 0 0000112334789999999999999998766542 23 4555667776544
Q ss_pred E
Q 022698 257 R 257 (293)
Q Consensus 257 ~ 257 (293)
.
T Consensus 259 ~ 259 (456)
T 3m4x_A 259 E 259 (456)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=128.02 Aligned_cols=142 Identities=20% Similarity=0.198 Sum_probs=103.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcc
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYF 189 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f 189 (293)
...++.+|||+|||+|..+..++..++. ..+++++|+|+.+++.+++|++..++. ++.+.+.|+.+.+ +++++|
T Consensus 256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~---~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~f 331 (450)
T 2yxl_A 256 DPKPGETVVDLAAAPGGKTTHLAELMKN---KGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIGEEVA 331 (450)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTT---CSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSCSSCE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhccCCC
Confidence 3567789999999999999999988752 259999999999999999999998873 5999999998865 444789
Q ss_pred cEEEecchhhhhcc---ccC------cch-hhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc----hH-HHHHHHHc-CC
Q 022698 190 DVVVSAAFFHTVGK---EYG------HRT-VEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV----PE-YVRRLQEL-KM 253 (293)
Q Consensus 190 D~Iv~~~~~~~~~~---~~~------~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~-~~~~l~~~-gf 253 (293)
|+|++++|+..... .+. ... ..-......+++++.++|||||.++++++... ++ +...+.+. +|
T Consensus 332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~ 411 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEF 411 (450)
T ss_dssp EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSC
T ss_pred CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCC
Confidence 99999877643321 000 000 00011225789999999999999998776542 22 34455665 67
Q ss_pred cceE
Q 022698 254 EDIR 257 (293)
Q Consensus 254 ~~~~ 257 (293)
+.+.
T Consensus 412 ~~~~ 415 (450)
T 2yxl_A 412 KLVP 415 (450)
T ss_dssp EECC
T ss_pred EEee
Confidence 6544
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.8e-14 Score=118.50 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=87.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C---------
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P--------- 183 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------- 183 (293)
.++.+|||+|||+|..+..+++.++. +.+++++|+|+.+++.+++++...+..+++.+..+|+.+. +
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~ 135 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPE---DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAP 135 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccc
Confidence 35679999999999999999988652 3599999999999999999999888877799999998652 1
Q ss_pred -----CC-C-CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 -----FG-D-NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 -----~~-~-~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
++ + ++||+|+++.... +...+++++.++|+|||++++.+.
T Consensus 136 ~~~~~f~~~~~~fD~I~~~~~~~---------------~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 136 SWASDFAFGPSSIDLFFLDADKE---------------NYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp GGGTTTCCSTTCEEEEEECSCGG---------------GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred cccccccCCCCCcCEEEEeCCHH---------------HHHHHHHHHHHHcCCCeEEEEEcc
Confidence 11 2 6899999985432 445789999999999999999653
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-14 Score=120.85 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-C-----CC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-F-----GD 186 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~ 186 (293)
.++.+|||||||+|..+..+++.++. +.+++++|+|+.+++.++++++..++.++++++.+|+.+. + + ..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~ 145 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPD---DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESE 145 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCT
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCC
Confidence 34679999999999999999988763 3699999999999999999999998877899999998753 2 1 14
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
++||+|++.... . +...+++.+.++|+|||++++-+.
T Consensus 146 ~~fD~I~~d~~~---~------------~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 146 GSYDFGFVDADK---P------------NYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp TCEEEEEECSCG---G------------GHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CCcCEEEECCch---H------------HHHHHHHHHHHhcCCCeEEEEecC
Confidence 689999987432 1 456889999999999999988553
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-14 Score=138.08 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=100.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCC-CCCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSL-PFGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~-~~~~~~fD~I 192 (293)
++.+|||+|||+|.+++.++..- ..+|+++|+|+.+++.+++|++.+++. ++++++++|+.+. +...++||+|
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-----a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~I 613 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-----ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLI 613 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCC-----CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEE
Confidence 46799999999999999888641 247999999999999999999999986 5799999999873 3335789999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-CchHHHHHHHHcCCc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-HVPEYVRRLQELKME 254 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~l~~~gf~ 254 (293)
+++||+...... ....+....+...+++.+.++|+|||+|++.+.. ......+.+.+.||+
T Consensus 614 i~DPP~f~~~~~-~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~ 675 (703)
T 3v97_A 614 FIDPPTFSNSKR-MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLK 675 (703)
T ss_dssp EECCCSBC--------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEE
T ss_pred EECCccccCCcc-chhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCc
Confidence 999986432110 0011222347788999999999999999986544 122235677888876
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=116.85 Aligned_cols=115 Identities=20% Similarity=0.183 Sum_probs=92.8
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. ..++.+|||+|||+|.++..+++..+ .+|+++|+|+.+++.+++++...+..+ +.+..+
T Consensus 75 ~~~~~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~ 147 (235)
T 1jg1_A 75 SAPHMVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-----TDVYTIERIPELVEFAKRNLERAGVKN-VHVILG 147 (235)
T ss_dssp CCHHHHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-----SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEES
T ss_pred ccHHHHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEC
Confidence 45667777777764 56778999999999999999988753 489999999999999999998887644 999999
Q ss_pred CCCCCCCCC-CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 178 DVRSLPFGD-NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 178 d~~~~~~~~-~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
|+.. +++. .+||+|+++.++++++ +++.+.|+|||++++...
T Consensus 148 d~~~-~~~~~~~fD~Ii~~~~~~~~~------------------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 148 DGSK-GFPPKAPYDVIIVTAGAPKIP------------------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CGGG-CCGGGCCEEEEEECSBBSSCC------------------HHHHHTEEEEEEEEEEEC
T ss_pred Cccc-CCCCCCCccEEEECCcHHHHH------------------HHHHHhcCCCcEEEEEEe
Confidence 9733 3333 4599999998887766 257889999999988543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=124.14 Aligned_cols=125 Identities=13% Similarity=0.212 Sum_probs=99.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.+..+|||||||+|..+..+++..| ..+++++|+ +.+++.+++ . .++++..+|+.+ +.+ +||+|+
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~--~~D~v~ 256 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFP----HLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK-SIP--SADAVL 256 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCT----TSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT-CCC--CCSEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCC----CCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC-CCC--CceEEE
Confidence 3557999999999999999998876 468999999 787765543 1 349999999987 554 499999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccC---CcEEEEEcCC------------------------------C
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKP---GGVGVVWDLL------------------------------H 240 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~------------------------------~ 240 (293)
++.++|+++ +.+...++++++++|+| ||++++++.. .
T Consensus 257 ~~~vlh~~~----------d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t 326 (358)
T 1zg3_A 257 LKWVLHDWN----------DEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERT 326 (358)
T ss_dssp EESCGGGSC----------HHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEE
T ss_pred EcccccCCC----------HHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCC
Confidence 999999988 12334999999999999 9999985431 1
Q ss_pred chHHHHHHHHcCCcceEEeeeecc
Q 022698 241 VPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 241 ~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
..++.++++++||+.++++. ..+
T Consensus 327 ~~e~~~ll~~aGf~~~~~~~-~~~ 349 (358)
T 1zg3_A 327 KQEWEKLIYDAGFSSYKITP-ISG 349 (358)
T ss_dssp HHHHHHHHHHTTCCEEEEEE-ETT
T ss_pred HHHHHHHHHHcCCCeeEEEe-cCC
Confidence 23677889999999988876 344
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-13 Score=111.97 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=92.9
Q ss_pred HHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--
Q 022698 106 MVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-- 183 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 183 (293)
+.+....+.++.+|||+|||+|.++..+++..+.. +.+|+|+|+|+.+ . .+++.+.++|+.+.+
T Consensus 13 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~--~~~v~gvD~s~~~-----------~-~~~v~~~~~d~~~~~~~ 78 (201)
T 2plw_A 13 LDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNY--KNKIIGIDKKIMD-----------P-IPNVYFIQGEIGKDNMN 78 (201)
T ss_dssp HHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTS--CEEEEEEESSCCC-----------C-CTTCEEEECCTTTTSSC
T ss_pred HHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCC--CceEEEEeCCccC-----------C-CCCceEEEccccchhhh
Confidence 33333334567799999999999999999886520 2599999999941 1 135889999998765
Q ss_pred -----------------------CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-
Q 022698 184 -----------------------FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL- 239 (293)
Q Consensus 184 -----------------------~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~- 239 (293)
+++++||+|+++.++++.... ..+..........+++++.++|+|||.+++....
T Consensus 79 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~-~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 79 NIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNK-IDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG 157 (201)
T ss_dssp CC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCH-HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred hhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCc-ccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence 455789999998776543100 0000000011235889999999999999884332
Q ss_pred -CchHHHHHHHHcCCcceEEeeeeccc
Q 022698 240 -HVPEYVRRLQELKMEDIRVSERVTAF 265 (293)
Q Consensus 240 -~~~~~~~~l~~~gf~~~~~~~~~~~~ 265 (293)
...++...++. .|..+.+.+.....
T Consensus 158 ~~~~~l~~~l~~-~f~~v~~~~~~~~r 183 (201)
T 2plw_A 158 SQTNNLKTYLKG-MFQLVHTTKPKASR 183 (201)
T ss_dssp TTHHHHHHHHHT-TEEEEEECCCC---
T ss_pred CCHHHHHHHHHH-HHheEEEECCcccC
Confidence 23455555544 57777776555543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=131.82 Aligned_cols=140 Identities=18% Similarity=0.160 Sum_probs=101.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CCCCcccE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FGDNYFDV 191 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~ 191 (293)
..++.+|||+|||+|..+..+++.++. ..+|+++|+|+.+++.+++|++..++. +.+.+.|+.+++ ...++||+
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~---~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~ 173 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGG---KGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHR 173 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTT---CSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCE
Confidence 467789999999999999999988764 259999999999999999999999985 899999987754 23578999
Q ss_pred EEecchhhhhcc---ccCc-------chhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC----chHHH-HHHHHc-CCcc
Q 022698 192 VVSAAFFHTVGK---EYGH-------RTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH----VPEYV-RRLQEL-KMED 255 (293)
Q Consensus 192 Iv~~~~~~~~~~---~~~~-------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~-~~l~~~-gf~~ 255 (293)
|++++|+..... .+.. ....-......+++++.++|||||+|+++.+.. .++.. ..+++. +|+.
T Consensus 174 Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~l 253 (464)
T 3m6w_A 174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRL 253 (464)
T ss_dssp EEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEEE
T ss_pred EEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcEE
Confidence 999988632221 1111 001111233678999999999999999876653 23343 444454 4544
Q ss_pred eE
Q 022698 256 IR 257 (293)
Q Consensus 256 ~~ 257 (293)
+.
T Consensus 254 ~~ 255 (464)
T 3m6w_A 254 ED 255 (464)
T ss_dssp EC
T ss_pred Ee
Confidence 33
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-14 Score=120.13 Aligned_cols=107 Identities=25% Similarity=0.276 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC----CCCC--Cc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL----PFGD--NY 188 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~--~~ 188 (293)
++.+|||+|||+|..+..+++.++. +.+++++|+|+.+++.|++++...++.+++++..+|+.+. +..+ ++
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~ 148 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPP---DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPE 148 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCT---TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence 4569999999999999999987653 3599999999999999999999888877899999997542 1222 68
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
||+|+++.+. . +...+++++.++|+|||++++.+..
T Consensus 149 fD~V~~d~~~---~------------~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 149 FDLIFIDADK---R------------NYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EEEEEECSCG---G------------GHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred cCEEEECCCH---H------------HHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 9999987552 2 5567899999999999999986543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=124.37 Aligned_cols=115 Identities=22% Similarity=0.190 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC----CCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF----GDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD 190 (293)
++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|++|++.+++.+ ++++++|+.+... ...+||
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD 281 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG------FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFD 281 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH------EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCee
Confidence 5679999999999999999876 2599999999999999999999998755 9999999876421 156899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
+|++++|....... .......+...++..+.++|+|||.++++++.
T Consensus 282 ~Ii~dpP~~~~~~~---~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 282 LVVLDPPAFAKGKK---DVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp EEEECCCCSCCSTT---SHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEECCCCCCCChh---HHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 99999887443211 11222346678999999999999999987654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-14 Score=119.15 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=88.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCC----C
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGD----N 187 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~----~ 187 (293)
.++.+|||+|||+|..+..+++.++. +.+++++|+|+.+++.++++++.++..++++++.+|+.+.. +.. +
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~ 144 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPA---DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG 144 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCT---TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCC
Confidence 45679999999999999999877642 36999999999999999999999888778999999986531 111 6
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+||+|+++++.. +...+++++.++|+|||.+++.+.
T Consensus 145 ~~D~v~~d~~~~---------------~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 145 TFDVAVVDADKE---------------NCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp CEEEEEECSCST---------------THHHHHHHHHHHEEEEEEEEEECC
T ss_pred CccEEEECCCHH---------------HHHHHHHHHHHHcCCCeEEEEECC
Confidence 899999986522 456789999999999999999654
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.9e-13 Score=121.93 Aligned_cols=122 Identities=17% Similarity=0.161 Sum_probs=92.2
Q ss_pred hcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 87 AAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 87 ~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
....||..+....+.+.+.+++ ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++|++.+
T Consensus 266 ~~~~F~q~n~~~~e~l~~~~~~----~~~~~~VLDlgcG~G~~sl~la~~------~~~V~gvD~s~~ai~~A~~n~~~n 335 (425)
T 2jjq_A 266 HPNSFFQTNSYQAVNLVRKVSE----LVEGEKILDMYSGVGTFGIYLAKR------GFNVKGFDSNEFAIEMARRNVEIN 335 (425)
T ss_dssp CTTSCCCSBHHHHHHHHHHHHH----HCCSSEEEEETCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHhhc----cCCCCEEEEeeccchHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHc
Confidence 3334554444444555666655 245679999999999999998875 359999999999999999999998
Q ss_pred CCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 167 GVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 167 ~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++. ++|.++|+.++.. . +||+|++++|..... ..+++.+. .|+|||++++..
T Consensus 336 gl~--v~~~~~d~~~~~~-~-~fD~Vv~dPPr~g~~--------------~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 336 NVD--AEFEVASDREVSV-K-GFDTVIVDPPRAGLH--------------PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp TCC--EEEEECCTTTCCC-T-TCSEEEECCCTTCSC--------------HHHHHHHH-HHCCSEEEEEES
T ss_pred CCc--EEEEECChHHcCc-c-CCCEEEEcCCccchH--------------HHHHHHHH-hcCCCcEEEEEC
Confidence 875 9999999988642 2 899999999865433 23444444 489999998865
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=128.24 Aligned_cols=134 Identities=15% Similarity=0.159 Sum_probs=98.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-CCCcccEEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-GDNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Iv 193 (293)
++.+|||+|||+|..+..+++.++. ..+|+++|+|+.+++.+++|++..++. ++.+.+.|+.+++. ..++||.|+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~---~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~fD~Il 192 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNN---EGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEMFDAIL 192 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTT---CSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccccCCEEE
Confidence 7789999999999999999988753 359999999999999999999998874 59999999987653 356899999
Q ss_pred ecchhhhhc---cccCc----ch---hhhHHHHHHHHHHHHHcccCCcEEEEEcCCC----chHH-HHHHHHcC
Q 022698 194 SAAFFHTVG---KEYGH----RT---VEAAAERMRVLGEMVRVLKPGGVGVVWDLLH----VPEY-VRRLQELK 252 (293)
Q Consensus 194 ~~~~~~~~~---~~~~~----~~---~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~-~~~l~~~g 252 (293)
+++|+.... ..+.. .. ..-......+++++.++|||||+|+++++.. .++. ...+++.+
T Consensus 193 ~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 193 LDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp EECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred ECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence 988864321 11110 00 0001124578999999999999999976643 3334 44455554
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=126.13 Aligned_cols=117 Identities=19% Similarity=0.138 Sum_probs=92.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC----CCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF----GDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD 190 (293)
++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|++|++.+++.++++++++|+.+... ..++||
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g----~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD 291 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-G----ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFD 291 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-C----CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCC
Confidence 6779999999999999999865 1 249999999999999999999999886579999999876421 256899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
+|++++|....... .......+...++.++.++|+|||.++++++.
T Consensus 292 ~Vi~dpP~~~~~~~---~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 292 IVVLDPPAFVQHEK---DLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp EEEECCCCSCSSGG---GHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred EEEECCCCCCCCHH---HHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 99999887543210 11222246778999999999999999887654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-13 Score=126.33 Aligned_cols=152 Identities=20% Similarity=0.137 Sum_probs=106.5
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
+++.....+...+. ..++.+|||+|||+|..+..+++..+ +.+++++|+|+.+++.+++|++..+.. +.+.+.
T Consensus 230 ~qd~~s~~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~----~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~ 302 (429)
T 1sqg_A 230 VQDASAQGCMTWLA-PQNGEHILDLCAAPGGKTTHILEVAP----EAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQG 302 (429)
T ss_dssp ECCHHHHTHHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCT----TCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEEC
T ss_pred eeCHHHHHHHHHcC-CCCcCeEEEECCCchHHHHHHHHHcC----CCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeC
Confidence 44444444444443 46778999999999999999998865 359999999999999999999998864 789999
Q ss_pred CCCCCC--CCCCcccEEEecchhhhhcc---ccCc-------chhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc----
Q 022698 178 DVRSLP--FGDNYFDVVVSAAFFHTVGK---EYGH-------RTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV---- 241 (293)
Q Consensus 178 d~~~~~--~~~~~fD~Iv~~~~~~~~~~---~~~~-------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---- 241 (293)
|+.+.+ ++.++||+|++++|+..... .+.. +...-......+++++.++|||||+++++++...
T Consensus 303 D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~en 382 (429)
T 1sqg_A 303 DGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEEN 382 (429)
T ss_dssp CTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGT
T ss_pred chhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhH
Confidence 998765 44578999999887643321 1100 0000011235789999999999999999775432
Q ss_pred hH-HHHHHHHc-CCcce
Q 022698 242 PE-YVRRLQEL-KMEDI 256 (293)
Q Consensus 242 ~~-~~~~l~~~-gf~~~ 256 (293)
++ +...+.+. +|+.+
T Consensus 383 e~~v~~~l~~~~~~~~~ 399 (429)
T 1sqg_A 383 SLQIKAFLQRTADAELC 399 (429)
T ss_dssp HHHHHHHHHHCTTCEEC
T ss_pred HHHHHHHHHhCCCCEEe
Confidence 22 34455554 45543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=119.63 Aligned_cols=133 Identities=18% Similarity=0.089 Sum_probs=92.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh--cCC-CCceEEEEcCCCCC-CCCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM--EGV-QEYVTAREGDVRSL-PFGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~~~~~~fD 190 (293)
.+.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.+++++.. .+. .++++++.+|+.+. +...++||
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 165 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDS----VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFD 165 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTT----CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCC----CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCce
Confidence 457999999999999998887643 46999999999999999999754 222 35799999998663 33356899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---Cc---hHHHHHHHHcCCcceEEe
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---HV---PEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~---~~~~~~l~~~gf~~~~~~ 259 (293)
+|+++.+..+..+. .. .....+++++.++|+|||++++.... .. ..+.+.+++. |..+...
T Consensus 166 ~Ii~d~~~~~~~~~--~~-----l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~ 232 (296)
T 1inl_A 166 VIIIDSTDPTAGQG--GH-----LFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRVY 232 (296)
T ss_dssp EEEEEC-----------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEEE
T ss_pred EEEEcCCCcccCch--hh-----hhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-CCceEEE
Confidence 99997653212100 00 01257899999999999999986432 12 2355556665 7766654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.7e-14 Score=118.92 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC---CCC-CCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL---PFG-DNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~-~~~fD 190 (293)
++.+|||||||+|..+..+++.+...+++++|+++|+|+.+++.|+ +..++++++++|+.+. +.. ..+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~~~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhccCCCC
Confidence 3569999999999999999887321122579999999999988776 1125699999999884 432 34799
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHH-cccCCcEEEEEcC------CCchHHHHHHHHc
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVR-VLKPGGVGVVWDL------LHVPEYVRRLQEL 251 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~~------~~~~~~~~~l~~~ 251 (293)
+|+++.. + . +...+++++.+ +|||||++++.+. .....+.+.+++.
T Consensus 155 ~I~~d~~-~--~------------~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~ 207 (236)
T 2bm8_A 155 LIFIDNA-H--A------------NTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAF 207 (236)
T ss_dssp EEEEESS-C--S------------SHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTT
T ss_pred EEEECCc-h--H------------hHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhC
Confidence 9998654 1 1 44578999997 9999999999653 1223556666655
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.6e-14 Score=113.27 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=87.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC---CCCcc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF---GDNYF 189 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~f 189 (293)
..++.+|||+|||. +++|+|+.|++.|+++... ++++.++|+.++++ ++++|
T Consensus 10 ~~~g~~vL~~~~g~--------------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~f 64 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS--------------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSF 64 (176)
T ss_dssp CCTTSEEEEEECTT--------------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCE
T ss_pred CCCCCEEEEecCCc--------------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCE
Confidence 46788999999986 1289999999999988542 37899999998776 67899
Q ss_pred cEEEecchhhhh-ccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-----------CCchHHHHHHHHcCC
Q 022698 190 DVVVSAAFFHTV-GKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-----------LHVPEYVRRLQELKM 253 (293)
Q Consensus 190 D~Iv~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-----------~~~~~~~~~l~~~gf 253 (293)
|+|+++.+++++ + ++..++++++++|||||++++.+. ....++.+.++++||
T Consensus 65 D~V~~~~~l~~~~~------------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 65 DIILSGLVPGSTTL------------HSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp EEEEECCSTTCCCC------------CCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred eEEEECChhhhccc------------CHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 999999999998 6 678999999999999999998432 124678999999999
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=122.70 Aligned_cols=105 Identities=25% Similarity=0.274 Sum_probs=83.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++++|||||||+|.++..+++.. ..+|+|+|.|+ +++.|+++++.+++.+++.++.+|+.++.++ .+||+|||
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-----A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~Dvivs 155 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-----ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVS 155 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-----CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEC
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-----CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEe
Confidence 57899999999999887666542 25899999996 7899999999999999999999999987665 68999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
...-+.+..+ .....++....++|||||.++-
T Consensus 156 E~~~~~l~~e---------~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 156 EWMGYGLLHE---------SMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCCBTTBTTT---------CSHHHHHHHHHHHEEEEEEEES
T ss_pred eccccccccc---------chhhhHHHHHHhhCCCCceECC
Confidence 6443322211 1455677778899999999874
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5e-14 Score=133.94 Aligned_cols=103 Identities=17% Similarity=0.288 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC--CCCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL--PFGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~I 192 (293)
.+.+|||||||.|.++..|++. +++|+|+|+|+.+++.|+.++...+. -+++|.++++.++ ...+++||+|
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~------ga~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~v 138 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK------GATIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVIAALEEGEFDLA 138 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred CCCeEEEECCCCcHHHHHHHhC------CCEEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhccCCCccEE
Confidence 4579999999999999999876 57999999999999999999988763 2499999999876 3456789999
Q ss_pred EecchhhhhccccCcchhhhHHHHH--HHHHHHHHcccCCcEEEEE
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERM--RVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~ 236 (293)
+|..+++|++ ++. ..+..+.+.|+++|..++.
T Consensus 139 ~~~e~~ehv~------------~~~~~~~~~~~~~tl~~~~~~~~~ 172 (569)
T 4azs_A 139 IGLSVFHHIV------------HLHGIDEVKRLLSRLADVTQAVIL 172 (569)
T ss_dssp EEESCHHHHH------------HHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred EECcchhcCC------------CHHHHHHHHHHHHHhccccceeeE
Confidence 9999999998 443 3344566778888766653
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=118.43 Aligned_cols=130 Identities=14% Similarity=0.141 Sum_probs=90.2
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceE-EEEcCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVT-AREGDVRSLP 183 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~-~~~~d~~~~~ 183 (293)
.+++.+....++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.+.++. .++. +...|+..++
T Consensus 75 ~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-g----a~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~ 143 (291)
T 3hp7_A 75 KALAVFNLSVEDMITIDIGASTGGFTDVMLQN-G----AKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAE 143 (291)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCC
T ss_pred HHHHhcCCCccccEEEecCCCccHHHHHHHhC-C----CCEEEEEECCHHHHHHHHHhC------cccceecccCceecc
Confidence 34444432235679999999999999888765 2 359999999999998754431 2232 2234544433
Q ss_pred ---CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE---cCC------------------
Q 022698 184 ---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW---DLL------------------ 239 (293)
Q Consensus 184 ---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~---~~~------------------ 239 (293)
++..+||+|+++..++++. .+++++.++|+|||.+++. .+.
T Consensus 144 ~~~l~~~~fD~v~~d~sf~sl~---------------~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~ 208 (291)
T 3hp7_A 144 PVDFTEGLPSFASIDVSFISLN---------------LILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIH 208 (291)
T ss_dssp GGGCTTCCCSEEEECCSSSCGG---------------GTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHH
T ss_pred hhhCCCCCCCEEEEEeeHhhHH---------------HHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHH
Confidence 2344599999988777554 7899999999999999885 110
Q ss_pred --CchHHHHHHHHcCCcceEEee
Q 022698 240 --HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 --~~~~~~~~l~~~gf~~~~~~~ 260 (293)
...++.+.+.++||....+..
T Consensus 209 ~~~~~~v~~~~~~~Gf~v~~~~~ 231 (291)
T 3hp7_A 209 EKVLETVTAFAVDYGFSVKGLDF 231 (291)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Confidence 013577788899998776643
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=121.72 Aligned_cols=133 Identities=15% Similarity=0.121 Sum_probs=92.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh--cCC-CCceEEEEcCCCCC-CCCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM--EGV-QEYVTAREGDVRSL-PFGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~~~~~~fD 190 (293)
++.+|||||||+|.++..+++..+ ..+++++|+|+.+++.+++++.. .+. .++++++.+|+.+. +..+++||
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 191 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKS----VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYD 191 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCce
Confidence 457999999999999998886543 46999999999999999999765 222 35799999998763 22356899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---CchH---HHHHHHHcCCcceEEee
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---HVPE---YVRRLQELKMEDIRVSE 260 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~---~~~~l~~~gf~~~~~~~ 260 (293)
+|+++.+-...+ .... ...++++++.+.|+|||++++.... ..+. +.+.+++. |..++...
T Consensus 192 vIi~d~~~p~~~---~~~l-----~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~ 258 (321)
T 2pt6_A 192 VIIVDSSDPIGP---AETL-----FNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEYAN 258 (321)
T ss_dssp EEEEECCCSSSG---GGGG-----SSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred EEEECCcCCCCc---chhh-----hHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 999986321111 0000 1158899999999999999984322 2232 33444444 77666543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-13 Score=114.80 Aligned_cols=124 Identities=18% Similarity=0.143 Sum_probs=88.7
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCC--ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGR--GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~--G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
..+++..+..-....+|||||||+ +..+..+++... ++++|+++|.|+.|++.|++++...+ ..++.|+++|+.
T Consensus 66 l~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~---P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~ 141 (277)
T 3giw_A 66 MNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVA---PESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADML 141 (277)
T ss_dssp HHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHC---TTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTT
T ss_pred HHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHC---CCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEeccc
Confidence 334444443112346899999997 445555555432 15799999999999999998876543 246999999998
Q ss_pred CCCC----C--CCccc-----EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 181 SLPF----G--DNYFD-----VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 181 ~~~~----~--~~~fD-----~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
+.+. + .+.|| .|++|.++|+++++ +++..+++++.+.|+|||+|++.+..
T Consensus 142 ~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~---------~~p~~~l~~l~~~L~PGG~Lvls~~~ 202 (277)
T 3giw_A 142 DPASILDAPELRDTLDLTRPVALTVIAIVHFVLDE---------DDAVGIVRRLLEPLPSGSYLAMSIGT 202 (277)
T ss_dssp CHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGG---------GCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred ChhhhhcccccccccCcCCcchHHhhhhHhcCCch---------hhHHHHHHHHHHhCCCCcEEEEEecc
Confidence 7420 1 24455 68899999999811 12678999999999999999996543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-13 Score=117.01 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=77.3
Q ss_pred cccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc
Q 022698 92 FYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY 171 (293)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~ 171 (293)
|+.++...+.+.+.+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++..++. ++
T Consensus 20 ~Gq~fl~~~~i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~------~~~v~~vDi~~~~~~~a~~~~~~~~~-~~ 91 (299)
T 2h1r_A 20 QGQHLLKNPGILDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL------AKKVITIDIDSRMISEVKKRCLYEGY-NN 91 (299)
T ss_dssp ---CEECCHHHHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT------SSEEEEECSCHHHHHHHHHHHHHTTC-CC
T ss_pred cccceecCHHHHHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHHcCC-Cc
Confidence 44444456777888887764 456789999999999999988765 35999999999999999999887765 56
Q ss_pred eEEEEcCCCCCCCCCCcccEEEecchhhhhc
Q 022698 172 VTAREGDVRSLPFGDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 172 v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~ 202 (293)
++++++|+.++++ .+||+|++|+|++...
T Consensus 92 v~~~~~D~~~~~~--~~~D~Vv~n~py~~~~ 120 (299)
T 2h1r_A 92 LEVYEGDAIKTVF--PKFDVCTANIPYKISS 120 (299)
T ss_dssp EEC----CCSSCC--CCCSEEEEECCGGGHH
T ss_pred eEEEECchhhCCc--ccCCEEEEcCCccccc
Confidence 9999999988764 4799999999988654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=117.65 Aligned_cols=97 Identities=28% Similarity=0.358 Sum_probs=80.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++.++ +.+++++|+|+.+++.++++. .++.+...|+.++++++++||+|+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~ 153 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALP----EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAII 153 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT----TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC----CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEE
Confidence 4567999999999999999988764 469999999999999998774 337899999998887788999999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
++.+. ..++++.++|||||.++++...
T Consensus 154 ~~~~~-------------------~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 154 RIYAP-------------------CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp EESCC-------------------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred EeCCh-------------------hhHHHHHHhcCCCcEEEEEEcC
Confidence 86441 2468899999999999986543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=116.80 Aligned_cols=132 Identities=12% Similarity=0.086 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEEcCCCCC-CCCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--GV-QEYVTAREGDVRSL-PFGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--~~-~~~v~~~~~d~~~~-~~~~~~fD 190 (293)
.+.+|||+|||+|..+..+++..+ ..+++++|+++.+++.|++++... +. .++++++.+|+.+. +...++||
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD 150 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPS----VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYD 150 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTT----CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCC----CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCee
Confidence 457999999999999998886533 369999999999999999987542 23 36799999998763 22357899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---Cc---hHHHHHHHHcCCcceEEe
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---HV---PEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~---~~~~~~l~~~gf~~~~~~ 259 (293)
+|+++.+....+ ... . ...++++++.+.|+|||++++.... .. ..+.+.+++. |..+...
T Consensus 151 ~Ii~d~~~~~~~-~~~--l-----~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~ 216 (275)
T 1iy9_A 151 VIMVDSTEPVGP-AVN--L-----FTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPITKLY 216 (275)
T ss_dssp EEEESCSSCCSC-CCC--C-----STTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEE
T ss_pred EEEECCCCCCCc-chh--h-----hHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCeEEE
Confidence 999987653221 000 0 1247899999999999999986432 12 2344555555 7776654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-13 Score=117.64 Aligned_cols=130 Identities=16% Similarity=0.172 Sum_probs=94.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEEEe
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVVVS 194 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~Iv~ 194 (293)
.+|||||||+|.++..+++.++ +.+++++|+++.+++.+++++.... .++++++.+|+.++. .++++||+|++
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p----~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 165 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYP----QSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIR 165 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHST----TCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCC----CcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEE
Confidence 4999999999999999998766 4699999999999999999976542 367999999987642 34578999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC--CCch---HHHHHHHHcCCcceEEee
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL--LHVP---EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~---~~~~~l~~~gf~~~~~~~ 260 (293)
+......... .. ...++++.++++|+|||++++... .... .+.+.|++. |..+.+..
T Consensus 166 D~~~~~~~~~---~L-----~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v-F~~v~~~~ 227 (317)
T 3gjy_A 166 DVFAGAITPQ---NF-----TTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV-FEHVAVIA 227 (317)
T ss_dssp CCSTTSCCCG---GG-----SBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH-CSEEEEEE
T ss_pred CCCCccccch---hh-----hHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH-CCceEEEE
Confidence 7543321100 00 125799999999999999988432 2222 344455444 77777664
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=121.99 Aligned_cols=111 Identities=20% Similarity=0.176 Sum_probs=84.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEEcCCCCC--CCCCCc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--GV-QEYVTAREGDVRSL--PFGDNY 188 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--~~-~~~v~~~~~d~~~~--~~~~~~ 188 (293)
..+.+|||||||+|.++..+++..+ ..+|+++|+|+.+++.|++++... ++ .++++++.+|+.+. ..++++
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~----~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~ 194 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHAS----IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS 194 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCCEEEEECCCccHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCC
Confidence 4567999999999999999887643 469999999999999999998652 33 35799999998763 123578
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
||+|+++.+-...+.+ ......+++++.++|+|||++++.
T Consensus 195 fDlIi~d~~~p~~~~~--------~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 195 YDAVIVDSSDPIGPAK--------ELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEEEECCCCTTSGGG--------GGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEECCCCccCcch--------hhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999997642111100 001368999999999999999984
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.6e-13 Score=108.33 Aligned_cols=141 Identities=14% Similarity=0.141 Sum_probs=88.8
Q ss_pred HHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC
Q 022698 106 MVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG 185 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 185 (293)
+.+...-..++.+|||+|||+|.++..+++. +.+|+|+|+++.. . .+++.++++|+.+.+..
T Consensus 16 i~~~~~~~~~g~~VLDlG~G~G~~s~~la~~------~~~V~gvD~~~~~-----------~-~~~v~~~~~D~~~~~~~ 77 (191)
T 3dou_A 16 LLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL------ARKIISIDLQEME-----------E-IAGVRFIRCDIFKETIF 77 (191)
T ss_dssp HHHHHCCSCTTCEEEEESCTTCHHHHHHTTT------CSEEEEEESSCCC-----------C-CTTCEEEECCTTSSSHH
T ss_pred HHHHcCCCCCCCEEEEEeecCCHHHHHHHHc------CCcEEEEeccccc-----------c-CCCeEEEEccccCHHHH
Confidence 3333333457789999999999999988765 3599999999851 1 13589999999875411
Q ss_pred -------C----CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHcC
Q 022698 186 -------D----NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELK 252 (293)
Q Consensus 186 -------~----~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~g 252 (293)
. ++||+|+|+.+....... ..+...........++.+.++|||||.|++..... .+++...+ +..
T Consensus 78 ~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~-~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l-~~~ 155 (191)
T 3dou_A 78 DDIDRALREEGIEKVDDVVSDAMAKVSGIP-SRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIW-RKN 155 (191)
T ss_dssp HHHHHHHHHHTCSSEEEEEECCCCCCCSCH-HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHH-GGG
T ss_pred HHHHHHhhcccCCcceEEecCCCcCCCCCc-ccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHH-HHh
Confidence 1 489999998653221100 00001111234568888999999999998743322 23455555 445
Q ss_pred CcceEEeeeeccce
Q 022698 253 MEDIRVSERVTAFM 266 (293)
Q Consensus 253 f~~~~~~~~~~~~~ 266 (293)
|..+++.+......
T Consensus 156 F~~v~~~kP~asR~ 169 (191)
T 3dou_A 156 FSSYKISKPPASRG 169 (191)
T ss_dssp EEEEEEECC-----
T ss_pred cCEEEEECCCCccC
Confidence 88888877665543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=118.03 Aligned_cols=126 Identities=10% Similarity=0.123 Sum_probs=94.3
Q ss_pred cccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC
Q 022698 88 AGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG 167 (293)
Q Consensus 88 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~ 167 (293)
...||..+....+.+..++++.+.. .+.+|||+|||+|.+++.+++. ..+|+++|+|+.+++.|++|++.++
T Consensus 188 ~~~F~Q~n~~~~~~l~~~~~~~~~~--~~~~vLDl~cG~G~~~l~la~~------~~~V~gvd~~~~ai~~a~~n~~~ng 259 (369)
T 3bt7_A 188 ENSFTQPNAAMNIQMLEWALDVTKG--SKGDLLELYCGNGNFSLALARN------FDRVLATEIAKPSVAAAQYNIAANH 259 (369)
T ss_dssp TTSCCCSBHHHHHHHHHHHHHHTTT--CCSEEEEESCTTSHHHHHHGGG------SSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred CCCeecCCHHHHHHHHHHHHHHhhc--CCCEEEEccCCCCHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHHcC
Confidence 4445555554556677777776642 2468999999999999988764 3599999999999999999999998
Q ss_pred CCCceEEEEcCCCCCC--CCC--------------CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCc
Q 022698 168 VQEYVTAREGDVRSLP--FGD--------------NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231 (293)
Q Consensus 168 ~~~~v~~~~~d~~~~~--~~~--------------~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 231 (293)
+ ++++|+++|+.+.. ... .+||+|+++||...+. +++.+.|+++|
T Consensus 260 ~-~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~------------------~~~~~~l~~~g 320 (369)
T 3bt7_A 260 I-DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD------------------SETEKMVQAYP 320 (369)
T ss_dssp C-CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCC------------------HHHHHHHTTSS
T ss_pred C-CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccccH------------------HHHHHHHhCCC
Confidence 7 46999999987642 111 3799999998875433 33455667889
Q ss_pred EEEEEcCCC
Q 022698 232 VGVVWDLLH 240 (293)
Q Consensus 232 ~l~~~~~~~ 240 (293)
.++++++..
T Consensus 321 ~ivyvsc~p 329 (369)
T 3bt7_A 321 RILYISCNP 329 (369)
T ss_dssp EEEEEESCH
T ss_pred EEEEEECCH
Confidence 888877654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-14 Score=117.70 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=84.2
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC--ceEEEEcCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE--YVTAREGDVRS 181 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~--~v~~~~~d~~~ 181 (293)
+.+++.+....++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.++++........ ++.+.. ..+
T Consensus 26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g-----~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~--~~~ 98 (232)
T 3opn_A 26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNG-----AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAV--LAD 98 (232)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-----CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCC--GGG
T ss_pred HHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcC-----CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeC--HhH
Confidence 3445555433456799999999999999888761 2499999999999998776543211000 111111 011
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-----C-----------------
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-----L----------------- 239 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-----~----------------- 239 (293)
++...||.+.+..++..+ ..+++++.++|||||.+++... .
T Consensus 99 --~~~~~~d~~~~D~v~~~l---------------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~ 161 (232)
T 3opn_A 99 --FEQGRPSFTSIDVSFISL---------------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQ 161 (232)
T ss_dssp --CCSCCCSEEEECCSSSCG---------------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHH
T ss_pred --cCcCCCCEEEEEEEhhhH---------------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhH
Confidence 111124555544444333 3688999999999999988510 0
Q ss_pred -CchHHHHHHHHcCCcceEEee
Q 022698 240 -HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 -~~~~~~~~l~~~gf~~~~~~~ 260 (293)
..+++.+.++++||+.+.+..
T Consensus 162 ~~~~~l~~~l~~aGf~v~~~~~ 183 (232)
T 3opn_A 162 MTIEKVLKTATQLGFSVKGLTF 183 (232)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEE
Confidence 123577888999999877653
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-13 Score=118.40 Aligned_cols=112 Identities=20% Similarity=0.153 Sum_probs=82.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh--cCC-CCceEEEEcCCCCC-CCCCCcc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM--EGV-QEYVTAREGDVRSL-PFGDNYF 189 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~~~~~~f 189 (293)
..+.+|||||||+|..+..+++..+ ..+++++|+|+.+++.|++++.. .++ .++++++.+|+.+. +..+++|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~f 169 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPS----VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAF 169 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCc
Confidence 3557999999999999998886643 46999999999999999999765 233 36799999998662 2335789
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|+|+++.+....+.. ......+++++.++|+|||++++..
T Consensus 170 D~Ii~d~~~~~~~~~--------~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 170 DVIITDSSDPMGPAE--------SLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEEEEECC-------------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCCCCcch--------hhhHHHHHHHHHhccCCCeEEEEec
Confidence 999998654322100 0123578999999999999999854
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-13 Score=120.72 Aligned_cols=108 Identities=21% Similarity=0.298 Sum_probs=83.1
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCC------CChHHHHHHHHh-hhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceE
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCG------RGILLNAVATQF-KKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVT 173 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G------~G~~~~~l~~~~-~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~ 173 (293)
.+.+.++..+. .++.+||||||| +|..+..+++.+ + +++|+|+|+|+.|. . ..++++
T Consensus 204 ~~Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP----~a~V~GVDiSp~m~--------~--~~~rI~ 267 (419)
T 3sso_A 204 PHYDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFP----RGQIYGLDIMDKSH--------V--DELRIR 267 (419)
T ss_dssp HHHHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCT----TCEEEEEESSCCGG--------G--CBTTEE
T ss_pred HHHHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCC----CCEEEEEECCHHHh--------h--cCCCcE
Confidence 34455555543 346799999999 777777777654 4 46999999999962 1 135699
Q ss_pred EEEcCCCCCCCC------CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 174 AREGDVRSLPFG------DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 174 ~~~~d~~~~~~~------~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|+++|+.++++. +++||+|+++.. ++.. +...+|+++.++|||||++++.+
T Consensus 268 fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~~------------d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 268 TIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HINA------------HVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp EEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCHH------------HHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEEecccccchhhhhhcccCCccEEEECCc-ccch------------hHHHHHHHHHHhcCCCeEEEEEe
Confidence 999999987665 589999999754 4444 78899999999999999999954
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.4e-13 Score=120.51 Aligned_cols=139 Identities=19% Similarity=0.199 Sum_probs=99.9
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+.+++.+++.+.. .++.+|||+|||+|.++..+++.... ..+++|+|+++.+++.| .++.+.++|+
T Consensus 25 ~~l~~~~~~~~~~-~~~~~vLD~gcGtG~~~~~~~~~~~~---~~~i~gvDi~~~~~~~a----------~~~~~~~~D~ 90 (421)
T 2ih2_A 25 PEVVDFMVSLAEA-PRGGRVLEPACAHGPFLRAFREAHGT---AYRFVGVEIDPKALDLP----------PWAEGILADF 90 (421)
T ss_dssp HHHHHHHHHHCCC-CTTCEEEEETCTTCHHHHHHHHHHCS---CSEEEEEESCTTTCCCC----------TTEEEEESCG
T ss_pred HHHHHHHHHhhcc-CCCCEEEECCCCChHHHHHHHHHhCC---CCeEEEEECCHHHHHhC----------CCCcEEeCCh
Confidence 4566777777653 34569999999999999999887521 36999999999988766 3489999999
Q ss_pred CCCCCCCCcccEEEecchhhhhccccC----c-chhhh------------HHHHHHHHHHHHHcccCCcEEEEEcCC---
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYG----H-RTVEA------------AAERMRVLGEMVRVLKPGGVGVVWDLL--- 239 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~----~-~~~~~------------~~~~~~~l~~~~~~LkpgG~l~~~~~~--- 239 (293)
.+.. ..++||+|++||||........ . +.... .+....+++.+.++|+|||.++++...
T Consensus 91 ~~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l 169 (421)
T 2ih2_A 91 LLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWL 169 (421)
T ss_dssp GGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGG
T ss_pred hhcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHh
Confidence 8754 3568999999999975442100 0 00000 002236799999999999998885432
Q ss_pred ---CchHHHHHHHHcCC
Q 022698 240 ---HVPEYVRRLQELKM 253 (293)
Q Consensus 240 ---~~~~~~~~l~~~gf 253 (293)
....+.+.+.+.|+
T Consensus 170 ~~~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 170 VLEDFALLREFLAREGK 186 (421)
T ss_dssp TCGGGHHHHHHHHHHSE
T ss_pred cCccHHHHHHHHHhcCC
Confidence 35678888888887
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-13 Score=121.37 Aligned_cols=131 Identities=18% Similarity=0.128 Sum_probs=90.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEEcCCCCC-CCCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--GV-QEYVTAREGDVRSL-PFGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--~~-~~~v~~~~~d~~~~-~~~~~~fD 190 (293)
.+.+|||||||+|..+..+++..+ ..+++++|+|+.+++.|++++... ++ .++++++.+|+.+. +...++||
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD 183 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHES----VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFD 183 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTT----CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCce
Confidence 457999999999999998887643 469999999999999999997653 22 35799999998763 22357899
Q ss_pred EEEecchhhhhccccCcchhhhHHHH--HHHHHHHHHcccCCcEEEEEcCC---Cch---HHHHHHHHcCCcceEEee
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAER--MRVLGEMVRVLKPGGVGVVWDLL---HVP---EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~---~~~---~~~~~l~~~gf~~~~~~~ 260 (293)
+|+++.+-...+ .... ..+++++.++|+|||++++.... ..+ .+.+.+++. |..++...
T Consensus 184 ~Ii~d~~~~~~~----------~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~v-F~~v~~~~ 250 (314)
T 2b2c_A 184 VIITDSSDPVGP----------AESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYAQ 250 (314)
T ss_dssp EEEECCC-----------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEEE
T ss_pred EEEEcCCCCCCc----------chhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHH-CCcceEEE
Confidence 999976432111 0111 68999999999999999985421 222 233444444 77666543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-13 Score=117.89 Aligned_cols=127 Identities=16% Similarity=0.159 Sum_probs=90.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc--CC--------CCceEEEEcCCCCC-C
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--GV--------QEYVTAREGDVRSL-P 183 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--~~--------~~~v~~~~~d~~~~-~ 183 (293)
++.+|||||||+|..+..+++. + ..+++++|+|+.+++.|++++ .. ++ .++++++.+|+.+. +
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~----~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~ 148 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-D----VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIK 148 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-C----CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-C----CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhc
Confidence 4579999999999999988876 4 469999999999999999998 33 22 36799999998653 2
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHH--HHHHHHHHHHcccCCcEEEEEcC---CCch---HHHHHHHHcCCcc
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAE--RMRVLGEMVRVLKPGGVGVVWDL---LHVP---EYVRRLQELKMED 255 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~---~~~~---~~~~~l~~~gf~~ 255 (293)
. +++||+|+++.+....+ ... ...+++++.++|+|||++++... ...+ .+.+.+++. |..
T Consensus 149 ~-~~~fD~Ii~d~~~~~~~----------~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~ 216 (281)
T 1mjf_A 149 N-NRGFDVIIADSTDPVGP----------AKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDR 216 (281)
T ss_dssp H-CCCEEEEEEECCCCC---------------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSE
T ss_pred c-cCCeeEEEECCCCCCCc----------chhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCc
Confidence 2 56899999987643211 012 25789999999999999988421 1222 233344444 776
Q ss_pred eEEe
Q 022698 256 IRVS 259 (293)
Q Consensus 256 ~~~~ 259 (293)
+...
T Consensus 217 v~~~ 220 (281)
T 1mjf_A 217 VYYY 220 (281)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6654
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=106.57 Aligned_cols=138 Identities=19% Similarity=0.212 Sum_probs=88.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhc-----CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE-EcCCCCCC---
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKT-----GSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR-EGDVRSLP--- 183 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~-----~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~-~~d~~~~~--- 183 (293)
+.++.+|||+|||+|.++..+++..+.. .+..+|+++|+|+.+ .. .++++. .+|+.+.+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHH
Confidence 4567899999999999999999886521 001599999999841 11 347888 88887642
Q ss_pred -----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHcCCcce
Q 022698 184 -----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELKMEDI 256 (293)
Q Consensus 184 -----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~gf~~~ 256 (293)
+++++||+|+|+.+++..... ..+..........+++++.++|+|||.+++..... ..++.+.+.. .|..+
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~v 165 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFR-DLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTE-EFQNV 165 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCH-HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHH-HEEEE
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCc-ccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHH-Hhcce
Confidence 234589999997654432100 00000001112578999999999999999865543 2345555554 37766
Q ss_pred EEeeeecc
Q 022698 257 RVSERVTA 264 (293)
Q Consensus 257 ~~~~~~~~ 264 (293)
...+....
T Consensus 166 ~~~~~~~~ 173 (196)
T 2nyu_A 166 RIIKPEAS 173 (196)
T ss_dssp EEECCC--
T ss_pred EEECCccc
Confidence 66654443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-11 Score=120.11 Aligned_cols=167 Identities=17% Similarity=0.201 Sum_probs=116.3
Q ss_pred CccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhc----------------------------------
Q 022698 95 AVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKT---------------------------------- 140 (293)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~---------------------------------- 140 (293)
..++.+.++..++.... +.++.+|||.+||+|.+++.++......
T Consensus 171 ~apl~e~LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~ 249 (703)
T 3v97_A 171 IAPIKETLAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRAR 249 (703)
T ss_dssp CCSSCHHHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhh
Confidence 34577888888887764 5677899999999999999887653110
Q ss_pred ----CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC--CCCcccEEEecchhhhhccccCcchhhhHH
Q 022698 141 ----GSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF--GDNYFDVVVSAAFFHTVGKEYGHRTVEAAA 214 (293)
Q Consensus 141 ----~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~ 214 (293)
.+..+++|+|+++.|++.|++|+..+|+.+.++|.++|+.++.. ..++||+|++||||..-- +. ..
T Consensus 250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rl---g~-----~~ 321 (703)
T 3v97_A 250 KGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERL---DS-----EP 321 (703)
T ss_dssp HHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC------C-----CH
T ss_pred hccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccc---cc-----hh
Confidence 01248999999999999999999999998889999999988632 234899999999995321 00 11
Q ss_pred HHHHHHH---HHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEeeeeccceecceeeeeec
Q 022698 215 ERMRVLG---EMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 215 ~~~~~l~---~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
+...+++ ++.+.+.|||.++++.. .++ +.+..|.+.-+..+-..|. ..+++.....
T Consensus 322 ~l~~ly~~l~~~lk~~~~g~~~~ilt~--~~~---l~~~~glk~~k~~~l~nG~-l~~~~~~y~~ 380 (703)
T 3v97_A 322 ALIALHSLLGRIMKNQFGGWNLSLFSA--SPD---LLSCLQLRADKQYKAKNGP-LDCVQKNYHV 380 (703)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEES--CHH---HHHTTCCCEEEEEEEEETT-EEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEeC--CHH---HHHHhCCCcccceeeecCC-EEEEEEEEEe
Confidence 3344444 44455668999988753 233 3356777766555555443 3555555443
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.7e-12 Score=110.24 Aligned_cols=104 Identities=17% Similarity=0.231 Sum_probs=83.7
Q ss_pred ccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 022698 89 GNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV 168 (293)
Q Consensus 89 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~ 168 (293)
...++.++-..+.+.+.+++.+. ..++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...
T Consensus 25 ~k~~GQnfL~d~~i~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~------~~~V~aVEid~~li~~a~~~~~~~-- 95 (295)
T 3gru_A 25 KKKLGQCFLIDKNFVNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN------AKKVYVIEIDKSLEPYANKLKELY-- 95 (295)
T ss_dssp -----CCEECCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCGGGHHHHHHHHHHC--
T ss_pred ccccCccccCCHHHHHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc------CCEEEEEECCHHHHHHHHHHhccC--
Confidence 33455555567778888888875 467789999999999999999886 359999999999999999998732
Q ss_pred CCceEEEEcCCCCCCCCCCcccEEEecchhhhhc
Q 022698 169 QEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 169 ~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~ 202 (293)
++++++++|+.++++++.+||+|++|.||+...
T Consensus 96 -~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~is~ 128 (295)
T 3gru_A 96 -NNIEIIWGDALKVDLNKLDFNKVVANLPYQISS 128 (295)
T ss_dssp -SSEEEEESCTTTSCGGGSCCSEEEEECCGGGHH
T ss_pred -CCeEEEECchhhCCcccCCccEEEEeCcccccH
Confidence 469999999998877777899999999987654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-13 Score=118.65 Aligned_cols=135 Identities=19% Similarity=0.160 Sum_probs=93.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh--cC-C-CCceEEEEcCCCCC-CCCCCcc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM--EG-V-QEYVTAREGDVRSL-PFGDNYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~--~~-~-~~~v~~~~~d~~~~-~~~~~~f 189 (293)
.+.+|||||||+|..+..+++..+ ..+++++|+|+.+++.|++++.. .+ . .++++++.+|+.+. +..+++|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 152 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPT----VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERY 152 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTT----CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCC----CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCc
Confidence 457999999999999998887643 46999999999999999998764 12 2 35799999998763 3335789
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC----CCc---hHHHHHHHHcCCcceEEe
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL----LHV---PEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~---~~~~~~l~~~gf~~~~~~ 259 (293)
|+|+++.+.+... .+. .......++++++.++|+|||++++... ... ..+.+.+++. |..+...
T Consensus 153 D~Ii~d~~~~~~~--~~~---~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~ 223 (314)
T 1uir_A 153 DVVIIDLTDPVGE--DNP---ARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRSY 223 (314)
T ss_dssp EEEEEECCCCBST--TCG---GGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEEE
T ss_pred cEEEECCCCcccc--cCc---chhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH-CCceEEE
Confidence 9999986654300 000 0000136899999999999999988421 111 2344444444 7766554
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=113.64 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=93.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--C-CCceEEEEcCCCCC-CCCCCcc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--V-QEYVTAREGDVRSL-PFGDNYF 189 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--~-~~~v~~~~~d~~~~-~~~~~~f 189 (293)
.++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...+ . .++++++.+|+.+. +...++|
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 152 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKS----VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTY 152 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCc
Confidence 3457999999999999998886543 4699999999999999999876432 1 35799999998763 2225789
Q ss_pred cEEEecchhhhhccccCcchhhhHHHH--HHHHHHHHHcccCCcEEEEEcC---CCchH---HHHHHHHcCCcceEEe
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAER--MRVLGEMVRVLKPGGVGVVWDL---LHVPE---YVRRLQELKMEDIRVS 259 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~---~~~~~---~~~~l~~~gf~~~~~~ 259 (293)
|+|+++.+....+ .... ..+++.+.++|+|||++++... ...+. +.+.+++. |..++..
T Consensus 153 D~Ii~d~~~~~~~----------~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~ 219 (283)
T 2i7c_A 153 DVIIVDSSDPIGP----------AETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEYA 219 (283)
T ss_dssp EEEEEECCCTTTG----------GGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEE
T ss_pred eEEEEcCCCCCCc----------chhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH-CCceEEE
Confidence 9999975433221 0022 5899999999999999998643 22222 33444443 7766654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=109.39 Aligned_cols=134 Identities=12% Similarity=0.057 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+.+...+.+.+ .+..+|||||||+|-++..++...+ ..+|+++|+++.+++.+++|+..+|+. ..+...|.
T Consensus 120 D~fY~~i~~~i---~~p~~VLDLGCG~GpLAl~~~~~~p----~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~ 190 (281)
T 3lcv_B 120 DEFYRELFRHL---PRPNTLRDLACGLNPLAAPWMGLPA----ETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADL 190 (281)
T ss_dssp HHHHHHHGGGS---CCCSEEEETTCTTGGGCCTTTTCCT----TCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCT
T ss_pred HHHHHHHHhcc---CCCceeeeeccCccHHHHHHHhhCC----CCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeee
Confidence 33444555555 3466999999999999988876655 579999999999999999999999875 78888998
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC------------CchHHHHH
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------HVPEYVRR 247 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------~~~~~~~~ 247 (293)
...+ +.++||+++++-.+++++ .+.....+ ++...|+|+|+++-.+.. ....+.+.
T Consensus 191 ~~~~-p~~~~DvaL~lkti~~Le----------~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~ 258 (281)
T 3lcv_B 191 LEDR-LDEPADVTLLLKTLPCLE----------TQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQ 258 (281)
T ss_dssp TTSC-CCSCCSEEEETTCHHHHH----------HHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHH
T ss_pred cccC-CCCCcchHHHHHHHHHhh----------hhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHH
Confidence 7744 467899999999999986 11223455 899999999998865441 11245555
Q ss_pred HHHcCCc
Q 022698 248 LQELKME 254 (293)
Q Consensus 248 l~~~gf~ 254 (293)
+.+.|..
T Consensus 259 ~~~~g~~ 265 (281)
T 3lcv_B 259 ARERSCR 265 (281)
T ss_dssp HHHHTCC
T ss_pred HHhcCCc
Confidence 6667773
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-12 Score=118.23 Aligned_cols=136 Identities=21% Similarity=0.183 Sum_probs=98.0
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcC---------CCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTG---------SLGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~---------~~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
..+++.+++.+. ..++.+|||+|||+|.++..+++.+.... ...+++|+|+++.+++.|+.|+...++..
T Consensus 157 ~~v~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~ 235 (445)
T 2okc_A 157 RPLIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT 235 (445)
T ss_dssp HHHHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 446666666664 34567999999999999999988753211 02589999999999999999998887642
Q ss_pred -ceEEEEcCCCCCCCCCCcccEEEecchhhhhccccC---cch--hhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 171 -YVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYG---HRT--VEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 171 -~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++.+.++|....+. ..+||+|++||||........ ... .........+++.+.+.|+|||++.++.
T Consensus 236 ~~~~i~~gD~l~~~~-~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 236 DRSPIVCEDSLEKEP-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp SCCSEEECCTTTSCC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCEeeCCCCCCcc-cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 57889999887653 348999999999976432100 000 0001123578999999999999988754
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-12 Score=117.35 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEEcCCCCCC--CCCCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY-VTAREGDVRSLP--FGDNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~-v~~~~~d~~~~~--~~~~~fD~ 191 (293)
++.+|||++||+|.+++.++++... ..+|+++|+++.+++.+++|++.+++.++ ++++.+|+.++. ...++||+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~g---a~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~ 128 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSC---VEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDY 128 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSC---EEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcE
Confidence 4679999999999999999886431 25899999999999999999999998776 999999986632 11457999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|+++| +. .+..+++.+.+.|+|||++++..
T Consensus 129 V~lDP-~g---------------~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 129 VDLDP-FG---------------TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEECC-SS---------------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECC-Cc---------------CHHHHHHHHHHHhCCCCEEEEEe
Confidence 99987 21 12357888889999999888754
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=111.33 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=86.4
Q ss_pred CCCCCCeEEEEcCCC------ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE-EEcCCCCCCC
Q 022698 112 DWSTVKTALDIGCGR------GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA-REGDVRSLPF 184 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~------G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~-~~~d~~~~~~ 184 (293)
.+.++.+|||+|||+ |. ..+++..+. +.+|+|+|+|+. + +++++ +++|+.++++
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~---~~~V~gvDis~~-v-------------~~v~~~i~gD~~~~~~ 120 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPT---GTLLVDSDLNDF-V-------------SDADSTLIGDCATVHT 120 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCT---TCEEEEEESSCC-B-------------CSSSEEEESCGGGCCC
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCC---CCEEEEEECCCC-C-------------CCCEEEEECccccCCc
Confidence 356778999999955 65 334444432 369999999997 1 23778 9999988765
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCchHHHHHHHHcCCcceEEe
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
. ++||+|+|+...+...... .+..........+++++.++|||||.+++.. .....++.+.+++.||..+++.
T Consensus 121 ~-~~fD~Vvsn~~~~~~g~~~-~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 121 A-NKWDLIISDMYDPRTKHVT-KENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp S-SCEEEEEECCCCCC---CC-SCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEE
T ss_pred c-CcccEEEEcCCcccccccc-ccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEE
Confidence 3 6899999985432211000 0000001134578999999999999999843 3345688889999999887765
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-11 Score=106.93 Aligned_cols=122 Identities=16% Similarity=0.068 Sum_probs=89.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCC---Ccc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGD---NYF 189 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~f 189 (293)
..++.+|||+|||+|..+..+++.+.. ..+|+++|+++.+++.+++|++.+++ .++.++..|+.+++... .+|
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~---~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~f 175 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKN---QGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEV 175 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGGTTE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCccccccCCC
Confidence 467789999999999999999987643 35999999999999999999999987 45999999998764321 579
Q ss_pred cEEEecchhhhhcc-----ccCc-------chhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 190 DVVVSAAFFHTVGK-----EYGH-------RTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 190 D~Iv~~~~~~~~~~-----~~~~-------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
|.|++++|+..... +... +...-.....++++.+.++|+ ||+|++..+.
T Consensus 176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 99999988643221 1000 001111223457888888887 9998886654
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=116.26 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=92.0
Q ss_pred cccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc---
Q 022698 90 NFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--- 166 (293)
Q Consensus 90 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--- 166 (293)
.||........++...++... ++.+|||+|||+|.+++.+++..+ ..+|+++|+++.+++.+++|++.+
T Consensus 26 ~F~np~~~~nr~l~~~~l~~~----~~~~VLDl~aGtG~~~l~~a~~~~----~~~V~avDi~~~av~~a~~N~~~n~~~ 97 (378)
T 2dul_A 26 VFYNPRMALNRDIVVVLLNIL----NPKIVLDALSATGIRGIRFALETP----AEEVWLNDISEDAYELMKRNVMLNFDG 97 (378)
T ss_dssp CCCCGGGHHHHHHHHHHHHHH----CCSEEEESSCTTSHHHHHHHHHSS----CSEEEEEESCHHHHHHHHHHHHHHCCS
T ss_pred ceeCCchHHHHHHHHHHHHHc----CCCEEEECCCchhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHHhccc
Confidence 344333334444444444443 467999999999999999998764 358999999999999999999998
Q ss_pred ------------CCCCceEEEEcCCCCCCC-CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEE
Q 022698 167 ------------GVQEYVTAREGDVRSLPF-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVG 233 (293)
Q Consensus 167 ------------~~~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 233 (293)
++.+ +++.++|+.++.. ..++||+|+++|+.. ...++..+.+.|+|||++
T Consensus 98 ~~~~~~~~~~~~gl~~-i~v~~~Da~~~~~~~~~~fD~I~lDP~~~----------------~~~~l~~a~~~lk~gG~l 160 (378)
T 2dul_A 98 ELRESKGRAILKGEKT-IVINHDDANRLMAERHRYFHFIDLDPFGS----------------PMEFLDTALRSAKRRGIL 160 (378)
T ss_dssp CCEECSSEEEEESSSE-EEEEESCHHHHHHHSTTCEEEEEECCSSC----------------CHHHHHHHHHHEEEEEEE
T ss_pred ccccccccccccCCCc-eEEEcCcHHHHHHhccCCCCEEEeCCCCC----------------HHHHHHHHHHhcCCCCEE
Confidence 7644 9999999876421 135799999876431 246788888999999988
Q ss_pred EEEc
Q 022698 234 VVWD 237 (293)
Q Consensus 234 ~~~~ 237 (293)
++..
T Consensus 161 ~vt~ 164 (378)
T 2dul_A 161 GVTA 164 (378)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8753
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-11 Score=102.97 Aligned_cols=100 Identities=8% Similarity=0.146 Sum_probs=78.5
Q ss_pred ccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 91 FFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
.|+.++.....+.+.+++.+. ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++... +
T Consensus 7 ~~gQ~fl~d~~~~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~---~ 76 (244)
T 1qam_A 7 KHSQNFITSKHNIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQR------CNFVTAIEIDHKLCKTTENKLVDH---D 76 (244)
T ss_dssp ---CCBCCCHHHHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHTTTC---C
T ss_pred cCCccccCCHHHHHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHc------CCeEEEEECCHHHHHHHHHhhccC---C
Confidence 344555567778888887774 456789999999999999999876 359999999999999999987642 4
Q ss_pred ceEEEEcCCCCCCCCC-CcccEEEecchhhhh
Q 022698 171 YVTAREGDVRSLPFGD-NYFDVVVSAAFFHTV 201 (293)
Q Consensus 171 ~v~~~~~d~~~~~~~~-~~fD~Iv~~~~~~~~ 201 (293)
+++++++|+.++++++ ..| .|++|+||+..
T Consensus 77 ~v~~~~~D~~~~~~~~~~~~-~vv~nlPy~~~ 107 (244)
T 1qam_A 77 NFQVLNKDILQFKFPKNQSY-KIFGNIPYNIS 107 (244)
T ss_dssp SEEEECCCGGGCCCCSSCCC-EEEEECCGGGH
T ss_pred CeEEEEChHHhCCcccCCCe-EEEEeCCcccC
Confidence 6999999999887653 345 68899998753
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.33 E-value=6e-14 Score=119.42 Aligned_cols=130 Identities=16% Similarity=0.169 Sum_probs=90.0
Q ss_pred ccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q 022698 96 VPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~ 175 (293)
+.......+.+++.+. ..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++... .++++++
T Consensus 11 fl~~~~~~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~------~~~v~~id~~~~~~~~a~~~~~~---~~~v~~~ 80 (245)
T 1yub_A 11 FLTSEKVLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKI------SKQVTSIELDSHLFNLSSEKLKL---NTRVTLI 80 (245)
T ss_dssp BCCCTTTHHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHH------SSEEEESSSSCSSSSSSSCTTTT---CSEEEEC
T ss_pred CCCCHHHHHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHh------CCeEEEEECCHHHHHHHHHHhcc---CCceEEE
Confidence 3344556677777764 456779999999999999999876 35999999999999988877652 3569999
Q ss_pred EcCCCCCCCCC-CcccEEEecchhhhhccccCcchhhhHHHHHHHH----HHHHHcccCCcEEEEEc
Q 022698 176 EGDVRSLPFGD-NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVL----GEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 176 ~~d~~~~~~~~-~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~LkpgG~l~~~~ 237 (293)
++|+.+++++. ++| .|++|+||+...... .............+ +.+.++|+|||.+.++.
T Consensus 81 ~~D~~~~~~~~~~~f-~vv~n~Py~~~~~~~-~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 81 HQDILQFQFPNKQRY-KIVGNIPYHLSTQII-KKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp CSCCTTTTCCCSSEE-EEEEECCSSSCHHHH-HHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred ECChhhcCcccCCCc-EEEEeCCccccHHHH-HHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 99999887653 689 899999886532000 00000000011123 56888999999876643
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-11 Score=106.00 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=78.8
Q ss_pred cccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc
Q 022698 92 FYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY 171 (293)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~ 171 (293)
|+.++-..+.+.+.+++.+. ..++.+|||||||+|.++..+++. +.+|+++|+|+.+++.+++++.. .++
T Consensus 7 ~GQnFL~d~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~------~~~V~avEid~~~~~~~~~~~~~---~~~ 76 (255)
T 3tqs_A 7 FGQHFLHDSFVLQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTE------CDNLALVEIDRDLVAFLQKKYNQ---QKN 76 (255)
T ss_dssp --CCEECCHHHHHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTT------SSEEEEEECCHHHHHHHHHHHTT---CTT
T ss_pred CCcccccCHHHHHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHhh---CCC
Confidence 34445566778888888875 466789999999999999988865 35999999999999999998765 256
Q ss_pred eEEEEcCCCCCCCC----CCcccEEEecchhhhh
Q 022698 172 VTAREGDVRSLPFG----DNYFDVVVSAAFFHTV 201 (293)
Q Consensus 172 v~~~~~d~~~~~~~----~~~fD~Iv~~~~~~~~ 201 (293)
++++++|+.+++++ .++|| |++|.||+..
T Consensus 77 v~~i~~D~~~~~~~~~~~~~~~~-vv~NlPY~is 109 (255)
T 3tqs_A 77 ITIYQNDALQFDFSSVKTDKPLR-VVGNLPYNIS 109 (255)
T ss_dssp EEEEESCTTTCCGGGSCCSSCEE-EEEECCHHHH
T ss_pred cEEEEcchHhCCHHHhccCCCeE-EEecCCcccC
Confidence 99999999987653 24688 9999998754
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=102.30 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|-++..+. + ..+++|+|||+.+++.+++++..++. +..+..+|....+. .++||+|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~----~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~-~~~~DvvL 173 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---G----IASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPP-AEAGDLAL 173 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---T----CSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCC-CCBCSEEE
T ss_pred CCCCeEEEecCCccHHHHHhc---c----CCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCC-CCCcchHH
Confidence 456799999999999998776 3 57999999999999999999988874 38899999987654 45899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++-.+++++. ......+ ++...|+++|+++-..
T Consensus 174 llk~lh~LE~----------q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 174 IFKLLPLLER----------EQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp EESCHHHHHH----------HSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HHHHHHHhhh----------hchhhHH-HHHHHhcCCCEEEEcC
Confidence 9988888861 1223344 7777999999887655
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-11 Score=106.86 Aligned_cols=100 Identities=17% Similarity=0.097 Sum_probs=81.7
Q ss_pred ccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 91 FFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
.|+.++-..+.+.+.+++.+. ..++ +|||||||+|.++..+++. +.+|+++|+|+.+++.+++++.. .
T Consensus 24 ~~GQnfL~d~~i~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~------~~~V~avEid~~~~~~l~~~~~~----~ 91 (271)
T 3fut_A 24 RFGQNFLVSEAHLRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEA------GAEVTAIEKDLRLRPVLEETLSG----L 91 (271)
T ss_dssp TSSCCEECCHHHHHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHT------TCCEEEEESCGGGHHHHHHHTTT----S
T ss_pred cCCccccCCHHHHHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHc------CCEEEEEECCHHHHHHHHHhcCC----C
Confidence 355555567778888888875 4566 9999999999999999876 35899999999999999988762 4
Q ss_pred ceEEEEcCCCCCCCCC-CcccEEEecchhhhhc
Q 022698 171 YVTAREGDVRSLPFGD-NYFDVVVSAAFFHTVG 202 (293)
Q Consensus 171 ~v~~~~~d~~~~~~~~-~~fD~Iv~~~~~~~~~ 202 (293)
+++++++|+.++++++ ..+|.|++|.||+...
T Consensus 92 ~v~vi~~D~l~~~~~~~~~~~~iv~NlPy~iss 124 (271)
T 3fut_A 92 PVRLVFQDALLYPWEEVPQGSLLVANLPYHIAT 124 (271)
T ss_dssp SEEEEESCGGGSCGGGSCTTEEEEEEECSSCCH
T ss_pred CEEEEECChhhCChhhccCccEEEecCcccccH
Confidence 6999999999877643 3699999999998654
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-12 Score=111.78 Aligned_cols=116 Identities=20% Similarity=0.129 Sum_probs=75.4
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH-hcCCCCceEEE--EcCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK-MEGVQEYVTAR--EGDVRS 181 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~-~~~~~~~v~~~--~~d~~~ 181 (293)
++.+. ....++.+|||+|||+|.++..+++. .+|+|+|+|+ ++..++++.. ......++.++ ++|+.+
T Consensus 73 ~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-------~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~ 143 (276)
T 2wa2_A 73 WIDER-GGVELKGTVVDLGCGRGSWSYYAASQ-------PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTK 143 (276)
T ss_dssp HHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS-------TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG
T ss_pred HHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc-------CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhh
Confidence 34444 23456789999999999999888765 2899999998 5332221110 01111258899 999988
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCc--EEEEEc
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG--VGVVWD 237 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~ 237 (293)
++ +++||+|+|+.. +.... ... +......+++.+.++||||| .+++..
T Consensus 144 l~--~~~fD~Vvsd~~-~~~~~----~~~-d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 144 ME--PFQADTVLCDIG-ESNPT----AAV-EASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp CC--CCCCSEEEECCC-CCCSC----HHH-HHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CC--CCCcCEEEECCC-cCCCc----hhh-hHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 65 678999999866 33210 000 00011237899999999999 888743
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-12 Score=110.79 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=75.0
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH-hcCCCCceEEE--EcCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK-MEGVQEYVTAR--EGDVRS 181 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~-~~~~~~~v~~~--~~d~~~ 181 (293)
++.+. ....++.+|||+|||+|.++..+++. .+|+|+|+|+ ++..++++.. ......++.++ ++|+.+
T Consensus 65 ~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-------~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~ 135 (265)
T 2oxt_A 65 WMEER-GYVELTGRVVDLGCGRGGWSYYAASR-------PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHT 135 (265)
T ss_dssp HHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS-------TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTT
T ss_pred HHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc-------CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhH
Confidence 34444 33456789999999999999888765 2899999998 4322211100 00011158888 999988
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCc--EEEEEc
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG--VGVVWD 237 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~ 237 (293)
++ +++||+|+|+.. +.... .... ......+++.+.++|+||| .+++-.
T Consensus 136 l~--~~~fD~V~sd~~-~~~~~----~~~d-~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 136 LP--VERTDVIMCDVG-ESSPK----WSVE-SERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp SC--CCCCSEEEECCC-CCCSC----HHHH-HHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CC--CCCCcEEEEeCc-ccCCc----cchh-HHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 65 678999999866 33220 0000 0011237899999999999 888733
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-12 Score=109.86 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEEcCCCCCCCCCCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--GV-QEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
.+.+|||||||+|..+..+++. + .+++++|+++.+++.|++++... +. .++++++.+|..+.. ++||+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-----~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~ 142 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-----THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDL 142 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-----CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCE
Confidence 4579999999999999887765 3 49999999999999998876431 11 357999999998754 78999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|+++. . ++..+++.+.+.|+|||++++.
T Consensus 143 Ii~d~-----~------------dp~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 143 IFCLQ-----E------------PDIHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp EEESS-----C------------CCHHHHHHHHTTEEEEEEEEEE
T ss_pred EEECC-----C------------ChHHHHHHHHHhcCCCcEEEEE
Confidence 99973 1 2334899999999999999884
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.5e-11 Score=113.43 Aligned_cols=148 Identities=14% Similarity=0.138 Sum_probs=103.4
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCC--------------CcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGS--------------LGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~--------------~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
.+++.+++.+. ..++.+|+|.|||+|.++..+++.+...+. ..+++|+|+++.+++.|+.|+...
T Consensus 156 ~iv~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~ 234 (541)
T 2ar0_A 156 PLIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH 234 (541)
T ss_dssp HHHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHh
Confidence 35555666554 345679999999999999999887653221 137999999999999999998887
Q ss_pred CCCC----ceEEEEcCCCCCC-CCCCcccEEEecchhhhhccc-----cCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 167 GVQE----YVTAREGDVRSLP-FGDNYFDVVVSAAFFHTVGKE-----YGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 167 ~~~~----~v~~~~~d~~~~~-~~~~~fD~Iv~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+... ++.+.++|....+ ...++||+|++||||...... ++.+. ......++..+.+.|+|||++.++
T Consensus 235 gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~---~~~~~~Fl~~~l~~Lk~gGr~a~V 311 (541)
T 2ar0_A 235 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPT---SNKQLCFMQHIIETLHPGGRAAVV 311 (541)
T ss_dssp TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCC---SCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCC---CchHHHHHHHHHHHhCCCCEEEEE
Confidence 7643 2678889987643 235689999999999764321 11110 112347899999999999998875
Q ss_pred cCC-----C--chHHHHHHHHcC
Q 022698 237 DLL-----H--VPEYVRRLQELK 252 (293)
Q Consensus 237 ~~~-----~--~~~~~~~l~~~g 252 (293)
... . ...+++.|.+.+
T Consensus 312 ~p~~~L~~~~~~~~iR~~L~~~~ 334 (541)
T 2ar0_A 312 VPDNVLFEGGKGTDIRRDLMDKC 334 (541)
T ss_dssp EEHHHHHCCTHHHHHHHHHHHHE
T ss_pred ecCcceecCcHHHHHHHHHhhcC
Confidence 421 1 234666665554
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.6e-11 Score=101.57 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=80.8
Q ss_pred cccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC
Q 022698 90 NFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ 169 (293)
Q Consensus 90 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~ 169 (293)
..|+.++-....+.+.+++.+. ..++.+|||||||+|.++..+++..+.. +.+|+++|+|+.+++.++++. .
T Consensus 18 k~~GQ~fL~d~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~--~~~V~avDid~~~l~~a~~~~-----~ 89 (279)
T 3uzu_A 18 KRFGQNFLVDHGVIDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATP--GSPLHAVELDRDLIGRLEQRF-----G 89 (279)
T ss_dssp CCCSCCEECCHHHHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBT--TBCEEEEECCHHHHHHHHHHH-----G
T ss_pred ccCCccccCCHHHHHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCc--CCeEEEEECCHHHHHHHHHhc-----C
Confidence 3456666677778888888875 4567899999999999999999875310 124999999999999999883 2
Q ss_pred CceEEEEcCCCCCCCCCC------cccEEEecchhhhhc
Q 022698 170 EYVTAREGDVRSLPFGDN------YFDVVVSAAFFHTVG 202 (293)
Q Consensus 170 ~~v~~~~~d~~~~~~~~~------~fD~Iv~~~~~~~~~ 202 (293)
++++++++|+.++++++- ..+.|++|.||+...
T Consensus 90 ~~v~~i~~D~~~~~~~~~~~~~~~~~~~vv~NlPY~iss 128 (279)
T 3uzu_A 90 ELLELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNISS 128 (279)
T ss_dssp GGEEEEESCGGGCCGGGGSCSSSSCCEEEEEECCHHHHH
T ss_pred CCcEEEECChhcCChhHhcccccCCceEEEEccCccccH
Confidence 569999999998765321 345899999987543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.9e-11 Score=104.00 Aligned_cols=106 Identities=21% Similarity=0.165 Sum_probs=70.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeC----CHHHHHHHHHHHHhcCCCCceEEEEc-CCCCCCCCCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDC----KKRTTLSTLRTAKMEGVQEYVTAREG-DVRSLPFGDN 187 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDi----s~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~ 187 (293)
..++.+|||+|||+|.++..+++. .+|+++|+ ++.+++.+. .+..+ .+++.+.++ |+..++ ..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~-------~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~--~~ 147 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL-------KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP--PE 147 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS-------TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC--CC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc-------CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC--cC
Confidence 456789999999999999888765 27999999 554332111 11111 145899998 888764 46
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+||+|+|+.+.+ .. .... +......+++.+.++|||||.+++-
T Consensus 148 ~fD~V~sd~~~~-~g----~~~~-d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 148 RCDTLLCDIGES-SP----NPTV-EAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CCSEEEECCCCC-CS----SHHH-HHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCEEEECCccc-cC----cchh-hHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 899999986543 11 0000 0011125788899999999988873
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.3e-11 Score=111.12 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCC-----------CcEEEEEeCCHHHHHHHHHHHHhcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGS-----------LGRVVGLDCKKRTTLSTLRTAKMEGV 168 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~-----------~~~v~~vDis~~~l~~a~~~~~~~~~ 168 (293)
..+++.+++.+.. .+ .+|+|.+||||.+...+++.+...+. ...++|+|+++.++..|+.|+...++
T Consensus 231 ~~Vv~lmv~ll~p-~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi 308 (544)
T 3khk_A 231 KSIVTLIVEMLEP-YK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI 308 (544)
T ss_dssp HHHHHHHHHHHCC-CS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhc-CC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC
Confidence 4566666666643 33 39999999999999988766542110 25899999999999999999998887
Q ss_pred CCceEEEEcCCCCCC-CCCCcccEEEecchhhhhc--cc---------cC--------cchhhhHHHHHHHHHHHHHccc
Q 022698 169 QEYVTAREGDVRSLP-FGDNYFDVVVSAAFFHTVG--KE---------YG--------HRTVEAAAERMRVLGEMVRVLK 228 (293)
Q Consensus 169 ~~~v~~~~~d~~~~~-~~~~~fD~Iv~~~~~~~~~--~~---------~~--------~~~~~~~~~~~~~l~~~~~~Lk 228 (293)
..++.+.++|....+ ....+||+|++||||.... .+ .+ .++.. .....++..+.+.|+
T Consensus 309 ~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~--~~~~~Fl~~~l~~Lk 386 (544)
T 3khk_A 309 DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTG--NANFAWMLHMLYHLA 386 (544)
T ss_dssp CCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTT--CTHHHHHHHHHHTEE
T ss_pred CcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCc--chhHHHHHHHHHHhc
Confidence 655555788876544 3457899999999997421 00 11 11111 112368999999999
Q ss_pred CCcEEEEEcCC--------CchHHHHHHHHcCC
Q 022698 229 PGGVGVVWDLL--------HVPEYVRRLQELKM 253 (293)
Q Consensus 229 pgG~l~~~~~~--------~~~~~~~~l~~~gf 253 (293)
|||++.++-.. ....+++.|.+.+.
T Consensus 387 ~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~ 419 (544)
T 3khk_A 387 PTGSMALLLANGSMSSNTNNEGEIRKTLVEQDL 419 (544)
T ss_dssp EEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTC
T ss_pred cCceEEEEecchhhhcCcchHHHHHHHHHhCCc
Confidence 99998775321 22467777777764
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.5e-10 Score=105.58 Aligned_cols=150 Identities=17% Similarity=0.040 Sum_probs=104.8
Q ss_pred HHHHHHHHhcCC---CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEE
Q 022698 101 DMAQRMVGSVND---WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTARE 176 (293)
Q Consensus 101 ~~~~~l~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~ 176 (293)
.+++.+++.+.. ..++.+|+|.+||+|.+...+++.+...+ ...++|+|+++.++..|+.|+...++. +++.+.+
T Consensus 204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~-~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~ 282 (542)
T 3lkd_A 204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQ-TVVYFGQELNTSTYNLARMNMILHGVPIENQFLHN 282 (542)
T ss_dssp HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhcc-CceEEEEECcHHHHHHHHHHHHHcCCCcCccceEe
Confidence 345555554432 23567999999999999999888764221 468999999999999999999888875 4688999
Q ss_pred cCCCCC--C-CCCCcccEEEecchhhhhcc-c-----------cC-cchhhhHHHHHHHHHHHHHccc-CCcEEEEEcCC
Q 022698 177 GDVRSL--P-FGDNYFDVVVSAAFFHTVGK-E-----------YG-HRTVEAAAERMRVLGEMVRVLK-PGGVGVVWDLL 239 (293)
Q Consensus 177 ~d~~~~--~-~~~~~fD~Iv~~~~~~~~~~-~-----------~~-~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~ 239 (293)
+|.... | ....+||+|++||||..-.. . .+ .++... .-..++..+.+.|+ |||++.++-..
T Consensus 283 gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~--~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 283 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSK--ADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp SCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTC--CHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred cceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCch--hhHHHHHHHHHHhCCCceeEEEEecc
Confidence 998765 3 34578999999999963210 0 01 111110 11358999999999 99998774322
Q ss_pred -----C--chHHHHHHHHcCC
Q 022698 240 -----H--VPEYVRRLQELKM 253 (293)
Q Consensus 240 -----~--~~~~~~~l~~~gf 253 (293)
. ...+++.|.+.+.
T Consensus 361 g~Lf~~~~~~~iRk~Lle~~~ 381 (542)
T 3lkd_A 361 GVLFRGNAEGTIRKALLEEGA 381 (542)
T ss_dssp HHHHCCTHHHHHHHHHHHTTC
T ss_pred hHhhCCchhHHHHHHHHhCCc
Confidence 1 2457777777654
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=101.40 Aligned_cols=90 Identities=16% Similarity=0.099 Sum_probs=72.5
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+++.+. ..++.+|||+|||+|..+..+++.++ +.+|+|+|+|+.|++.|+++++.++ +++.++++|+.+
T Consensus 14 Ll~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~----~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~ 86 (301)
T 1m6y_A 14 MVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCP----GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYRE 86 (301)
T ss_dssp THHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCT----TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGG
T ss_pred HHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHH
Confidence 4455555554 45678999999999999999998865 3699999999999999999998876 569999999887
Q ss_pred CC--CC---CCcccEEEecchh
Q 022698 182 LP--FG---DNYFDVVVSAAFF 198 (293)
Q Consensus 182 ~~--~~---~~~fD~Iv~~~~~ 198 (293)
++ +. .++||.|++++++
T Consensus 87 l~~~l~~~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 87 ADFLLKTLGIEKVDGILMDLGV 108 (301)
T ss_dssp HHHHHHHTTCSCEEEEEEECSC
T ss_pred HHHHHHhcCCCCCCEEEEcCcc
Confidence 64 11 1579999987654
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-11 Score=104.23 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=67.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCH-------HHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKK-------RTTLSTLRTAKMEGVQEYVTAREGDVRSL-P- 183 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~-------~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~- 183 (293)
..++.+|||+|||+|..+..+++. +.+|+++|+|+ .+++.+++|++.+++.++++++++|+.++ +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~------g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~ 154 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL------GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPA 154 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT------TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh------CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHh
Confidence 345679999999999999999875 35899999999 99999999988877656699999999774 2
Q ss_pred CCC--CcccEEEecchhhhh
Q 022698 184 FGD--NYFDVVVSAAFFHTV 201 (293)
Q Consensus 184 ~~~--~~fD~Iv~~~~~~~~ 201 (293)
+++ ++||+|+++|++.+.
T Consensus 155 ~~~~~~~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 155 LVKTQGKPDIVYLDPMYPER 174 (258)
T ss_dssp HHHHHCCCSEEEECCCC---
T ss_pred hhccCCCccEEEECCCCCCc
Confidence 333 689999999988653
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.9e-10 Score=95.30 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=77.3
Q ss_pred ccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 91 FFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
.|+.++-..+.+.+.+++.+. ..++.+|||||||+|.++..+++. + ..+++++|+|+.+++.++++ . ..
T Consensus 8 ~~GQnfl~d~~i~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~----~~~v~avEid~~~~~~~~~~-~----~~ 76 (249)
T 3ftd_A 8 SFGQHLLVSEGVLKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-P----LKKLYVIELDREMVENLKSI-G----DE 76 (249)
T ss_dssp CCCSSCEECHHHHHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-C----CSEEEEECCCHHHHHHHTTS-C----CT
T ss_pred cccccccCCHHHHHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-C----CCeEEEEECCHHHHHHHHhc-c----CC
Confidence 345555566778888888875 456789999999999999988765 1 25999999999999999877 2 24
Q ss_pred ceEEEEcCCCCCCCCCC-cccEEEecchhhhh
Q 022698 171 YVTAREGDVRSLPFGDN-YFDVVVSAAFFHTV 201 (293)
Q Consensus 171 ~v~~~~~d~~~~~~~~~-~fD~Iv~~~~~~~~ 201 (293)
+++++++|+.++++++. ....|++|+||+..
T Consensus 77 ~v~~i~~D~~~~~~~~~~~~~~vv~NlPy~i~ 108 (249)
T 3ftd_A 77 RLEVINEDASKFPFCSLGKELKVVGNLPYNVA 108 (249)
T ss_dssp TEEEECSCTTTCCGGGSCSSEEEEEECCTTTH
T ss_pred CeEEEEcchhhCChhHccCCcEEEEECchhcc
Confidence 69999999998775431 13489999998754
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-10 Score=103.58 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=66.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc--CCCCceEEEEcCCCCC-CC-CCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--GVQEYVTAREGDVRSL-PF-GDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--~~~~~v~~~~~d~~~~-~~-~~~~fD 190 (293)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|++|++.+ ++ ++++++++|+.+. +. .+++||
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~------g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fD 165 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK------ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPD 165 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT------CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCS
T ss_pred CCCEEEEeCCCchHHHHHHHhc------CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCce
Confidence 4689999999999999888765 359999999999999999999988 77 6799999999874 21 235799
Q ss_pred EEEecchhhh
Q 022698 191 VVVSAAFFHT 200 (293)
Q Consensus 191 ~Iv~~~~~~~ 200 (293)
+|+++||+..
T Consensus 166 vV~lDPPrr~ 175 (410)
T 3ll7_A 166 YIYVDPARRS 175 (410)
T ss_dssp EEEECCEEC-
T ss_pred EEEECCCCcC
Confidence 9999999865
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-09 Score=105.05 Aligned_cols=138 Identities=14% Similarity=0.039 Sum_probs=87.9
Q ss_pred hHHHHHHHHHh----cC-CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHH--HHHHHhcCCC--
Q 022698 99 HYDMAQRMVGS----VN-DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLST--LRTAKMEGVQ-- 169 (293)
Q Consensus 99 ~~~~~~~l~~~----~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a--~~~~~~~~~~-- 169 (293)
...+++.++.. +. ...++.+|||.|||+|.++..+++.++... ..+++|+|+++.+++.| +.|+..+...
T Consensus 300 P~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~-~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG 378 (878)
T 3s1s_A 300 DIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVM-PRQIWANDIETLFLELLSIRLGLLFPQLVSS 378 (878)
T ss_dssp CHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCC-GGGEEEECSCGGGHHHHHHHHHTTSTTTCBT
T ss_pred CHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccC-CCeEEEEECCHHHHHHHHHHHHHHHhhhhcC
Confidence 34455555544 22 234567999999999999999988764211 25899999999999999 6665542221
Q ss_pred -CceEEEEcCCCCCC-CCCCcccEEEecchhhhhccccCc-chhh----------------hHHHHHHHHHHHHHcccCC
Q 022698 170 -EYVTAREGDVRSLP-FGDNYFDVVVSAAFFHTVGKEYGH-RTVE----------------AAAERMRVLGEMVRVLKPG 230 (293)
Q Consensus 170 -~~v~~~~~d~~~~~-~~~~~fD~Iv~~~~~~~~~~~~~~-~~~~----------------~~~~~~~~l~~~~~~Lkpg 230 (293)
....+...|..... ...++||+|++||||......... .... ..+-...++..+.+.|+||
T Consensus 379 i~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpG 458 (878)
T 3s1s_A 379 NNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDG 458 (878)
T ss_dssp TBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTT
T ss_pred CCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCC
Confidence 12345556665532 235689999999999532110000 0000 0012345888999999999
Q ss_pred cEEEEEc
Q 022698 231 GVGVVWD 237 (293)
Q Consensus 231 G~l~~~~ 237 (293)
|++.++-
T Consensus 459 GrLAfIl 465 (878)
T 3s1s_A 459 TVISAIM 465 (878)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 9988854
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3.3e-10 Score=96.49 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=71.0
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+.+.+++.+. ..++.+|||||||+|.++. +. ..+ ..+|+++|+++.+++.++++.... ++++++++
T Consensus 5 ~d~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~----~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~ 74 (252)
T 1qyr_A 5 NDQFVIDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GER----LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQ 74 (252)
T ss_dssp CCHHHHHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTT----CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECS
T ss_pred CCHHHHHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCC----CCeEEEEECCHHHHHHHHHHhccC---CceEEEEC
Confidence 44567777777764 4567899999999999999 54 321 123999999999999999876542 46999999
Q ss_pred CCCCCCCCC-----CcccEEEecchhhhh
Q 022698 178 DVRSLPFGD-----NYFDVVVSAAFFHTV 201 (293)
Q Consensus 178 d~~~~~~~~-----~~fD~Iv~~~~~~~~ 201 (293)
|+.++++++ +..|.|++|.||+..
T Consensus 75 D~~~~~~~~~~~~~~~~~~vvsNlPY~i~ 103 (252)
T 1qyr_A 75 DAMTFNFGELAEKMGQPLRVFGNLPYNIS 103 (252)
T ss_dssp CGGGCCHHHHHHHHTSCEEEEEECCTTTH
T ss_pred chhhCCHHHhhcccCCceEEEECCCCCcc
Confidence 998876432 235799999998753
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-09 Score=96.06 Aligned_cols=125 Identities=14% Similarity=0.025 Sum_probs=91.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-----CceEEEEcCCCCCC-CC
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-----EYVTAREGDVRSLP-FG 185 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-----~~v~~~~~d~~~~~-~~ 185 (293)
...++.+|||+++|.|.-+.+++.... +..++++|+|+..+..+++|+++.+.. .++.+...|...++ ..
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~~----~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~ 220 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTGC----CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE 220 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTTC----EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcC----CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc
Confidence 457888999999999999999987643 458999999999999999999877642 46888888887754 34
Q ss_pred CCcccEEEecchhhhh-----ccccCcc---hhhh----HHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 186 DNYFDVVVSAAFFHTV-----GKEYGHR---TVEA----AAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~-----~~~~~~~---~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
.++||.|++..|.... ..++... .... ..-..+++..+.++|||||+|+.+.+..
T Consensus 221 ~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 221 GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 5789999998775321 1122111 1111 1123468899999999999999876653
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=8e-09 Score=98.12 Aligned_cols=107 Identities=23% Similarity=0.262 Sum_probs=79.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
...|||+|||+|-+....++.....+...+|+|+|-|+. ...+++..+.+++.++|+++.+|+++...+ .++|+|||=
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE 435 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE 435 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence 357999999999997666665544333358999999985 556888889999999999999999997654 589999985
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
..=..+-.| .....+....+.|||||.++
T Consensus 436 wMG~fLl~E----------~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 436 LLGSFADNE----------LSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCBTTBGGG----------CHHHHHHHHGGGEEEEEEEE
T ss_pred cCccccccc----------CCHHHHHHHHHhcCCCcEEc
Confidence 332222111 12256666779999999876
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-09 Score=93.22 Aligned_cols=81 Identities=16% Similarity=-0.011 Sum_probs=62.0
Q ss_pred CCC--CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-------C-CCCceEEEEcCCCCC-
Q 022698 114 STV--KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-------G-VQEYVTAREGDVRSL- 182 (293)
Q Consensus 114 ~~~--~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-------~-~~~~v~~~~~d~~~~- 182 (293)
.++ .+|||+|||+|..+..+++. +++|+++|+++.+.+.++++++.. + +..+++++++|..++
T Consensus 85 ~~g~~~~VLDl~~G~G~dal~lA~~------g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L 158 (258)
T 2oyr_A 85 KGDYLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL 158 (258)
T ss_dssp BTTBCCCEEETTCTTCHHHHHHHHH------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS
T ss_pred cCCCCCEEEEcCCcCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHH
Confidence 445 79999999999999999886 358999999998877666664322 2 325699999998763
Q ss_pred CCCCCcccEEEecchhhh
Q 022698 183 PFGDNYFDVVVSAAFFHT 200 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~ 200 (293)
+....+||+|+++|+|..
T Consensus 159 ~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 159 TDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp TTCSSCCSEEEECCCCCC
T ss_pred HhCcccCCEEEEcCCCCC
Confidence 321246999999999865
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.2e-09 Score=89.25 Aligned_cols=147 Identities=13% Similarity=0.096 Sum_probs=96.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhc---CC-----CcEEEEEeCCH---HHHH-----------HHHHHHHhc------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKT---GS-----LGRVVGLDCKK---RTTL-----------STLRTAKME------ 166 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~---~~-----~~~v~~vDis~---~~l~-----------~a~~~~~~~------ 166 (293)
+..+|||+|+|+|..++.+++...+. ++ ..+++++|..+ +.+. .++++.+..
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 45689999999999998887764110 11 25899999876 4444 455554431
Q ss_pred -------CCCCceEEEEcCCCC-CCC-CC---CcccEEEecchhh-hhccccCcchhhhHHHHHHHHHHHHHcccCCcEE
Q 022698 167 -------GVQEYVTAREGDVRS-LPF-GD---NYFDVVVSAAFFH-TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVG 233 (293)
Q Consensus 167 -------~~~~~v~~~~~d~~~-~~~-~~---~~fD~Iv~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 233 (293)
.-..+++++.+|+.+ ++. ++ .+||+|+..+.-- ..+ + .=...+++.+.++|+|||.|
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p-~---------lw~~~~l~~l~~~L~pGG~l 209 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNP-D---------MWTQNLFNAMARLARPGGTL 209 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCG-G---------GCCHHHHHHHHHHEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccCh-h---------hcCHHHHHHHHHHcCCCcEE
Confidence 111357889999876 332 12 2799999864211 011 0 00247899999999999998
Q ss_pred EEEcCCCchHHHHHHHHcCCcceEEeeeeccceecceeeeeecC
Q 022698 234 VVWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
+.+. ....+.+.|.++||...+ ..++..+..++.+.++
T Consensus 210 ~tys--aa~~vrr~L~~aGF~v~~----~~g~~~kr~m~~a~~~ 247 (257)
T 2qy6_A 210 ATFT--SAGFVRRGLQEAGFTMQK----RKGFGRKREMLCGVME 247 (257)
T ss_dssp EESC--CBHHHHHHHHHHTEEEEE----ECCSTTCCCEEEEEEC
T ss_pred EEEe--CCHHHHHHHHHCCCEEEe----CCCCCCCCceEEEEec
Confidence 8643 456789999999998443 3455555578887765
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.1e-09 Score=89.95 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=93.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc--C--CCCceEEEEcCCCCCC-CCCCc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--G--VQEYVTAREGDVRSLP-FGDNY 188 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--~--~~~~v~~~~~d~~~~~-~~~~~ 188 (293)
..+++||=||.|.|..+..+++..+ ..+++.+||++..++.+++.+... + -.+|++++..|....- ...++
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~----v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~ 157 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKN----VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQT 157 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTT----CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCC
T ss_pred CCCCeEEEECCCchHHHHHHHHcCC----cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhcccc
Confidence 3467999999999999998887644 359999999999999999986431 1 1368999999998753 34578
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE---cCCCchHHH---HHHHHcCCcceEEe
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW---DLLHVPEYV---RRLQELKMEDIRVS 259 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~---~~~~~~~~~---~~l~~~gf~~~~~~ 259 (293)
||+|+...+=. .. +....+ -.++++.+.+.|+|||+++.- .....+.+. +.+++. |..+...
T Consensus 158 yDvIi~D~~dp-~~--~~~~L~-----t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~-F~~v~~~ 225 (294)
T 3o4f_A 158 FDVIISDCTDP-IG--PGESLF-----TSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHY-FSDVGFY 225 (294)
T ss_dssp EEEEEESCCCC-CC--TTCCSS-----CCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHH-CSEEEEE
T ss_pred CCEEEEeCCCc-CC--Cchhhc-----CHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhh-CCceeee
Confidence 99999864311 11 111111 247899999999999999982 223344443 334444 7766654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.86 E-value=7.6e-09 Score=98.30 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=75.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcC---------CCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC-
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTG---------SLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~---------~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 185 (293)
+..|||+|||+|.+....+......+ ...+|+|+|.|+.+...+++... +++.++|+++.+|++++..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 45799999999999754433322111 13499999999988876665544 78888899999999987542
Q ss_pred ----CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 186 ----DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 186 ----~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
.+++|+|||-..=.....| -..+.+..+.+.|||||+++
T Consensus 489 ~~~~~ekVDIIVSElmGsfl~nE----------L~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFGDNE----------LSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTBGGG----------SHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEeccccccchh----------ccHHHHHHHHHhCCCCcEEE
Confidence 4689999985432221100 12345666678999999876
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.9e-08 Score=80.41 Aligned_cols=100 Identities=14% Similarity=0.011 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC--CCceEEEEcCCCCC----------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV--QEYVTAREGDVRSL---------- 182 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~--~~~v~~~~~d~~~~---------- 182 (293)
+..+|||+||| ..++.+++ .+ +.+|+.+|.+++..+.++++++..++ .++++++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~-~~----~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~ 102 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAE-LP----GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDA 102 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHT-ST----TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSST
T ss_pred CCCEEEEECch--HHHHHHHH-cC----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccch
Confidence 45799999984 56666654 32 36999999999999999999999997 77899999997542
Q ss_pred -----C--------C-CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 183 -----P--------F-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 183 -----~--------~-~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+ . ..++||+|+...... ...+..+.+.|+|||++++-+.
T Consensus 103 ~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-----------------~~~~~~~l~~l~~GG~Iv~DNv 155 (202)
T 3cvo_A 103 KWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR-----------------VGCALATAFSITRPVTLLFDDY 155 (202)
T ss_dssp TGGGTTHHHHGGGGCTTCCCCSEEEECSSSH-----------------HHHHHHHHHHCSSCEEEEETTG
T ss_pred hhhhHHHHhhhhhccccCCCCCEEEEeCCCc-----------------hhHHHHHHHhcCCCeEEEEeCC
Confidence 1 1 136899999875321 2445556689999999977543
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.77 E-value=7e-08 Score=90.64 Aligned_cols=151 Identities=18% Similarity=0.202 Sum_probs=99.2
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCC---------CcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGS---------LGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~---------~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
..+++.+++.+. ..++.+|+|.+||+|.+...+.+++.+... ...++|+|+++.+...|+-|+...+..
T Consensus 203 ~~Vv~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~- 280 (530)
T 3ufb_A 203 RPVVRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE- 280 (530)
T ss_dssp HHHHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-
T ss_pred HHHHHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-
Confidence 456666666665 356679999999999999988877654322 136999999999999999998887763
Q ss_pred ceEEEEcCCCCCCC----CCCcccEEEecchhhhhcccc----CcchhhhHHHHHHHHHHHHHccc-------CCcEEEE
Q 022698 171 YVTAREGDVRSLPF----GDNYFDVVVSAAFFHTVGKEY----GHRTVEAAAERMRVLGEMVRVLK-------PGGVGVV 235 (293)
Q Consensus 171 ~v~~~~~d~~~~~~----~~~~fD~Iv~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~Lk-------pgG~l~~ 235 (293)
...+..+|....+. ...+||+|++||||..-.... ........+....++..+.+.|| |||++.+
T Consensus 281 ~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~av 360 (530)
T 3ufb_A 281 YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAV 360 (530)
T ss_dssp CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEE
T ss_pred cccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEE
Confidence 34677788765442 235799999999995321100 00000111123457777777776 7999877
Q ss_pred EcC-----CC--chHHHHHHHHcC
Q 022698 236 WDL-----LH--VPEYVRRLQELK 252 (293)
Q Consensus 236 ~~~-----~~--~~~~~~~l~~~g 252 (293)
+-. .. ...+++.|.+.+
T Consensus 361 VlP~g~Lf~~~~~~~iRk~Lle~~ 384 (530)
T 3ufb_A 361 VVPNGTLFSDGISARIKEELLKNF 384 (530)
T ss_dssp EEEHHHHHCCTHHHHHHHHHHHHS
T ss_pred EecchhhhccchHHHHHHHHhhcC
Confidence 432 11 124666666653
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.75 E-value=9.5e-08 Score=82.28 Aligned_cols=127 Identities=14% Similarity=0.074 Sum_probs=93.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcC-CCcEEEEEeCCHH--------------------------HHHHHHHHHHhc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTG-SLGRVVGLDCKKR--------------------------TTLSTLRTAKME 166 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~-~~~~v~~vDis~~--------------------------~l~~a~~~~~~~ 166 (293)
..+++|||+|+..|..++.++..++..+ ++.+++++|..+. .++.+++|++..
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 3457999999999999999988776432 2468999996421 467789999999
Q ss_pred CCC-CceEEEEcCCCC-CC-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCch-
Q 022698 167 GVQ-EYVTAREGDVRS-LP-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP- 242 (293)
Q Consensus 167 ~~~-~~v~~~~~d~~~-~~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~- 242 (293)
++. ++++++.+|+.+ ++ .+.++||+|+...-.+ . .....++.+...|+|||++++-+....+
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y--~------------~~~~~Le~~~p~L~pGGiIv~DD~~~~~G 250 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY--E------------STWDTLTNLYPKVSVGGYVIVDDYMMCPP 250 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH--H------------HHHHHHHHHGGGEEEEEEEEESSCTTCHH
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc--c------------cHHHHHHHHHhhcCCCEEEEEcCCCCCHH
Confidence 884 789999999865 33 3356899999875321 1 3457889999999999999986654323
Q ss_pred ---HHHHHHHHcCCc
Q 022698 243 ---EYVRRLQELKME 254 (293)
Q Consensus 243 ---~~~~~l~~~gf~ 254 (293)
.+.+.+++.|..
T Consensus 251 ~~~Av~Ef~~~~~i~ 265 (282)
T 2wk1_A 251 CKDAVDEYRAKFDIA 265 (282)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCc
Confidence 355555666754
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=80.30 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=80.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
+.+..+|||+|||+|.++..++...+ ...+.++|++.++....... ...+ .++.....++....+..++||+|
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~----~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~dv~~l~~~~~DlV 144 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKE----VSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKTDIHRLEPVKCDTL 144 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTT----EEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSCCTTTSCCCCCSEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcC----CCcceeEEEeccCccccccc-CcCC--CCeEEEeccceehhcCCCCccEE
Confidence 56777999999999999987775533 24788899885421000000 0001 12444566554444557789999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC-cEEEEEcCCC--chHHHHHHHH--cCCcceEEeee
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG-GVGVVWDLLH--VPEYVRRLQE--LKMEDIRVSER 261 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~--~~~~~~~l~~--~gf~~~~~~~~ 261 (293)
+|+...+ . +....+ ......+++.+.++|+|| |.+++ ...+ .+++.+++.. .-|..+.+.+-
T Consensus 145 lsD~apn-s----G~~~~D-~~rs~~LL~~a~~~LkpG~G~FV~-KVf~pyg~~~~~l~~~lk~~F~~V~~~KP 211 (277)
T 3evf_A 145 LCDIGES-S----SSSVTE-GERTVRVLDTVEKWLACGVDNFCV-KVLAPYMPDVLEKLELLQRRFGGTVIRNP 211 (277)
T ss_dssp EECCCCC-C----SCHHHH-HHHHHHHHHHHHHHHTTCCSEEEE-EESCTTSHHHHHHHHHHHHHHCCEEECCT
T ss_pred EecCccC-c----CchHHH-HHHHHHHHHHHHHHhCCCCCeEEE-EecCCCCccHHHHHHHHHHhcCCEEEEeC
Confidence 9975443 1 111111 111223578888999999 99988 4444 6666555543 33666666543
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.4e-07 Score=79.41 Aligned_cols=120 Identities=15% Similarity=0.032 Sum_probs=78.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHh--------hh---cCCCcEEEEEeCCHHHHHHHHHHHHhcC-----------CCCceE
Q 022698 116 VKTALDIGCGRGILLNAVATQF--------KK---TGSLGRVVGLDCKKRTTLSTLRTAKMEG-----------VQEYVT 173 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~--------~~---~~~~~~v~~vDis~~~l~~a~~~~~~~~-----------~~~~v~ 173 (293)
..+|+|+|||+|..+..+.... .. ..+..+|...|+-.+.....-+.+.... ...+--
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 4689999999999999884432 11 1235799999988776655544443211 000111
Q ss_pred EEE---cCCCCCCCCCCcccEEEecchhhhhccccC-cc-------------------------hhhhHHHHHHHHHHHH
Q 022698 174 ARE---GDVRSLPFGDNYFDVVVSAAFFHTVGKEYG-HR-------------------------TVEAAAERMRVLGEMV 224 (293)
Q Consensus 174 ~~~---~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~-~~-------------------------~~~~~~~~~~~l~~~~ 224 (293)
|.. +..-.-.+++++||+|+|+..+||+...+. .. ......|...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 222222367899999999999999874331 11 0112347778999999
Q ss_pred HcccCCcEEEE
Q 022698 225 RVLKPGGVGVV 235 (293)
Q Consensus 225 ~~LkpgG~l~~ 235 (293)
+.|+|||++++
T Consensus 213 ~eL~pGG~mvl 223 (374)
T 3b5i_A 213 AEVKRGGAMFL 223 (374)
T ss_dssp HHEEEEEEEEE
T ss_pred HHhCCCCEEEE
Confidence 99999999987
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-06 Score=76.22 Aligned_cols=148 Identities=11% Similarity=-0.042 Sum_probs=86.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
+.++.++||+||++|.++..+++. +.+|+|+|+.+-. . .+.. .++|.+++.|......+.++||+|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r------g~~V~aVD~~~l~-~----~l~~---~~~V~~~~~d~~~~~~~~~~~D~v 274 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR------NMWVYSVDNGPMA-Q----SLMD---TGQVTWLREDGFKFRPTRSNISWM 274 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT------TCEEEEECSSCCC-H----HHHT---TTCEEEECSCTTTCCCCSSCEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC------CCEEEEEEhhhcC-h----hhcc---CCCeEEEeCccccccCCCCCcCEE
Confidence 467889999999999999988765 4699999987521 1 1122 245999999998876666789999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC----------chHHHHHHHHcCCcceEEeeee
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH----------VPEYVRRLQELKMEDIRVSERV 262 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~~~~l~~~gf~~~~~~~~~ 262 (293)
+|....+.. .....+..+...+..++.++...... ...+...+...||...-..+++
T Consensus 275 vsDm~~~p~-------------~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~~l~akhL 341 (375)
T 4auk_A 275 VCDMVEKPA-------------KVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQL 341 (375)
T ss_dssp EECCSSCHH-------------HHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEcCCCChH-------------HhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcchhheehhh
Confidence 997554322 22334444444444456555543322 1235566777888743223444
Q ss_pred ccceecceeeeeecCCCCCCCCCcee
Q 022698 263 TAFMVSSHIVSFRKPSQHYAGPGEVR 288 (293)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (293)
.+.--. --+.++|+.....+++..|
T Consensus 342 ~hdReE-iTV~~rk~~as~~~~Rde~ 366 (375)
T 4auk_A 342 YHDREE-VTVHVRRIWAAVGGRRDER 366 (375)
T ss_dssp TTCSSE-EEEEEEECCC---------
T ss_pred ccCCcE-EEEEEEechhcccccchhh
Confidence 432100 1356667766666665543
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=8.8e-07 Score=79.40 Aligned_cols=118 Identities=13% Similarity=-0.005 Sum_probs=77.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhh-------------cCCCcEEEEEeCC-----------HHHHHHHHHHHHhcCCCCc
Q 022698 116 VKTALDIGCGRGILLNAVATQFKK-------------TGSLGRVVGLDCK-----------KRTTLSTLRTAKMEGVQEY 171 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~-------------~~~~~~v~~vDis-----------~~~l~~a~~~~~~~~~~~~ 171 (293)
..+|+|+||++|..+..+...+-+ ..+..+|+..|+- +.+.+.+++ ..+...+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence 468999999999999988876211 1235789999987 333332211 1221111
Q ss_pred eEEEEcCCCC---CCCCCCcccEEEecchhhhhcccc-Ccch--------------------------hhhHHHHHHHHH
Q 022698 172 VTAREGDVRS---LPFGDNYFDVVVSAAFFHTVGKEY-GHRT--------------------------VEAAAERMRVLG 221 (293)
Q Consensus 172 v~~~~~d~~~---~~~~~~~fD~Iv~~~~~~~~~~~~-~~~~--------------------------~~~~~~~~~~l~ 221 (293)
.-|+.+.... -.++++++|+|+|+..+||+...+ .... .....|...+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455555443 236789999999999999987544 2110 112346677899
Q ss_pred HHHHcccCCcEEEEE
Q 022698 222 EMVRVLKPGGVGVVW 236 (293)
Q Consensus 222 ~~~~~LkpgG~l~~~ 236 (293)
..++.|+|||++++.
T Consensus 210 ~Ra~eL~pGG~mvl~ 224 (384)
T 2efj_A 210 IHSEELISRGRMLLT 224 (384)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHHhccCCeEEEE
Confidence 999999999999883
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.4e-07 Score=69.47 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCC-hHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRG-ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G-~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
+.+++.+.+.. .++.+|||+|||+| ..+..|++.. +.+|+++|+|+.+++ +++.|
T Consensus 23 e~LaeYI~~~~---~~~~rVlEVG~G~g~~vA~~La~~~-----g~~V~atDInp~Av~----------------~v~dD 78 (153)
T 2k4m_A 23 NDLAVYIIRCS---GPGTRVVEVGAGRFLYVSDYIRKHS-----KVDLVLTDIKPSHGG----------------IVRDD 78 (153)
T ss_dssp HHHHHHHHHHS---CSSSEEEEETCTTCCHHHHHHHHHS-----CCEEEEECSSCSSTT----------------EECCC
T ss_pred HHHHHHHHhcC---CCCCcEEEEccCCChHHHHHHHHhC-----CCeEEEEECCccccc----------------eEEcc
Confidence 34555555444 34579999999999 6888887632 578999999998554 78899
Q ss_pred CCCCCCCC-CcccEEEe-cchhhh
Q 022698 179 VRSLPFGD-NYFDVVVS-AAFFHT 200 (293)
Q Consensus 179 ~~~~~~~~-~~fD~Iv~-~~~~~~ 200 (293)
+.+..... ..||+|.+ +||...
T Consensus 79 iF~P~~~~Y~~~DLIYsirPP~El 102 (153)
T 2k4m_A 79 ITSPRMEIYRGAALIYSIRPPAEI 102 (153)
T ss_dssp SSSCCHHHHTTEEEEEEESCCTTT
T ss_pred CCCCcccccCCcCEEEEcCCCHHH
Confidence 98733211 47999955 555443
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=78.29 Aligned_cols=115 Identities=16% Similarity=0.054 Sum_probs=78.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-------CCCCceEEEEcCCCCCC---
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-------GVQEYVTAREGDVRSLP--- 183 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-------~~~~~v~~~~~d~~~~~--- 183 (293)
.++++||=||.|.|..+..+++. + ..+++.+||++..++.+++.+... .-.++++++..|....-
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~----~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~ 278 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-K----PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRY 278 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-C----CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-C----CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhh
Confidence 35679999999999999988865 2 258999999999999999875321 01245889999986531
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
-..++||+|+...+-......+ .+.....-..++++.+.+.|+|||+++.
T Consensus 279 ~~~~~~yDvIIvDl~D~~~s~~p--~g~a~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 279 AKEGREFDYVINDLTAVPISTSP--EEDSTWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp HHHTCCEEEEEEECCSSCCCCC------CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred hhccCceeEEEECCCCCcccCcc--cCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1246799999863311111000 0000111235789999999999999986
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.38 E-value=6.2e-07 Score=76.51 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+++.+. +.++..++|.+||.|..+..+++. +.+|+|+|.++.+++.+++ +.. +++.++++|+.+
T Consensus 10 Ll~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~------~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~ 77 (285)
T 1wg8_A 10 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER------GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRH 77 (285)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGG
T ss_pred HHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC------CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcch
Confidence 4455555554 467789999999999999999886 2599999999999999988 543 469999999987
Q ss_pred CC-----CCCCcccEEEecchh
Q 022698 182 LP-----FGDNYFDVVVSAAFF 198 (293)
Q Consensus 182 ~~-----~~~~~fD~Iv~~~~~ 198 (293)
++ ...+++|.|+++..+
T Consensus 78 l~~~L~~~g~~~vDgIL~DLGv 99 (285)
T 1wg8_A 78 LKRHLAALGVERVDGILADLGV 99 (285)
T ss_dssp HHHHHHHTTCSCEEEEEEECSC
T ss_pred HHHHHHHcCCCCcCEEEeCCcc
Confidence 64 122579999987554
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-06 Score=77.40 Aligned_cols=120 Identities=18% Similarity=0.124 Sum_probs=82.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHh--------hh----cCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC---
Q 022698 116 VKTALDIGCGRGILLNAVATQF--------KK----TGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR--- 180 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~--------~~----~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~--- 180 (293)
..+|+|+||++|..+..+.... .+ ..+..+|+..|...+....+-+.+.......+.-|..+...
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 4579999999998877654431 11 12357999999998888777766543110011234444333
Q ss_pred CCCCCCCcccEEEecchhhhhcccc-Ccc--------------------hhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEY-GHR--------------------TVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~-~~~--------------------~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.-.++++++|+|+|+..+||+...+ ... ......|...+|+..++.|+|||++++
T Consensus 132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl 207 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 3347789999999999999987544 111 112356888899999999999999987
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-06 Score=74.02 Aligned_cols=136 Identities=17% Similarity=0.096 Sum_probs=78.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
+.+..+|||+|||+|.++..++...+ ...+.|+|++..+...+... ...+ .++.....++....+..+++|+|
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~g----v~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~dv~~l~~~~~DvV 160 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKN----VKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTDVFNMEVIPGDTL 160 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTT----EEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCCGGGSCCCCCSEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC----CCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcchhhcCCCCcCEE
Confidence 56777999999999999987776543 35789999986532111100 0011 12333333322222446789999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC--cEEEEEcCC-CchHHHHHHHH--cCCcceEEeee
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG--GVGVVWDLL-HVPEYVRRLQE--LKMEDIRVSER 261 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~~-~~~~~~~~l~~--~gf~~~~~~~~ 261 (293)
+|....+ . |....+ ......++.-+.++|+|| |.|++=-+. ..+++.+++.. .-|..+.+.+-
T Consensus 161 LSDmApn-s----G~~~~D-~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V~~~KP 228 (282)
T 3gcz_A 161 LCDIGES-S----PSIAVE-EQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGLVRVP 228 (282)
T ss_dssp EECCCCC-C----SCHHHH-HHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCT
T ss_pred EecCccC-C----CChHHH-HHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCEEEEcC
Confidence 9975543 1 111111 112223577778999999 998883222 15665555533 33666666543
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.9e-06 Score=75.20 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+++.+. ..++..++|..+|.|..+..+++.+.. ..+|+|+|.++.+++.++ ++ ..+++.+++++..+
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~---~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGE---EGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCT---TCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHH
Confidence 4455666654 467889999999999999999887643 469999999999999884 33 13679999999887
Q ss_pred CC--CC----CCcccEEEecchh
Q 022698 182 LP--FG----DNYFDVVVSAAFF 198 (293)
Q Consensus 182 ~~--~~----~~~fD~Iv~~~~~ 198 (293)
+. +. .+++|.|+.+..+
T Consensus 116 l~~~L~~~g~~~~vDgILfDLGV 138 (347)
T 3tka_A 116 LGEYVAERDLIGKIDGILLDLGV 138 (347)
T ss_dssp HHHHHHHTTCTTCEEEEEEECSC
T ss_pred HHHHHHhcCCCCcccEEEECCcc
Confidence 53 11 1369999987555
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=4e-05 Score=63.23 Aligned_cols=139 Identities=21% Similarity=0.145 Sum_probs=84.1
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc-CCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-DVRSLP 183 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~~~ 183 (293)
++.+.. .+.++.+|+|+||++|.++..++.... ..+|+|+|+-..-.+. -...+..|+ +.+.|..+ |+..++
T Consensus 69 ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g----~~~V~avdvG~~ghe~-P~~~~s~gw-n~v~fk~gvDv~~~~ 141 (267)
T 3p8z_A 69 WFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKK----VTEVRGYTKGGPGHEE-PVPMSTYGW-NIVKLMSGKDVFYLP 141 (267)
T ss_dssp HHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTT----EEEEEEECCCSTTSCC-CCCCCCTTT-TSEEEECSCCGGGCC
T ss_pred HHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcC----CCEEEEEecCCCCccC-cchhhhcCc-CceEEEeccceeecC
Confidence 344443 356778999999999999987776543 3589999997652100 001122343 44899998 987654
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE-EcCCCchHHHHHHHHc--CCcceEEe
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVPEYVRRLQEL--KMEDIRVS 259 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~l~~~--gf~~~~~~ 259 (293)
..++|+|+|.-.-. ...+..+...-..+|+-+.+.|++ |-+++ +-....+++.+.+++. -|....++
T Consensus 142 --~~~~DtllcDIgeS------s~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~~fgg~lVR 211 (267)
T 3p8z_A 142 --PEKCDTLLCDIGES------SPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQRKHGGMLVR 211 (267)
T ss_dssp --CCCCSEEEECCCCC------CSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHHHHCCEEEC
T ss_pred --CccccEEEEecCCC------CCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHHHhCCEeEe
Confidence 36799999962211 111111122223467777789999 66666 5555666776666432 24444444
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.5e-05 Score=64.95 Aligned_cols=130 Identities=22% Similarity=0.222 Sum_probs=78.8
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc-CCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-DVRSLP 183 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~~~ 183 (293)
++.+. ..+.++.+|||+||++|.++..++.... ..+|+|+|+-..-.+. -...+..++ +-|.+... |+..++
T Consensus 85 ei~~~-~~l~~~~~VlDLGaapGGwsq~~~~~~g----v~~V~avdvG~~~he~-P~~~~ql~w-~lV~~~~~~Dv~~l~ 157 (321)
T 3lkz_A 85 WLVER-RFLEPVGKVIDLGCGRGGWCYYMATQKR----VQEVRGYTKGGPGHEE-PQLVQSYGW-NIVTMKSGVDVFYRP 157 (321)
T ss_dssp HHHHT-TSCCCCEEEEEETCTTCHHHHHHTTCTT----EEEEEEECCCSTTSCC-CCCCCBTTG-GGEEEECSCCTTSSC
T ss_pred HHHHh-cCCCCCCEEEEeCCCCCcHHHHHHhhcC----CCEEEEEEcCCCCccC-cchhhhcCC-cceEEEeccCHhhCC
Confidence 34444 2356777999999999999987665543 3589999997651100 000012222 23788877 887765
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC-cEEEE-EcCCCchHHHHHHH
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG-GVGVV-WDLLHVPEYVRRLQ 249 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~-~~~~~~~~~~~~l~ 249 (293)
. .++|+|+|.-. ...+ .+.++...-..+|+-+.+.|++| |-+++ +-....+++.+.+.
T Consensus 158 ~--~~~D~ivcDig-eSs~-----~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~ 217 (321)
T 3lkz_A 158 S--ECCDTLLCDIG-ESSS-----SAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKME 217 (321)
T ss_dssp C--CCCSEEEECCC-CCCS-----CHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHH
T ss_pred C--CCCCEEEEECc-cCCC-----ChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHH
Confidence 3 56999999743 2111 11221222234677777889998 87777 44444577766665
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.6e-05 Score=67.91 Aligned_cols=135 Identities=19% Similarity=0.176 Sum_probs=76.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
+.++.+|||+||++|.++..+++..+ ...|.|+|+...+...... ....+. +.+.+. .++....+..+++|+|
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~g----v~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~-~~~di~~l~~~~~DlV 151 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKE----VMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFK-DKSNVFTMPTEPSDTL 151 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTT----EEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEE-CSCCTTTSCCCCCSEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcC----CceeeeEEecccccccccc-ccccCC-ceEEee-cCceeeecCCCCcCEE
Confidence 45788999999999999998886543 3478899997542100000 000010 113332 2222222345789999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC-cEEEEEcCCC--chHHHHHHHH--cCCcceEEeee
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG-GVGVVWDLLH--VPEYVRRLQE--LKMEDIRVSER 261 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~--~~~~~~~l~~--~gf~~~~~~~~ 261 (293)
+|....+ . |.... +......++.-+.++|+|| |.|++= ..+ .+++.+++.. .-|..+.+.+-
T Consensus 152 lsD~APn-s----G~~~~-D~~rs~~LL~~A~~~LkpG~G~FV~K-vF~~yG~~~~~ll~~lk~~F~~V~~~KP 218 (300)
T 3eld_A 152 LCDIGES-S----SNPLV-ERDRTMKVLENFERWKHVNTENFCVK-VLAPYHPDVIEKLERLQLRFGGGIVRVP 218 (300)
T ss_dssp EECCCCC-C----SSHHH-HHHHHHHHHHHHHHHCCTTCCEEEEE-ESSTTSHHHHHHHHHHHHHHCCEEECCT
T ss_pred eecCcCC-C----CCHHH-HHHHHHHHHHHHHHHhcCCCCcEEEE-eccccCccHHHHHHHHHHhCCcEEEEeC
Confidence 9974433 1 22111 1112234577778999999 999883 333 5665555533 33666666543
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=8.6e-05 Score=62.15 Aligned_cols=131 Identities=19% Similarity=0.154 Sum_probs=72.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCC-CcEEEEEe--CCHHHHHHHHHHHHhcCCCCceEEEEc-CCCCCCCCCCc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGS-LGRVVGLD--CKKRTTLSTLRTAKMEGVQEYVTAREG-DVRSLPFGDNY 188 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~-~~~v~~vD--is~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~ 188 (293)
+.++.+|+|+||+.|.++..+++..+- +. ...++++| +.|-. ....|+ +-+.|.++ |+.+++ ..+
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~v-g~V~G~vig~D~~~~P~~-------~~~~Gv-~~i~~~~G~Df~~~~--~~~ 139 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNV-QEVRGYTKGGPGHEEPML-------MQSYGW-NIVTMKSGVDVFYKP--SEI 139 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTE-EEEEEECCCSTTSCCCCC-------CCSTTG-GGEEEECSCCGGGSC--CCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCC-CCceeEEEccccccCCCc-------ccCCCc-eEEEeeccCCccCCC--CCC
Confidence 578889999999999999888765211 10 12445555 21110 000111 11356557 988743 457
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCc-EEEE-EcCCCchHHHHHHHH--cCCcceEEee
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG-VGVV-WDLLHVPEYVRRLQE--LKMEDIRVSE 260 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~-~~~~~~~~~~~~l~~--~gf~~~~~~~ 260 (293)
+|+|+|...-. .+....+...... .+.-+.++|+||| .+++ +-....+++.+.++. .-|..+.+++
T Consensus 140 ~DvVLSDMAPn-----SG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~~vkvk~ 209 (269)
T 2px2_A 140 SDTLLCDIGES-----SPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGLVRV 209 (269)
T ss_dssp CSEEEECCCCC-----CSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEECC
T ss_pred CCEEEeCCCCC-----CCccHHHHHHHHH-HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHcCCEEEEC
Confidence 99999973322 1222222111222 5666678999999 7777 222223677664432 2366666543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.99 E-value=2.5e-05 Score=67.85 Aligned_cols=59 Identities=24% Similarity=0.202 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
.++.+.++.... .++..|||++||+|..+..++.. +.+++|+|+++.+++.|++++...
T Consensus 222 ~~l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~------g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 222 LELAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW------GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 467888887764 46789999999999999887764 469999999999999999998765
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.93 E-value=5.2e-06 Score=70.90 Aligned_cols=117 Identities=11% Similarity=0.075 Sum_probs=85.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C---CCCCcccE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P---FGDNYFDV 191 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~---~~~~~fD~ 191 (293)
+..+||+-+|||.+++.+++. +.+++.+|.++.+++..++|++. .++++++..|.... . .+..+||+
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~------~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdL 162 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS------QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGL 162 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT------TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred CCCceeEeCCcHHHHHHHcCC------CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence 456899999999999887763 35999999999999999998865 35699999997541 1 22357999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHH--cccCCcEEEEEcCC-Cc---hHHHHHHHHcCC
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVR--VLKPGGVGVVWDLL-HV---PEYVRRLQELKM 253 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~-~~---~~~~~~l~~~gf 253 (293)
|+..|||..-. +...+++.+.+ .+.|+|+++++-.. .. ..+.+.|++.|.
T Consensus 163 VfiDPPYe~k~------------~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~ 218 (283)
T 2oo3_A 163 IFIDPSYERKE------------EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS 218 (283)
T ss_dssp EEECCCCCSTT------------HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS
T ss_pred EEECCCCCCCc------------HHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC
Confidence 99999998543 55556655554 57799999885443 33 345555566666
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.93 E-value=3.9e-05 Score=68.03 Aligned_cols=91 Identities=9% Similarity=-0.072 Sum_probs=69.8
Q ss_pred HhhhcccccccCccchHHHHHHHHHhcCCCC-----CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHH
Q 022698 84 LFFAAGNFFYSAVPLHYDMAQRMVGSVNDWS-----TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLS 158 (293)
Q Consensus 84 ~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~-----~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~ 158 (293)
........++.++-..+.+.+.+++.+.-.. ++..|||||.|.|.+|..|+.... ..+|+++|+++..+..
T Consensus 22 ~~~~~kk~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~----~~~vvavE~D~~l~~~ 97 (353)
T 1i4w_A 22 DISKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC----PRQYSLLEKRSSLYKF 97 (353)
T ss_dssp TTCSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC----CSEEEEECCCHHHHHH
T ss_pred hccCCCCCCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC----CCEEEEEecCHHHHHH
Confidence 3334445677777788889999988875211 357899999999999999997642 2489999999999988
Q ss_pred HHHHHHhcCCCCceEEEEcCCCCC
Q 022698 159 TLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 159 a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
.++.. . .++++++.+|+.++
T Consensus 98 L~~~~-~---~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 98 LNAKF-E---GSPLQILKRDPYDW 117 (353)
T ss_dssp HHHHT-T---TSSCEEECSCTTCH
T ss_pred HHHhc-c---CCCEEEEECCccch
Confidence 88776 2 25699999999654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00021 Score=61.82 Aligned_cols=145 Identities=14% Similarity=0.062 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCc--EEEEEeCCH--------HHHH-HHHHHHHhc----CCCCceEEEEcCC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLG--RVVGLDCKK--------RTTL-STLRTAKME----GVQEYVTAREGDV 179 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~--~v~~vDis~--------~~l~-~a~~~~~~~----~~~~~v~~~~~d~ 179 (293)
+.-+|||+|-|+|...........+.++.. .++.+|..+ .... ..+...... +..-...+..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 345899999999998765554433323333 556666421 1111 122112111 1111246777887
Q ss_pred CC-CC-CCCCcccEEEecchhhhhccccCcchhhhHHHH----HHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCC
Q 022698 180 RS-LP-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER----MRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKM 253 (293)
Q Consensus 180 ~~-~~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf 253 (293)
.+ ++ +.+.+||+|+..+.- . ..+| .++++.++++++|||.+.- +...-.+++.|.++||
T Consensus 176 ~~~l~~l~~~~~Da~flDgFs-P------------~kNPeLWs~e~f~~l~~~~~pgg~laT--Ytaag~VRR~L~~aGF 240 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFS-P------------YKNPELWTLDFLSLIKERIDEKGYWVS--YSSSLSVRKSLLTLGF 240 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSC-T------------TTSGGGGSHHHHHHHHTTEEEEEEEEE--SCCCHHHHHHHHHTTC
T ss_pred HHHHhhhcccceeEEEeCCCC-c------------ccCcccCCHHHHHHHHHHhCCCcEEEE--EeCcHHHHHHHHHCCC
Confidence 65 22 334579999975421 1 1122 4799999999999999875 4446689999999999
Q ss_pred cceEEeeeeccceecceeeeeecCC
Q 022698 254 EDIRVSERVTAFMVSSHIVSFRKPS 278 (293)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (293)
++- ...|+..++.++.+.++.
T Consensus 241 ~V~----k~~G~g~KReml~A~~~~ 261 (308)
T 3vyw_A 241 KVG----SSREIGRKRKGTVASLKA 261 (308)
T ss_dssp EEE----EEECC---CEEEEEESSS
T ss_pred EEE----ecCCCCCCCceeEEecCC
Confidence 843 356777777899988753
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=4.2e-06 Score=91.20 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=58.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcC-CCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-CCCCCcccE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTG-SLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-PFGDNYFDV 191 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~-~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~ 191 (293)
.+..+|||||.|+|..+..+.+.+.... ...+++.+|+|+...+.+++.++... +.....|..+. ++..++||+
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC-----CCE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccCCCCceeE
Confidence 3567999999999998877777664211 02489999999988777776665432 33333344332 233567999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|++..++|..+ +....+++++++|||||.+++.+
T Consensus 1315 via~~vl~~t~------------~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1315 LVCNCALATLG------------DPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EEEECC--------------------------------CCEEEEEE
T ss_pred EEEcccccccc------------cHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999998776 77889999999999999988754
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00018 Score=61.15 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG 167 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~ 167 (293)
..+.+.++.... .++..|||..||+|..+.+..+. +.+++|+|+++.+++.++++++.++
T Consensus 199 ~~l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~------gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 199 RDLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL------GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 567777887764 56789999999999999887655 4699999999999999999988665
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00043 Score=58.99 Aligned_cols=125 Identities=14% Similarity=0.071 Sum_probs=72.9
Q ss_pred CCCCCeEEEEcC------CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCC
Q 022698 113 WSTVKTALDIGC------GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGD 186 (293)
Q Consensus 113 ~~~~~~vLDiG~------G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 186 (293)
.+.+.+|||+|+ ..|.. +++++... ++.++++|+.+-. ...+ .++++|..+.. ..
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~---VLr~~~p~--g~~VVavDL~~~~-----------sda~--~~IqGD~~~~~-~~ 167 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA---VLRQWLPT--GTLLVDSDLNDFV-----------SDAD--STLIGDCATVH-TA 167 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH---HHHHHSCT--TCEEEEEESSCCB-----------CSSS--EEEESCGGGEE-ES
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH---HHHHhCCC--CcEEEEeeCcccc-----------cCCC--eEEEccccccc-cC
Confidence 456789999997 55652 33443211 3599999998751 0111 45899976643 35
Q ss_pred CcccEEEecchhhhhc--cccCcchhhhHHHHHHHHHHHHHcccCCcEEEE-EcCCCchHHHHHHHHcCCcceEEee
Q 022698 187 NYFDVVVSAAFFHTVG--KEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
++||+|+|.-.-.... ........ .=.+.++.-+.+.|+|||.|++ +-.....+....+++ -|+.+++.+
T Consensus 168 ~k~DLVISDMAPNtTG~~D~d~~Rs~---~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~~lrk-~F~~VK~fK 240 (344)
T 3r24_A 168 NKWDLIISDMYDPRTKHVTKENDSKE---GFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMG-HFSWWTAFV 240 (344)
T ss_dssp SCEEEEEECCCCTTSCSSCSCCCCCC---THHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHT-TEEEEEEEE
T ss_pred CCCCEEEecCCCCcCCccccchhHHH---HHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHHHHHh-hCCeEEEEC
Confidence 7899999963321111 01000000 0123456667789999999988 322222344444544 788888775
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00041 Score=61.39 Aligned_cols=130 Identities=8% Similarity=0.069 Sum_probs=76.2
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC---CCCcccEEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF---GDNYFDVVV 193 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~Iv 193 (293)
.+|+|+.||.|.++..+.+.--. ...+.++|+++.+++..+.|... ..+..+|+.++.. +...+|+|+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~---~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~~~~~D~l~ 73 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIP---AQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCS---EEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCC---ceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcCcCCcCEEE
Confidence 47999999999999888765100 13799999999999998888642 3467888887541 112599999
Q ss_pred ecchhhhhccccCcchhhhHHHHH-HHHH---HHHHccc--CCcEEE--EEcCC---CchHHHHHHHHcCCcceEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERM-RVLG---EMVRVLK--PGGVGV--VWDLL---HVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~---~~~~~Lk--pgG~l~--~~~~~---~~~~~~~~l~~~gf~~~~~ 258 (293)
..+|......--...+.. |.. .++. ++.+.++ |.-+++ +.+.. ....+.+.|++.||.....
T Consensus 74 ~gpPCq~fS~ag~~~g~~---d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~ 146 (343)
T 1g55_A 74 MSPPCQPFTRIGRQGDMT---DSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEF 146 (343)
T ss_dssp ECCC---------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred EcCCCcchhhcCCcCCcc---CccchHHHHHHHHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHHCCCeeEEE
Confidence 999976554211111111 211 1233 3445566 764444 22211 1245777788899875443
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00014 Score=63.02 Aligned_cols=87 Identities=24% Similarity=0.305 Sum_probs=56.0
Q ss_pred ceEEEEcCCCCC-C-CCCCcccEEEecchhhhhcc---ccC-cchhh----hHHHHHHHHHHHHHcccCCcEEEEEcCC-
Q 022698 171 YVTAREGDVRSL-P-FGDNYFDVVVSAAFFHTVGK---EYG-HRTVE----AAAERMRVLGEMVRVLKPGGVGVVWDLL- 239 (293)
Q Consensus 171 ~v~~~~~d~~~~-~-~~~~~fD~Iv~~~~~~~~~~---~~~-~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~- 239 (293)
++.++++|..+. . +++++||+|+++|||..... ... ..... .......+++++.++|+|||.+++.-..
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 478999998762 2 45689999999999964321 000 00000 0112346788999999999998874221
Q ss_pred --------------CchHHHHHHHHcCCcceE
Q 022698 240 --------------HVPEYVRRLQELKMEDIR 257 (293)
Q Consensus 240 --------------~~~~~~~~l~~~gf~~~~ 257 (293)
...++...+++.||....
T Consensus 101 ~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~ 132 (297)
T 2zig_A 101 AVARRRFGRHLVFPLHADIQVRCRKLGFDNLN 132 (297)
T ss_dssp EEECC----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred ccccccCCcccccccHHHHHHHHHHcCCeeec
Confidence 013677788999997654
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.23 E-value=0.005 Score=54.00 Aligned_cols=130 Identities=15% Similarity=0.051 Sum_probs=80.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-CCCcccEEEe
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-GDNYFDVVVS 194 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Iv~ 194 (293)
..+++|+.||.|.++..+.+. | ...+.++|+++.+++..+.|.... . .+|+.++.. .-..+|+|+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a----G-~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D~l~~ 77 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC----G-AECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT----T-CEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCSEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHC----C-CeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCCEEEE
Confidence 468999999999999887654 2 246889999999999888886432 1 577776532 1235999999
Q ss_pred cchhhhhccccCcchhhhHH-HHHHHHHHHHHcccCCcEEEEEcC---CC------chHHHHHHHHcCCcceEEe
Q 022698 195 AAFFHTVGKEYGHRTVEAAA-ERMRVLGEMVRVLKPGGVGVVWDL---LH------VPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~---~~------~~~~~~~l~~~gf~~~~~~ 259 (293)
.+|+.....--...+..+.. .+-.-+-++.+.++|.-. ++=++ .. ...+.+.|++.||......
T Consensus 78 gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~~~-~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~v 151 (327)
T 2c7p_A 78 GFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVV-FMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKV 151 (327)
T ss_dssp ECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEE-EEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEE
T ss_pred CCCCCCcchhcccCCCcchhhHHHHHHHHHHHhccCcEE-EEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEE
Confidence 99987765322222222211 122223334455788633 33111 11 2357777889999754443
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0033 Score=56.27 Aligned_cols=126 Identities=12% Similarity=0.024 Sum_probs=78.0
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC--------CCCc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF--------GDNY 188 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~ 188 (293)
.+++|+.||.|.++..+.+.- ...+.++|+++.+++..+.|.. ...+++.|+.++.. ..+.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG-----~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~ 71 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG-----FDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMP 71 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT-----CEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCC
T ss_pred CeEEEEccCcCHHHHHHHHCC-----CcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCC
Confidence 479999999999998887651 2357799999999888887743 25678899887631 2357
Q ss_pred ccEEEecchhhhhccccCcchhhhHH-HHHHHHHHHHHcccCCcEEEE--EcCCC------chHHHHHHHHcCCcc
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAA-ERMRVLGEMVRVLKPGGVGVV--WDLLH------VPEYVRRLQELKMED 255 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~--~~~~~------~~~~~~~l~~~gf~~ 255 (293)
+|+|+..+|......- +.....+.. ....-+-++...++|.-.++= .+... ...+. .|.+.||..
T Consensus 72 ~D~i~ggpPCQ~fS~a-g~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v 145 (376)
T 3g7u_A 72 IDGIIGGPPCQGFSSI-GKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDI 145 (376)
T ss_dssp CCEEEECCCCCTTC--------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEE
T ss_pred eeEEEecCCCCCcccc-cCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCCcc
Confidence 9999999997655421 222222211 112223344456788544431 11111 13455 788999976
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.032 Score=48.91 Aligned_cols=108 Identities=12% Similarity=0.181 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--------------------CCCceEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--------------------VQEYVTA 174 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--------------------~~~~v~~ 174 (293)
+...|+.+|||.......+....+ +.+++-+|. |+.++.-++.+...+ ..++..+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~----~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFP----HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKL 171 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCT----TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEE
T ss_pred CCcEEEEeCCCCccHHHHhcCcCC----CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEE
Confidence 456899999999999877765432 467888887 777776666655531 1256899
Q ss_pred EEcCCCCCCC---------CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 175 REGDVRSLPF---------GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 175 ~~~d~~~~~~---------~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+.+|+.+... ......++++-.++.+++ .+....+++.+.+.+ |+|.+++.+.
T Consensus 172 v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~----------~~~~~~ll~~ia~~~-~~~~~v~~e~ 233 (334)
T 1rjd_A 172 AACDLNDITETTRLLDVCTKREIPTIVISECLLCYMH----------NNESQLLINTIMSKF-SHGLWISYDP 233 (334)
T ss_dssp EECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSC----------HHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred EecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCC----------HHHHHHHHHHHHhhC-CCcEEEEEec
Confidence 9999987321 224578888888888887 447778889888876 7887766554
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0043 Score=54.39 Aligned_cols=136 Identities=11% Similarity=0.056 Sum_probs=80.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCC-CcEE-EEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC---CCCccc
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGS-LGRV-VGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF---GDNYFD 190 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~-~~~v-~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD 190 (293)
..+++|+.||.|.+...+.+. |- ...+ .++|+++.+.+..+.|.... +...|+.++.. +...+|
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a----G~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~i~~~~~D 78 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS----SININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQIESLNCN 78 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS----SCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHHHHHTCCC
T ss_pred CCEEEEECCChhHHHHHHHHc----CCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHHhccCCCC
Confidence 458999999999999877654 11 1256 79999999988888885321 45788877642 223689
Q ss_pred EEEecchhhhh--ccccCcchhhhHHHHHHHHHHHHH----cc--cCCcEEEEEcCC------CchHHHHHHHHcCCcce
Q 022698 191 VVVSAAFFHTV--GKEYGHRTVEAAAERMRVLGEMVR----VL--KPGGVGVVWDLL------HVPEYVRRLQELKMEDI 256 (293)
Q Consensus 191 ~Iv~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~----~L--kpgG~l~~~~~~------~~~~~~~~l~~~gf~~~ 256 (293)
+++..+|.... ..--...+..+. ...++.++.+ .+ +|. .+++=+.. ....+.+.|++.||..-
T Consensus 79 il~ggpPCQ~fs~S~ag~~~~~~d~--r~~L~~~~~r~~i~~~~~~P~-~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~ 155 (327)
T 3qv2_A 79 TWFMSPPCQPYNNSIMSKHKDINDP--RAKSVLHLYRDILPYLINKPK-HIFIENVPLFKESLVFKEIYNILIKNQYYIK 155 (327)
T ss_dssp EEEECCCCTTCSHHHHTTTCTTTCG--GGHHHHHHHHTTGGGCSSCCS-EEEEEECGGGGGSHHHHHHHHHHHHTTCEEE
T ss_pred EEEecCCccCcccccCCCCCCCccc--cchhHHHHHHHHHHHhccCCC-EEEEEchhhhcChHHHHHHHHHHHhCCCEEE
Confidence 99999987665 311111111111 1133444444 45 564 33332221 13457778889999755
Q ss_pred EEeeeeccc
Q 022698 257 RVSERVTAF 265 (293)
Q Consensus 257 ~~~~~~~~~ 265 (293)
...-+-..|
T Consensus 156 ~~vl~a~~y 164 (327)
T 3qv2_A 156 DIICSPIDI 164 (327)
T ss_dssp EEEECGGGG
T ss_pred EEEEeHHHc
Confidence 443333333
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.011 Score=53.57 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=49.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHH-HHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh--cCCC-CceEEEEcCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVA-TQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM--EGVQ-EYVTAREGDV 179 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~-~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~--~~~~-~~v~~~~~d~ 179 (293)
+.++..++|+|++.|..+..++ +..+. ..+|+++|++|...+..++|.+. |+.. +++.++..-+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~---~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al 291 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGK---FERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA 291 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSC---CSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCC---CCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence 4677899999999999998877 33321 26999999999999999999987 4333 5677765444
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0034 Score=54.95 Aligned_cols=87 Identities=22% Similarity=0.160 Sum_probs=55.0
Q ss_pred ceEEEEcCCCC-CC-CCCCcccEEEecchhhhhcc-ccCc-chhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC------
Q 022698 171 YVTAREGDVRS-LP-FGDNYFDVVVSAAFFHTVGK-EYGH-RTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH------ 240 (293)
Q Consensus 171 ~v~~~~~d~~~-~~-~~~~~fD~Iv~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------ 240 (293)
+..++++|..+ +. +++++||+|+++|||..... .++. ............++++.++|+|||.+++.....
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~ 93 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVP 93 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEE
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCc
Confidence 46788899765 32 45788999999999965321 1111 011112245678889999999999998842221
Q ss_pred ------chHHHHHHHHcCCcceE
Q 022698 241 ------VPEYVRRLQELKMEDIR 257 (293)
Q Consensus 241 ------~~~~~~~l~~~gf~~~~ 257 (293)
...+.+.+++.||..+.
T Consensus 94 ~~~~~~~~~i~~~~~~~Gf~~~~ 116 (323)
T 1boo_A 94 ARSIYNFRVLIRMIDEVGFFLAE 116 (323)
T ss_dssp EECCHHHHHHHHHHHTTCCEEEE
T ss_pred ccccchHHHHHHHHHhCCCEEEE
Confidence 12344556788987553
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0063 Score=53.45 Aligned_cols=139 Identities=9% Similarity=-0.027 Sum_probs=81.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC---CCCcccEEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF---GDNYFDVVV 193 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~Iv 193 (293)
.+++|+.||.|.+...+.+.--. ...+.++|+++.+.+.-+.|... ..+...|+.++.. +...+|+++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~---~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~~~~~D~l~ 74 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLD---GEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIKKWNVDTIL 74 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCS---EEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHHHTTCCEEE
T ss_pred CEEEEECcCccHHHHHHHHcCCC---ceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhccCCCCEEE
Confidence 47999999999999877654110 13688999999988888777532 3466788887642 223699999
Q ss_pred ecchhhhhccccCcchhhhHH-HHHHHHHHHHHccc-CCcEEEEEcCC------CchHHHHHHHHcCCcceEEeeeeccc
Q 022698 194 SAAFFHTVGKEYGHRTVEAAA-ERMRVLGEMVRVLK-PGGVGVVWDLL------HVPEYVRRLQELKMEDIRVSERVTAF 265 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~Lk-pgG~l~~~~~~------~~~~~~~~l~~~gf~~~~~~~~~~~~ 265 (293)
..+|......--...+..+.. ..-.-+-++.+.++ |. .+++=+.. ....+.+.|++.||......-+-..|
T Consensus 75 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~-~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~ 153 (333)
T 4h0n_A 75 MSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVD-YILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTV 153 (333)
T ss_dssp ECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCC-EEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTT
T ss_pred ecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCC-EEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHc
Confidence 998876554211111111111 11111223344555 74 33332221 13467888889999765444333333
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.039 Score=47.48 Aligned_cols=107 Identities=12% Similarity=0.058 Sum_probs=67.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcE-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC---C-CCc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGR-VVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF---G-DNY 188 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~-v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~-~~~ 188 (293)
....+++|+.||.|.+...+.+. |.... +.++|+++.+.+..+.|.. ...+...|+.++.. + .+.
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a----G~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~~~~ 83 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL----GIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQEWGP 83 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT----TBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHHTCC
T ss_pred CCCCEEEEeCcCccHHHHHHHHC----CCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcccCC
Confidence 34568999999999999877654 21122 6999999998887776642 24577899887641 1 146
Q ss_pred ccEEEecchhhhhcccc-CcchhhhHH-HHHHHHHHHHHcccCC
Q 022698 189 FDVVVSAAFFHTVGKEY-GHRTVEAAA-ERMRVLGEMVRVLKPG 230 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~~~~~~Lkpg 230 (293)
+|+++..+|...+..-- ...+..+.. .+-.-+-++.+.++|.
T Consensus 84 ~Dll~ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~rii~~~~P~ 127 (295)
T 2qrv_A 84 FDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPK 127 (295)
T ss_dssp CSEEEECCCCGGGBTTCTTCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred cCEEEecCCCccccccCccccccccccchhHHHHHHHHHHhCcc
Confidence 99999999987665321 112222211 2222333445567886
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.031 Score=48.72 Aligned_cols=136 Identities=10% Similarity=0.092 Sum_probs=83.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC-CCcccEEEec
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG-DNYFDVVVSA 195 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Iv~~ 195 (293)
.+|+|+-||.|.+...+.+. | -..+.++|+++.+.+.-+.|.. -.++.+|+.++... -.++|+++..
T Consensus 1 mkvidLFsG~GG~~~G~~~a----G-~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~~~~~~D~l~gg 68 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA----G-FRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDEFPKCDGIIGG 68 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT----T-CEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGGGSCCCSEEECC
T ss_pred CeEEEeCcCccHHHHHHHHC----C-CEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHhhCCcccEEEec
Confidence 37999999999998776543 2 2467799999998887777742 25678999876421 2469999999
Q ss_pred chhhhhccccCcchhhhHH-HHHHHHHHHHHcccCCcEEEEEcC------CC---chHHHHHHHHcCCcceEEeeeeccc
Q 022698 196 AFFHTVGKEYGHRTVEAAA-ERMRVLGEMVRVLKPGGVGVVWDL------LH---VPEYVRRLQELKMEDIRVSERVTAF 265 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~------~~---~~~~~~~l~~~gf~~~~~~~~~~~~ 265 (293)
+|...+..--..++..+.. .+-.-+-++.+.++|.-. ++=++ .. ...+.+.|.+.||..-...-+-..|
T Consensus 69 pPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~-~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~y 147 (331)
T 3ubt_Y 69 PPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFF-LAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDY 147 (331)
T ss_dssp CCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSEE-EEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGT
T ss_pred CCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCeEE-EeeeecccccccccchhhhhhhhhccCCcEEEEEecccccC
Confidence 9987665321112222221 222233345566788633 33222 11 2356777888998754443333333
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.016 Score=50.50 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=48.6
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCH---HHHHHHHHHHHhcC
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKK---RTTLSTLRTAKMEG 167 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~---~~l~~a~~~~~~~~ 167 (293)
...++.+.++.... .++..|||.-||+|..+.+.... +.+.+|+|+++ ..++.+++++...+
T Consensus 227 kp~~l~~~~i~~~~--~~~~~vlDpF~GsGtt~~aa~~~------~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 227 KPAAVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQE------GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp CCHHHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHH------TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHhC--CCCCEEEecCCCCCHHHHHHHHc------CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 44678888887764 46789999999999999877765 46999999999 99999998876554
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.012 Score=51.44 Aligned_cols=60 Identities=7% Similarity=0.001 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG 167 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~ 167 (293)
.++.+.++.... .++..|||..||+|..+.+..+. +.+.+|+|+++.+.+.+++++...+
T Consensus 239 ~~l~~~~i~~~~--~~~~~VlDpF~GsGtt~~aa~~~------gr~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 239 AKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERE------SRKWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp THHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred HHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 467777887653 56789999999999998776654 4699999999999999998877654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.35 Score=42.99 Aligned_cols=122 Identities=13% Similarity=0.076 Sum_probs=81.5
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEEcCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE-YVTAREGDVRSLP 183 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~-~v~~~~~d~~~~~ 183 (293)
.+++.+.....+.+||.++.+.|..+..++.. .++.+.-|--+....+.|++.+++.+ .+.+... ..+.
T Consensus 28 ~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~--------~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~- 97 (375)
T 4dcm_A 28 YLLQQLDDTEIRGPVLILNDAFGALSCALAEH--------KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TADY- 97 (375)
T ss_dssp HHHHTTTTCCCCSCEEEECCSSSHHHHHTGGG--------CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSCC-
T ss_pred HHHHhhhhccCCCCEEEECCCCCHHHHhhccC--------CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-cccc-
Confidence 34555443334568999999999999877632 34555447777778889999998764 3665433 2222
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHc
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQEL 251 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~ 251 (293)
...+|+|+...|-. .......+..+...|+||+.+++.+.. ......+.|++.
T Consensus 98 --~~~~~~v~~~lpk~-------------~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~ 152 (375)
T 4dcm_A 98 --PQQPGVVLIKVPKT-------------LALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKV 152 (375)
T ss_dssp --CSSCSEEEEECCSC-------------HHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHHH
T ss_pred --ccCCCEEEEEcCCC-------------HHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHhh
Confidence 35699999764422 125667888999999999999875532 234566677665
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0029 Score=53.52 Aligned_cols=85 Identities=9% Similarity=0.061 Sum_probs=51.5
Q ss_pred EEEEcCCCCC--CCCCCcccEEEecchhhhhccccC-c-chhhhHHHHHHHHHHHHHcccCCcEEEEE-cCCCchHHHHH
Q 022698 173 TAREGDVRSL--PFGDNYFDVVVSAAFFHTVGKEYG-H-RTVEAAAERMRVLGEMVRVLKPGGVGVVW-DLLHVPEYVRR 247 (293)
Q Consensus 173 ~~~~~d~~~~--~~~~~~fD~Iv~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~ 247 (293)
.++++|..+. .+++++||+|++.|||........ . .......-....++++.++|+|||.+++. +......+...
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~~~~~~~~~ 85 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQY 85 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHH
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcHHHHHHHHH
Confidence 4667776442 134678999999999964311110 0 01111123456778889999999998885 32223345567
Q ss_pred HHHcCCcceE
Q 022698 248 LQELKMEDIR 257 (293)
Q Consensus 248 l~~~gf~~~~ 257 (293)
+.+.||....
T Consensus 86 ~~~~gf~~~~ 95 (260)
T 1g60_A 86 LVSKGMIFQN 95 (260)
T ss_dssp HHHTTCEEEE
T ss_pred HHhhccceeE
Confidence 7888986443
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.023 Score=54.86 Aligned_cols=133 Identities=18% Similarity=0.188 Sum_probs=81.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhh--------cCCCcEEEEEeCCH---HHHHHHHHH-----------HHhc-----C
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKK--------TGSLGRVVGLDCKK---RTTLSTLRT-----------AKME-----G 167 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~--------~~~~~~v~~vDis~---~~l~~a~~~-----------~~~~-----~ 167 (293)
+.-+|+|+|.|+|...+.+.+...+ .....+++.+|..| +.+..+... .... +
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 3458999999999999988776532 11125799999844 444332211 1111 1
Q ss_pred -----C---CCceEEEEcCCCCC-C-CC---CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 168 -----V---QEYVTAREGDVRSL-P-FG---DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 168 -----~---~~~v~~~~~d~~~~-~-~~---~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
+ .-.+.+..+|+.+. + +. .+++|.++..+.--...++. =..+++..+.++++|||.+.
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~---------w~~~~~~~l~~~~~~g~~~~ 208 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDM---------WNEQLFNAMARMTRPGGTFS 208 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTT---------CSHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhh---------hhHHHHHHHHHHhCCCCEEE
Confidence 0 01356777777542 2 11 46799999854211110000 01478899999999999876
Q ss_pred EEcCCCchHHHHHHHHcCCcceEE
Q 022698 235 VWDLLHVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 235 ~~~~~~~~~~~~~l~~~gf~~~~~ 258 (293)
... ....+.+.+.++||...+.
T Consensus 209 t~~--~~~~vr~~l~~aGf~~~~~ 230 (689)
T 3pvc_A 209 TFT--AAGFVRRGLQQAGFNVTKV 230 (689)
T ss_dssp ESC--CCHHHHHHHHHTTCEEEEE
T ss_pred ecc--CcHHHHHHHHhCCeEEEec
Confidence 543 4578999999999975543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.05 Score=48.20 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=61.7
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-----CC
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-----PF 184 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~ 184 (293)
...++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++. |.. .++..+-.++ ..
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~-----Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~~ 254 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVC-----GASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEI 254 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHH-----TCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEECCCHHHHHHHHHc----CCC---EEecCCccCHHHHHHHh
Confidence 466788999999865 55666666554 24 799999999988777543 332 2222211111 01
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
..+.+|+|+-...- ...++.+.+.|+++|+++++..
T Consensus 255 ~~gg~D~vid~~g~------------------~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 255 TDGGVNFALESTGS------------------PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp TTSCEEEEEECSCC------------------HHHHHHHHHTEEEEEEEEECCC
T ss_pred cCCCCcEEEECCCC------------------HHHHHHHHHHHhcCCEEEEeCC
Confidence 12369999865321 2356777889999999988654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.12 Score=49.76 Aligned_cols=132 Identities=13% Similarity=0.163 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhh--------cCCCcEEEEEeC---CHHHHHHHHHH-----------HHhcCC----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKK--------TGSLGRVVGLDC---KKRTTLSTLRT-----------AKMEGV---- 168 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~--------~~~~~~v~~vDi---s~~~l~~a~~~-----------~~~~~~---- 168 (293)
+.-+|+|+|-|+|...+...+...+ .....+++++|. +.+.+..+... ......
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 3458999999999999888776531 111247899998 77666533321 111110
Q ss_pred ---------CCceEEEEcCCCCC-C-CC---CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 169 ---------QEYVTAREGDVRSL-P-FG---DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 169 ---------~~~v~~~~~d~~~~-~-~~---~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
.-.+.+..+|+.+. + +. ..+||+|+....-....++. =-.++++.+.++++|||.+.
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~---------w~~~~~~~l~~~~~~g~~~~ 216 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDM---------WTQNLFNAMARLARPGGTLA 216 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGG---------SCHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhh---------hhHHHHHHHHHHhCCCCEEE
Confidence 01244556666542 1 11 36799999854221111000 01468899999999999976
Q ss_pred EEcCCCchHHHHHHHHcCCcceE
Q 022698 235 VWDLLHVPEYVRRLQELKMEDIR 257 (293)
Q Consensus 235 ~~~~~~~~~~~~~l~~~gf~~~~ 257 (293)
... ....+.+.+.++||...+
T Consensus 217 t~~--~~~~vr~~L~~aGf~v~~ 237 (676)
T 3ps9_A 217 TFT--SAGFVRRGLQDAGFTMQK 237 (676)
T ss_dssp ESC--CCHHHHHHHHHHTCEEEE
T ss_pred ecc--CcHHHHHHHHhCCeEEEe
Confidence 543 356899999999997543
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.16 Score=42.47 Aligned_cols=120 Identities=18% Similarity=0.080 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCCC-hHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----
Q 022698 115 TVKTALDIGCGRG-ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F---- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G-~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 184 (293)
.++++|=-|++++ .++..+++.+.+. +++|+.+|.++..++.+.+..+..+- .++.++++|+.+.. +
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~--Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQL--GAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQIG 81 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHHH
Confidence 3567888887543 5788888888776 47999999999888887777666542 35888999987632 0
Q ss_pred -CCCcccEEEecchhhhhccccCcchhhhHHHHH-----------HHHHHHHHcccCCcEEEEEc
Q 022698 185 -GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERM-----------RVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 -~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~LkpgG~l~~~~ 237 (293)
.-++.|+++.|..+....+..+.......++.. ...+.....++.+|.++.+.
T Consensus 82 ~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis 146 (256)
T 4fs3_A 82 KDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT 146 (256)
T ss_dssp HHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred HHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence 126799999886543322111111111111111 12344456778899888754
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.098 Score=43.97 Aligned_cols=109 Identities=20% Similarity=0.183 Sum_probs=71.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhh---cCCCcEEEEEe-----CCH----------------------HHHHHHH---HH
Q 022698 116 VKTALDIGCGRGILLNAVATQFKK---TGSLGRVVGLD-----CKK----------------------RTTLSTL---RT 162 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~---~~~~~~v~~vD-----is~----------------------~~l~~a~---~~ 162 (293)
++.|+|+|+-.|..+..++..... .+...+++++| ..+ +.++... ++
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 458999999999999887654221 12356999999 321 1122111 12
Q ss_pred HHhcCC-CCceEEEEcCCCCC-C-----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 163 AKMEGV-QEYVTAREGDVRSL-P-----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 163 ~~~~~~-~~~v~~~~~d~~~~-~-----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.+..+. .+++.++.+++.+. + .+..+||+|....-.+ . .....++.+...|+|||++++
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y--~------------~t~~~le~~~p~l~~GGvIv~ 215 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY--E------------PTKAVLEAIRPYLTKGSIVAF 215 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH--H------------HHHHHHHHHGGGEEEEEEEEE
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc--c------------hHHHHHHHHHHHhCCCcEEEE
Confidence 223343 37799999998652 2 2345799999865321 1 446778889999999999999
Q ss_pred EcC
Q 022698 236 WDL 238 (293)
Q Consensus 236 ~~~ 238 (293)
-+.
T Consensus 216 DD~ 218 (257)
T 3tos_A 216 DEL 218 (257)
T ss_dssp SST
T ss_pred cCC
Confidence 665
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.28 Score=36.75 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=72.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVV 192 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~I 192 (293)
.+|+=+|+ |.++..+++.+.+.| .+|+++|.+++.++.+++ .+ +.++.+|..+.. ..-..+|.|
T Consensus 8 ~~viIiG~--G~~G~~la~~L~~~g--~~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a~i~~ad~v 75 (140)
T 3fwz_A 8 NHALLVGY--GRVGSLLGEKLLASD--IPLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLAHLECAKWL 75 (140)
T ss_dssp SCEEEECC--SHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHTTGGGCSEE
T ss_pred CCEEEECc--CHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhcCcccCCEE
Confidence 46888887 678888888877653 599999999997766553 23 567888876532 112468998
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
++..+-. .....+-...+.+.|+..++.. ...++..+.|++.|-..+
T Consensus 76 i~~~~~~---------------~~n~~~~~~a~~~~~~~~iiar--~~~~~~~~~l~~~G~d~v 122 (140)
T 3fwz_A 76 ILTIPNG---------------YEAGEIVASARAKNPDIEIIAR--AHYDDEVAYITERGANQV 122 (140)
T ss_dssp EECCSCH---------------HHHHHHHHHHHHHCSSSEEEEE--ESSHHHHHHHHHTTCSEE
T ss_pred EEECCCh---------------HHHHHHHHHHHHHCCCCeEEEE--ECCHHHHHHHHHCCCCEE
Confidence 8753321 1112233345667788765542 245678888999997644
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.29 Score=42.35 Aligned_cols=104 Identities=12% Similarity=0.032 Sum_probs=75.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEEcCCCCCC---------CC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--VQEYVTAREGDVRSLP---------FG 185 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~---------~~ 185 (293)
..|+++|||-=.... +++. +.+.+++-+| .|..++..++.+...+ ..++..++.+|+.+ . +.
T Consensus 104 ~QvV~LGaGlDTra~----Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d 176 (310)
T 2uyo_A 104 RQFVILASGLDSRAY----RLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFD 176 (310)
T ss_dssp CEEEEETCTTCCHHH----HSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCC
T ss_pred CeEEEeCCCCCchhh----hccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCC
Confidence 469999999887643 3321 1146899999 5998988888887543 24568899999986 3 11
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
....-++++-.++++++ .++...+++.+...+.||+.+++-.
T Consensus 177 ~~~Pt~~i~Egvl~Yl~----------~~~~~~ll~~l~~~~~~gs~l~~d~ 218 (310)
T 2uyo_A 177 PSARTAWLAEGLLMYLP----------ATAQDGLFTEIGGLSAVGSRIAVET 218 (310)
T ss_dssp TTSCEEEEECSCGGGSC----------HHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred CCCCEEEEEechHhhCC----------HHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 23456777778888887 3477889999999889999888743
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.087 Score=47.64 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=52.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCC-CcEEEEEeCCHHHHHHHHHHHHhc--CCCCceEEEEcCCCCCCCCCCccc-E
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGS-LGRVVGLDCKKRTTLSTLRTAKME--GVQEYVTAREGDVRSLPFGDNYFD-V 191 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~-~~~v~~vDis~~~l~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD-~ 191 (293)
..+|+|+|+|+|.++..+++.+...++ ..+++.||+|+...+.-++++... ....++.+.. ++| + .+. +
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~v~W~~----~lP--~-~~~g~ 210 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAPGLAARVRWLD----ALP--E-RFEGV 210 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHSTTTGGGEEEES----SCC--S-CEEEE
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccccccCCCceecc----cCC--c-cCceE
Confidence 468999999999999999988765321 248999999999777666665532 1223466542 122 2 233 6
Q ss_pred EEecchhhhhc
Q 022698 192 VVSAAFFHTVG 202 (293)
Q Consensus 192 Iv~~~~~~~~~ 202 (293)
|++|.++..+|
T Consensus 211 iiANE~fDAlP 221 (432)
T 4f3n_A 211 VVGNEVLDAMP 221 (432)
T ss_dssp EEEESCGGGSC
T ss_pred EEeehhhccCc
Confidence 66666654444
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.012 Score=47.16 Aligned_cols=96 Identities=22% Similarity=0.151 Sum_probs=58.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--------
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-------- 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-------- 183 (293)
...++.+||..|++ |.++..+++.+... +++|+++|.+++.++.+++ .+.. . .. |..+..
T Consensus 35 ~~~~g~~vlV~Ga~-ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~--~-~~--d~~~~~~~~~~~~~ 102 (198)
T 1pqw_A 35 RLSPGERVLIHSAT-GGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVE--Y-VG--DSRSVDFADEILEL 102 (198)
T ss_dssp CCCTTCEEEETTTT-SHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCS--E-EE--ETTCSTHHHHHHHH
T ss_pred CCCCCCEEEEeeCC-ChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC--E-Ee--eCCcHHHHHHHHHH
Confidence 45678899999853 44455554444433 3699999999887665532 3431 1 11 322211
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
...+.+|+|+.+.. . ..++.+.+.|+|||+++.+..
T Consensus 103 ~~~~~~D~vi~~~g----~---------------~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 103 TDGYGVDVVLNSLA----G---------------EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp TTTCCEEEEEECCC----T---------------HHHHHHHHTEEEEEEEEECSC
T ss_pred hCCCCCeEEEECCc----h---------------HHHHHHHHHhccCCEEEEEcC
Confidence 11236999997632 1 245677889999999988654
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.15 Score=45.52 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=50.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhc---CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKT---GSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~---~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
+..|+|+|+|+|.++..+++.+... ....+++.||+|+...+.-++++... +++.+. .++.++| ++ .-+|
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~---~~v~W~-~~l~~lp--~~-~~~v 153 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHWH-DSFEDVP--EG-PAVI 153 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEEE-SSGGGSC--CS-SEEE
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC---CCeEEe-CChhhcC--CC-CeEE
Confidence 4579999999999999998765321 11358999999998666544444332 246554 3334443 22 4577
Q ss_pred Eecchhhhhc
Q 022698 193 VSAAFFHTVG 202 (293)
Q Consensus 193 v~~~~~~~~~ 202 (293)
++|.++..+|
T Consensus 154 iANE~fDAlP 163 (387)
T 1zkd_A 154 LANEYFDVLP 163 (387)
T ss_dssp EEESSGGGSC
T ss_pred EeccccccCc
Confidence 7776665544
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.03 Score=48.80 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=53.2
Q ss_pred ceEEE-EcCCCCC--CCCCCcccEEEecchhhhhccccC-cchhhhHHHHHHHHHHHHHcccCCcEEEEE-cCCCc----
Q 022698 171 YVTAR-EGDVRSL--PFGDNYFDVVVSAAFFHTVGKEYG-HRTVEAAAERMRVLGEMVRVLKPGGVGVVW-DLLHV---- 241 (293)
Q Consensus 171 ~v~~~-~~d~~~~--~~~~~~fD~Iv~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~---- 241 (293)
...++ ++|..+. .+++++||+|+..|||........ ...+ ..-....+.++.++|+|||.+++. +....
T Consensus 38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~--~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~ 115 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDY--IGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAG 115 (319)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSH--HHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTT
T ss_pred cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHH--HHHHHHHHHHHHHHcCCCeEEEEEcCcccccccc
Confidence 35677 8888652 145678999999999964311100 0111 123456788889999999998884 33222
Q ss_pred ----hHHHHHHHHcC-CcceE
Q 022698 242 ----PEYVRRLQELK-MEDIR 257 (293)
Q Consensus 242 ----~~~~~~l~~~g-f~~~~ 257 (293)
..+...+...| |..+.
T Consensus 116 ~~~l~~l~~~i~~~G~~~~~~ 136 (319)
T 1eg2_A 116 SGDLISIISHMRQNSKMLLAN 136 (319)
T ss_dssp BCCHHHHHHHHHHHCCCEEEE
T ss_pred cccHHHHHHHHhCcccceeEE
Confidence 45566666677 76543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.39 Score=39.99 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=72.6
Q ss_pred CCeEEEEcCCCC-hHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRG-ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G-~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|=.|++.| .++..+++.+.+.| .+|+.++.++...+.+.+.....+. .++.++.+|+.+.. +.
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEAG--ARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCC--CEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHH
Confidence 567888887632 47888888887764 6899999987666655555544432 25889999998743 00
Q ss_pred -CCcccEEEecchhhhhccccCcchhhhHHHH-----------HHHHHHHHHcccCCcEEEEEc
Q 022698 186 -DNYFDVVVSAAFFHTVGKEYGHRTVEAAAER-----------MRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-++.|+++.|..+...............++. ..+.+.+...++++|.++.+.
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 1468999988655331100000000111122 235566777888889888754
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.84 Score=33.49 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=66.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDV 191 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~ 191 (293)
+.+|+=+|+ |.++..+++.+.+.| .+|+++|.+++.++...+. .+ +.++.+|..+.. .....+|+
T Consensus 4 ~m~i~IiG~--G~iG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~~---~~----~~~~~~d~~~~~~l~~~~~~~~d~ 72 (140)
T 1lss_A 4 GMYIIIAGI--GRVGYTLAKSLSEKG--HDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDAGIEDADM 72 (140)
T ss_dssp -CEEEEECC--SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHTTTTTCSE
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHh---cC----cEEEEcCCCCHHHHHHcCcccCCE
Confidence 357887775 888888888877653 5899999998866544322 12 455667664321 11246899
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcc
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMED 255 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~ 255 (293)
|+...+-. .....+..+.+.+.++- +++. ...+...+.+++.|...
T Consensus 73 vi~~~~~~---------------~~~~~~~~~~~~~~~~~-ii~~--~~~~~~~~~l~~~g~~~ 118 (140)
T 1lss_A 73 YIAVTGKE---------------EVNLMSSLLAKSYGINK-TIAR--ISEIEYKDVFERLGVDV 118 (140)
T ss_dssp EEECCSCH---------------HHHHHHHHHHHHTTCCC-EEEE--CSSTTHHHHHHHTTCSE
T ss_pred EEEeeCCc---------------hHHHHHHHHHHHcCCCE-EEEE--ecCHhHHHHHHHcCCCE
Confidence 98874322 11233444555577754 4332 23445567788888653
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.36 Score=40.13 Aligned_cols=114 Identities=15% Similarity=0.056 Sum_probs=70.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC----------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF----------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| ++|+.+|.+++.++...+.. + .++.++.+|+.+... .
T Consensus 8 gk~~lVTGa-s~gIG~a~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (255)
T 4eso_A 8 GKKAIVIGG-THGMGLATVRRLVEGG--AEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQT 79 (255)
T ss_dssp TCEEEEETC-SSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHH
Confidence 567887774 5678889998887764 69999999998776655543 1 358899999976420 0
Q ss_pred CCcccEEEecchhhhhccccCcchhhhH-------HHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAA-------AERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-++.|+++.|.......+-......... ..+..+.+.+...++++|.++.+.
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 80 LGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp HSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 1478999988654322110000000000 011234566667777888887754
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.092 Score=46.37 Aligned_cols=98 Identities=15% Similarity=0.050 Sum_probs=59.1
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------C
Q 022698 111 NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------F 184 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------~ 184 (293)
....++.+||-+|+| .++...++..... +++|+++|.++..++.+++ .|.. .++..+-.++. .
T Consensus 185 ~~~~~g~~VlV~G~G--~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~~ 253 (363)
T 3uog_A 185 GHLRAGDRVVVQGTG--GVALFGLQIAKAT--GAEVIVTSSSREKLDRAFA----LGAD---HGINRLEEDWVERVYALT 253 (363)
T ss_dssp TCCCTTCEEEEESSB--HHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHH
T ss_pred cCCCCCCEEEEECCC--HHHHHHHHHHHHc--CCEEEEEecCchhHHHHHH----cCCC---EEEcCCcccHHHHHHHHh
Confidence 346778899999965 4444443333333 4699999999987777654 3432 22222211110 1
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
....+|+|+.+..- ..+..+.+.|+|+|+++++..
T Consensus 254 ~g~g~D~vid~~g~-------------------~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 254 GDRGADHILEIAGG-------------------AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp TTCCEEEEEEETTS-------------------SCHHHHHHHEEEEEEEEEECC
T ss_pred CCCCceEEEECCCh-------------------HHHHHHHHHhhcCCEEEEEec
Confidence 12369999975331 234556789999999988643
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.1 Score=46.72 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=63.3
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-----
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P----- 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~----- 183 (293)
...++.+||-+|+|. |..+..+++.. ++ +|+++|.|++.++.+++ .|. .++..+-.+. .
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~~~~ 248 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLL-----GAACVIVGDQNPERLKLLSD----AGF----ETIDLRNSAPLRDQIDQ 248 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHH-----TCSEEEEEESCHHHHHHHHT----TTC----EEEETTSSSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEEcCCHHHHHHHHH----cCC----cEEcCCCcchHHHHHHH
Confidence 456788999999865 66666666654 34 89999999987766543 342 2222211111 0
Q ss_pred C-CCCcccEEEecchhhhhc--cccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 184 F-GDNYFDVVVSAAFFHTVG--KEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 184 ~-~~~~fD~Iv~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
. ....+|+|+-.-.-.... .+..+ .++...+..+.+.|++||+++++...
T Consensus 249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~------~~~~~~~~~~~~~l~~gG~iv~~G~~ 301 (398)
T 2dph_A 249 ILGKPEVDCGVDAVGFEAHGLGDEANT------ETPNGALNSLFDVVRAGGAIGIPGIY 301 (398)
T ss_dssp HHSSSCEEEEEECSCTTCBCSGGGTTS------BCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred HhCCCCCCEEEECCCCccccccccccc------cccHHHHHHHHHHHhcCCEEEEeccc
Confidence 1 122699999653321100 00000 01123567788899999999876543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.13 Score=44.95 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=59.4
Q ss_pred CCCCCCCeEEEEcCCC--ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----
Q 022698 111 NDWSTVKTALDIGCGR--GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----- 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~--G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----- 183 (293)
....++.+||-+|+|+ |..+..+++.. +++|+++|.+++.++.+++. +.. ..+..+-.+..
T Consensus 140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~l----ga~---~~~~~~~~~~~~~~~~ 207 (340)
T 3gms_A 140 LNLQRNDVLLVNACGSAIGHLFAQLSQIL-----NFRLIAVTRNNKHTEELLRL----GAA---YVIDTSTAPLYETVME 207 (340)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHH-----TCEEEEEESSSTTHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred cccCCCCEEEEeCCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHhC----CCc---EEEeCCcccHHHHHHH
Confidence 3467788999999874 55555555543 46999999999877777653 332 22221111110
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.....+|+|+.+..-. ......+.|+++|+++++..
T Consensus 208 ~~~~~g~Dvvid~~g~~-------------------~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 208 LTNGIGADAAIDSIGGP-------------------DGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp HTTTSCEEEEEESSCHH-------------------HHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCCcEEEECCCCh-------------------hHHHHHHHhcCCCEEEEEee
Confidence 1124699999753311 11233479999999998653
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.61 Score=39.69 Aligned_cols=118 Identities=16% Similarity=0.110 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCCC-hHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----
Q 022698 115 TVKTALDIGCGRG-ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F---- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G-~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 184 (293)
.++++|=.|+++| .++..+++.+.+.| ++|+.++.++...+.+.+.....+ ++.++.+|+.+.. +
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~ 104 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAG--AELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLE 104 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTT--CEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHH
Confidence 3568888887654 57888888887664 689999999765555555444433 3788999997632 0
Q ss_pred -CCCcccEEEecchhhhh----ccccCcchhhhH-------HHHHHHHHHHHHcccCCcEEEEEc
Q 022698 185 -GDNYFDVVVSAAFFHTV----GKEYGHRTVEAA-------AERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 -~~~~fD~Iv~~~~~~~~----~~~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.-++.|++|.|..+... ............ .....+.+.+.+.++.+|.++.+.
T Consensus 105 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 105 KKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp HHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred HhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 12579999998654321 000000000000 011235566667788889888754
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.13 Score=44.98 Aligned_cols=95 Identities=17% Similarity=0.127 Sum_probs=59.9
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCccc
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFD 190 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 190 (293)
...++.+||-+|+|. |..+..+++.. +++|+++|.+++.++.+++ .|.. .++ .+...+ . ..+|
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~-----Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~-~~~~~~--~-~~~D 236 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAM-----GAEVSVFARNEHKKQDALS----MGVK---HFY-TDPKQC--K-EELD 236 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHT-----TCEEEEECSSSTTHHHHHH----TTCS---EEE-SSGGGC--C-SCEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC-----CCeEEEEeCCHHHHHHHHh----cCCC---eec-CCHHHH--h-cCCC
Confidence 467788999998754 44444444433 3699999999987776654 4432 222 333222 2 2799
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
+|+-...-. ..+..+.+.|+|+|+++++....
T Consensus 237 ~vid~~g~~------------------~~~~~~~~~l~~~G~iv~~G~~~ 268 (348)
T 3two_A 237 FIISTIPTH------------------YDLKDYLKLLTYNGDLALVGLPP 268 (348)
T ss_dssp EEEECCCSC------------------CCHHHHHTTEEEEEEEEECCCCC
T ss_pred EEEECCCcH------------------HHHHHHHHHHhcCCEEEEECCCC
Confidence 999643211 13456778999999999865433
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.31 Score=40.49 Aligned_cols=116 Identities=20% Similarity=0.121 Sum_probs=71.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhh-cCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKK-TGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~-~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
+++||=.| |+|.++..+++.+.+ .| .+|++++.++...+...+.+...+ .++.++.+|+.+.. +.
T Consensus 4 ~k~vlITG-asggIG~~~a~~L~~~~g--~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 78 (276)
T 1wma_A 4 IHVALVTG-GNKGIGLAIVRDLCRLFS--GDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRK 78 (276)
T ss_dssp CCEEEESS-CSSHHHHHHHHHHHHHSS--SEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHhcC--CeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHH
Confidence 45677555 678899999998876 54 699999999887776666655443 34788999987632 00
Q ss_pred -CCcccEEEecchhhhhccccCcchhhhH--------HHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 -DNYFDVVVSAAFFHTVGKEYGHRTVEAA--------AERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-+++|+||.+......... ........ .....+++.+.+.++++|.++++.
T Consensus 79 ~~g~id~li~~Ag~~~~~~~-~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 79 EYGGLDVLVNNAGIAFKVAD-PTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp HHSSEEEEEECCCCCCCTTC-CSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hcCCCCEEEECCcccccCCC-ccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 1368999988654321110 00000000 011235566667777778887754
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.12 Score=44.89 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=60.3
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-CC------
Q 022698 111 NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-LP------ 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~------ 183 (293)
....++.+||-.|++ |.++..+++.+... +++|+++|.+++.++.+++ .+.. . . .|..+ ..
T Consensus 141 ~~~~~g~~vlV~Ga~-ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~--~-~--~d~~~~~~~~~~~~ 208 (333)
T 1v3u_A 141 CGVKGGETVLVSAAA-GAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFD--A-A--FNYKTVNSLEEALK 208 (333)
T ss_dssp SCCCSSCEEEEESTT-BHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS--E-E--EETTSCSCHHHHHH
T ss_pred hCCCCCCEEEEecCC-CcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCc--E-E--EecCCHHHHHHHHH
Confidence 345678899999973 34555555544443 4699999999987766632 2321 1 1 13222 11
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
...+.+|+++.+.. . ..+..+.+.|++||+++++..
T Consensus 209 ~~~~~~~d~vi~~~g-----------------~--~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 209 KASPDGYDCYFDNVG-----------------G--EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp HHCTTCEEEEEESSC-----------------H--HHHHHHHTTEEEEEEEEECCC
T ss_pred HHhCCCCeEEEECCC-----------------h--HHHHHHHHHHhcCCEEEEEec
Confidence 11246999997643 1 235677889999999988654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.11 Score=45.30 Aligned_cols=97 Identities=16% Similarity=0.101 Sum_probs=60.9
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--C--CC
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--F--GD 186 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~--~~ 186 (293)
...++.+||-.|+|. |..+..+++.. +++|+++|.+++.++.+++ .|.. .++..+-.+.. . ..
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~-----Ga~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~~~ 230 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAM-----GLRVAAVDIDDAKLNLARR----LGAE---VAVNARDTDPAAWLQKEI 230 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-----CCeEEEEeCCHHHHHHHHH----cCCC---EEEeCCCcCHHHHHHHhC
Confidence 456788999999865 66666565543 3699999999997776654 3432 22222111110 0 12
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+.+|+|+.+..- ...++.+.+.|+++|+++++..
T Consensus 231 g~~d~vid~~g~------------------~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 231 GGAHGVLVTAVS------------------PKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp SSEEEEEESSCC------------------HHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCEEEEeCCC------------------HHHHHHHHHHhccCCEEEEeCC
Confidence 368888864221 2456777889999999988643
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.33 Score=40.48 Aligned_cols=118 Identities=14% Similarity=-0.041 Sum_probs=73.0
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C---
Q 022698 114 STVKTALDIGCG-RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F--- 184 (293)
Q Consensus 114 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~--- 184 (293)
..+++||=.|++ +|.++..+++.+.+.| .+|+.++.++...+.+++.....+ ++.++.+|+.+.. +
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~ 86 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREG--AELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASL 86 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcC--CCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHH
Confidence 356789988874 4788999999888764 699999998765555555444433 3778899987632 0
Q ss_pred --CCCcccEEEecchhhhhcc--ccCcchhhhHHHH-----------HHHHHHHHHcccCCcEEEEEc
Q 022698 185 --GDNYFDVVVSAAFFHTVGK--EYGHRTVEAAAER-----------MRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 --~~~~fD~Iv~~~~~~~~~~--~~~~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.-++.|++|.|..+..... ....+. ...++. ..+.+.+...++++|.++++.
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 87 KTHWDSLDGLVHSIGFAPREAIAGDFLDG-LTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp HHHCSCEEEEEECCCCCCGGGGSSCTTTT-CCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHcCCCCEEEECCccCccccccCccccc-cCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 1247899999866543210 000000 011122 235566667777788877744
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.85 E-value=1.3 Score=32.71 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=68.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDV 191 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~ 191 (293)
..+|+=+|+ |.++..+++.+.+.| .+|+++|.+++.++.+++ .+ +.++.+|..+.. ..-..+|.
T Consensus 6 ~~~v~I~G~--G~iG~~la~~L~~~g--~~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~~l~~~~~~~~d~ 73 (141)
T 3llv_A 6 RYEYIVIGS--EAAGVGLVRELTAAG--KKVLAVDKSKEKIELLED----EG----FDAVIADPTDESFYRSLDLEGVSA 73 (141)
T ss_dssp CCSEEEECC--SHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHH----TT----CEEEECCTTCHHHHHHSCCTTCSE
T ss_pred CCEEEEECC--CHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHH----CC----CcEEECCCCCHHHHHhCCcccCCE
Confidence 347888887 668888988887654 599999999987665543 22 567788876532 11246899
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
|+...+-. ..........+.+. ...++... ..++..+.+++.|...+
T Consensus 74 vi~~~~~~---------------~~n~~~~~~a~~~~-~~~iia~~--~~~~~~~~l~~~G~~~v 120 (141)
T 3llv_A 74 VLITGSDD---------------EFNLKILKALRSVS-DVYAIVRV--SSPKKKEEFEEAGANLV 120 (141)
T ss_dssp EEECCSCH---------------HHHHHHHHHHHHHC-CCCEEEEE--SCGGGHHHHHHTTCSEE
T ss_pred EEEecCCH---------------HHHHHHHHHHHHhC-CceEEEEE--cChhHHHHHHHcCCCEE
Confidence 88764411 11222333334444 44444422 34566677888886533
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.11 Score=45.26 Aligned_cols=101 Identities=15% Similarity=0.047 Sum_probs=59.4
Q ss_pred cCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C
Q 022698 110 VNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F 184 (293)
Q Consensus 110 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~ 184 (293)
.....++.+||-.|++ |.++..+++..... +++|+++|.+++.++.+.+ ..+.. ..+..+-.+.. .
T Consensus 144 ~~~~~~g~~vlI~Ga~-g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~---~~~~~~~~~~~~~~~~~ 214 (336)
T 4b7c_A 144 VGQPKNGETVVISGAA-GAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVE---ELGFD---GAIDYKNEDLAAGLKRE 214 (336)
T ss_dssp TTCCCTTCEEEESSTT-SHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TTCCS---EEEETTTSCHHHHHHHH
T ss_pred hcCCCCCCEEEEECCC-CHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCC---EEEECCCHHHHHHHHHh
Confidence 3456788899999873 23333333333333 4699999999987666522 23432 12211111110 1
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
..+.+|+|+.+.. . ..+..+.+.|+++|+++++..
T Consensus 215 ~~~~~d~vi~~~g-----------------~--~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 215 CPKGIDVFFDNVG-----------------G--EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp CTTCEEEEEESSC-----------------H--HHHHHHHTTEEEEEEEEECCC
T ss_pred cCCCceEEEECCC-----------------c--chHHHHHHHHhhCCEEEEEee
Confidence 1346999987532 1 356777889999999988643
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.11 Score=45.63 Aligned_cols=97 Identities=15% Similarity=0.080 Sum_probs=59.3
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC---CCCCC---
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD---VRSLP--- 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d---~~~~~--- 183 (293)
...++.+||-+|+|. |..+..+++.. ++ +|+++|.++..++.+++ .|.. .++..+ ..+..
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i 235 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAM-----GAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKV 235 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHH
Confidence 356788999999754 55555555443 35 89999999987776653 3432 222221 00100
Q ss_pred --CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 --FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 --~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
...+.+|+|+-.... ...+....+.|+|||+++.+..
T Consensus 236 ~~~~~~g~D~vid~~g~------------------~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 236 EGQLGCKPEVTIECTGA------------------EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp HHHHTSCCSEEEECSCC------------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred HHHhCCCCCEEEECCCC------------------hHHHHHHHHHhcCCCEEEEEec
Confidence 011469999865321 1345667789999999988653
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.52 Score=40.16 Aligned_cols=117 Identities=17% Similarity=0.091 Sum_probs=71.8
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|=.|+++ ..++..+++.+.+.| ++|+.+|.++...+.+.+.....+ ++.++.+|+.+.. +.
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQG--AEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAE 104 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHH
Confidence 56788888764 578888888887764 699999999876555555544443 2678899987632 10
Q ss_pred -CCcccEEEecchhhhhccccCcchhhhHHHH-----------HHHHHHHHHcccCCcEEEEEc
Q 022698 186 -DNYFDVVVSAAFFHTVGKEYGHRTVEAAAER-----------MRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-++.|++|.|..+.........-.....++. ..+.+.+...++.+|.++.+.
T Consensus 105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 1578999998655321000000000001121 235566667778889888754
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.14 Score=44.39 Aligned_cols=97 Identities=12% Similarity=0.044 Sum_probs=58.8
Q ss_pred CCCCCCCeEEEEcC-C-CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----
Q 022698 111 NDWSTVKTALDIGC-G-RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----- 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----- 183 (293)
....++.+||-.|+ | .|..+..+++.. +++|+++|.+++.++.+++. |.. ..+..+-.+..
T Consensus 136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~~~~ 203 (325)
T 3jyn_A 136 YQVKPGEIILFHAAAGGVGSLACQWAKAL-----GAKLIGTVSSPEKAAHAKAL----GAW---ETIDYSHEDVAKRVLE 203 (325)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHc----CCC---EEEeCCCccHHHHHHH
Confidence 34667889998883 2 244444444433 46999999999987776643 321 22222111110
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.....+|+|+.+..- ..+..+.+.|+++|+++++..
T Consensus 204 ~~~~~g~Dvvid~~g~-------------------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 204 LTDGKKCPVVYDGVGQ-------------------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp HTTTCCEEEEEESSCG-------------------GGHHHHHTTEEEEEEEEECCC
T ss_pred HhCCCCceEEEECCCh-------------------HHHHHHHHHhcCCCEEEEEec
Confidence 122469999975331 234566789999999998654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=1.1 Score=37.90 Aligned_cols=117 Identities=18% Similarity=0.097 Sum_probs=69.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHH-HHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRT-TLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~-l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.|+ +|.++..+++.+.+.| ++|+.++.++.. .+...+..+..+ .++.++.+|+.+.. +
T Consensus 47 gk~vlVTGa-s~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 47 GKNVLITGG-DSGIGRAVSIAFAKEG--ANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVR 121 (291)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 467887775 5678888988887764 699999988653 333444444433 45889999998632 1
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhH--------HHHHHHHHHHHHcccCCcEEEEEc
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAA--------AERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.-++.|++|.|............-..... .....+.+.+.+.++.+|.++.+.
T Consensus 122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 01468999988543221100000000000 012235666777788889887754
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.50 E-value=1.6 Score=35.62 Aligned_cols=79 Identities=20% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++.++..++...+.....+ .++.++.+|+.+.. + .
T Consensus 5 ~k~vlITG-as~gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (247)
T 3lyl_A 5 EKVALVTG-ASRGIGFEVAHALASKG--ATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAE 79 (247)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence 45677666 56788889998888764 699999999988887777666654 34889999997632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
.++.|++|.|..+.
T Consensus 80 ~~~id~li~~Ag~~ 93 (247)
T 3lyl_A 80 NLAIDILVNNAGIT 93 (247)
T ss_dssp TCCCSEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 24689999886543
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.19 Score=43.90 Aligned_cols=97 Identities=16% Similarity=0.020 Sum_probs=59.0
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC---CC----
Q 022698 111 NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS---LP---- 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~---~~---- 183 (293)
....++.+||-.|+ +|.++..+++..... +++|+++|.+++.++.+++. .|.. ..+ |..+ +.
T Consensus 151 ~~~~~g~~vlI~Ga-~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~~---~g~~---~~~--d~~~~~~~~~~~~ 219 (345)
T 2j3h_A 151 CSPKEGETVYVSAA-SGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKTK---FGFD---DAF--NYKEESDLTAALK 219 (345)
T ss_dssp SCCCTTCEEEESST-TSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT---SCCS---EEE--ETTSCSCSHHHHH
T ss_pred hCCCCCCEEEEECC-CcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHH---cCCc---eEE--ecCCHHHHHHHHH
Confidence 34667889999996 234444444443333 36999999999877665422 2321 122 2221 10
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
...+.+|+|+.+.. . ..++...+.|++||+++++.
T Consensus 220 ~~~~~~~d~vi~~~g-----------------~--~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 220 RCFPNGIDIYFENVG-----------------G--KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp HHCTTCEEEEEESSC-----------------H--HHHHHHHTTEEEEEEEEECC
T ss_pred HHhCCCCcEEEECCC-----------------H--HHHHHHHHHHhcCCEEEEEc
Confidence 11246999997632 1 25677788999999998854
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=93.45 E-value=1 Score=38.74 Aligned_cols=81 Identities=20% Similarity=0.101 Sum_probs=59.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
+++||=.|++ |.++..+++.+.+.| .+|++++.++..++.+.+.....+...++.++.+|+.+.. + .
T Consensus 8 ~k~vlVTGas-~gIG~~la~~l~~~G--~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 8 GRTAFVTGGA-NGVGIGLVRQLLNQG--CKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp TCEEEEETTT-STHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCc-hHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 4578877754 668888888887764 6999999999988877776665554346899999997632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|..+.
T Consensus 85 ~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 85 FGPVSILCNNAGVN 98 (319)
T ss_dssp TCCEEEEEECCCCC
T ss_pred CCCCCEEEECCCcC
Confidence 15689999986643
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.96 Score=38.57 Aligned_cols=80 Identities=25% Similarity=0.167 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
.++++|=.|++ |.++..+++.+.+.| .+|+.++.++..++.+.+.+...+ .++.++.+|+.+.. ..
T Consensus 30 ~gk~vlVTGas-~gIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (301)
T 3tjr_A 30 DGRAAVVTGGA-SGIGLATATEFARRG--ARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFR 104 (301)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 35678877754 678888988887764 699999999998887777766654 34889999998742 00
Q ss_pred -CCcccEEEecchhh
Q 022698 186 -DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~ 199 (293)
.++.|++|.|..+.
T Consensus 105 ~~g~id~lvnnAg~~ 119 (301)
T 3tjr_A 105 LLGGVDVVFSNAGIV 119 (301)
T ss_dssp HHSSCSEEEECCCCC
T ss_pred hCCCCCEEEECCCcC
Confidence 14789999986654
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=93.35 E-value=0.08 Score=48.76 Aligned_cols=79 Identities=13% Similarity=0.078 Sum_probs=54.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-----------
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF----------- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 184 (293)
..+++|+.||.|.+...+.+. | ...+.++|+++.+.+.-+.|.... +...++..|+.++..
T Consensus 88 ~~~viDLFaG~GGlslG~~~a----G-~~~v~avE~d~~A~~ty~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~ 159 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI----G-GQCVFTSEWNKHAVRTYKANHYCD---PATHHFNEDIRDITLSHQEGVSDEAA 159 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT----T-EEEEEEECCCHHHHHHHHHHSCCC---TTTCEEESCTHHHHCTTCTTSCHHHH
T ss_pred cceEEEecCCccHHHHHHHHC----C-CEEEEEEeCCHHHHHHHHHhcccC---CCcceeccchhhhhhccccccchhhH
Confidence 458999999999998777543 1 235899999999888777775321 123466788765421
Q ss_pred ------CCCcccEEEecchhhhhc
Q 022698 185 ------GDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 185 ------~~~~fD~Iv~~~~~~~~~ 202 (293)
....+|+|+..+|...+.
T Consensus 160 ~~~i~~~~~~~Dvl~gGpPCQ~FS 183 (482)
T 3me5_A 160 AEHIRQHIPEHDVLLAGFPCQPFS 183 (482)
T ss_dssp HHHHHHHSCCCSEEEEECCCCCC-
T ss_pred HhhhhhcCCCCCEEEecCCCcchh
Confidence 114689999998876544
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.15 Score=44.40 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=58.5
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------C
Q 022698 111 NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------F 184 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------~ 184 (293)
....++.+||-.|+ +|.++...++..... +++|+++|.+++.++.+++ .+.. .++..+-.+.. .
T Consensus 144 ~~~~~g~~vlV~Ga-~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~ 213 (334)
T 3qwb_A 144 YHVKKGDYVLLFAA-AGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKE----YGAE---YLINASKEDILRQVLKFT 213 (334)
T ss_dssp SCCCTTCEEEESST-TBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHT
T ss_pred ccCCCCCEEEEECC-CCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEEeCCCchHHHHHHHHh
Confidence 34667889999984 233444444333333 4699999999987776654 3422 22222111110 1
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
....+|+|+.+..- ..++.+.+.|++||+++.+.
T Consensus 214 ~~~g~D~vid~~g~-------------------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 214 NGKGVDASFDSVGK-------------------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp TTSCEEEEEECCGG-------------------GGHHHHHHHEEEEEEEEECC
T ss_pred CCCCceEEEECCCh-------------------HHHHHHHHHhccCCEEEEEc
Confidence 13469999976432 23456678999999998854
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.28 E-value=0.28 Score=43.05 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=58.8
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-------
Q 022698 111 NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------- 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 183 (293)
....++.+||-.|++ |.++..+++.+... +++|++++.+++.++.+++ .+.. ..+ |..+..
T Consensus 166 ~~~~~g~~vlV~Gas-ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~--d~~~~~~~~~~~~ 233 (351)
T 1yb5_A 166 ACVKAGESVLVHGAS-GGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAH---EVF--NHREVNYIDKIKK 233 (351)
T ss_dssp SCCCTTCEEEEETCS-SHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS---EEE--ETTSTTHHHHHHH
T ss_pred hCCCCcCEEEEECCC-ChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHH----cCCC---EEE--eCCCchHHHHHHH
Confidence 346678899999963 44444444444433 4699999999987765543 3322 122 222111
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.....+|+|+.+.. . ..+....+.|+++|+++++.
T Consensus 234 ~~~~~~~D~vi~~~G-----------------~--~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 234 YVGEKGIDIIIEMLA-----------------N--VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HHCTTCEEEEEESCH-----------------H--HHHHHHHHHEEEEEEEEECC
T ss_pred HcCCCCcEEEEECCC-----------------h--HHHHHHHHhccCCCEEEEEe
Confidence 11236999997632 1 23556778999999998865
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.24 E-value=0.14 Score=44.98 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=58.4
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC-CCCC------
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV-RSLP------ 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~~~------ 183 (293)
...++.+||-+|+|. |..+..+++. . +++|+++|.+++.++.+++ .|.. .++..+- .+..
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~---~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~i~~~ 232 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKA---Y--GAFVVCTARSPRRLEVAKN----CGAD---VTLVVDPAKEEESSIIER 232 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHH---T--TCEEEEEESCHHHHHHHHH----TTCS---EEEECCTTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH---c--CCEEEEEcCCHHHHHHHHH----hCCC---EEEcCcccccHHHHHHHH
Confidence 356788999999753 4444444443 2 3579999999987776653 3432 2222110 1110
Q ss_pred CC---CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 FG---DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 ~~---~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.. .+.+|+|+.+... ...++...+.|+++|+++.+..
T Consensus 233 ~~~~~g~g~D~vid~~g~------------------~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 233 IRSAIGDLPNVTIDCSGN------------------EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp HHHHSSSCCSEEEECSCC------------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred hccccCCCCCEEEECCCC------------------HHHHHHHHHHHhcCCEEEEEec
Confidence 01 2469999965321 1345667789999999988653
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.23 E-value=2.2 Score=35.99 Aligned_cols=83 Identities=16% Similarity=0.023 Sum_probs=58.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCC-CcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC----------
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGS-LGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF---------- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~-~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 184 (293)
++++|=.|+ +|.++..+++.+.+.|. ..+|+.++.+++.++.+.+.........++.++.+|+.+...
T Consensus 33 ~k~~lVTGa-s~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 111 (287)
T 3rku_A 33 KKTVLITGA-SAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ 111 (287)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred CCEEEEecC-CChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 457887775 56788888887765431 138999999999888777666554223458899999976430
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 112 ~~g~iD~lVnnAG~~ 126 (287)
T 3rku_A 112 EFKDIDILVNNAGKA 126 (287)
T ss_dssp GGCSCCEEEECCCCC
T ss_pred hcCCCCEEEECCCcC
Confidence 124799999986643
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.21 E-value=1 Score=38.17 Aligned_cols=117 Identities=15% Similarity=0.048 Sum_probs=70.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC--HHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC---
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK--KRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG--- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis--~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~--- 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+ ....+...+..+..+ .++.++.+|+.+.. +.
T Consensus 49 ~k~vlVTGa-s~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 123 (294)
T 3r3s_A 49 DRKALVTGG-DSGIGRAAAIAYAREG--ADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKAR 123 (294)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCC--CEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 457887774 6778889999888764 689999987 334444444444444 45888999987632 00
Q ss_pred --CCcccEEEecchhhhhcccc-CcchhhhH-------HHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 --DNYFDVVVSAAFFHTVGKEY-GHRTVEAA-------AERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 --~~~fD~Iv~~~~~~~~~~~~-~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-++.|++|.|.......... ........ .....+.+.+...++++|.++.+.
T Consensus 124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 15789999886543211000 00000000 011235666677888889888754
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.55 Score=41.96 Aligned_cols=102 Identities=8% Similarity=-0.038 Sum_probs=56.5
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------ 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 183 (293)
...++.+||=+|+|. |..+..+++.. ++ +|+++|.++..++.+++. |.. .++..+-.++.
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~i~~~ 277 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHA-----GASKVILSEPSEVRRNLAKEL----GAD---HVIDPTKENFVEAVLDY 277 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHHHc----CCC---EEEcCCCCCHHHHHHHH
Confidence 456788999999743 44444444433 34 899999999987777543 432 22222111110
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.....+|+|+-.-.-.. ......++.+.+.++++|+++++..
T Consensus 278 t~g~g~D~vid~~g~~~-------------~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 278 TNGLGAKLFLEATGVPQ-------------LVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp TTTCCCSEEEECSSCHH-------------HHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred hCCCCCCEEEECCCCcH-------------HHHHHHHHHHHhccCCCcEEEEeCC
Confidence 11236999996422110 0112233333355599999998653
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.22 Score=43.52 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=61.2
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F- 184 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~- 184 (293)
...++.+||-+|+|. |..+..+++... +.+|+++|.+++.++.+++ .|.. .++..+- +.. .
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g----~~~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~-~~~~~v~~~t 235 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS----AARVIAVDLDDDRLALARE----VGAD---AAVKSGA-GAADAIRELT 235 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC----CCEEEEEESCHHHHHHHHH----TTCS---EEEECST-THHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC----CCEEEEEcCCHHHHHHHHH----cCCC---EEEcCCC-cHHHHHHHHh
Confidence 356788999999854 555555555442 4699999999997776654 3432 2222211 110 1
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
....+|+|+-.-.- ...++.+.+.|+++|+++++..
T Consensus 236 ~g~g~d~v~d~~G~------------------~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 236 GGQGATAVFDFVGA------------------QSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp GGGCEEEEEESSCC------------------HHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCCeEEEECCCC------------------HHHHHHHHHHHhcCCEEEEECC
Confidence 12369999864221 2356778889999999998653
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.13 E-value=0.13 Score=45.09 Aligned_cols=96 Identities=20% Similarity=0.169 Sum_probs=58.1
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------ 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 183 (293)
...++.+||=+|+|. |..+..+++.. ++ +|+++|.+++.++.+++. |.. .++..+-.++.
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~-----Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~ 230 (352)
T 3fpc_A 163 NIKLGDTVCVIGIGPVGLMSVAGANHL-----GAGRIFAVGSRKHCCDIALEY----GAT---DIINYKNGDIVEQILKA 230 (352)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTT-----TCSSEEEECCCHHHHHHHHHH----TCC---EEECGGGSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCcEEEEECCCHHHHHHHHHh----CCc---eEEcCCCcCHHHHHHHH
Confidence 456788999998754 44444444432 34 899999999877766553 432 22222111110
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.....+|+|+-...- ...+..+.+.|+|||+++.+.
T Consensus 231 t~g~g~D~v~d~~g~------------------~~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 231 TDGKGVDKVVIAGGD------------------VHTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp TTTCCEEEEEECSSC------------------TTHHHHHHHHEEEEEEEEECC
T ss_pred cCCCCCCEEEECCCC------------------hHHHHHHHHHHhcCCEEEEec
Confidence 112369999964221 134566788999999998754
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.11 E-value=1.5 Score=36.65 Aligned_cols=79 Identities=23% Similarity=0.113 Sum_probs=58.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------CC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------FG 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 185 (293)
++++|=-| |++.++..+++.+.+.| ++|+.+|.+++.++.+.+.....+ .++.++.+|+.+.. -.
T Consensus 9 gKvalVTG-as~GIG~aia~~la~~G--a~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (255)
T 4g81_D 9 GKTALVTG-SARGLGFAYAEGLAAAG--ARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAE 83 (255)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTT--CEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 45555555 55678888999888764 699999999998888777777665 34888999987632 12
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 84 ~G~iDiLVNNAG~~ 97 (255)
T 4g81_D 84 GIHVDILINNAGIQ 97 (255)
T ss_dssp TCCCCEEEECCCCC
T ss_pred CCCCcEEEECCCCC
Confidence 36799999986654
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.26 Score=42.42 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=56.3
Q ss_pred CCCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcc
Q 022698 111 NDWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYF 189 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 189 (293)
....++.+||=+|+|. |..+..+++.. +++|++++ |++.++.+++ .|. -.++ .|... . .+.+
T Consensus 138 ~~~~~g~~VlV~GaG~vG~~a~qlak~~-----Ga~Vi~~~-~~~~~~~~~~----lGa---~~v~-~d~~~--v-~~g~ 200 (315)
T 3goh_A 138 IPLTKQREVLIVGFGAVNNLLTQMLNNA-----GYVVDLVS-ASLSQALAAK----RGV---RHLY-REPSQ--V-TQKY 200 (315)
T ss_dssp SCCCSCCEEEEECCSHHHHHHHHHHHHH-----TCEEEEEC-SSCCHHHHHH----HTE---EEEE-SSGGG--C-CSCE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCEEEEEE-ChhhHHHHHH----cCC---CEEE-cCHHH--h-CCCc
Confidence 3467888999999943 55555555443 36999999 8887777654 342 1222 24222 2 4579
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|+|+-...- ..+..+.+.|+++|+++.+.
T Consensus 201 Dvv~d~~g~-------------------~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 201 FAIFDAVNS-------------------QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp EEEECC--------------------------TTGGGEEEEEEEEEEC
T ss_pred cEEEECCCc-------------------hhHHHHHHHhcCCCEEEEEe
Confidence 999854211 11245678999999998864
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.38 Score=42.47 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=59.8
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-----C-
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-----P- 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~- 183 (293)
...++.+||=.|+|. |..+..+++.. ++ +|+++|.++..++.+++. |.. .++..+-.+. .
T Consensus 179 ~~~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~i~~~ 246 (370)
T 4ej6_A 179 GIKAGSTVAILGGGVIGLLTVQLARLA-----GATTVILSTRQATKRRLAEEV----GAT---ATVDPSAGDVVEAIAGP 246 (370)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEECSCHHHHHHHHHH----TCS---EEECTTSSCHHHHHHST
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHHHc----CCC---EEECCCCcCHHHHHHhh
Confidence 356788999999754 44444444443 34 899999999977766553 432 2221111110 0
Q ss_pred --CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 --FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 --~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
...+.+|+|+-...- ...++.+.+.|++||+++++..
T Consensus 247 ~~~~~gg~Dvvid~~G~------------------~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 247 VGLVPGGVDVVIECAGV------------------AETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp TSSSTTCEEEEEECSCC------------------HHHHHHHHHHEEEEEEEEECSC
T ss_pred hhccCCCCCEEEECCCC------------------HHHHHHHHHHhccCCEEEEEec
Confidence 123479999964211 2456778889999999988653
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.01 E-value=0.31 Score=43.41 Aligned_cols=112 Identities=20% Similarity=0.201 Sum_probs=62.3
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-CC-----C
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-LP-----F 184 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~-----~ 184 (293)
...++.+||-+|+|. |..+..+++... ..+|+++|.+++.++.+++ .|. ..+...-.+ +. .
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~G----a~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLG----AAVVIVGDLNPARLAHAKA----QGF----EIADLSLDTPLHEQIAAL 249 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEEESCHHHHHHHHH----TTC----EEEETTSSSCHHHHHHHH
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC----CCeEEEEcCCHHHHHHHHH----cCC----cEEccCCcchHHHHHHHH
Confidence 456788999999754 555555555432 2379999999997777653 343 222211111 00 1
Q ss_pred -CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 185 -GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 185 -~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
....+|+|+-.-.-...... .... ...++...++.+.+.|++||+++++..
T Consensus 250 t~g~g~Dvvid~~G~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 250 LGEPEVDCAVDAVGFEARGHG--HEGA-KHEAPATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp HSSSCEEEEEECCCTTCBCSS--TTGG-GSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred hCCCCCCEEEECCCCcccccc--cccc-cccchHHHHHHHHHHHhcCCEEEEecc
Confidence 12369999965332100000 0000 000233467788899999999988653
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.088 Score=46.68 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=57.6
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-C-CCCCCc
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-L-PFGDNY 188 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~ 188 (293)
...++.+||-+|+|. |..+..+++.. +++|+++|.|++.++.+++ .|.. .++..+-.+ . .. .+.
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~-~~g 257 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAM-----GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAH-LKS 257 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTT-TTC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHh-hcC
Confidence 456788999999854 44444444432 4689999999998777664 3432 222211100 0 01 146
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+|+|+....-. ..++.+.+.|+++|+++.+..
T Consensus 258 ~Dvvid~~g~~------------------~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 258 FDFILNTVAAP------------------HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp EEEEEECCSSC------------------CCHHHHHTTEEEEEEEEECCC
T ss_pred CCEEEECCCCH------------------HHHHHHHHHhccCCEEEEecc
Confidence 99998653211 123456778999999887654
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.45 Score=41.78 Aligned_cols=98 Identities=17% Similarity=0.081 Sum_probs=60.1
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcE-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC---CCCC---
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGR-VVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV---RSLP--- 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~-v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~---~~~~--- 183 (293)
...++.+||=+|+|. |..+..+++.. +++ |+++|.|++.++.+++. ... -+.+. .|. .++.
T Consensus 176 ~~~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~l-~~~----~~~~~-~~~~~~~~~~~~v 244 (363)
T 3m6i_A 176 GVRLGDPVLICGAGPIGLITMLCAKAA-----GACPLVITDIDEGRLKFAKEI-CPE----VVTHK-VERLSAEESAKKI 244 (363)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHHT-----TCCSEEEEESCHHHHHHHHHH-CTT----CEEEE-CCSCCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHHHh-chh----ccccc-ccccchHHHHHHH
Confidence 356788999998754 44444445443 345 99999999988888765 211 12222 111 0000
Q ss_pred ---CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 ---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 ---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.....+|+|+-...- ...+..+.+.|++||+++++..
T Consensus 245 ~~~t~g~g~Dvvid~~g~------------------~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 245 VESFGGIEPAVALECTGV------------------ESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp HHHTSSCCCSEEEECSCC------------------HHHHHHHHHHSCTTCEEEECCC
T ss_pred HHHhCCCCCCEEEECCCC------------------hHHHHHHHHHhcCCCEEEEEcc
Confidence 123469999964221 1356677889999999998653
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.16 Score=44.34 Aligned_cols=95 Identities=18% Similarity=0.147 Sum_probs=58.2
Q ss_pred CCCCCCCeEEEEcCC--CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----
Q 022698 111 NDWSTVKTALDIGCG--RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----- 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----- 183 (293)
....++.+||-.|++ .|..+..+++.. +++|++++.+++.++.+++. +.. .++..+ .+..
T Consensus 155 ~~~~~g~~VlV~Gasg~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~~----ga~---~v~~~~-~~~~~~v~~ 221 (342)
T 4eye_A 155 GQLRAGETVLVLGAAGGIGTAAIQIAKGM-----GAKVIAVVNRTAATEFVKSV----GAD---IVLPLE-EGWAKAVRE 221 (342)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEESSGGGHHHHHHH----TCS---EEEESS-TTHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHhc----CCc---EEecCc-hhHHHHHHH
Confidence 346678899999862 244444444433 46999999999877766653 432 222222 2211
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.....+|+|+.+..- ..+..+.+.|+++|+++++.
T Consensus 222 ~~~~~g~Dvvid~~g~-------------------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 222 ATGGAGVDMVVDPIGG-------------------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp HTTTSCEEEEEESCC---------------------CHHHHHHTEEEEEEEEEC-
T ss_pred HhCCCCceEEEECCch-------------------hHHHHHHHhhcCCCEEEEEE
Confidence 112369999975321 13456778999999998854
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.86 E-value=2.6 Score=35.13 Aligned_cols=80 Identities=21% Similarity=0.195 Sum_probs=57.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|++++.++..++...+.....+...++.++.+|+.+.. +.
T Consensus 32 ~k~vlVTG-asggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 32 DRLALVTG-ASGGIGAAVARALVQQG--LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp TCEEEEES-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCC--CEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 45677776 57888999998887764 6999999998877766666555554456888899987632 00
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-+++|+||.+...
T Consensus 109 ~g~iD~vi~~Ag~ 121 (279)
T 1xg5_A 109 HSGVDICINNAGL 121 (279)
T ss_dssp HCCCSEEEECCCC
T ss_pred CCCCCEEEECCCC
Confidence 1368999988654
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.54 Score=41.43 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=59.6
Q ss_pred CCCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC--CCCC---
Q 022698 111 NDWSTVKTALDIGCGR-GILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV--RSLP--- 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~--~~~~--- 183 (293)
....++.+||-+|+|. |..+..+++.. ++ +|+++|.|++.++.+++. |.. .++..+- .++.
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~avqla~~~-----Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~v 253 (373)
T 2fzw_A 186 AKLEPGSVCAVFGLGGVGLAVIMGCKVA-----GASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVL 253 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHH-----TCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHHHHc----CCc---eEeccccccccHHHHH
Confidence 3456788999999754 44444444443 34 899999999977776543 432 2221110 1110
Q ss_pred --CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC-cEEEEEcC
Q 022698 184 --FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG-GVGVVWDL 238 (293)
Q Consensus 184 --~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 238 (293)
...+.+|+|+-...- ...++.+.+.|+++ |+++++..
T Consensus 254 ~~~~~~g~D~vid~~g~------------------~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 254 IEMTDGGVDYSFECIGN------------------VKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp HHHTTSCBSEEEECSCC------------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHhCCCCCEEEECCCc------------------HHHHHHHHHhhccCCcEEEEEec
Confidence 112469999865321 13466778899999 99988654
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=0.95 Score=45.36 Aligned_cols=134 Identities=9% Similarity=-0.003 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC------------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL------------ 182 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~------------ 182 (293)
...+++|+.||.|.++.-+.+. |....+.++|+++.+.+.-+.|.. ...++..|+.++
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~A----G~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~~di~~~ 608 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQA----GISDTLWAIEMWDPAAQAFRLNNP------GSTVFTEDCNILLKLVMAGETTNS 608 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHH----TSEEEEEEECSSHHHHHHHHHHCT------TSEEECSCHHHHHHHHHHTCSBCT
T ss_pred CCCeEEEeccCccHHHHHHHHC----CCCceEEEEECCHHHHHHHHHhCC------CCccccccHHHHhhhccchhhhhh
Confidence 3458999999999999877654 101268899999998887777642 134555553211
Q ss_pred ---CC-CCCcccEEEecchhhhhccccCcchhhhHHHH----HHHHHHHHHcccCCcEEEE--EcCCC------chHHHH
Q 022698 183 ---PF-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER----MRVLGEMVRVLKPGGVGVV--WDLLH------VPEYVR 246 (293)
Q Consensus 183 ---~~-~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~LkpgG~l~~--~~~~~------~~~~~~ 246 (293)
.+ ..+.+|+|+..+|...+..- +........+. ..-+-++.+.++|.-+++= .+... ...+..
T Consensus 609 ~~~~lp~~~~vDll~GGpPCQ~FS~a-g~~~~~~~~d~R~~L~~~~~riv~~~rPk~~llENV~glls~~~~~~~~~i~~ 687 (1002)
T 3swr_A 609 RGQRLPQKGDVEMLCGGPPCQGFSGM-NRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLR 687 (1002)
T ss_dssp TCCBCCCTTTCSEEEECCCCTTCCSS-SCCCHHHHHHHTTSHHHHHHHHHHHHCCSEEEEEEEGGGGTTGGGHHHHHHHH
T ss_pred hhhhcccCCCeeEEEEcCCCcchhhh-CCCCCCcccchhhHHHHHHHHHHHHhCCCEEEEeccHHHhccCcchHHHHHHH
Confidence 01 13579999999987765421 11100001121 1223344456788544331 11111 235677
Q ss_pred HHHHcCCcceEEe
Q 022698 247 RLQELKMEDIRVS 259 (293)
Q Consensus 247 ~l~~~gf~~~~~~ 259 (293)
.|.+.||......
T Consensus 688 ~L~~lGY~v~~~v 700 (1002)
T 3swr_A 688 CLVRMGYQCTFGV 700 (1002)
T ss_dssp HHHHHTCEEEEEE
T ss_pred HHHhcCCeEEEEE
Confidence 7888999754443
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=92.54 E-value=2.2 Score=35.74 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=58.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.|+ +|.++.++++.+.+.| .+|+.+|.+++.++.+.+.....+.. .++.++.+|+.+.. +
T Consensus 11 ~k~vlVTGa-s~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (281)
T 3svt_A 11 DRTYLVTGG-GSGIGKGVAAGLVAAG--ASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA 87 (281)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457777774 6778888988887764 69999999998887777666654421 26889999998632 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|...
T Consensus 88 ~~g~id~lv~nAg~ 101 (281)
T 3svt_A 88 WHGRLHGVVHCAGG 101 (281)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCCCEEEECCCc
Confidence 01468999988664
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.65 Score=40.40 Aligned_cols=93 Identities=14% Similarity=0.092 Sum_probs=58.3
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------
Q 022698 112 DWSTVKTALDIGC--GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------ 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 183 (293)
.+.++.+||-.|+ |.|..+..+++.. +++|+++|.+++.++.+++ .+.. .++ |..+..
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~-----G~~Vi~~~~~~~~~~~~~~----~ga~---~~~--d~~~~~~~~~~~ 228 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLF-----GARVIATAGSEDKLRRAKA----LGAD---ETV--NYTHPDWPKEVR 228 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHH----HTCS---EEE--ETTSTTHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHh----cCCC---EEE--cCCcccHHHHHH
Confidence 4567889999997 3455555444432 3699999999988777653 2322 122 222111
Q ss_pred --CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 --FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 --~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.....+|+|+.+.. . ..++.+.+.|+++|+++.+.
T Consensus 229 ~~~~~~~~d~vi~~~g-~------------------~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 229 RLTGGKGADKVVDHTG-A------------------LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp HHTTTTCEEEEEESSC-S------------------SSHHHHHHHEEEEEEEEESS
T ss_pred HHhCCCCceEEEECCC-H------------------HHHHHHHHhhccCCEEEEEe
Confidence 11246999997643 1 13456678899999998854
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.50 E-value=2.6 Score=35.04 Aligned_cols=79 Identities=20% Similarity=0.051 Sum_probs=57.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.+++||=.| |+|.++..+++.+.+.| .+|+++|.++..++...+.....+ .++.++.+|+.+.. +
T Consensus 30 ~~k~vlITG-asggIG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 104 (272)
T 1yb1_A 30 TGEIVLITG-AGHGIGRLTAYEFAKLK--SKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA 104 (272)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCC--CEEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHH
Confidence 346787777 56789999999888764 699999999987776665555543 35889999987632 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-+++|+||.+...
T Consensus 105 ~~g~iD~li~~Ag~ 118 (272)
T 1yb1_A 105 EIGDVSILVNNAGV 118 (272)
T ss_dssp HTCCCSEEEECCCC
T ss_pred HCCCCcEEEECCCc
Confidence 01468999988654
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.50 E-value=2.5 Score=32.80 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=68.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhc-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----C-CCCcc
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKT-GSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----F-GDNYF 189 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~-~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~f 189 (293)
+.+|+=+|+ |.++..+++.+.+. | .+|+++|.+++.++.+++ .+ +.++.+|..+.. . .-..+
T Consensus 39 ~~~v~IiG~--G~~G~~~a~~L~~~~g--~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~~~~~a 106 (183)
T 3c85_A 39 HAQVLILGM--GRIGTGAYDELRARYG--KISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERILDTGHV 106 (183)
T ss_dssp TCSEEEECC--SHHHHHHHHHHHHHHC--SCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTBCSCCCC
T ss_pred CCcEEEECC--CHHHHHHHHHHHhccC--CeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhccCCCCC
Confidence 457888875 77888888877654 4 489999999987655432 23 345667765421 1 13468
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
|+|+...+-. .....+-...+.+.|++.++... ..++..+.+.+.|-..+
T Consensus 107 d~vi~~~~~~---------------~~~~~~~~~~~~~~~~~~ii~~~--~~~~~~~~l~~~G~~~v 156 (183)
T 3c85_A 107 KLVLLAMPHH---------------QGNQTALEQLQRRNYKGQIAAIA--EYPDQLEGLLESGVDAA 156 (183)
T ss_dssp CEEEECCSSH---------------HHHHHHHHHHHHTTCCSEEEEEE--SSHHHHHHHHHHTCSEE
T ss_pred CEEEEeCCCh---------------HHHHHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHcCCCEE
Confidence 9998753311 11122223455567777766643 34566678888886644
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=1.9 Score=35.37 Aligned_cols=79 Identities=20% Similarity=0.079 Sum_probs=56.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++.+++.++...+.....+ .++.++.+|+.+.. +.
T Consensus 7 ~k~~lVTG-as~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 81 (247)
T 2jah_A 7 GKVALITG-ASSGIGEATARALAAEG--AAVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEA 81 (247)
T ss_dssp TCEEEEES-CSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45777777 46778999998887764 699999999887776665555443 34888999987632 00
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|..+.
T Consensus 82 ~g~id~lv~nAg~~ 95 (247)
T 2jah_A 82 LGGLDILVNNAGIM 95 (247)
T ss_dssp HSCCSEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 14689999886543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.42 Score=42.27 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=60.2
Q ss_pred CCCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC--CCCCC----
Q 022698 111 NDWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD--VRSLP---- 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d--~~~~~---- 183 (293)
....++.+||=+|+|. |..+..+++... ..+|+++|.+++.++.++ ..|.. .++... -.++.
T Consensus 189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~G----a~~Vi~~~~~~~~~~~a~----~lGa~---~vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 189 AKVEPGSNVAIFGLGTVGLAVAEGAKTAG----ASRIIGIDIDSKKYETAK----KFGVN---EFVNPKDHDKPIQEVIV 257 (378)
T ss_dssp TCCCTTCCEEEECCSHHHHHHHHHHHHHT----CSCEEEECSCTTHHHHHH----TTTCC---EEECGGGCSSCHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC----CCeEEEEcCCHHHHHHHH----HcCCc---EEEccccCchhHHHHHH
Confidence 3466788999999854 555555555432 138999999999777654 33432 222211 11110
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC-cEEEEEcC
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG-GVGVVWDL 238 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 238 (293)
...+.+|+|+-...- ...+..+.+.|++| |+++++..
T Consensus 258 ~~~~gg~D~vid~~g~------------------~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 258 DLTDGGVDYSFECIGN------------------VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp HHTTSCBSEEEECSCC------------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred HhcCCCCCEEEECCCC------------------HHHHHHHHHHhhccCCEEEEEcc
Confidence 123479999965221 24567788899997 99988653
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.41 E-value=0.44 Score=42.03 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=59.1
Q ss_pred CCCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC--CCCC---
Q 022698 111 NDWSTVKTALDIGCGR-GILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV--RSLP--- 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~--~~~~--- 183 (293)
....++.+||-+|+|. |..+..+++.. ++ +|+++|.|++.++.+++ .|.. .++..+- .++.
T Consensus 188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-----Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~ 255 (374)
T 1cdo_A 188 AKVEPGSTCAVFGLGAVGLAAVMGCHSA-----GAKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVL 255 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHH
Confidence 3456788999999643 44444444443 34 89999999987776653 3432 2221110 0110
Q ss_pred --CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC-cEEEEEcC
Q 022698 184 --FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG-GVGVVWDL 238 (293)
Q Consensus 184 --~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 238 (293)
...+.+|+|+.+..- ...+..+.+.|+++ |+++++..
T Consensus 256 ~~~~~~g~D~vid~~g~------------------~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 256 SKMTNGGVDFSLECVGN------------------VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp HHHHTSCBSEEEECSCC------------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHhCCCCCEEEECCCC------------------HHHHHHHHHHhhcCCcEEEEEcC
Confidence 112369999865321 13466778899999 99988654
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=2.5 Score=34.88 Aligned_cols=78 Identities=19% Similarity=0.146 Sum_probs=56.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|++++.+++.++...+.....+ .++.++.+|+.+.. +.
T Consensus 9 ~k~vlVTG-as~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (260)
T 2ae2_A 9 GCTALVTG-GSRGIGYGIVEELASLG--ASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH 83 (260)
T ss_dssp TCEEEEES-CSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45777666 57788999998887764 699999999887776555554433 35888999987632 11
Q ss_pred C-CcccEEEecchh
Q 022698 186 D-NYFDVVVSAAFF 198 (293)
Q Consensus 186 ~-~~fD~Iv~~~~~ 198 (293)
- ++.|++|.|...
T Consensus 84 ~~g~id~lv~~Ag~ 97 (260)
T 2ae2_A 84 FHGKLNILVNNAGI 97 (260)
T ss_dssp TTTCCCEEEECCCC
T ss_pred cCCCCCEEEECCCC
Confidence 1 579999988654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.31 E-value=2 Score=36.22 Aligned_cols=78 Identities=22% Similarity=0.101 Sum_probs=57.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| ++|+.+|.+++.++...+.....+ .++.++.+|+.+.. + .
T Consensus 28 ~k~~lVTGa-s~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (283)
T 3v8b_A 28 SPVALITGA-GSGIGRATALALAADG--VTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLK 102 (283)
T ss_dssp CCEEEEESC-SSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456777774 5678888988887764 699999999988777766655443 45889999997632 1 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|..+
T Consensus 103 ~g~iD~lVnnAg~ 115 (283)
T 3v8b_A 103 FGHLDIVVANAGI 115 (283)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCCCEEEECCCC
Confidence 1479999988665
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.30 E-value=0.53 Score=41.53 Aligned_cols=98 Identities=13% Similarity=0.159 Sum_probs=58.7
Q ss_pred CCCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC--CCCC---
Q 022698 111 NDWSTVKTALDIGCGR-GILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV--RSLP--- 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~--~~~~--- 183 (293)
....++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++ .|.. .++..+- .++.
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-----Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~ 254 (374)
T 2jhf_A 187 AKVTQGSTCAVFGLGGVGLSVIMGCKAA-----GAARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVL 254 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHH
Confidence 3456788999999653 44444444433 34 89999999987776643 3432 2221110 1110
Q ss_pred --CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC-cEEEEEcC
Q 022698 184 --FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG-GVGVVWDL 238 (293)
Q Consensus 184 --~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 238 (293)
...+.+|+|+-...- ...+..+.+.|+++ |+++++..
T Consensus 255 ~~~~~~g~D~vid~~g~------------------~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 255 TEMSNGGVDFSFEVIGR------------------LDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp HHHTTSCBSEEEECSCC------------------HHHHHHHHHHBCTTTCEEEECSC
T ss_pred HHHhCCCCcEEEECCCC------------------HHHHHHHHHHhhcCCcEEEEecc
Confidence 112469999865321 13456778899999 99988653
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.27 E-value=2.4 Score=35.45 Aligned_cols=117 Identities=17% Similarity=0.119 Sum_probs=72.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC------------HHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK------------KRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis------------~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.+|.+ ...++.+.......+ .++.++.+|+.+..
T Consensus 10 gk~vlVTGa-s~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 10 DKVVLVTGG-ARGQGRSHAVKLAEEG--ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA 84 (287)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCC--CeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence 457777775 5678888888887764 699999987 666666665555544 45899999998642
Q ss_pred -----CC-----CCcccEEEecchhhhhccccCcchhhh-----HHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 -----FG-----DNYFDVVVSAAFFHTVGKEYGHRTVEA-----AAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 -----~~-----~~~fD~Iv~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+. -++.|++|.|..+.....+...+.... -.....+.+.+...++.+|.++.+.
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 00 147899999866533221100010000 0112235566677788889887754
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.31 Score=42.88 Aligned_cols=97 Identities=15% Similarity=0.066 Sum_probs=59.4
Q ss_pred CCCCCCCeEEEEcC--CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----
Q 022698 111 NDWSTVKTALDIGC--GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----- 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----- 183 (293)
....++.+||-.|+ |.|..+..+++.. +++|++++.+++.++.+++ .|.. .++..+-.++.
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-----Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~ 226 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKA-----KCHVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQ 226 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHH
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhC-----CCEEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHH
Confidence 34567889999983 3455555555443 3699999999887776654 3432 22222111110
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
...+.+|+|+.+..- ..++.+.+.|+++|+++++..
T Consensus 227 ~~~~g~D~vid~~g~-------------------~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 227 EYPEGVDVVYESVGG-------------------AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp HCTTCEEEEEECSCT-------------------HHHHHHHHHEEEEEEEEECCC
T ss_pred hcCCCCCEEEECCCH-------------------HHHHHHHHHHhcCCEEEEEeC
Confidence 112469999976321 345667789999999988653
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=92.24 E-value=2 Score=35.46 Aligned_cols=76 Identities=21% Similarity=0.162 Sum_probs=54.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+|.+++.++...+.. + .++.++.+|+.+.. + .
T Consensus 8 ~k~vlVTG-as~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~v~~~~~~~~~~ 79 (259)
T 4e6p_A 8 GKSALITG-SARGIGRAFAEAYVREG--ATVAIADIDIERARQAAAEI---G--PAAYAVQMDVTRQDSIDAAIAATVEH 79 (259)
T ss_dssp TCEEEEET-CSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh---C--CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 45788777 56788889998887764 69999999988766554443 2 34788999997632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 80 ~g~id~lv~~Ag~~ 93 (259)
T 4e6p_A 80 AGGLDILVNNAALF 93 (259)
T ss_dssp SSSCCEEEECCCCC
T ss_pred cCCCCEEEECCCcC
Confidence 24799999986653
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.23 E-value=0.65 Score=40.87 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=57.9
Q ss_pred CCCeEEEEc-CCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-----CCCCC
Q 022698 115 TVKTALDIG-CGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-----PFGDN 187 (293)
Q Consensus 115 ~~~~vLDiG-~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~ 187 (293)
++.+||=.| +|. |..+..+++.+. +++|+++|.+++.++.+++ .|.. .++... .++ ....+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~----g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~-~~~~~~v~~~~~~ 238 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT----DLTVIATASRPETQEWVKS----LGAH---HVIDHS-KPLAAEVAALGLG 238 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC----CSEEEEECSSHHHHHHHHH----TTCS---EEECTT-SCHHHHHHTTCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHHHH----cCCC---EEEeCC-CCHHHHHHHhcCC
Confidence 567899888 443 566666665432 4699999999987776654 3432 222111 111 01235
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.+|+|+-+.. -...+..+.++|+++|+++++.
T Consensus 239 g~Dvvid~~g------------------~~~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 239 APAFVFSTTH------------------TDKHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp CEEEEEECSC------------------HHHHHHHHHHHSCTTCEEEECS
T ss_pred CceEEEECCC------------------chhhHHHHHHHhcCCCEEEEEC
Confidence 7999986421 1245677888999999998853
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.6 Score=41.14 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=59.9
Q ss_pred CCCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC--CCCC---
Q 022698 111 NDWSTVKTALDIGCGR-GILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV--RSLP--- 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~--~~~~--- 183 (293)
....++.+||-+|+|. |..+..+++.. ++ +|+++|.|++.++.+++ .|.. .++..+- .++.
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i 254 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCKAA-----GASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVI 254 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHH-----TCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHH
Confidence 3466788999999754 44455555443 34 89999999987776653 3432 2221110 1110
Q ss_pred --CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC-cEEEEEcC
Q 022698 184 --FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG-GVGVVWDL 238 (293)
Q Consensus 184 --~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 238 (293)
...+.+|+|+-...- ...+..+.+.|+++ |+++.+..
T Consensus 255 ~~~t~gg~Dvvid~~g~------------------~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 255 CEKTNGGVDYAVECAGR------------------IETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp HHHTTSCBSEEEECSCC------------------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred HHHhCCCCCEEEECCCC------------------HHHHHHHHHHHhcCCCEEEEEcc
Confidence 112479999964221 23466778899999 99988653
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.15 E-value=0.92 Score=39.03 Aligned_cols=101 Identities=18% Similarity=0.034 Sum_probs=56.9
Q ss_pred CCCCCCCeEEEEc-CCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-CCCCCC
Q 022698 111 NDWSTVKTALDIG-CGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-LPFGDN 187 (293)
Q Consensus 111 ~~~~~~~~vLDiG-~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 187 (293)
....++.+||=+| +|. |..+..+++.. +++|++++ ++..++.++ ..|.. .++..+-.+ ....-.
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~-----Ga~vi~~~-~~~~~~~~~----~lGa~---~~i~~~~~~~~~~~~~ 214 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQK-----GTTVITTA-SKRNHAFLK----ALGAE---QCINYHEEDFLLAIST 214 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEE-CHHHHHHHH----HHTCS---EEEETTTSCHHHHCCS
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHc-----CCEEEEEe-ccchHHHHH----HcCCC---EEEeCCCcchhhhhcc
Confidence 3467788999886 333 55555555443 36899987 555454443 34542 222222111 111114
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchH
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPE 243 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 243 (293)
.+|+|+-.-. . ..+....+.|+++|+++.+.....+.
T Consensus 215 g~D~v~d~~g-----------------~--~~~~~~~~~l~~~G~iv~~g~~~~~~ 251 (321)
T 3tqh_A 215 PVDAVIDLVG-----------------G--DVGIQSIDCLKETGCIVSVPTITAGR 251 (321)
T ss_dssp CEEEEEESSC-----------------H--HHHHHHGGGEEEEEEEEECCSTTHHH
T ss_pred CCCEEEECCC-----------------c--HHHHHHHHhccCCCEEEEeCCCCchh
Confidence 6999986421 1 12266788999999999876544333
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.12 E-value=0.49 Score=40.85 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=59.7
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-------
Q 022698 111 NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------- 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 183 (293)
....++.+||-.|+ +|.++..+++.+... +++|+++|.+++.++.+++ .+.. ... |..+..
T Consensus 136 ~~~~~g~~vlV~Ga-~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~----~g~~---~~~--~~~~~~~~~~~~~ 203 (327)
T 1qor_A 136 YEIKPDEQFLFHAA-AGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAW---QVI--NYREEDLVERLKE 203 (327)
T ss_dssp SCCCTTCEEEESST-TBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCS---EEE--ETTTSCHHHHHHH
T ss_pred hCCCCCCEEEEECC-CCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC---EEE--ECCCccHHHHHHH
Confidence 34667889999884 344555554444433 3699999999987776654 2321 122 222111
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.....+|+|+.+.. . ..++.+.+.|+++|+++.+..
T Consensus 204 ~~~~~~~D~vi~~~g----~---------------~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 204 ITGGKKVRVVYDSVG----R---------------DTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp HTTTCCEEEEEECSC----G---------------GGHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCceEEEECCc----h---------------HHHHHHHHHhcCCCEEEEEec
Confidence 11236999997743 1 234667789999999988653
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.04 E-value=1.4 Score=36.59 Aligned_cols=117 Identities=14% Similarity=0.041 Sum_probs=69.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEE-eCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGL-DCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~v-Dis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.+ +.+++..+...+.....+ .++.++.+|+.+.. +.
T Consensus 8 ~k~vlVTGa-s~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (259)
T 3edm_A 8 NRTIVVAGA-GRDIGRACAIRFAQEG--ANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAAD 82 (259)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 557777775 5668888988887764 588887 677776666655555444 45889999998632 10
Q ss_pred -CCcccEEEecchhh-hhccccCcchhhh-------HHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 -DNYFDVVVSAAFFH-TVGKEYGHRTVEA-------AAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~-~~~~~~~~~~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-++.|++|.|.... ............. -.....+.+.+.+.++++|.++.+.
T Consensus 83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 14789999886433 1110000000000 0112235566667777788877743
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=91.83 E-value=3 Score=34.61 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=57.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-CCCcc
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-GDNYF 189 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~f 189 (293)
++++|=.| |+|.++..+++.+.+.| ++|+.+|.+++.++...+.....+...++.++.+|+.+.. . .-++.
T Consensus 10 ~k~~lVTG-as~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 10 GKTALVTG-STAGIGKAIATSLVAEG--ANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 45677666 56778889998887764 6999999999888776666655443345788889987632 1 12578
Q ss_pred cEEEecchhh
Q 022698 190 DVVVSAAFFH 199 (293)
Q Consensus 190 D~Iv~~~~~~ 199 (293)
|++|.|....
T Consensus 87 d~lv~nAg~~ 96 (267)
T 3t4x_A 87 DILINNLGIF 96 (267)
T ss_dssp SEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999886543
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.83 E-value=1.2 Score=36.96 Aligned_cols=80 Identities=19% Similarity=0.093 Sum_probs=54.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|++++.++...+...+.........++.++.+|+.+.. +.
T Consensus 7 ~k~vlVTG-as~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 7 GKVALVTG-AAQGIGRAFAEALLLKG--AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 45677777 56788899998887764 6999999998766655444332211235888999987632 00
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|...
T Consensus 84 ~g~id~lv~~Ag~ 96 (267)
T 2gdz_A 84 FGRLDILVNNAGV 96 (267)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1468999988654
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.82 E-value=1.5 Score=36.35 Aligned_cols=78 Identities=21% Similarity=0.166 Sum_probs=54.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeC-CHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDC-KKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDi-s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
+++||=.| |+|.++..+++.+.+.| .+|++++. ++..++...+.....+ .++.++.+|+.+.. +.
T Consensus 21 ~k~vlItG-asggiG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 95 (274)
T 1ja9_A 21 GKVALTTG-AGRGIGRGIAIELGRRG--ASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVS 95 (274)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCC--CEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 45777665 57889999999888764 68999998 7776665555554443 34888999987632 10
Q ss_pred -CCcccEEEecchh
Q 022698 186 -DNYFDVVVSAAFF 198 (293)
Q Consensus 186 -~~~fD~Iv~~~~~ 198 (293)
-+.+|+|+.+...
T Consensus 96 ~~~~~d~vi~~Ag~ 109 (274)
T 1ja9_A 96 HFGGLDFVMSNSGM 109 (274)
T ss_dssp HHSCEEEEECCCCC
T ss_pred HcCCCCEEEECCCC
Confidence 1368999987654
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.78 E-value=0.053 Score=47.51 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=58.0
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc----CCCCCCCC-
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG----DVRSLPFG- 185 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~----d~~~~~~~- 185 (293)
.. ++.+||-+|+|. |..+..+++.. .++++|+++|.|++.++.+++. |.. .++.. |... ...
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~---~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~-~~~~ 235 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKAL---MKNITIVGISRSKKHRDFALEL----GAD---YVSEMKDAESLIN-KLTD 235 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHH---CTTCEEEEECSCHHHHHHHHHH----TCS---EEECHHHHHHHHH-HHHT
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHh---cCCCEEEEEeCCHHHHHHHHHh----CCC---EEeccccchHHHH-Hhhc
Confidence 45 788999999853 44444444443 1125899999999977776543 322 12211 1100 011
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
...+|+|+....- ...++.+.+.|+++|+++.+.
T Consensus 236 g~g~D~vid~~g~------------------~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 236 GLGASIAIDLVGT------------------EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp TCCEEEEEESSCC------------------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCccEEEECCCC------------------hHHHHHHHHHhhcCCEEEEeC
Confidence 2369999965321 134567788999999998754
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.78 E-value=2.8 Score=34.47 Aligned_cols=77 Identities=26% Similarity=0.172 Sum_probs=54.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----C
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG-----D 186 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 186 (293)
+++|=.| |+|.++..+++.+.+.| .+|++++.++..++...+.....+ .++.++.+|+.+.. +. -
T Consensus 3 k~vlVTG-as~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~ 77 (256)
T 1geg_A 3 KVALVTG-AGQGIGKAIALRLVKDG--FAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTL 77 (256)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4566666 56778999999887764 699999999887766655554443 34888999987632 10 1
Q ss_pred CcccEEEecchh
Q 022698 187 NYFDVVVSAAFF 198 (293)
Q Consensus 187 ~~fD~Iv~~~~~ 198 (293)
++.|++|.|...
T Consensus 78 g~id~lv~nAg~ 89 (256)
T 1geg_A 78 GGFDVIVNNAGV 89 (256)
T ss_dssp TCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 479999998654
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=91.76 E-value=0.7 Score=39.08 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=43.3
Q ss_pred EcCCCCCCCCCCcccEEEecchhhhhccccCcc-h--hhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc----hHHHHHH
Q 022698 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHR-T--VEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV----PEYVRRL 248 (293)
Q Consensus 176 ~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~~l 248 (293)
..|+.. |...+++|+|+++-.-... ++. . .+.......+++.+..+|+|||.+++--+... +++...+
T Consensus 195 ~lDfg~-p~~~~k~DvV~SDMApn~s----Gh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~L 269 (320)
T 2hwk_A 195 RLDLGI-PGDVPKYDIIFVNVRTPYK----YHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAI 269 (320)
T ss_dssp CGGGCS-CTTSCCEEEEEEECCCCCC----SCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHH
T ss_pred ccccCC-ccccCcCCEEEEcCCCCCC----CccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHH
Confidence 455544 3233779999997332111 111 0 11111223356677799999999998555444 3344444
Q ss_pred HHcCCcceEEee
Q 022698 249 QELKMEDIRVSE 260 (293)
Q Consensus 249 ~~~gf~~~~~~~ 260 (293)
+.-|+.+++.+
T Consensus 270 -aR~F~~Vr~vK 280 (320)
T 2hwk_A 270 -ARQFKFSRVCK 280 (320)
T ss_dssp -HTTEEEEEEEC
T ss_pred -HHhcceeeeeC
Confidence 44477666654
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.75 E-value=3 Score=34.50 Aligned_cols=80 Identities=15% Similarity=0.041 Sum_probs=55.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+.........++.++.+|+.+.. +.
T Consensus 13 ~k~vlVTGa-s~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 13 DRVVLITGG-GSGLGRATAVRLAAEG--AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457777774 6788889998887764 6999999999877766555443311234888999987632 10
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|...
T Consensus 90 ~g~id~lv~nAg~ 102 (267)
T 1iy8_A 90 FGRIDGFFNNAGI 102 (267)
T ss_dssp HSCCSEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 1468999998654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.74 E-value=3.5 Score=34.22 Aligned_cols=68 Identities=10% Similarity=0.009 Sum_probs=51.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
++||=.| + |.++..+++.+.+.| .+|++++.++....... . .+++++.+|+.++. -..+|+|+.+.
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~----~----~~~~~~~~D~~d~~--~~~~d~vi~~a 71 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQG--WRIIGTSRNPDQMEAIR----A----SGAEPLLWPGEEPS--LDGVTHLLIST 71 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGT--CEEEEEESCGGGHHHHH----H----TTEEEEESSSSCCC--CTTCCEEEECC
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCC--CEEEEEEcChhhhhhHh----h----CCCeEEEecccccc--cCCCCEEEECC
Confidence 5799999 4 999999999987664 59999999987543322 1 23889999998865 45689999875
Q ss_pred hh
Q 022698 197 FF 198 (293)
Q Consensus 197 ~~ 198 (293)
..
T Consensus 72 ~~ 73 (286)
T 3ius_A 72 AP 73 (286)
T ss_dssp CC
T ss_pred Cc
Confidence 54
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.74 E-value=2.7 Score=31.54 Aligned_cols=113 Identities=9% Similarity=0.021 Sum_probs=68.9
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC-HHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK-KRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDV 191 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis-~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~ 191 (293)
.+|+=+|+ |.++..+++.+.+.| .+|+++|.+ ++..+....... ..+.++.+|..+.. ..-...|.
T Consensus 4 ~~vlI~G~--G~vG~~la~~L~~~g--~~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~ 74 (153)
T 1id1_A 4 DHFIVCGH--SILAINTILQLNQRG--QNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRA 74 (153)
T ss_dssp SCEEEECC--SHHHHHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred CcEEEECC--CHHHHHHHHHHHHCC--CCEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHcChhhCCE
Confidence 46777764 889999998887653 589999997 443433332211 12678889886532 11246898
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcc
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMED 255 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~ 255 (293)
|++...-. .....+....+.+.|...++..- ..++..+.+++.|-..
T Consensus 75 vi~~~~~d---------------~~n~~~~~~a~~~~~~~~ii~~~--~~~~~~~~l~~~G~~~ 121 (153)
T 1id1_A 75 ILALSDND---------------ADNAFVVLSAKDMSSDVKTVLAV--SDSKNLNKIKMVHPDI 121 (153)
T ss_dssp EEECSSCH---------------HHHHHHHHHHHHHTSSSCEEEEC--SSGGGHHHHHTTCCSE
T ss_pred EEEecCCh---------------HHHHHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHcCCCE
Confidence 88763321 22344455556666766665522 3455566777888653
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.66 E-value=0.35 Score=42.25 Aligned_cols=97 Identities=15% Similarity=0.066 Sum_probs=59.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC---CCC-----
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR---SLP----- 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~---~~~----- 183 (293)
...++.+||-.|++ |.++..+++..... +++|+++|.+++.++.+++ .+.. .++ |.. +..
T Consensus 166 ~~~~g~~vlV~Ga~-ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~----~g~~---~~~--d~~~~~~~~~~~~~ 233 (347)
T 2hcy_A 166 NLMAGHWVAISGAA-GGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRS----IGGE---VFI--DFTKEKDIVGAVLK 233 (347)
T ss_dssp TCCTTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHH----TTCC---EEE--ETTTCSCHHHHHHH
T ss_pred CCCCCCEEEEECCC-chHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH----cCCc---eEE--ecCccHhHHHHHHH
Confidence 45678899999973 34444444444333 3699999999887765543 3321 122 322 110
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
...+.+|+|+.+... ...++.+.+.|+++|+++.+..
T Consensus 234 ~~~~~~D~vi~~~g~------------------~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 234 ATDGGAHGVINVSVS------------------EAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp HHTSCEEEEEECSSC------------------HHHHHHHTTSEEEEEEEEECCC
T ss_pred HhCCCCCEEEECCCc------------------HHHHHHHHHHHhcCCEEEEEeC
Confidence 011269999976431 1356777889999999988654
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=91.62 E-value=2.8 Score=34.94 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=58.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++.+|=-|+ ++.++..+++.+.+. +++|+.+|.+++.++...+..+..+ .++.++.+|+.+.. + .
T Consensus 7 gKvalVTGa-s~GIG~aiA~~la~~--Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 7 NKVVIVTGA-GSGIGRAIAKKFALN--DSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456776665 556788888888776 4699999999999988888777665 45889999998632 0 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|..+
T Consensus 82 ~G~iDiLVNNAGi 94 (254)
T 4fn4_A 82 YSRIDVLCNNAGI 94 (254)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCcc
Confidence 2679999988653
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.61 E-value=2.6 Score=35.13 Aligned_cols=78 Identities=22% Similarity=0.192 Sum_probs=56.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|++++.+++.++...+.....+ .++.++.+|+.+.. +.
T Consensus 21 ~k~vlVTG-as~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 95 (273)
T 1ae1_A 21 GTTALVTG-GSKGIGYAIVEELAGLG--ARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV 95 (273)
T ss_dssp TCEEEEES-CSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 45777777 46788999999887764 699999999987776655554443 34888999987632 10
Q ss_pred -CCcccEEEecchh
Q 022698 186 -DNYFDVVVSAAFF 198 (293)
Q Consensus 186 -~~~fD~Iv~~~~~ 198 (293)
.++.|++|.|...
T Consensus 96 ~~g~id~lv~nAg~ 109 (273)
T 1ae1_A 96 FDGKLNILVNNAGV 109 (273)
T ss_dssp TTSCCCEEEECCCC
T ss_pred cCCCCcEEEECCCC
Confidence 1678999998654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=91.57 E-value=3 Score=34.43 Aligned_cols=78 Identities=19% Similarity=0.110 Sum_probs=58.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++.+++.++...+.....+ .++.++.+|+.+.. +.
T Consensus 29 ~k~vlITG-as~gIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~ 103 (262)
T 3rkr_A 29 GQVAVVTG-ASRGIGAAIARKLGSLG--ARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAA 103 (262)
T ss_dssp TCEEEESS-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHh
Confidence 45777666 46778999999887764 689999999998887777766554 45889999997642 00
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|...
T Consensus 104 ~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 104 HGRCDVLVNNAGV 116 (262)
T ss_dssp HSCCSEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 1468999988665
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.52 E-value=3.4 Score=34.59 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=55.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeC-CHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-----C---
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDC-KKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-----G--- 185 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDi-s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--- 185 (293)
.++++|=.| |+|.++..+++.+.+.| .+|+.+|. +++.++...+.....+ .++.++.+|+.+... .
T Consensus 28 ~~k~~lVTG-as~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (280)
T 4da9_A 28 ARPVAIVTG-GRRGIGLGIARALAASG--FDIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVV 102 (280)
T ss_dssp CCCEEEEET-TTSHHHHHHHHHHHHTT--CEEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHH
T ss_pred CCCEEEEec-CCCHHHHHHHHHHHHCC--CeEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 345677776 45678888888887764 69999995 7776666665555544 458999999987431 0
Q ss_pred --CCcccEEEecchh
Q 022698 186 --DNYFDVVVSAAFF 198 (293)
Q Consensus 186 --~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|...
T Consensus 103 ~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 103 AEFGRIDCLVNNAGI 117 (280)
T ss_dssp HHHSCCCEEEEECC-
T ss_pred HHcCCCCEEEECCCc
Confidence 1478999998765
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.55 Score=41.12 Aligned_cols=98 Identities=8% Similarity=-0.026 Sum_probs=58.4
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC
Q 022698 111 NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG 185 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 185 (293)
....++.+||-.|+ +|.++..+++..... +++|+++|.+++.++.+++. +.. ..+..+-.+.. ..
T Consensus 163 ~~~~~g~~VlV~Gg-~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~~~~~~~~~~~~~~~~~ 232 (353)
T 4dup_A 163 AGLTEGESVLIHGG-TSGIGTTAIQLARAF--GAEVYATAGSTGKCEACERL----GAK---RGINYRSEDFAAVIKAET 232 (353)
T ss_dssp TCCCTTCEEEESST-TSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHH
T ss_pred cCCCCCCEEEEEcC-CCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----CCC---EEEeCCchHHHHHHHHHh
Confidence 34667889998853 444444444443333 46999999999987776643 322 22222111110 01
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.+.+|+|+.+..- ..+....+.|+++|+++++.
T Consensus 233 ~~g~Dvvid~~g~-------------------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 233 GQGVDIILDMIGA-------------------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp SSCEEEEEESCCG-------------------GGHHHHHHTEEEEEEEEECC
T ss_pred CCCceEEEECCCH-------------------HHHHHHHHHhccCCEEEEEE
Confidence 3469999976331 13455678999999998854
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=91.49 E-value=2.1 Score=35.26 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=58.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----CC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----GD 186 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~~ 186 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.+|.+++.++.+.+.....+ .++.++.+|+.+.. + ..
T Consensus 7 ~k~vlVTGa-s~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 7 NATVAVIGA-GDYIGAEIAKKFAAEG--FTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH 81 (252)
T ss_dssp SCEEEEECC-SSHHHHHHHHHHHHTT--CEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence 456777775 4668888988887764 699999999988887777766654 45899999997632 0 01
Q ss_pred CcccEEEecchhh
Q 022698 187 NYFDVVVSAAFFH 199 (293)
Q Consensus 187 ~~fD~Iv~~~~~~ 199 (293)
++.|++|.|....
T Consensus 82 g~id~lv~nAg~~ 94 (252)
T 3h7a_A 82 APLEVTIFNVGAN 94 (252)
T ss_dssp SCEEEEEECCCCC
T ss_pred CCceEEEECCCcC
Confidence 5789999886653
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=0.37 Score=42.05 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=59.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-----CCCC
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-----PFGD 186 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~ 186 (293)
...++.+||-.|+|+ .++..+++.....+ +++|+++|.+++.++.+++. +.. .++...-.+. ....
T Consensus 167 ~~~~g~~vlV~Gagg-~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 237 (347)
T 1jvb_A 167 SLDPTKTLLVVGAGG-GLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRITE 237 (347)
T ss_dssp TCCTTCEEEEETTTS-HHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCc-cHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHh----CCC---EEecCCCccHHHHHHHHhc
Confidence 456788999999863 34444444433330 25899999999887766542 321 1221111111 0112
Q ss_pred -CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 187 -NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 187 -~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+.+|+|+.+..- ...++.+.+.|+++|+++.+..
T Consensus 238 ~~~~d~vi~~~g~------------------~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 238 SKGVDAVIDLNNS------------------EKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp TSCEEEEEESCCC------------------HHHHTTGGGGEEEEEEEEECCS
T ss_pred CCCceEEEECCCC------------------HHHHHHHHHHHhcCCEEEEECC
Confidence 479999976321 1345667789999999988654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.37 E-value=1.4 Score=35.45 Aligned_cols=108 Identities=16% Similarity=0.016 Sum_probs=64.3
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEEE
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVVV 193 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~Iv 193 (293)
+|+=+|+ |.++..+++.+.+.| .+|+++|.+++.++...+. .+ +.++.+|..+.. ..-..+|+|+
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g--~~v~vid~~~~~~~~l~~~---~~----~~~i~gd~~~~~~l~~a~i~~ad~vi 70 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRK--YGVVIINKDRELCEEFAKK---LK----ATIIHGDGSHKEILRDAEVSKNDVVV 70 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHHH---SS----SEEEESCTTSHHHHHHHTCCTTCEEE
T ss_pred EEEEECC--CHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHH---cC----CeEEEcCCCCHHHHHhcCcccCCEEE
Confidence 4555664 889999998887653 5999999999876654332 22 567888887632 1124689998
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCC
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKM 253 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf 253 (293)
+..+-. .....+....+.+.|...++. ....++..+.+++.|.
T Consensus 71 ~~~~~d---------------~~n~~~~~~a~~~~~~~~iia--~~~~~~~~~~l~~~G~ 113 (218)
T 3l4b_C 71 ILTPRD---------------EVNLFIAQLVMKDFGVKRVVS--LVNDPGNMEIFKKMGI 113 (218)
T ss_dssp ECCSCH---------------HHHHHHHHHHHHTSCCCEEEE--CCCSGGGHHHHHHHTC
T ss_pred EecCCc---------------HHHHHHHHHHHHHcCCCeEEE--EEeCcchHHHHHHCCC
Confidence 753321 223344455555666666554 1223334444444443
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.35 E-value=1.6 Score=36.86 Aligned_cols=111 Identities=17% Similarity=0.089 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++.+|=-|++ +.++..+++.+.+.| ++|+.+|.+++.++.+.+.. + .++..+.+|+.+.. +
T Consensus 28 ~gKvalVTGas-~GIG~aiA~~la~~G--a~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 28 NAKIAVITGAT-SGIGLAAAKRFVAEG--ARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcC-CHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHH
Confidence 35667777754 558888888888774 69999999999877665443 3 34778899987632 0
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHH-----------HHHHHHHHcccCCcEEEEEc
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERM-----------RVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~LkpgG~l~~~~ 237 (293)
.-++.|++|.|.......+-.... .+++. ...+.+.+.++.+|.++.+.
T Consensus 100 ~~G~iDiLVNNAG~~~~~~~~~~~----~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 100 EAGRIDVLFVNAGGGSMLPLGEVT----EEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp HHSCEEEEEECCCCCCCCCTTSCC----HHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCChhhcc----HHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 126799999886543322111111 11222 24566667888888877754
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=0.59 Score=41.27 Aligned_cols=98 Identities=14% Similarity=0.073 Sum_probs=58.7
Q ss_pred CCCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC--CCCC---
Q 022698 111 NDWSTVKTALDIGCGR-GILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV--RSLP--- 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~--~~~~--- 183 (293)
....++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++ .|.. .++..+- .++.
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~v 258 (376)
T 1e3i_A 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIA-----GASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVI 258 (376)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHHHH----hCCc---EEEccccccchHHHHH
Confidence 3466788999999753 44444444433 34 89999999987776643 3432 2221110 0110
Q ss_pred --CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC-cEEEEEcC
Q 022698 184 --FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG-GVGVVWDL 238 (293)
Q Consensus 184 --~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 238 (293)
...+.+|+|+-...- ...+..+.+.|+++ |+++++..
T Consensus 259 ~~~~~~g~Dvvid~~G~------------------~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 259 TELTAGGVDYSLDCAGT------------------AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp HHHHTSCBSEEEESSCC------------------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred HHHhCCCccEEEECCCC------------------HHHHHHHHHHhhcCCCEEEEECC
Confidence 112369999864221 23566778899999 99988654
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=91.34 E-value=2.7 Score=35.17 Aligned_cols=78 Identities=21% Similarity=0.144 Sum_probs=57.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC---------CC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF---------GD 186 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~ 186 (293)
++++|=.| |+|.++..+++.+.+.| ++|+.+|.+++.++.+.+.....+ .++.++.+|+.+... ..
T Consensus 33 gk~~lVTG-as~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 33 GRTALVTG-SSRGIGAAIAEGLAGAG--AHVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTT--CEEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 45677666 56788899999888764 699999999887777666665544 458899999987431 11
Q ss_pred CcccEEEecchh
Q 022698 187 NYFDVVVSAAFF 198 (293)
Q Consensus 187 ~~fD~Iv~~~~~ 198 (293)
++.|++|.|...
T Consensus 108 g~iD~lvnnAg~ 119 (275)
T 4imr_A 108 APVDILVINASA 119 (275)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 578999988664
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=91.34 E-value=3.3 Score=33.97 Aligned_cols=80 Identities=14% Similarity=0.001 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC--CCCC-----C---
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV--RSLP-----F--- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~--~~~~-----~--- 184 (293)
.++++|=.| |+|.++..+++.+.+.| .+|+.+|.+++.++...+.....+. .++.++..|+ .+.. .
T Consensus 11 ~~k~vlVTG-as~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (252)
T 3f1l_A 11 NDRIILVTG-ASDGIGREAAMTYARYG--ATVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRI 86 (252)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHH
Confidence 345777777 45778888988887764 6999999999888776665544321 2478889998 4321 0
Q ss_pred --CCCcccEEEecchh
Q 022698 185 --GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 --~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|...
T Consensus 87 ~~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 87 AVNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHHCSCCSEEEECCCC
T ss_pred HHhCCCCCEEEECCcc
Confidence 12478999988664
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=91.32 E-value=0.48 Score=41.03 Aligned_cols=97 Identities=13% Similarity=0.119 Sum_probs=58.2
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-------
Q 022698 111 NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------- 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 183 (293)
....++.+||-.|++ |.++..+++.+... +++|+++|.+++.++.+++ .+.. ..+ |..+..
T Consensus 141 ~~~~~g~~vlV~Ga~-ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~---~~~--d~~~~~~~~~i~~ 208 (333)
T 1wly_A 141 HKVKPGDYVLIHAAA-GGMGHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCH---HTI--NYSTQDFAEVVRE 208 (333)
T ss_dssp SCCCTTCEEEETTTT-STTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCS---EEE--ETTTSCHHHHHHH
T ss_pred hCCCCCCEEEEECCc-cHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCC---EEE--ECCCHHHHHHHHH
Confidence 346678899998852 23333333333333 3699999999987776654 2321 122 222211
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.....+|+|+.+..- ..++.+.+.|+++|+++.+..
T Consensus 209 ~~~~~~~d~vi~~~g~-------------------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 209 ITGGKGVDVVYDSIGK-------------------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp HHTTCCEEEEEECSCT-------------------TTHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCCeEEEECCcH-------------------HHHHHHHHhhccCCEEEEEec
Confidence 112369999976431 234667789999999988653
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.32 E-value=4 Score=34.01 Aligned_cols=118 Identities=16% Similarity=0.103 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC-HHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK-KRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F---- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis-~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 184 (293)
.++++|=.|+ +|.++..+++.+.+.| ++|+.++.+ ....+...+.....+ .++.++.+|+.+.. +
T Consensus 30 ~gk~~lVTGa-s~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 104 (271)
T 3v2g_A 30 AGKTAFVTGG-SRGIGAAIAKRLALEG--AAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETV 104 (271)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence 3567887775 5678888888887764 688888654 455555555555444 45889999997632 1
Q ss_pred -CCCcccEEEecchhhhhccccCcchhhhH-------HHHHHHHHHHHHcccCCcEEEEEc
Q 022698 185 -GDNYFDVVVSAAFFHTVGKEYGHRTVEAA-------AERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 -~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.-++.|++|.|..+....+-......... ..+..+.+.+.+.++++|.++.+.
T Consensus 105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 105 EALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 01478999998654322110000000000 112235666777888888887753
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=3.6 Score=34.08 Aligned_cols=81 Identities=12% Similarity=-0.090 Sum_probs=57.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.+|.+++.++.+.+.........++.++.+|+.+.. + .
T Consensus 8 ~k~~lVTGa-s~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 8 EAVAVVTGG-SSGIGLATVELLLEAG--AAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp TCEEEEETC-SSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 456777775 5668888888887764 6899999999888777666654221234889999997632 0 0
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|..+.
T Consensus 85 ~g~id~lvnnAg~~ 98 (265)
T 3lf2_A 85 LGCASILVNNAGQG 98 (265)
T ss_dssp HCSCSEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 14789999986653
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.19 E-value=0.19 Score=44.57 Aligned_cols=102 Identities=16% Similarity=0.083 Sum_probs=58.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
+.+|+=+|+ |.++..+++.+... +++|+++|.++..++.+.+.. +. .+.....+..++.-.-..+|+|+.+
T Consensus 166 ~~~V~ViGa--G~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l~~~~~~~DvVi~~ 236 (369)
T 2eez_A 166 PASVVILGG--GTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEANIKKSVQHADLLIGA 236 (369)
T ss_dssp CCEEEEECC--SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCEEEEECC--CHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHHHHHHhCCCEEEEC
Confidence 478999998 67888887776655 369999999998776654322 21 1222222211111001358999987
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.+..... .+..+.++..+.+++||.++.+..
T Consensus 237 ~g~~~~~------------~~~li~~~~l~~mk~gg~iV~v~~ 267 (369)
T 2eez_A 237 VLVPGAK------------APKLVTRDMLSLMKEGAVIVDVAV 267 (369)
T ss_dssp CC-------------------CCSCHHHHTTSCTTCEEEECC-
T ss_pred CCCCccc------------cchhHHHHHHHhhcCCCEEEEEec
Confidence 5532211 111224556678899998877553
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.14 E-value=3.1 Score=34.63 Aligned_cols=79 Identities=18% Similarity=0.096 Sum_probs=57.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++.+++.++...+.....+ .++.++.+|+.+.. . .
T Consensus 4 ~k~~lVTG-as~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 78 (264)
T 3tfo_A 4 DKVILITG-ASGGIGEGIARELGVAG--AKILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDT 78 (264)
T ss_dssp TCEEEESS-TTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 34666666 45778888988887764 699999999998887777666554 45888899987632 0 0
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|..+.
T Consensus 79 ~g~iD~lVnnAG~~ 92 (264)
T 3tfo_A 79 WGRIDVLVNNAGVM 92 (264)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 14789999886543
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=91.11 E-value=3.9 Score=34.39 Aligned_cols=78 Identities=23% Similarity=0.144 Sum_probs=55.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-GVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.| |+|.++..+++.+.+.| .+|++++.++..++...+..... + .++.++.+|+.+.. +
T Consensus 26 ~k~vlITG-asggiG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (302)
T 1w6u_A 26 GKVAFITG-GGTGLGKGMTTLLSSLG--AQCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELIK 100 (302)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHhcC--CceEEEEeCCCCHHHHHHHHHHHHH
Confidence 45677776 56888999999887764 69999999988776555544332 3 34889999987632 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-+++|+||.+...
T Consensus 101 ~~g~id~li~~Ag~ 114 (302)
T 1w6u_A 101 VAGHPNIVINNAAG 114 (302)
T ss_dssp HTCSCSEEEECCCC
T ss_pred HcCCCCEEEECCCC
Confidence 12467999988654
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.10 E-value=2.4 Score=35.20 Aligned_cols=79 Identities=19% Similarity=0.159 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=.|++ |.++..+++.+.+.| .+|+.+|.+++.++...+.....+ .++.++.+|+.+.. +
T Consensus 10 ~~k~vlVTGas-~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 10 TDKVVVISGVG-PALGTTLARRCAEQG--ADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp TTCEEEEESCC-TTHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCC-cHHHHHHHHHHHHCc--CEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35678877765 557888888887764 699999999998887777766654 45889999998642 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|...
T Consensus 85 ~~g~id~lv~nAg~ 98 (264)
T 3ucx_A 85 AYGRVDVVINNAFR 98 (264)
T ss_dssp HTSCCSEEEECCCS
T ss_pred HcCCCcEEEECCCC
Confidence 12478999988643
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=90.92 E-value=2.4 Score=37.90 Aligned_cols=50 Identities=10% Similarity=0.055 Sum_probs=36.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcC-CCcEEEEEeCCHHHHHHHHHHHHh
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTG-SLGRVVGLDCKKRTTLSTLRTAKM 165 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~-~~~~v~~vDis~~~l~~a~~~~~~ 165 (293)
..+|+|+.||.|.....+.+.-.... .-..|.++|+++.+.+.-+.|...
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 35899999999999988876431100 001288899999999888877653
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=90.88 E-value=4.5 Score=33.57 Aligned_cols=117 Identities=25% Similarity=0.221 Sum_probs=70.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeC-CHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDC-KKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDi-s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++. ++...+...+.....+ .++.++.+|+.+.. +.
T Consensus 18 ~k~~lVTG-as~gIG~aia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 18 GKVALVTG-SGRGIGAAVAVHLGRLG--AKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp TCEEEESC-TTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45677666 55778888988887764 68888775 4555555555555544 45889999998742 00
Q ss_pred -CCcccEEEecchhhhhccccCcchhhhH-------HHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 -DNYFDVVVSAAFFHTVGKEYGHRTVEAA-------AERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-++.|++|.|.......+-......... .....+.+.+.+.++++|.++++.
T Consensus 93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 152 (270)
T 3is3_A 93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS 152 (270)
T ss_dssp HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 1468999988665322210000000000 012235566777888889888754
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=90.76 E-value=2.1 Score=36.77 Aligned_cols=94 Identities=15% Similarity=0.238 Sum_probs=58.9
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
.+|.=||+ |.++..++..+.+.|...+|+++|.+++.++.+.+ .|... . ...|..+. .-...|+|+..-
T Consensus 34 ~kI~IIG~--G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~--~-~~~~~~~~--~~~~aDvVilav 102 (314)
T 3ggo_A 34 QNVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID--E-GTTSIAKV--EDFSPDFVMLSS 102 (314)
T ss_dssp SEEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS--E-EESCTTGG--GGGCCSEEEECS
T ss_pred CEEEEEee--CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc--h-hcCCHHHH--hhccCCEEEEeC
Confidence 57888885 66777777777665432389999999987665542 34311 1 22333320 123479999765
Q ss_pred hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+... ...+++++...++||.+++-+
T Consensus 103 p~~~---------------~~~vl~~l~~~l~~~~iv~d~ 127 (314)
T 3ggo_A 103 PVRT---------------FREIAKKLSYILSEDATVTDQ 127 (314)
T ss_dssp CGGG---------------HHHHHHHHHHHSCTTCEEEEC
T ss_pred CHHH---------------HHHHHHHHhhccCCCcEEEEC
Confidence 4332 345778888889998766543
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=90.74 E-value=3.4 Score=34.45 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=57.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| ++|+.++.++..++...+.....+. ++.++.+|+.+.. + .
T Consensus 28 ~k~~lVTG-as~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (270)
T 3ftp_A 28 KQVAIVTG-ASRGIGRAIALELARRG--AMVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTLKE 102 (270)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 45666555 67788999998887764 6999999999888877766665543 3788899987632 1 0
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|..+.
T Consensus 103 ~g~iD~lvnnAg~~ 116 (270)
T 3ftp_A 103 FGALNVLVNNAGIT 116 (270)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 14789999986543
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=90.70 E-value=2 Score=36.09 Aligned_cols=80 Identities=18% Similarity=0.064 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
.++++|=.|+ +|.++..+++.+.+.| ++|+.++.+++.++...+.....+ .++.++.+|+.+.. +.
T Consensus 31 ~gk~~lVTGa-s~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~ 105 (276)
T 3r1i_A 31 SGKRALITGA-STGIGKKVALAYAEAG--AQVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTG 105 (276)
T ss_dssp TTCEEEEEST-TSHHHHHHHHHHHHTT--CEEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3567777775 5778888988887764 699999999988877776666554 34888999998642 10
Q ss_pred -CCcccEEEecchhh
Q 022698 186 -DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 106 ~~g~iD~lvnnAg~~ 120 (276)
T 3r1i_A 106 ELGGIDIAVCNAGIV 120 (276)
T ss_dssp HHSCCSEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 14799999986653
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.46 Score=41.66 Aligned_cols=99 Identities=8% Similarity=-0.064 Sum_probs=59.1
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------C
Q 022698 111 NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------F 184 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------~ 184 (293)
....++.+||-.|+ +|.++..+++.+... +++|+++|.+++.++.+++. +.. ..+..+-.+.. .
T Consensus 158 ~~~~~g~~vlV~Ga-~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~ 227 (354)
T 2j8z_A 158 GNVQAGDYVLIHAG-LSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEKL----GAA---AGFNYKKEDFSEATLKFT 227 (354)
T ss_dssp SCCCTTCEEEESST-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHT
T ss_pred cCCCCCCEEEEECC-ccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----CCc---EEEecCChHHHHHHHHHh
Confidence 34567889998874 344555555544443 46999999999877776432 321 12211111110 1
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
....+|+|+.+..-. .+....+.|+++|+++++..
T Consensus 228 ~~~~~d~vi~~~G~~-------------------~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 228 KGAGVNLILDCIGGS-------------------YWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp TTSCEEEEEESSCGG-------------------GHHHHHHHEEEEEEEEECCC
T ss_pred cCCCceEEEECCCch-------------------HHHHHHHhccCCCEEEEEec
Confidence 124699999764321 24556788999999988654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=90.61 E-value=5.2 Score=32.19 Aligned_cols=78 Identities=19% Similarity=0.022 Sum_probs=56.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH-hcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK-MEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~-~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
+++|=.| |+|.++..+++.+.+.| .+|+.++.+++.++...+... ..+ .++.++.+|+.+.. +.
T Consensus 3 k~vlITG-as~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (235)
T 3l77_A 3 KVAVITG-ASRGIGEAIARALARDG--YALALGARSVDRLEKIAHELMQEQG--VEVFYHHLDVSKAESVEEFSKKVLER 77 (235)
T ss_dssp CEEEEES-CSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHCC-HHHH
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhhcC--CeEEEEEeccCCHHHHHHHHHHHHHh
Confidence 4667666 56778899999888764 689999999987776665554 333 35889999997632 11
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|..+.
T Consensus 78 ~g~id~li~~Ag~~ 91 (235)
T 3l77_A 78 FGDVDVVVANAGLG 91 (235)
T ss_dssp HSSCSEEEECCCCC
T ss_pred cCCCCEEEECCccc
Confidence 14789999986654
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.41 E-value=1.4 Score=38.27 Aligned_cols=96 Identities=15% Similarity=0.010 Sum_probs=58.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC------
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG------ 185 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------ 185 (293)
...++.+||-+|+|. ++..+++..... +++|+++|.++..++.+++ .+.. .+ .|..+..+.
T Consensus 161 ~~~~g~~VlV~GaG~--vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~~--~d~~~~~~~~~~~~~ 227 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGG--LGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGAD---LV--VNPLKEDAAKFMKEK 227 (339)
T ss_dssp TCCTTCEEEEECCST--THHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCS---EE--ECTTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCH--HHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCC---EE--ecCCCccHHHHHHHH
Confidence 356788999999843 444444433333 3699999999987776653 3432 12 232221110
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.+.+|+|+.+... ...++.+.+.|+++|+++.+..
T Consensus 228 ~~~~d~vid~~g~------------------~~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 228 VGGVHAAVVTAVS------------------KPAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp HSSEEEEEESSCC------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred hCCCCEEEECCCC------------------HHHHHHHHHHhhcCCEEEEecc
Confidence 0468999865321 1345667789999999987543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=0.81 Score=39.87 Aligned_cols=97 Identities=15% Similarity=0.048 Sum_probs=58.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F- 184 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~- 184 (293)
.. ++.+||-+|+ |.++..+++..... ++ +|+++|.+++.++.+++. |.. .++..+-.++. .
T Consensus 165 ~~-~g~~VlV~Ga--G~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~v~~~~ 232 (348)
T 2d8a_A 165 PI-SGKSVLITGA--GPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKKV----GAD---YVINPFEEDVVKEVMDIT 232 (348)
T ss_dssp CC-TTCCEEEECC--SHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHT
T ss_pred CC-CCCEEEEECC--CHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh----CCC---EEECCCCcCHHHHHHHHc
Confidence 45 7889999998 44554444443333 35 899999999877766542 321 22221111110 1
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
....+|+|+.+... ...++.+.+.|+++|+++.+..
T Consensus 233 ~g~g~D~vid~~g~------------------~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 233 DGNGVDVFLEFSGA------------------PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp TTSCEEEEEECSCC------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCCCCCEEEECCCC------------------HHHHHHHHHHHhcCCEEEEEcc
Confidence 12369999975321 1345667789999999988653
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.35 E-value=1.8 Score=37.39 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=57.7
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------C
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------F 184 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------~ 184 (293)
...++.+||=.|+|. |..+..+++.. | ...++++|.+++.++.+++ .|.. .++..+-.+.+ .
T Consensus 157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~---G-~~~vi~~~~~~~k~~~a~~----lGa~---~~i~~~~~~~~~~~~~~~ 225 (346)
T 4a2c_A 157 QGCENKNVIIIGAGTIGLLAIQCAVAL---G-AKSVTAIDISSEKLALAKS----FGAM---QTFNSSEMSAPQMQSVLR 225 (346)
T ss_dssp TCCTTSEEEEECCSHHHHHHHHHHHHT---T-CSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHG
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHc---C-CcEEEEEechHHHHHHHHH----cCCe---EEEeCCCCCHHHHHHhhc
Confidence 356788999998865 33333344333 2 3478899999987766654 4532 22222211111 1
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
....+|+|+.... -...++...++|++||.++++...
T Consensus 226 ~~~g~d~v~d~~G------------------~~~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 226 ELRFNQLILETAG------------------VPQTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp GGCSSEEEEECSC------------------SHHHHHHHHHHCCTTCEEEECCCC
T ss_pred ccCCccccccccc------------------ccchhhhhhheecCCeEEEEEecc
Confidence 1244788775421 124556677899999999986543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.33 E-value=6.8 Score=32.82 Aligned_cols=80 Identities=19% Similarity=0.088 Sum_probs=58.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C----C------
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P----F------ 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~----~------ 184 (293)
++++|=.| |+|.++..+++.+.+.| .+|++++.++...+.+.+.....+. .++.++.+|+.+. . +
T Consensus 12 ~k~vlITG-as~GIG~~~a~~L~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 12 RRCAVVTG-GNKGIGFEICKQLSSNG--IMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp CCEEEESS-CSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEec-CCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHH
Confidence 45677666 45778999999887764 6999999999887777666655432 4589999999875 2 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
..++.|++|.|....
T Consensus 88 ~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 88 HFGKLDILVNNAGVA 102 (311)
T ss_dssp HHSSCCEEEECCCCC
T ss_pred hCCCCCEEEECCccc
Confidence 014799999986643
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=90.20 E-value=5 Score=33.21 Aligned_cols=79 Identities=22% Similarity=0.076 Sum_probs=56.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEEcCCCCCCC-----C----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-EGVQEYVTAREGDVRSLPF-----G---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~-~~~~~~v~~~~~d~~~~~~-----~---- 185 (293)
++++|=.| |+|.++..+++.+.+.| ++|+.++.+++.++.+.+.... .+ .++.++.+|+.+... .
T Consensus 20 ~k~vlVTG-as~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 94 (266)
T 4egf_A 20 GKRALITG-ATKGIGADIARAFAAAG--ARLVLSGRDVSELDAARRALGEQFG--TDVHTVAIDLAEPDAPAELARRAAE 94 (266)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 45676665 46778889998887764 6999999999888776665544 33 358999999987531 0
Q ss_pred -CCcccEEEecchhh
Q 022698 186 -DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 95 ~~g~id~lv~nAg~~ 109 (266)
T 4egf_A 95 AFGGLDVLVNNAGIS 109 (266)
T ss_dssp HHTSCSEEEEECCCC
T ss_pred HcCCCCEEEECCCcC
Confidence 14789999886543
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=90.05 E-value=4 Score=33.68 Aligned_cols=80 Identities=25% Similarity=0.116 Sum_probs=56.7
Q ss_pred CCeEEEEcC-CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGC-GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~-G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.|+ |+ .++..+++.+.+.| .+|+.+|.++..++...+.....+ ..++.++.+|+.+.. +
T Consensus 22 ~k~vlITGasg~-GIG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 22 GKVVLVTAAAGT-GIGSTTARRALLEG--ADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp TCEEEESSCSSS-SHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCC-chHHHHHHHHHHCC--CEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 557777776 33 47778888877664 699999999988877776665443 246899999998632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|..+.
T Consensus 98 ~~g~id~li~~Ag~~ 112 (266)
T 3o38_A 98 KAGRLDVLVNNAGLG 112 (266)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HhCCCcEEEECCCcC
Confidence 014689999986643
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=0.33 Score=41.89 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=55.8
Q ss_pred eEEEEcC--CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-CCCCCcccEEEe
Q 022698 118 TALDIGC--GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-PFGDNYFDVVVS 194 (293)
Q Consensus 118 ~vLDiG~--G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iv~ 194 (293)
+||=.|+ |.|..+..+++.. +++|++++.|++.++.+++ .|... + +-..+.... ....+.+|+|+-
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-----Ga~Vi~~~~~~~~~~~~~~----lGa~~-v-i~~~~~~~~~~~~~~~~d~v~d 217 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-----GYQVAAVSGRESTHGYLKS----LGANR-I-LSRDEFAESRPLEKQLWAGAID 217 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-----TCCEEEEESCGGGHHHHHH----HTCSE-E-EEGGGSSCCCSSCCCCEEEEEE
T ss_pred eEEEECCCcHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHh----cCCCE-E-EecCCHHHHHhhcCCCccEEEE
Confidence 4888886 2355555555543 4699999999997777765 34321 1 111121111 122457999885
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+. . . ..+..+.+.|+++|+++.+..
T Consensus 218 ~~-----g------------~--~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 218 TV-----G------------D--KVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp SS-----C------------H--HHHHHHHHTEEEEEEEEECCC
T ss_pred CC-----C------------c--HHHHHHHHHHhcCCEEEEEec
Confidence 42 1 2 267778899999999998654
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=89.94 E-value=9.1 Score=33.21 Aligned_cols=130 Identities=9% Similarity=0.089 Sum_probs=80.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC----------------------CCCce
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG----------------------VQEYV 172 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~----------------------~~~~v 172 (293)
+...|+-+|||.=.....+.... .++.+++=+|. |+.++.=++.+...+ ..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~---~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y 165 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDED---LLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRY 165 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTT---CCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSE
T ss_pred CCCEEEEeCCCcCchHHHhcCCC---CCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCce
Confidence 45689999999988776554321 01357777777 555543333333210 13568
Q ss_pred EEEEcCCCCCC----------CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---
Q 022698 173 TAREGDVRSLP----------FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--- 239 (293)
Q Consensus 173 ~~~~~d~~~~~----------~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--- 239 (293)
.++.+|+.+.. +.....-++++-.++.+++ .+....+++.+.+... +|.+++++..
T Consensus 166 ~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~----------~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~ 234 (334)
T 3iei_A 166 AVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMT----------PEQSANLLKWAANSFE-RAMFINYEQVNMG 234 (334)
T ss_dssp EEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSC----------HHHHHHHHHHHHHHCS-SEEEEEEEECCTT
T ss_pred EEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCC----------HHHHHHHHHHHHHhCC-CceEEEEeccCCC
Confidence 89999987631 2234456777777777777 4477788888887664 5555554421
Q ss_pred -------------------------CchHHHHHHHHcCCcceEEe
Q 022698 240 -------------------------HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 240 -------------------------~~~~~~~~l~~~gf~~~~~~ 259 (293)
..++..+.+.+.||+.++..
T Consensus 235 d~fg~~M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~ 279 (334)
T 3iei_A 235 DRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAV 279 (334)
T ss_dssp SHHHHHHHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceee
Confidence 12456777788888876654
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=89.76 E-value=0.33 Score=42.67 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=56.5
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC-CC--CCCCC
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR-SL--PFGDN 187 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~-~~--~~~~~ 187 (293)
...++.+||-+|+|. |..+..+++.. +++|+++|.|++.++.+++ .|.. .++..+-. +. ... +
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~-----Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~~-~ 242 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAM-----GAETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKYF-D 242 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHH-----TCEEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHSC-S
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEcCCHHHHHHHHH----cCCC---EEEcCcCchHHHHHhh-c
Confidence 456788999999843 44444444433 3589999999987777654 3432 22222111 11 011 4
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.+|+|+....... ...++.+.+.|++||+++.+.
T Consensus 243 ~~D~vid~~g~~~----------------~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 243 TFDLIVVCASSLT----------------DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp CEEEEEECCSCST----------------TCCTTTGGGGEEEEEEEEECC
T ss_pred CCCEEEECCCCCc----------------HHHHHHHHHHhcCCCEEEEec
Confidence 6999996533200 012234567899999988754
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=89.68 E-value=4.2 Score=36.19 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHH---HHHHHHHHHHhcC-------CCCceEEEEcCCCCCC-
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR---TTLSTLRTAKMEG-------VQEYVTAREGDVRSLP- 183 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~---~l~~a~~~~~~~~-------~~~~v~~~~~d~~~~~- 183 (293)
+..+||=.| |+|.++..+++.+.+. +.+|++++.++. +.+...+.+.... ...++.++.+|+.+.+
T Consensus 68 ~~~~vlVTG-atG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 144 (427)
T 4f6c_A 68 PLGNTLLTG-ATGFLGAYLIEALQGY--SHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD 144 (427)
T ss_dssp CCEEEEEEC-TTSHHHHHHHHHHTTT--EEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred CCCEEEEec-CCcHHHHHHHHHHHcC--CCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence 345787776 5799999999988544 579999998876 4444443332210 0145899999997632
Q ss_pred C-CCCcccEEEecchhh
Q 022698 184 F-GDNYFDVVVSAAFFH 199 (293)
Q Consensus 184 ~-~~~~fD~Iv~~~~~~ 199 (293)
+ ....+|+|+.+....
T Consensus 145 l~~~~~~d~Vih~A~~~ 161 (427)
T 4f6c_A 145 VVLPENMDTIIHAGART 161 (427)
T ss_dssp CCCSSCCSEEEECCCCC
T ss_pred CCCcCCCCEEEECCccc
Confidence 1 235799999875543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=89.42 E-value=4 Score=33.59 Aligned_cols=79 Identities=22% Similarity=0.132 Sum_probs=57.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+|.+++.++...+.....+ .++.++.+|+.+.. +.
T Consensus 12 ~k~vlVTG-as~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 12 DAVAIVTG-AAAGIGRAIAGTFAKAG--ASVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp TCEEEECS-CSSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45677666 56678888888887764 699999999988887776666554 45889999998642 10
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 87 ~g~id~lv~nAg~~ 100 (256)
T 3gaf_A 87 FGKITVLVNNAGGG 100 (256)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 14789999986653
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=89.35 E-value=1.5 Score=38.24 Aligned_cols=97 Identities=12% Similarity=0.028 Sum_probs=59.3
Q ss_pred CCCCCC--CeEEEEcCCCChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----
Q 022698 111 NDWSTV--KTALDIGCGRGILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---- 183 (293)
Q Consensus 111 ~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 183 (293)
....++ .+||-.|++ |.++..+++..... ++ +|+++|.+++.++.+++. .+.. ..+ |..+..
T Consensus 154 ~~~~~g~~~~vlI~Gas-ggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~~---~g~~---~~~--d~~~~~~~~~ 222 (357)
T 2zb4_A 154 GHITAGSNKTMVVSGAA-GACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTSE---LGFD---AAI--NYKKDNVAEQ 222 (357)
T ss_dssp SCCCTTSCCEEEESSTT-BHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT---SCCS---EEE--ETTTSCHHHH
T ss_pred cCCCCCCccEEEEECCC-cHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHH---cCCc---eEE--ecCchHHHHH
Confidence 345677 899999873 44555555444433 46 999999998866655432 2321 122 222211
Q ss_pred ---CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 ---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 ---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
...+.+|+|+.+.. . ..++.+.+.|+++|+++++.
T Consensus 223 ~~~~~~~~~d~vi~~~G-----------------~--~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 223 LRESCPAGVDVYFDNVG-----------------G--NISDTVISQMNENSHIILCG 260 (357)
T ss_dssp HHHHCTTCEEEEEESCC-----------------H--HHHHHHHHTEEEEEEEEECC
T ss_pred HHHhcCCCCCEEEECCC-----------------H--HHHHHHHHHhccCcEEEEEC
Confidence 11226999997633 1 34567788999999998864
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.29 E-value=5.2 Score=33.47 Aligned_cols=76 Identities=21% Similarity=0.078 Sum_probs=53.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+|.+++.++...+.. + .++.++.+|+.+.. . .
T Consensus 29 gk~vlVTG-as~gIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (277)
T 3gvc_A 29 GKVAIVTG-AGAGIGLAVARRLADEG--CHVLCADIDGDAADAAATKI---G--CGAAACRVDVSDEQQIIAMVDACVAA 100 (277)
T ss_dssp TCEEEETT-TTSTHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHH---C--SSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHc---C--CcceEEEecCCCHHHHHHHHHHHHHH
Confidence 45677666 45678888888887764 69999999988776555443 2 34788999998642 0 0
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 101 ~g~iD~lvnnAg~~ 114 (277)
T 3gvc_A 101 FGGVDKLVANAGVV 114 (277)
T ss_dssp HSSCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 14789999986654
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=89.26 E-value=0.27 Score=43.39 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=58.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
+.+|+=+|+ |..+..+++.+...| ++|+++|.+++.++.+.+.... .+.....+..++...-..+|+|+..
T Consensus 167 ~~~VlViGa--GgvG~~aa~~a~~~G--a~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~DvVI~~ 237 (361)
T 1pjc_A 167 PGKVVILGG--GVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGA 237 (361)
T ss_dssp CCEEEEECC--SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHHcCCCEEEEC
Confidence 378999998 667766666655543 5999999999887777654322 1222222211111001258999876
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.+....+ .+..+.+...+.++|||.++.+..
T Consensus 238 ~~~~~~~------------~~~li~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 238 VLVPGRR------------APILVPASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp CCCTTSS------------CCCCBCHHHHTTSCTTCEEEETTC
T ss_pred CCcCCCC------------CCeecCHHHHhhCCCCCEEEEEec
Confidence 4432211 000112334567899998887544
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=89.21 E-value=0.74 Score=34.95 Aligned_cols=113 Identities=17% Similarity=0.083 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYF 189 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~f 189 (293)
.++.+|+=+|+ |.++..+++.+...| .+|+++|.+++.++.++. ..+ ..++..|..+.. ..-..+
T Consensus 17 ~~~~~v~IiG~--G~iG~~la~~L~~~g--~~V~vid~~~~~~~~~~~---~~g----~~~~~~d~~~~~~l~~~~~~~a 85 (155)
T 2g1u_A 17 QKSKYIVIFGC--GRLGSLIANLASSSG--HSVVVVDKNEYAFHRLNS---EFS----GFTVVGDAAEFETLKECGMEKA 85 (155)
T ss_dssp CCCCEEEEECC--SHHHHHHHHHHHHTT--CEEEEEESCGGGGGGSCT---TCC----SEEEESCTTSHHHHHTTTGGGC
T ss_pred cCCCcEEEECC--CHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHh---cCC----CcEEEecCCCHHHHHHcCcccC
Confidence 45678998886 778888888876654 599999999874432210 112 345566654311 112358
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCc
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKME 254 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~ 254 (293)
|+|+...+-. .....+..+.+.+.+...++... ..+...+.+++.|..
T Consensus 86 d~Vi~~~~~~---------------~~~~~~~~~~~~~~~~~~iv~~~--~~~~~~~~l~~~G~~ 133 (155)
T 2g1u_A 86 DMVFAFTNDD---------------STNFFISMNARYMFNVENVIARV--YDPEKIKIFEENGIK 133 (155)
T ss_dssp SEEEECSSCH---------------HHHHHHHHHHHHTSCCSEEEEEC--SSGGGHHHHHTTTCE
T ss_pred CEEEEEeCCc---------------HHHHHHHHHHHHHCCCCeEEEEE--CCHHHHHHHHHCCCc
Confidence 9998764321 22233334444455555554432 344455677777765
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=1.2 Score=38.60 Aligned_cols=99 Identities=15% Similarity=0.074 Sum_probs=55.5
Q ss_pred CCCCCeEEEEcCCCCh-HHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-C-C-CCCCc
Q 022698 113 WSTVKTALDIGCGRGI-LLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-L-P-FGDNY 188 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~-~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~-~-~~~~~ 188 (293)
..++.+||=+|+|.+. .+..+++... +.+|+++|.+++.++.+++ .+...-+.....|..+ . . .....
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~----g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t~g~g 232 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVF----GAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKITGGLG 232 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTS----CCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHTTSSC
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhC----CCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhcCCCC
Confidence 5678899999987643 3333333322 5799999999986665543 3432111111112111 0 0 11234
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+|.++.... -...+....+.|+++|.++++.
T Consensus 233 ~d~~~~~~~------------------~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 233 VQSAIVCAV------------------ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEEEEECCS------------------CHHHHHHHHHTEEEEEEEEECC
T ss_pred ceEEEEecc------------------CcchhheeheeecCCceEEEEe
Confidence 666664321 1245667778999999988744
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=89.14 E-value=5.5 Score=32.76 Aligned_cols=78 Identities=22% Similarity=0.165 Sum_probs=56.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+|.+++.++.+.+.....+ .++.++.+|+.+.. +.
T Consensus 6 ~k~vlVTG-as~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (257)
T 3imf_A 6 EKVVIITG-GSSGMGKGMATRFAKEG--ARVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEK 80 (257)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45676666 56778999999887764 699999999998877766655443 45889999998632 00
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|...
T Consensus 81 ~g~id~lv~nAg~ 93 (257)
T 3imf_A 81 FGRIDILINNAAG 93 (257)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1468999988654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=89.12 E-value=3.3 Score=37.18 Aligned_cols=110 Identities=17% Similarity=0.098 Sum_probs=70.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVV 192 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~I 192 (293)
.+|+=+|+ |.++..+++.+... +..|+++|.+++.++.+++ .+ +.++.+|..+.. ..-...|+|
T Consensus 5 ~~viIiG~--Gr~G~~va~~L~~~--g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~agi~~A~~v 72 (413)
T 3l9w_A 5 MRVIIAGF--GRFGQITGRLLLSS--GVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVL 72 (413)
T ss_dssp CSEEEECC--SHHHHHHHHHHHHT--TCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHTTTTTCSEE
T ss_pred CeEEEECC--CHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhcCCCccCEE
Confidence 46777776 77888888888765 3699999999998876653 23 457889987632 123468988
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMED 255 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~ 255 (293)
++...- +.....+-...+.+.|+..++.-. ..++....|.+.|-..
T Consensus 73 iv~~~~---------------~~~n~~i~~~ar~~~p~~~Iiara--~~~~~~~~L~~~Gad~ 118 (413)
T 3l9w_A 73 INAIDD---------------PQTNLQLTEMVKEHFPHLQIIARA--RDVDHYIRLRQAGVEK 118 (413)
T ss_dssp EECCSS---------------HHHHHHHHHHHHHHCTTCEEEEEE--SSHHHHHHHHHTTCSS
T ss_pred EECCCC---------------hHHHHHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHCCCCE
Confidence 875321 123344555667788887766632 1344555555555443
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=89.03 E-value=4.4 Score=33.78 Aligned_cols=79 Identities=24% Similarity=0.178 Sum_probs=58.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+|.++..++...+.....+ .++.++.+|+.+.. + .
T Consensus 26 gk~~lVTG-as~gIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (271)
T 4ibo_A 26 GRTALVTG-SSRGLGRAMAEGLAVAG--ARILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQ 100 (271)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTT--CEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45676666 66788999999888764 699999999988887776666554 34889999987632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
.++.|++|.|....
T Consensus 101 ~g~iD~lv~nAg~~ 114 (271)
T 4ibo_A 101 GIDVDILVNNAGIQ 114 (271)
T ss_dssp TCCCCEEEECCCCC
T ss_pred CCCCCEEEECCCCC
Confidence 24689999986643
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=88.99 E-value=3 Score=36.12 Aligned_cols=93 Identities=23% Similarity=0.149 Sum_probs=55.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CCCCcc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FGDNYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~f 189 (293)
++.+||=.| |+|.++..+++..... +++|+++|.+++.++.+++. |.. .++..+ .++. ...+.+
T Consensus 150 ~g~~VlV~g-g~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~-~~~~~~~~~~~~~g~ 218 (346)
T 3fbg_A 150 EGKTLLIIN-GAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKKM----GAD---IVLNHK-ESLLNQFKTQGIELV 218 (346)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHHH----TCS---EEECTT-SCHHHHHHHHTCCCE
T ss_pred CCCEEEEEc-CCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----CCc---EEEECC-ccHHHHHHHhCCCCc
Confidence 678899885 2344444444433333 46999999999877777653 322 222111 1110 123469
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|+|+.+.. ....+..+.++|+++|+++.+
T Consensus 219 Dvv~d~~g------------------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 219 DYVFCTFN------------------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EEEEESSC------------------HHHHHHHHHHHEEEEEEEEES
T ss_pred cEEEECCC------------------chHHHHHHHHHhccCCEEEEE
Confidence 99996422 124556778899999999764
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=88.97 E-value=6.6 Score=33.14 Aligned_cols=80 Identities=19% Similarity=0.188 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC------------HHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK------------KRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis------------~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
.++++|=.|+ +|.++..+++.+.+. +++|+++|.+ ++.++...+.....+ .++.++.+|+.+.
T Consensus 27 ~gk~~lVTGa-s~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~ 101 (299)
T 3t7c_A 27 EGKVAFITGA-ARGQGRSHAITLARE--GADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDF 101 (299)
T ss_dssp TTCEEEEEST-TSHHHHHHHHHHHHT--TCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCH
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHC--CCEEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCH
Confidence 3557777775 456888888888776 4699999987 666666655555544 4589999999863
Q ss_pred C-----C-----CCCcccEEEecchhh
Q 022698 183 P-----F-----GDNYFDVVVSAAFFH 199 (293)
Q Consensus 183 ~-----~-----~~~~fD~Iv~~~~~~ 199 (293)
. + .-++.|++|.|..+.
T Consensus 102 ~~v~~~~~~~~~~~g~iD~lv~nAg~~ 128 (299)
T 3t7c_A 102 DAMQAAVDDGVTQLGRLDIVLANAALA 128 (299)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 2 1 115799999886643
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.96 E-value=7.3 Score=32.38 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC------------HHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK------------KRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis------------~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
++++|=.|+ +|.++..+++.+.+.| ++|+.+|.+ .+.++...+.....+ .++.++.+|+.+..
T Consensus 10 ~k~~lVTGa-s~gIG~a~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~ 84 (281)
T 3s55_A 10 GKTALITGG-ARGMGRSHAVALAEAG--ADIAICDRCENSDVVGYPLATADDLAETVALVEKTG--RRCISAKVDVKDRA 84 (281)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCC--CeEEEEeCCccccccccccccHHHHHHHHHHHHhcC--CeEEEEeCCCCCHH
Confidence 467887775 5678888988887764 689999986 555555555555444 45889999997632
Q ss_pred -----CC-----CCcccEEEecchhh
Q 022698 184 -----FG-----DNYFDVVVSAAFFH 199 (293)
Q Consensus 184 -----~~-----~~~fD~Iv~~~~~~ 199 (293)
+. -++.|++|.|..+.
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~ 110 (281)
T 3s55_A 85 ALESFVAEAEDTLGGIDIAITNAGIS 110 (281)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECCCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 10 14799999986654
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=88.95 E-value=1.8 Score=36.01 Aligned_cols=76 Identities=18% Similarity=0.066 Sum_probs=52.2
Q ss_pred CCeEEEEcC-CCChHHHHHHHHhhhcCCCcEEEEEeCCHHH-HHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC---
Q 022698 116 VKTALDIGC-GRGILLNAVATQFKKTGSLGRVVGLDCKKRT-TLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG--- 185 (293)
Q Consensus 116 ~~~vLDiG~-G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~-l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~--- 185 (293)
++++|=.|+ |+|.++..+++.+.+.| .+|+.++.++.. ++... +.. ..++.++.+|+.+.. +.
T Consensus 7 ~k~vlVTGa~~s~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (269)
T 2h7i_A 7 GKRILVSGIITDSSIAFHIARVAQEQG--AQLVLTGFDRLRLIQRIT---DRL--PAKAPLLELDVQNEEHLASLAGRVT 79 (269)
T ss_dssp TCEEEECCCSSTTSHHHHHHHHHHHTT--CEEEEEECSCHHHHHHHH---TTS--SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHHCC--CEEEEEecChHHHHHHHH---Hhc--CCCceEEEccCCCHHHHHHHHHHHH
Confidence 467888888 48889999999988764 689999998753 22222 122 234778889987632 10
Q ss_pred --CC---cccEEEecchh
Q 022698 186 --DN---YFDVVVSAAFF 198 (293)
Q Consensus 186 --~~---~fD~Iv~~~~~ 198 (293)
-+ +.|++|.|...
T Consensus 80 ~~~g~~~~iD~lv~nAg~ 97 (269)
T 2h7i_A 80 EAIGAGNKLDGVVHSIGF 97 (269)
T ss_dssp HHHCTTCCEEEEEECCCC
T ss_pred HHhCCCCCceEEEECCcc
Confidence 12 79999988654
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.90 E-value=0.76 Score=40.65 Aligned_cols=99 Identities=18% Similarity=0.043 Sum_probs=58.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC---CCCC-----CC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD---VRSL-----PF 184 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d---~~~~-----~~ 184 (293)
..++.+||-+|+| .++..+++.....| ..+|+++|.|++.++.+++ .|.. .++..+ -.++ ..
T Consensus 193 ~~~g~~VlV~GaG--~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~ 262 (380)
T 1vj0_A 193 SFAGKTVVIQGAG--PLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDI 262 (380)
T ss_dssp CCBTCEEEEECCS--HHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECcC--HHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHH
Confidence 5678899999954 44444433333222 1499999999987776653 3432 222221 0010 01
Q ss_pred -CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 185 -GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 185 -~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
....+|+|+-+... ...+..+.+.|+++|+++.+...
T Consensus 263 ~~g~g~Dvvid~~g~------------------~~~~~~~~~~l~~~G~iv~~G~~ 300 (380)
T 1vj0_A 263 THGRGADFILEATGD------------------SRALLEGSELLRRGGFYSVAGVA 300 (380)
T ss_dssp TTTSCEEEEEECSSC------------------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred hCCCCCcEEEECCCC------------------HHHHHHHHHHHhcCCEEEEEecC
Confidence 12369999965321 12456677899999999886543
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.74 E-value=4.8 Score=33.57 Aligned_cols=80 Identities=21% Similarity=0.144 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeC-------------CHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDC-------------KKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDi-------------s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
.++++|=.|+ +|.++..+++.+.+.| ++|+.+|. +++.++...+.....+ .++.++.+|+.+
T Consensus 14 ~gk~~lVTGa-s~gIG~a~a~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~ 88 (280)
T 3pgx_A 14 QGRVAFITGA-ARGQGRSHAVRLAAEG--ADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRD 88 (280)
T ss_dssp TTCEEEEEST-TSHHHHHHHHHHHHTT--CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCC--CEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCC
Confidence 3457777775 5678888888887764 69999998 6777776666655544 458899999976
Q ss_pred CC-----CC-----CCcccEEEecchhh
Q 022698 182 LP-----FG-----DNYFDVVVSAAFFH 199 (293)
Q Consensus 182 ~~-----~~-----~~~fD~Iv~~~~~~ 199 (293)
.. +. -++.|++|.|....
T Consensus 89 ~~~v~~~~~~~~~~~g~id~lvnnAg~~ 116 (280)
T 3pgx_A 89 DAALRELVADGMEQFGRLDVVVANAGVL 116 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 32 00 14789999986553
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.74 E-value=4.9 Score=33.44 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=55.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeC-------------CHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDC-------------KKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDi-------------s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.+|. +++.++...+.....+ .++.++.+|+.+.
T Consensus 11 ~k~~lVTGa-s~GIG~a~a~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~ 85 (277)
T 3tsc_A 11 GRVAFITGA-ARGQGRAHAVRMAAEG--ADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRDF 85 (277)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHTT--CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCH
T ss_pred CCEEEEECC-ccHHHHHHHHHHHHcC--CEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCH
Confidence 457777774 5678888888887764 69999998 6676666655555544 4588999999864
Q ss_pred C-----CC-----CCcccEEEecchhh
Q 022698 183 P-----FG-----DNYFDVVVSAAFFH 199 (293)
Q Consensus 183 ~-----~~-----~~~fD~Iv~~~~~~ 199 (293)
. +. -++.|++|.|..+.
T Consensus 86 ~~v~~~~~~~~~~~g~id~lvnnAg~~ 112 (277)
T 3tsc_A 86 DRLRKVVDDGVAALGRLDIIVANAGVA 112 (277)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 2 11 15799999986653
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=88.72 E-value=3.5 Score=28.88 Aligned_cols=72 Identities=21% Similarity=0.128 Sum_probs=49.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C--CCCcccEE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F--GDNYFDVV 192 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~~fD~I 192 (293)
..+|+=+|+ |.++..++..+...| ..+|+++|.++..++... .. .+.+...|..+.. . .-..+|+|
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g-~~~v~~~~r~~~~~~~~~----~~----~~~~~~~d~~~~~~~~~~~~~~d~v 73 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSS-NYSVTVADHDLAALAVLN----RM----GVATKQVDAKDEAGLAKALGGFDAV 73 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCS-SEEEEEEESCHHHHHHHH----TT----TCEEEECCTTCHHHHHHHTTTCSEE
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCC-CceEEEEeCCHHHHHHHH----hC----CCcEEEecCCCHHHHHHHHcCCCEE
Confidence 457998987 888888888877654 268999999988665443 22 2567778876521 0 01358999
Q ss_pred Eecchh
Q 022698 193 VSAAFF 198 (293)
Q Consensus 193 v~~~~~ 198 (293)
+.+.+.
T Consensus 74 i~~~~~ 79 (118)
T 3ic5_A 74 ISAAPF 79 (118)
T ss_dssp EECSCG
T ss_pred EECCCc
Confidence 987654
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=3 Score=34.71 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=52.0
Q ss_pred CCeEEEEcCC-CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCG-RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.|++ +|.++..+++.+.+.| .+|+.++.++..-+.+++.....+ ++.++.+|+.+.. +
T Consensus 6 ~k~vlVTGas~~~gIG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~ 80 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAYGIAQSCFNQG--ATLAFTYLNESLEKRVRPIAQELN---SPYVYELDVSKEEHFKSLYNSVKK 80 (275)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTT--CEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678888876 4889999999988764 699999988752112222222222 2678889987632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 81 ~~g~id~lv~nAg~~ 95 (275)
T 2pd4_A 81 DLGSLDFIVHSVAFA 95 (275)
T ss_dssp HTSCEEEEEECCCCC
T ss_pred HcCCCCEEEECCccC
Confidence 124689999986543
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.42 E-value=5.9 Score=32.70 Aligned_cols=80 Identities=19% Similarity=0.129 Sum_probs=57.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++.+++.++...+.....+ ..++.++.+|+.+.. + .
T Consensus 10 ~k~vlVTG-as~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (262)
T 3pk0_A 10 GRSVVVTG-GTKGIGRGIATVFARAG--ANVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAVEE 85 (262)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45666555 56788999999887764 699999999988877766665543 135889999998632 0 0
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 86 ~g~id~lvnnAg~~ 99 (262)
T 3pk0_A 86 FGGIDVVCANAGVF 99 (262)
T ss_dssp HSCCSEEEECCCCC
T ss_pred hCCCCEEEECCCCC
Confidence 14789999886543
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=88.38 E-value=3.7 Score=33.63 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.|+ +|.++..+++.+.+.| ++|+.+|.+++.++...+.. + .++.++.+|+.+.. +.
T Consensus 6 gk~vlVTGa-s~gIG~a~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (247)
T 3rwb_A 6 GKTALVTGA-AQGIGKAIAARLAADG--ATVIVSDINAEGAKAAAASI---G--KKARAIAADISDPGSVKALFAEIQAL 77 (247)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHH---C--TTEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh---C--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 457777774 5678888888887764 69999999998766554443 2 34888999987632 00
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|..+.
T Consensus 78 ~g~id~lv~nAg~~ 91 (247)
T 3rwb_A 78 TGGIDILVNNASIV 91 (247)
T ss_dssp HSCCSEEEECCCCC
T ss_pred CCCCCEEEECCCCC
Confidence 14789999886653
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=88.33 E-value=1.5 Score=39.85 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=57.7
Q ss_pred CCCCCCeEEEEcC-C-CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------
Q 022698 112 DWSTVKTALDIGC-G-RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------ 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 183 (293)
...++.+||=+|+ | .|..+..+++.. ++++++++.++..++.+++ .|.. .++...-.+..
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~-----Ga~vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~d~~~~~~~~ 292 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAG-----GANPICVVSSPQKAEICRA----MGAE---AIIDRNAEGYRFWKDEN 292 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHH----HTCC---EEEETTTTTCCSEEETT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHc-----CCeEEEEECCHHHHHHHHh----hCCc---EEEecCcCccccccccc
Confidence 4567889998886 2 244444444443 4689999999987777654 3432 22221111100
Q ss_pred -----------------CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 -----------------FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 -----------------~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.....+|+|+-+.. . ..+....++|++||.++++.
T Consensus 293 ~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G-----------------~--~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 293 TQDPKEWKRFGKRIRELTGGEDIDIVFEHPG-----------------R--ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp EECHHHHHHHHHHHHHHHTSCCEEEEEECSC-----------------H--HHHHHHHHHEEEEEEEEESC
T ss_pred ccchHHHHHHHHHHHHHhCCCCCcEEEEcCC-----------------c--hhHHHHHHHhhCCcEEEEEe
Confidence 11246999986422 1 35667778999999998854
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.30 E-value=4.5 Score=33.22 Aligned_cols=76 Identities=16% Similarity=0.078 Sum_probs=54.2
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----CC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----GD 186 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 186 (293)
+++|=.| |+|.++..+++.+.+.|.+..|+.++.+++.++...+.. + .++.++.+|+.+.. + .-
T Consensus 3 k~~lVTG-as~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (254)
T 3kzv_A 3 KVILVTG-VSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY---G--DRFFYVVGDITEDSVLKQLVNAAVKGH 76 (254)
T ss_dssp CEEEECS-TTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH---G--GGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CEEEEEC-CCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh---C--CceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 3566555 567788889888877655579999999998777655543 2 35889999997642 1 01
Q ss_pred CcccEEEecchh
Q 022698 187 NYFDVVVSAAFF 198 (293)
Q Consensus 187 ~~fD~Iv~~~~~ 198 (293)
++.|++|.|...
T Consensus 77 g~id~lvnnAg~ 88 (254)
T 3kzv_A 77 GKIDSLVANAGV 88 (254)
T ss_dssp SCCCEEEEECCC
T ss_pred CCccEEEECCcc
Confidence 478999988665
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=88.24 E-value=8.7 Score=32.74 Aligned_cols=79 Identities=24% Similarity=0.268 Sum_probs=54.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC------------HHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK------------KRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis------------~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
++++|=.| |+|.++..+++.+.+.| ++|+++|.+ ++.++...+.....+ .++.++.+|+.+..
T Consensus 46 gk~~lVTG-as~GIG~aia~~la~~G--~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~ 120 (317)
T 3oec_A 46 GKVAFITG-AARGQGRTHAVRLAQDG--ADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRDLA 120 (317)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHTT--CEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCC--CeEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHH
Confidence 45677666 56778888988887764 699999986 566665555555544 45889999997632
Q ss_pred -----CC-----CCcccEEEecchhh
Q 022698 184 -----FG-----DNYFDVVVSAAFFH 199 (293)
Q Consensus 184 -----~~-----~~~fD~Iv~~~~~~ 199 (293)
+. -++.|++|.|..+.
T Consensus 121 ~v~~~~~~~~~~~g~iD~lVnnAg~~ 146 (317)
T 3oec_A 121 SLQAVVDEALAEFGHIDILVSNVGIS 146 (317)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 10 14789999986643
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=88.23 E-value=11 Score=31.90 Aligned_cols=80 Identities=14% Similarity=0.040 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE-EcCCCCCC-CC--CCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR-EGDVRSLP-FG--DNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~-~~d~~~~~-~~--~~~fD 190 (293)
.+++||=.| |+|.++.++++.+.+.| .+|++++.++...+...+...... ..++.++ .+|+.+.. +. -..+|
T Consensus 10 ~~~~vlVTG-atG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d 85 (342)
T 1y1p_A 10 EGSLVLVTG-ANGFVASHVVEQLLEHG--YKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAA 85 (342)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHCC--CEEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCC
Confidence 456788776 57899999999887664 599999998876554443332211 1347888 78987643 11 13689
Q ss_pred EEEecchh
Q 022698 191 VVVSAAFF 198 (293)
Q Consensus 191 ~Iv~~~~~ 198 (293)
+|+.+...
T Consensus 86 ~vih~A~~ 93 (342)
T 1y1p_A 86 GVAHIASV 93 (342)
T ss_dssp EEEECCCC
T ss_pred EEEEeCCC
Confidence 99987554
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=88.15 E-value=5.6 Score=33.24 Aligned_cols=79 Identities=18% Similarity=0.116 Sum_probs=51.8
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.|+++ |.++..+++.+.+.| .+|++++.++..-+.+.+.....+ ++.++.+|+.+.. +
T Consensus 21 ~k~vlVTGas~~~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~ 95 (285)
T 2p91_A 21 GKRALITGVANERSIAYGIAKSFHREG--AQLAFTYATPKLEKRVREIAKGFG---SDLVVKCDVSLDEDIKNLKKFLEE 95 (285)
T ss_dssp TCEEEECCCSSTTSHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHH
Confidence 46788888763 789999999887764 699999998752222222222222 2577889987632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 96 ~~g~iD~lv~~Ag~~ 110 (285)
T 2p91_A 96 NWGSLDIIVHSIAYA 110 (285)
T ss_dssp HTSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 014689999986543
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=88.13 E-value=5 Score=33.54 Aligned_cols=80 Identities=19% Similarity=0.165 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC----------------HHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK----------------KRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis----------------~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
.++++|=.|++ |.++..+++.+.+.| ++|+.+|.+ ++.++...+.....+ .++.++.+|
T Consensus 10 ~~k~~lVTGas-~gIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D 84 (286)
T 3uve_A 10 EGKVAFVTGAA-RGQGRSHAVRLAQEG--ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--RRIVTAEVD 84 (286)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTT--CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--CCEEEEECC
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCC--CeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--CceEEEEcC
Confidence 35677777765 568888888887764 699999987 566665555544443 458999999
Q ss_pred CCCCC-----C-----CCCcccEEEecchhh
Q 022698 179 VRSLP-----F-----GDNYFDVVVSAAFFH 199 (293)
Q Consensus 179 ~~~~~-----~-----~~~~fD~Iv~~~~~~ 199 (293)
+.+.. + .-++.|++|.|..+.
T Consensus 85 v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 115 (286)
T 3uve_A 85 VRDYDALKAAVDSGVEQLGRLDIIVANAGIG 115 (286)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence 98632 0 014789999986643
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=88.11 E-value=0.25 Score=43.93 Aligned_cols=102 Identities=19% Similarity=0.073 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|+=+|+ |.++..+++.+... +.+|+++|.++..++.+.+.. +.. +.....+..++...-...|+|+.
T Consensus 167 ~g~~V~ViG~--G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~---g~~--~~~~~~~~~~l~~~l~~aDvVi~ 237 (377)
T 2vhw_A 167 EPADVVVIGA--GTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEF---CGR--IHTRYSSAYELEGAVKRADLVIG 237 (377)
T ss_dssp CCCEEEEECC--SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TTS--SEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhc---CCe--eEeccCCHHHHHHHHcCCCEEEE
Confidence 4678999998 67777777766554 359999999998776665432 211 21111111111100135799997
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
........ .+..+.++..+.++|||.++.+.
T Consensus 238 ~~~~p~~~------------t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 238 AVLVPGAK------------APKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CCCCTTSC------------CCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCcCCCC------------CcceecHHHHhcCCCCcEEEEEe
Confidence 53221111 01112344567789999987755
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=88.09 E-value=7 Score=32.15 Aligned_cols=78 Identities=24% Similarity=0.170 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEE-eCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGL-DCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~v-Dis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+ +.++..++...+.....+ .++.++.+|+.+.. +
T Consensus 4 ~k~vlVTG-as~gIG~aia~~l~~~G--~~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (258)
T 3oid_A 4 NKCALVTG-SSRGVGKAAAIRLAENG--YNIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDE 78 (258)
T ss_dssp CCEEEESS-CSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEec-CCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45666555 56778999999887764 588886 888887776666665544 45899999998642 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|...
T Consensus 79 ~~g~id~lv~nAg~ 92 (258)
T 3oid_A 79 TFGRLDVFVNNAAS 92 (258)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCCCEEEECCCC
Confidence 01468999988654
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=87.82 E-value=9 Score=31.87 Aligned_cols=117 Identities=18% Similarity=0.157 Sum_probs=67.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHH-HHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRT-TLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~-l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|++++.++.. .+...+.....+ .++.++.+|+.+.. +.
T Consensus 29 ~k~vlVTG-as~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 29 GKVALVTG-AGRGIGREMAMELGRRG--CKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVK 103 (283)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 45666665 56788999999888764 689999988643 343334444433 34888899987632 00
Q ss_pred -CCcccEEEecchhhhhccccCcchhhhH-------HHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 -DNYFDVVVSAAFFHTVGKEYGHRTVEAA-------AERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-++.|++|.|.................. .....+++.+.+.++.+|.++.+.
T Consensus 104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 1468999988654322110000000000 011234566667777788887743
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=87.71 E-value=4.2 Score=33.55 Aligned_cols=78 Identities=18% Similarity=0.056 Sum_probs=50.0
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.|+++ |.++..+++.+.+.| .+|+.++.++...+.+.+.....+ ...++.+|+.+.. +
T Consensus 9 ~k~vlVTGas~~~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T 1qsg_A 9 GKRILVTGVASKLSIAYGIAQAMHREG--AELAFTYQNDKLKGRVEEFAAQLG---SDIVLQCDVAEDASIDTMFAELGK 83 (265)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTT--CEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCC--CEEEEEcCcHHHHHHHHHHHHhcC---CcEEEEccCCCHHHHHHHHHHHHH
Confidence 45788888753 789999999888764 689999988722122222222222 2467888987632 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|...
T Consensus 84 ~~g~iD~lv~~Ag~ 97 (265)
T 1qsg_A 84 VWPKFDGFVHSIGF 97 (265)
T ss_dssp TCSSEEEEEECCCC
T ss_pred HcCCCCEEEECCCC
Confidence 12468999998654
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.70 E-value=6.6 Score=32.45 Aligned_cols=76 Identities=21% Similarity=0.144 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+.. + .++.++.+|+.+.. +.
T Consensus 6 ~k~vlITGa-s~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (263)
T 2a4k_A 6 GKTILVTGA-ASGIGRAALDLFAREG--ASLVAVDREERLLAEAVAAL---E--AEAIAVVADVSDPKAVEAVFAEALEE 77 (263)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTC---C--SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh---c--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456776764 6778999999887764 69999999987665443322 1 34888999987632 10
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 78 ~g~iD~lvnnAg~~ 91 (263)
T 2a4k_A 78 FGRLHGVAHFAGVA 91 (263)
T ss_dssp HSCCCEEEEGGGGT
T ss_pred cCCCcEEEECCCCC
Confidence 14689999987654
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=87.61 E-value=5.4 Score=32.08 Aligned_cols=74 Identities=16% Similarity=0.014 Sum_probs=51.3
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-------CCCCccc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-------FGDNYFD 190 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD 190 (293)
++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++.+.+.. ..++.++.+|+.+.. .-...+|
T Consensus 3 ~vlVTGa-s~gIG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~d 74 (230)
T 3guy_A 3 LIVITGA-SSGLGAELAKLYDAEG--KATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASHQEVEQLFEQLDSIPS 74 (230)
T ss_dssp CEEEEST-TSHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCHHHHHHHHHSCSSCCS
T ss_pred EEEEecC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCHHHHHHHHHHHhhcCC
Confidence 4666664 5778889998887764 68999999998766554433 245788899987632 1123469
Q ss_pred EEEecchhh
Q 022698 191 VVVSAAFFH 199 (293)
Q Consensus 191 ~Iv~~~~~~ 199 (293)
+++.|....
T Consensus 75 ~lv~~Ag~~ 83 (230)
T 3guy_A 75 TVVHSAGSG 83 (230)
T ss_dssp EEEECCCCC
T ss_pred EEEEeCCcC
Confidence 999886543
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=87.55 E-value=6.5 Score=28.54 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=64.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDV 191 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~ 191 (293)
..+|+=+|+ |.++..+++.+...| .+|+++|.+++.++.+ ...+ ..++.+|..+.. .....+|+
T Consensus 6 ~~~v~I~G~--G~iG~~~a~~l~~~g--~~v~~~d~~~~~~~~~----~~~~----~~~~~~d~~~~~~l~~~~~~~~d~ 73 (144)
T 2hmt_A 6 NKQFAVIGL--GRFGGSIVKELHRMG--HEVLAVDINEEKVNAY----ASYA----THAVIANATEENELLSLGIRNFEY 73 (144)
T ss_dssp CCSEEEECC--SHHHHHHHHHHHHTT--CCCEEEESCHHHHHTT----TTTC----SEEEECCTTCHHHHHTTTGGGCSE
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH----HHhC----CEEEEeCCCCHHHHHhcCCCCCCE
Confidence 346888886 888888888887654 5899999988754322 1222 345667765421 11246899
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcc
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMED 255 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~ 255 (293)
|+...+-.. +....+....+.+.++ .++.. ...+...+.+++.|...
T Consensus 74 vi~~~~~~~--------------~~~~~~~~~~~~~~~~-~ii~~--~~~~~~~~~l~~~g~~~ 120 (144)
T 2hmt_A 74 VIVAIGANI--------------QASTLTTLLLKELDIP-NIWVK--AQNYYHHKVLEKIGADR 120 (144)
T ss_dssp EEECCCSCH--------------HHHHHHHHHHHHTTCS-EEEEE--CCSHHHHHHHHHHTCSE
T ss_pred EEECCCCch--------------HHHHHHHHHHHHcCCC-eEEEE--eCCHHHHHHHHHcCCCE
Confidence 997644210 1112233334445665 44432 23556667788888653
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.50 E-value=4.3 Score=34.03 Aligned_cols=79 Identities=20% Similarity=0.061 Sum_probs=55.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| ++|+.+|.+++.++...+.....+. ..+.++.+|+.+.. + .
T Consensus 33 gk~~lVTG-as~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~ 108 (281)
T 4dry_A 33 GRIALVTG-GGTGVGRGIAQALSAEG--YSVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVGDPDQVAALFAAVRAE 108 (281)
T ss_dssp -CEEEETT-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCC-CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45677665 56778999999887764 6999999999887766665544331 23588999997642 0 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|...
T Consensus 109 ~g~iD~lvnnAG~ 121 (281)
T 4dry_A 109 FARLDLLVNNAGS 121 (281)
T ss_dssp HSCCSEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1468999998654
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.45 E-value=4.5 Score=33.60 Aligned_cols=117 Identities=19% Similarity=0.112 Sum_probs=69.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEE-eCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGL-DCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~v-Dis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.+ ..++...+...+.....+ .++.++.+|+.+.. +.
T Consensus 27 ~k~~lVTGa-s~GIG~aia~~la~~G--~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 27 NKVAIVTGA-SRGIGAAIAARLASDG--FTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp CCEEEEESC-SSHHHHHHHHHHHHHT--CEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 457777764 5678888888887664 588777 455556665555555544 35889999998632 00
Q ss_pred -CCcccEEEecchhhhhccccCcchhhh-------HHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 -DNYFDVVVSAAFFHTVGKEYGHRTVEA-------AAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-++.|++|.|..+....+-........ -.....+++.+.+.++++|.++.+.
T Consensus 102 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 102 AFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp HHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 147999999866532221000110000 0111235566667778888888754
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=87.42 E-value=3.2 Score=34.27 Aligned_cols=79 Identities=25% Similarity=0.176 Sum_probs=52.2
Q ss_pred CCeEEEEcCC-CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCG-RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|=.|++ +|.++..+++.+.+.| .+|+.++.++..-+.+.+.....+ .+.++.+|+.+.. +.
T Consensus 8 ~k~vlVTGas~~~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~ 82 (261)
T 2wyu_A 8 GKKALVMGVTNQRSLGFAIAAKLKEAG--AEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAGVKE 82 (261)
T ss_dssp TCEEEEESCCSSSSHHHHHHHHHHHHT--CEEEEEESCGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHhcC---CcEEEECCCCCHHHHHHHHHHHHH
Confidence 4678888886 3789999998887764 689999998752222222222222 2678889987632 10
Q ss_pred -CCcccEEEecchhh
Q 022698 186 -DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 83 ~~g~iD~lv~~Ag~~ 97 (261)
T 2wyu_A 83 AFGGLDYLVHAIAFA 97 (261)
T ss_dssp HHSSEEEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 14689999986543
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=87.38 E-value=5.1 Score=33.15 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=50.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----CC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----GD 186 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 186 (293)
++||=-|++ +.++..+++.+.+.| ++|+.+|.+++.++...+ .+ .++.++++|+.+.. + .-
T Consensus 3 K~vlVTGas-~GIG~aia~~la~~G--a~V~~~~~~~~~~~~~~~----~~--~~~~~~~~Dv~~~~~v~~~v~~~~~~~ 73 (247)
T 3ged_A 3 RGVIVTGGG-HGIGKQICLDFLEAG--DKVCFIDIDEKRSADFAK----ER--PNLFYFHGDVADPLTLKKFVEYAMEKL 73 (247)
T ss_dssp CEEEEESTT-SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHT----TC--TTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CEEEEecCC-CHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----hc--CCEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 466756654 558888888887764 799999999876553322 12 34788899997632 0 12
Q ss_pred CcccEEEecchh
Q 022698 187 NYFDVVVSAAFF 198 (293)
Q Consensus 187 ~~fD~Iv~~~~~ 198 (293)
++.|++|.|...
T Consensus 74 g~iDiLVNNAG~ 85 (247)
T 3ged_A 74 QRIDVLVNNACR 85 (247)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 679999988654
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=87.38 E-value=9.4 Score=31.26 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=55.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
+++||=.| |+|.++..+++.+.+.| .+|++++.++..++...+.....+ .++.++.+|+.+.. +.
T Consensus 14 ~k~vlITG-asggiG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (266)
T 1xq1_A 14 AKTVLVTG-GTKGIGHAIVEEFAGFG--AVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSM 88 (266)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHH
Confidence 45677665 57889999999887764 699999999887776655555443 34888999987632 11
Q ss_pred -CCcccEEEecchh
Q 022698 186 -DNYFDVVVSAAFF 198 (293)
Q Consensus 186 -~~~fD~Iv~~~~~ 198 (293)
.++.|+||.+...
T Consensus 89 ~~~~id~li~~Ag~ 102 (266)
T 1xq1_A 89 FGGKLDILINNLGA 102 (266)
T ss_dssp HTTCCSEEEEECCC
T ss_pred hCCCCcEEEECCCC
Confidence 1578999988654
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.25 E-value=3.1 Score=34.90 Aligned_cols=78 Identities=21% Similarity=0.097 Sum_probs=56.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.+|.+++.++...+.....+ .++.++.+|+.+.. + .
T Consensus 8 gk~vlVTGa-s~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (280)
T 3tox_A 8 GKIAIVTGA-SSGIGRAAALLFAREG--AKVVVTARNGNALAELTDEIAGGG--GEAAALAGDVGDEALHEALVELAVRR 82 (280)
T ss_dssp TCEEEESST-TSHHHHHHHHHHHHTT--CEEEECCSCHHHHHHHHHHHTTTT--CCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456776664 5778888988887764 699999999988877766655443 45888999987632 0 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|...
T Consensus 83 ~g~iD~lvnnAg~ 95 (280)
T 3tox_A 83 FGGLDTAFNNAGA 95 (280)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1478999988654
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=87.24 E-value=2.2 Score=41.68 Aligned_cols=48 Identities=17% Similarity=0.067 Sum_probs=35.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCC-cEEEEEeCCHHHHHHHHHHH
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSL-GRVVGLDCKKRTTLSTLRTA 163 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~-~~v~~vDis~~~l~~a~~~~ 163 (293)
..+|+|+-||.|.++.-+.+.....+.. ..+.++|+++.|++.-+.|.
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 3579999999999998876653211101 26789999999988888774
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.04 E-value=6.4 Score=32.92 Aligned_cols=80 Identities=18% Similarity=0.077 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeC-CHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDC-KKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDi-s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+|. +++.++...+...... ..++.++.+|+.+.. +
T Consensus 25 ~k~~lVTG-as~GIG~~ia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~ 100 (281)
T 3v2h_A 25 TKTAVITG-STSGIGLAIARTLAKAG--ANIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVAD 100 (281)
T ss_dssp TCEEEEET-CSSHHHHHHHHHHHHTT--CEEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCC--CEEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45777777 45678889998888764 69999998 6666665555544331 245889999987632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 101 ~~g~iD~lv~nAg~~ 115 (281)
T 3v2h_A 101 RFGGADILVNNAGVQ 115 (281)
T ss_dssp HTSSCSEEEECCCCC
T ss_pred HCCCCCEEEECCCCC
Confidence 124789999986653
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.94 E-value=8.4 Score=31.16 Aligned_cols=75 Identities=13% Similarity=0.026 Sum_probs=53.9
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----CC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----GD 186 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 186 (293)
+++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+... .++.++.+|+.+.. + ..
T Consensus 4 k~vlVTGa-s~GIG~a~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~ 75 (235)
T 3l6e_A 4 GHIIVTGA-GSGLGRALTIGLVERG--HQVSMMGRRYQRLQQQELLLG-----NAVIGIVADLAHHEDVDVAFAAAVEWG 75 (235)
T ss_dssp CEEEEEST-TSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECC-CCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhc-----CCceEEECCCCCHHHHHHHHHHHHHhc
Confidence 46776764 5778888988887764 699999999987776655542 24889999987632 0 01
Q ss_pred CcccEEEecchhh
Q 022698 187 NYFDVVVSAAFFH 199 (293)
Q Consensus 187 ~~fD~Iv~~~~~~ 199 (293)
++.|++|.|....
T Consensus 76 g~id~lvnnAg~~ 88 (235)
T 3l6e_A 76 GLPELVLHCAGTG 88 (235)
T ss_dssp CSCSEEEEECCCC
T ss_pred CCCcEEEECCCCC
Confidence 4689999886653
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=86.77 E-value=0.21 Score=42.65 Aligned_cols=93 Identities=17% Similarity=0.037 Sum_probs=54.5
Q ss_pred CCCCCeEEEEcCC--CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC-CCCCCCCCcc
Q 022698 113 WSTVKTALDIGCG--RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV-RSLPFGDNYF 189 (293)
Q Consensus 113 ~~~~~~vLDiG~G--~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~f 189 (293)
..++.+||-.|++ .|..+..+++. . +++|+++|.+++.++.+++ .|.. .++..+- .+....-+.+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~---~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~ 190 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARA---M--GLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAWGGL 190 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHH---T--TCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHTTSE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHH---C--CCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHhcCc
Confidence 5678899999962 24444444443 2 3699999999887766643 3432 1222110 1110000468
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|+|+. ..- ..++...+.|+++|+++.+.
T Consensus 191 d~vid-~g~-------------------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 191 DLVLE-VRG-------------------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp EEEEE-CSC-------------------TTHHHHHTTEEEEEEEEEC-
T ss_pred eEEEE-CCH-------------------HHHHHHHHhhccCCEEEEEe
Confidence 99986 321 13456778999999988754
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.76 E-value=0.3 Score=42.19 Aligned_cols=96 Identities=21% Similarity=0.189 Sum_probs=54.8
Q ss_pred CCCCC-eEEEEcC--CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC-CC-C-CCCC
Q 022698 113 WSTVK-TALDIGC--GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV-RS-L-PFGD 186 (293)
Q Consensus 113 ~~~~~-~vLDiG~--G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~-~-~~~~ 186 (293)
..++. +||-.|+ |.|..+..+++.. +++|++++.+++.++.+++ .|... + +-..+. .+ . ....
T Consensus 146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-----Ga~vi~~~~~~~~~~~~~~----lGa~~-~-i~~~~~~~~~~~~~~~ 214 (328)
T 1xa0_A 146 LTPERGPVLVTGATGGVGSLAVSMLAKR-----GYTVEASTGKAAEHDYLRV----LGAKE-V-LAREDVMAERIRPLDK 214 (328)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHT-----TCCEEEEESCTTCHHHHHH----TTCSE-E-EECC---------CCS
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHC-----CCEEEEEECCHHHHHHHHH----cCCcE-E-EecCCcHHHHHHHhcC
Confidence 45554 8999987 2344444444443 3689999999887766643 34321 1 111111 01 0 1123
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+.+|+|+.+..- ..+....+.|+++|+++++..
T Consensus 215 ~~~d~vid~~g~-------------------~~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 215 QRWAAAVDPVGG-------------------RTLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp CCEEEEEECSTT-------------------TTHHHHHHTEEEEEEEEECSC
T ss_pred CcccEEEECCcH-------------------HHHHHHHHhhccCCEEEEEee
Confidence 469999865321 134567789999999988653
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=86.71 E-value=5.1 Score=33.12 Aligned_cols=117 Identities=13% Similarity=0.013 Sum_probs=68.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCH---HHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C---
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKK---RTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F--- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~---~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~--- 184 (293)
++++|=.|+ +|.++..+++.+.+.| ++|+.++.+. +.++...+.....+ .++.++.+|+.+.. +
T Consensus 11 ~k~vlVTGa-s~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~ 85 (262)
T 3ksu_A 11 NKVIVIAGG-IKNLGALTAKTFALES--VNLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFA 85 (262)
T ss_dssp TCEEEEETC-SSHHHHHHHHHHTTSS--CEEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHH
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHH
Confidence 457777775 5668899999888764 6899987653 34444444444433 45889999998642 1
Q ss_pred --CCCcccEEEecchhhhhccccCcchhhh-------HHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 185 --GDNYFDVVVSAAFFHTVGKEYGHRTVEA-------AAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 --~~~~fD~Iv~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.-++.|++|.|........-........ -..+..+.+.+.+.++++|.++++.
T Consensus 86 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is 147 (262)
T 3ksu_A 86 EKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA 147 (262)
T ss_dssp HHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 0157999998865432211000000000 0112235566666777888888754
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=86.71 E-value=0.47 Score=41.61 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=54.3
Q ss_pred CC-CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc-CCCCCCCCCCccc
Q 022698 113 WS-TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-DVRSLPFGDNYFD 190 (293)
Q Consensus 113 ~~-~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~fD 190 (293)
.. ++.+||=+|+ |.++..+++..... +++|+++|.+++.++.+++ ..|.. .++.. +........+.+|
T Consensus 177 ~~~~g~~VlV~Ga--G~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~---~vi~~~~~~~~~~~~~g~D 246 (357)
T 2cf5_A 177 LKQPGLRGGILGL--GGVGHMGVKIAKAM--GHHVTVISSSNKKREEALQ---DLGAD---DYVIGSDQAKMSELADSLD 246 (357)
T ss_dssp TTSTTCEEEEECC--SHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHT---TSCCS---CEEETTCHHHHHHSTTTEE
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH---HcCCc---eeeccccHHHHHHhcCCCC
Confidence 45 7789999986 44554444433333 3699999999886655542 23432 11211 1000000123699
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+|+-...-. ..++...+.|+++|+++.+.
T Consensus 247 ~vid~~g~~------------------~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 247 YVIDTVPVH------------------HALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp EEEECCCSC------------------CCSHHHHTTEEEEEEEEECS
T ss_pred EEEECCCCh------------------HHHHHHHHHhccCCEEEEeC
Confidence 998653211 12244567899999988754
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=86.58 E-value=12 Score=30.80 Aligned_cols=77 Identities=26% Similarity=0.205 Sum_probs=52.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CCCCccc
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FGDNYFD 190 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD 190 (293)
++++|=-| |++.++..+++.+.+.| ++|+.+|.+.. +.+.+..+..+ .++.++.+|+.+.. ...++.|
T Consensus 9 GKvalVTG-as~GIG~aiA~~la~~G--a~Vvi~~r~~~--~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iD 81 (247)
T 4hp8_A 9 GRKALVTG-ANTGLGQAIAVGLAAAG--AEVVCAARRAP--DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFD 81 (247)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTT--CEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred CCEEEEeC-cCCHHHHHHHHHHHHcC--CEEEEEeCCcH--HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCC
Confidence 44555444 56678888988888774 69999998753 22333444444 34888999987632 3357899
Q ss_pred EEEecchhh
Q 022698 191 VVVSAAFFH 199 (293)
Q Consensus 191 ~Iv~~~~~~ 199 (293)
++|.|..+.
T Consensus 82 iLVNNAGi~ 90 (247)
T 4hp8_A 82 ILVNNAGII 90 (247)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999986543
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=86.54 E-value=10 Score=39.20 Aligned_cols=132 Identities=8% Similarity=-0.013 Sum_probs=75.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC------------CC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR------------SL 182 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~------------~~ 182 (293)
...+++|+.||.|.++.-+.+. |....+.++|+++.+.+.-+.|.. ...++..|+. +.
T Consensus 850 ~~l~viDLFsG~GGlslGfe~A----G~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~gdi~~~ 919 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQA----GISETLWAIEMWDPAAQAFRLNNP------GTTVFTEDCNVLLKLVMAGEVTNS 919 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHT----TSEEEEEEECCSHHHHHHHHHHCT------TSEEECSCHHHHHHHHTTTCSBCS
T ss_pred CCceEEecccCccHHHHHHHHC----CCCceEEEEECCHHHHHHHHHhCC------CCcEeeccHHHHhHhhhccchhhh
Confidence 3458999999999999877643 101258899999998887777742 1334444432 11
Q ss_pred ---CCC-CCcccEEEecchhhhhccccCcchhhhHHHHH----HHHHHHHHcccCCcEEEEEcC------CC---chHHH
Q 022698 183 ---PFG-DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERM----RVLGEMVRVLKPGGVGVVWDL------LH---VPEYV 245 (293)
Q Consensus 183 ---~~~-~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~LkpgG~l~~~~~------~~---~~~~~ 245 (293)
.++ .+.+|+|+..+|...+..- +........+.. .-+-++...++|.-+ ++=++ .. ...+.
T Consensus 920 ~~~~lp~~~~vDvl~GGpPCQ~FS~a-gr~~~~~~~d~R~~L~~~~lriv~~~rPk~f-v~ENV~glls~~~g~~~~~il 997 (1330)
T 3av4_A 920 LGQRLPQKGDVEMLCGGPPCQGFSGM-NRFNSRTYSKFKNSLVVSFLSYCDYYRPRFF-LLENVRNFVSYRRSMVLKLTL 997 (1330)
T ss_dssp SCCBCCCTTTCSEEEECCCCTTTCSS-SCCCHHHHHHHHHSHHHHHHHHHHHHCCSEE-EEEEEGGGGTTTTTHHHHHHH
T ss_pred hhhhccccCccceEEecCCCcccccc-cccccccccchhhHHHHHHHHHHHHhcCcEE-EEeccHHHhccCccHHHHHHH
Confidence 011 2468999999998766522 211001111211 123334456788633 33111 11 23567
Q ss_pred HHHHHcCCcceEE
Q 022698 246 RRLQELKMEDIRV 258 (293)
Q Consensus 246 ~~l~~~gf~~~~~ 258 (293)
..|.+.||.....
T Consensus 998 ~~L~~lGY~v~~~ 1010 (1330)
T 3av4_A 998 RCLVRMGYQCTFG 1010 (1330)
T ss_dssp HHHHHHTCEEEEE
T ss_pred HHHHhcCCeeeEE
Confidence 7788899975443
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.53 E-value=4.5 Score=33.04 Aligned_cols=78 Identities=19% Similarity=0.152 Sum_probs=58.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.+|.+++.++...+.....+ .++.++.+|+.+.. +.
T Consensus 9 ~k~vlITGa-s~giG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 9 NKVGIVTGS-GGGIGQAYAEALAREG--AAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 557787774 6778889999888764 689999999998887777666554 45889999998742 00
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|..+
T Consensus 84 ~g~id~li~~Ag~ 96 (253)
T 3qiv_A 84 FGGIDYLVNNAAI 96 (253)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 1478999998654
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=86.24 E-value=12 Score=30.86 Aligned_cols=79 Identities=20% Similarity=0.150 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeC-CHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDC-KKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDi-s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.| |+|.++..+++.+.+.| ++|+.++. ++...+...+.....+ .++.++.+|+.+.. +
T Consensus 28 ~k~vlVTG-as~gIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~~ 102 (269)
T 4dmm_A 28 DRIALVTG-ASRGIGRAIALELAAAG--AKVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQESEVEALFAAVIE 102 (269)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCC--CEEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 45666665 56778999998887764 68999888 6666666665555544 35889999998742 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 103 ~~g~id~lv~nAg~~ 117 (269)
T 4dmm_A 103 RWGRLDVLVNNAGIT 117 (269)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 014789999986543
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=86.11 E-value=10 Score=30.82 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=53.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.| |+|.++..+++.+.+.| ++|+.+|.+++.++...+... .+..++.+|+.+.. +.
T Consensus 9 gk~~lVTG-as~gIG~a~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (248)
T 3op4_A 9 GKVALVTG-ASRGIGKAIAELLAERG--AKVIGTATSESGAQAISDYLG-----DNGKGMALNVTNPESIEAVLKAITDE 80 (248)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc-----ccceEEEEeCCCHHHHHHHHHHHHHH
Confidence 45677666 45778888988887764 699999999987766555443 23678889987642 10
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|..+.
T Consensus 81 ~g~iD~lv~nAg~~ 94 (248)
T 3op4_A 81 FGGVDILVNNAGIT 94 (248)
T ss_dssp HCCCSEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 14789999986543
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.04 E-value=12 Score=30.30 Aligned_cols=77 Identities=21% Similarity=0.170 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-CCCc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-GDNY 188 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~ 188 (293)
++++||=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+... .++.+..+|+.+.. + ..++
T Consensus 13 ~~k~vlVTGa-s~gIG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~ 84 (249)
T 3f9i_A 13 TGKTSLITGA-SSGIGSAIARLLHKLG--SKVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKEECSNLISKTSN 84 (249)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHTCSC
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHhc-----cCccEEEcCCCCHHHHHHHHHhcCC
Confidence 4567886664 6778889988887764 699999999987766554432 34788899987632 1 1246
Q ss_pred ccEEEecchhh
Q 022698 189 FDVVVSAAFFH 199 (293)
Q Consensus 189 fD~Iv~~~~~~ 199 (293)
.|+++.|....
T Consensus 85 id~li~~Ag~~ 95 (249)
T 3f9i_A 85 LDILVCNAGIT 95 (249)
T ss_dssp CSEEEECCC--
T ss_pred CCEEEECCCCC
Confidence 99999886643
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=85.80 E-value=3.3 Score=36.23 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=56.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCH---HHHHHHHHHHHhcCCCCceEEEEcCCCCCC--C--CCCc
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKK---RTTLSTLRTAKMEGVQEYVTAREGDVRSLP--F--GDNY 188 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~---~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~--~~~~ 188 (293)
+.+||-+|+ |.++..+++..... +++|+++|.++ +.++.+++ .|. ..+..+ ++. . ..+.
T Consensus 181 g~~VlV~Ga--G~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~----~ga----~~v~~~--~~~~~~~~~~~~ 246 (366)
T 2cdc_A 181 CRKVLVVGT--GPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEE----TKT----NYYNSS--NGYDKLKDSVGK 246 (366)
T ss_dssp TCEEEEESC--HHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHH----HTC----EEEECT--TCSHHHHHHHCC
T ss_pred CCEEEEECC--CHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHH----hCC----ceechH--HHHHHHHHhCCC
Confidence 789999997 55665555544443 35999999998 66665543 342 112111 111 0 0146
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHH-HHHHHcccCCcEEEEEcCC
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVL-GEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~ 239 (293)
+|+|+.+.... ..+ +.+.+.|+++|.++++...
T Consensus 247 ~d~vid~~g~~------------------~~~~~~~~~~l~~~G~iv~~g~~ 280 (366)
T 2cdc_A 247 FDVIIDATGAD------------------VNILGNVIPLLGRNGVLGLFGFS 280 (366)
T ss_dssp EEEEEECCCCC------------------THHHHHHGGGEEEEEEEEECSCC
T ss_pred CCEEEECCCCh------------------HHHHHHHHHHHhcCCEEEEEecC
Confidence 99999764311 134 6678899999999886543
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=85.70 E-value=6.6 Score=32.17 Aligned_cols=75 Identities=25% Similarity=0.118 Sum_probs=52.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++.+++.++...+.. ..++.++.+|+.+.. +.
T Consensus 5 ~k~vlVTG-as~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (254)
T 1hdc_A 5 GKTVIITG-GARGLGAEAARQAVAAG--ARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CSEEEEET-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 45677776 46778888988887764 69999999987665443322 234788899987632 00
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|...
T Consensus 77 ~g~iD~lv~nAg~ 89 (254)
T 1hdc_A 77 FGSVDGLVNNAGI 89 (254)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1368999988654
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=85.68 E-value=2.9 Score=36.39 Aligned_cols=90 Identities=23% Similarity=0.192 Sum_probs=54.5
Q ss_pred CeEEEEcCCCChHHHHH-HHHh-hhcCCCcE-EEEEeCCHH---HHHHHHHHHHhcCCCCceEEEEcCCCCCCCC-----
Q 022698 117 KTALDIGCGRGILLNAV-ATQF-KKTGSLGR-VVGLDCKKR---TTLSTLRTAKMEGVQEYVTAREGDVRSLPFG----- 185 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l-~~~~-~~~~~~~~-v~~vDis~~---~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----- 185 (293)
.+||-+|+ |.++... .+.. ... +++ |+++|.+++ .++.+++ .|. ... |..+..+.
T Consensus 174 ~~VlV~Ga--G~vG~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~~----lGa----~~v--~~~~~~~~~i~~~ 239 (357)
T 2b5w_A 174 SSAFVLGN--GSLGLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIEE----LDA----TYV--DSRQTPVEDVPDV 239 (357)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHHH----TTC----EEE--ETTTSCGGGHHHH
T ss_pred CEEEEECC--CHHHHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHHH----cCC----ccc--CCCccCHHHHHHh
Confidence 89999997 5555555 4443 322 345 999999887 6776653 342 111 22211110
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.+.+|+|+-...- ...++.+.+.|+++|+++.+..
T Consensus 240 ~gg~Dvvid~~g~------------------~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 240 YEQMDFIYEATGF------------------PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp SCCEEEEEECSCC------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCCCCEEEECCCC------------------hHHHHHHHHHHhcCCEEEEEeC
Confidence 2368999854221 1345677889999999988654
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=85.66 E-value=0.39 Score=41.51 Aligned_cols=98 Identities=16% Similarity=0.127 Sum_probs=56.4
Q ss_pred CCCCC-eEEEEcCC--CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-CCCCCc
Q 022698 113 WSTVK-TALDIGCG--RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-PFGDNY 188 (293)
Q Consensus 113 ~~~~~-~vLDiG~G--~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~ 188 (293)
..++. +||-.|++ .|..+..+++.. ++++++++.+++.++.+++ .|...-+.....+.... ....+.
T Consensus 147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-----Ga~vi~~~~~~~~~~~~~~----lGa~~v~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 147 LSPEKGSVLVTGATGGVGGIAVSMLNKR-----GYDVVASTGNREAADYLKQ----LGASEVISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp CCGGGCCEEEESTTSHHHHHHHHHHHHH-----TCCEEEEESSSSTHHHHHH----HTCSEEEEHHHHCSSCCCSSCCCC
T ss_pred cCCCCceEEEECCCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCchHHHHHHhhcCC
Confidence 44554 89999972 244444445443 3689999999887776654 24321111101111111 122346
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+|+|+.+.. . ..+....+.|+++|+++++..
T Consensus 218 ~d~vid~~g-----------------~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 218 WQGAVDPVG-----------------G--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp EEEEEESCC-----------------T--HHHHHHHTTEEEEEEEEECCC
T ss_pred ccEEEECCc-----------------H--HHHHHHHHhhcCCCEEEEEec
Confidence 999986532 1 245677889999999988654
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=85.65 E-value=14 Score=31.85 Aligned_cols=116 Identities=14% Similarity=-0.011 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-EGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
...+|.=+|+ |.++..++..+...+...+++.+|++++.++-....+.. ......+.+...|...+ ...|+|+
T Consensus 8 ~~~kV~ViGa--G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~----~~aDiVv 81 (326)
T 3vku_A 8 DHQKVILVGD--GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDA----KDADLVV 81 (326)
T ss_dssp CCCEEEEECC--SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGG----TTCSEEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHh----cCCCEEE
Confidence 4568998996 667776766655433334899999998766532222221 11112345554443332 2369988
Q ss_pred ecchhhhhccccCcchhhhH-HHHHHHHHHHHHcccCCcEEEEEc
Q 022698 194 SAAFFHTVGKEYGHRTVEAA-AERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.......-+-+...+.+... .-...+.+.+.+ ..|+++++++.
T Consensus 82 i~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~-~~p~a~ilvvt 125 (326)
T 3vku_A 82 ITAGAPQKPGETRLDLVNKNLKILKSIVDPIVD-SGFNGIFLVAA 125 (326)
T ss_dssp ECCCCC----------------CHHHHHHHHHT-TTCCSEEEECS
T ss_pred ECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh-cCCceEEEEcc
Confidence 76433211111111111100 011233444444 46899988765
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=85.63 E-value=6.5 Score=32.75 Aligned_cols=75 Identities=21% Similarity=0.092 Sum_probs=53.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+|.+++.++...+.. + .++.++.+|+.+.. + .
T Consensus 28 ~k~~lVTG-as~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 99 (272)
T 4dyv_A 28 KKIAIVTG-AGSGVGRAVAVALAGAG--YGVALAGRRLDALQETAAEI---G--DDALCVPTDVTDPDSVRALFTATVEK 99 (272)
T ss_dssp CCEEEETT-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH---T--SCCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHh---C--CCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 44566555 56788899999887764 69999999988776555443 2 34788999997632 1 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|...
T Consensus 100 ~g~iD~lVnnAg~ 112 (272)
T 4dyv_A 100 FGRVDVLFNNAGT 112 (272)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1479999998665
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.54 E-value=4.9 Score=33.34 Aligned_cols=80 Identities=19% Similarity=0.114 Sum_probs=53.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-EGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~-~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|++++.+++.++...+.... .....++.++.+|+.+.. +.
T Consensus 6 ~k~vlVTG-as~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (278)
T 1spx_A 6 EKVAIITG-SSNGIGRATAVLFAREG--AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 82 (278)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence 34666555 56788999998887764 6999999998877665554421 111245888999987632 11
Q ss_pred -CCcccEEEecchh
Q 022698 186 -DNYFDVVVSAAFF 198 (293)
Q Consensus 186 -~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|...
T Consensus 83 ~~g~id~lv~~Ag~ 96 (278)
T 1spx_A 83 KFGKLDILVNNAGA 96 (278)
T ss_dssp HHSCCCEEEECCC-
T ss_pred HcCCCCEEEECCCC
Confidence 1368999988654
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=85.53 E-value=13 Score=30.09 Aligned_cols=78 Identities=22% Similarity=0.156 Sum_probs=53.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeC-CHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDC-KKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDi-s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
+++|=-| |+|.++..+++.+.+.| .+|+.++. +++..+...+.....+ .++.++.+|+.+.. +.
T Consensus 5 k~~lVTG-as~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (246)
T 3osu_A 5 KSALVTG-ASRGIGRSIALQLAEEG--YNVAVNYAGSKEKAEAVVEEIKAKG--VDSFAIQANVADADEVKAMIKEVVSQ 79 (246)
T ss_dssp CEEEETT-CSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4566555 56788999998887764 68888887 5566665555555544 34888999987632 10
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 80 ~g~id~lv~nAg~~ 93 (246)
T 3osu_A 80 FGSLDVLVNNAGIT 93 (246)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 14789999986653
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.53 E-value=11 Score=31.08 Aligned_cols=79 Identities=22% Similarity=0.155 Sum_probs=55.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEE-eCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGL-DCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~v-Dis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+ +.+++..+...+.....+ .++.++.+|+.+.. ..
T Consensus 26 ~k~vlITG-as~gIG~a~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 100 (272)
T 4e3z_A 26 TPVVLVTG-GSRGIGAAVCRLAARQG--WRVGVNYAANREAADAVVAAITESG--GEAVAIPGDVGNAADIAAMFSAVDR 100 (272)
T ss_dssp SCEEEETT-TTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCC--CEEEEEcCCChhHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45676666 56788999999888764 577666 777777776666655544 45889999998632 00
Q ss_pred -CCcccEEEecchhh
Q 022698 186 -DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|..+.
T Consensus 101 ~~g~id~li~nAg~~ 115 (272)
T 4e3z_A 101 QFGRLDGLVNNAGIV 115 (272)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred hCCCCCEEEECCCCC
Confidence 14689999886543
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=85.51 E-value=7 Score=32.47 Aligned_cols=79 Identities=19% Similarity=0.056 Sum_probs=53.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHH-------HHHHHHHHHhcCCCCceEEEEcCCCCCC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRT-------TLSTLRTAKMEGVQEYVTAREGDVRSLP----- 183 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~-------l~~a~~~~~~~~~~~~v~~~~~d~~~~~----- 183 (293)
++++|=.|++ |.++..+++.+.+.| .+|+.++.++.. ++...+.....+ .++.++.+|+.+..
T Consensus 6 ~k~~lVTGas-~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~ 80 (274)
T 3e03_A 6 GKTLFITGAS-RGIGLAIALRAARDG--ANVAIAAKSAVANPKLPGTIHSAAAAVNAAG--GQGLALKCDIREEDQVRAA 80 (274)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTT--CEEEEEESCCSCCTTSCCCHHHHHHHHHHHT--SEEEEEECCTTCHHHHHHH
T ss_pred CcEEEEECCC-ChHHHHHHHHHHHCC--CEEEEEeccchhhhhhHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHH
Confidence 4577777754 678888888887764 699999988642 333333334333 45889999997632
Q ss_pred C-----CCCcccEEEecchhh
Q 022698 184 F-----GDNYFDVVVSAAFFH 199 (293)
Q Consensus 184 ~-----~~~~fD~Iv~~~~~~ 199 (293)
+ .-++.|++|.|....
T Consensus 81 ~~~~~~~~g~iD~lvnnAG~~ 101 (274)
T 3e03_A 81 VAATVDTFGGIDILVNNASAI 101 (274)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCcc
Confidence 0 014789999986543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 293 | ||||
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 4e-08 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 9e-08 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-06 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 6e-06 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 1e-05 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 3e-05 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 5e-05 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 8e-05 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 1e-04 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 2e-04 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 2e-04 | |
| d2p41a1 | 257 | c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)- | 2e-04 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 3e-04 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 4e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 7e-04 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 8e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.001 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 0.002 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 0.002 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 0.003 |
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 51.0 bits (121), Expect = 4e-08
Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 18/148 (12%)
Query: 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTL 160
D +V +V + +D GCG G L + + + G+D + L
Sbjct: 13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGET--LLAE 67
Query: 161 RTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVL 220
+ EGD + D Y + A H +L
Sbjct: 68 ARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHM-------------TTPETML 114
Query: 221 GEMVRVLKPGGVGVVWDLLHVPEYVRRL 248
+M+ +K GG + ++ + L
Sbjct: 115 QKMIHSVKKGGKIICFEPHWISNMASYL 142
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.9 bits (118), Expect = 9e-08
Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 9/164 (5%)
Query: 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLD--CKKRTTLSTLRTAKMEGVQEYVT 173
LD+ CG G+ + + S+ + K A + V E
Sbjct: 57 CHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 116
Query: 174 AREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVG 233
D +P GD + V+ F + G + +E L + +++PGG+
Sbjct: 117 WLTLDKD-VPAGDGFDAVICLGNSFAHLPDSKGDQ-----SEHRLALKNIASMVRPGGL- 169
Query: 234 VVWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP 277
+V D + + ++I +T + +S + K
Sbjct: 170 LVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKA 213
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 2e-06
Identities = 24/180 (13%), Positives = 47/180 (26%), Gaps = 28/180 (15%)
Query: 85 FFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLG 144
+ Y +D+ +M+ + + +D+G G G ++ VA
Sbjct: 124 YEPFSPEVY--GETSFDLVAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNC----K 176
Query: 145 RVVGLD--------CKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196
G++ + T GD S + + + V
Sbjct: 177 HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFV 236
Query: 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256
V+ + E +K GG V + R+ + DI
Sbjct: 237 NNF-----AFGPEVDHQLK------ERFANMKEGGRIVSSKPFAPLNF--RINSRNLSDI 283
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 43.8 bits (102), Expect = 6e-06
Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 18/128 (14%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
LD+GCG G +A + + + ++ +
Sbjct: 32 GRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT-- 89
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236
D +D ++S + + ++ M R KPGG ++
Sbjct: 90 ------LTFDGEYDFILSTVVMMFLEAQ----------TIPGLIANMQRCTKPGGYNLIV 133
Query: 237 DLLHVPEY 244
+ P++
Sbjct: 134 AAMDTPDF 141
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 42.9 bits (100), Expect = 1e-05
Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 23/137 (16%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
A+D+GCG G + +A + + RV +D +T + G+ + VT E
Sbjct: 35 DVAVDVGCGTGGVTLELAGRVR------RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME 88
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236
GD D+ V + +L + LKPGG +V
Sbjct: 89 GDAPEALCKIPDIDIAVVGGSGGEL---------------QEILRIIKDKLKPGGRIIVT 133
Query: 237 DLL--HVPEYVRRLQEL 251
+L E + L++L
Sbjct: 134 AILLETKFEAMECLRDL 150
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.2 bits (98), Expect = 3e-05
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 15/142 (10%)
Query: 92 FYSAVPLHYDMA---------QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGS 142
Y +H +M + + D K LD+GCG GIL A
Sbjct: 6 SYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG----- 60
Query: 143 LGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVG 202
+ V ++ G + +T G + + D+++S + +
Sbjct: 61 -AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLL 119
Query: 203 KEYGHRTVEAAAERMRVLGEMV 224
E TV A + V G ++
Sbjct: 120 YESMMDTVLYARDHYLVEGGLI 141
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.0 bits (98), Expect = 5e-05
Identities = 23/198 (11%), Positives = 58/198 (29%), Gaps = 32/198 (16%)
Query: 97 PLHYDMAQRMVGSVNDWSTVK---TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDC-K 152
L + + +K T +D+G G G + A + G +
Sbjct: 199 ELLPNFLSDVY----QQCQLKKGDTFMDLGSGVGNCVVQAALECGC----ALSFGCEIMD 250
Query: 153 KRTTLSTLRTAKMEGVQEYVTAREG----DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHR 208
+ L+ L+ +++ + R ++ +N ++ V
Sbjct: 251 DASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFD- 309
Query: 209 TVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----------HVPEYVRRLQELKMEDIRV 258
+ + + ++++ K G + L +V RL+ + +
Sbjct: 310 -----EDLNKKVEKILQTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKED 364
Query: 259 SERVTAFMVSSHIVSFRK 276
S T +I + +
Sbjct: 365 SVSWTHSGGEYYISTVME 382
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 8e-05
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 15/135 (11%)
Query: 93 YSAVPLHYDMA---------QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSL 143
Y +H +M + + K LD+GCG GIL A
Sbjct: 4 YGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG------ 57
Query: 144 GRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGK 203
+ V + + ++ +++ +T +G + + DV++S + +
Sbjct: 58 AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLF 117
Query: 204 EYGHRTVEAAAERMR 218
E +V A +
Sbjct: 118 ESMLDSVLYAKNKYL 132
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 15/116 (12%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
K LD+G G GIL A + +V+G++C + + + VT +
Sbjct: 35 KVVLDVGSGTGILCMFAAKAGAR-----KVIGIECSSISDYAVKIVKA-NKLDHVVTIIK 88
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
G V + D+++S + + E + VL + L P G+
Sbjct: 89 GKVEEVELPVEKVDIIISEWMGYCLFYE---------SMLNTVLHARDKWLAPDGL 135
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 13/139 (9%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
+ LD+GCG+G L G G+D + + A+ + V R
Sbjct: 26 DSVLDLGCGKGGDLLKYERAGI-----GEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 80
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236
D V+S+ F Y T E+ R + R L+PGG +
Sbjct: 81 QDSYGRHMDLGKEFDVISSQFSF----HYAFSTSESLDIAQR---NIARHLRPGGY-FIM 132
Query: 237 DLLHVPEYVRRLQELKMED 255
+ + R ++ +M +
Sbjct: 133 TVPSRDVILERYKQGRMSN 151
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 39.5 bits (91), Expect = 2e-04
Identities = 36/179 (20%), Positives = 53/179 (29%), Gaps = 34/179 (18%)
Query: 85 FFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTA--LDIGCGRGILLNAVATQFKKTGS 142
A F A + + +V + + K LDIGCG G +A A +
Sbjct: 53 MMQARRAFLDA-GHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPE--- 108
Query: 143 LGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVG 202
GLD K VT LPF D D ++
Sbjct: 109 -ITTFGLDVSKV------AIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC--- 158
Query: 203 KEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSER 261
E+ RV+KPG G V P ++ L+ L ++ +
Sbjct: 159 ----------------KAEELARVVKPG--GWVITATPGPRHLMELKGLIYNEVHLHAP 199
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Score = 39.5 bits (92), Expect = 2e-04
Identities = 30/159 (18%), Positives = 49/159 (30%), Gaps = 24/159 (15%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG---VQEYVTA 174
+D+GCGRG G G + V
Sbjct: 69 KVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGP---------GHEEPIPMSTYGWNLVRL 119
Query: 175 REG-DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER-MRVLGEMVRVLKPGGV 232
+ G DV +P D ++ +G+ + TVE A R +RVL + L
Sbjct: 120 QSGVDVFFIP--PERCDTLLC-----DIGESSPNPTVE--AGRTLRVLNLVENWLSNNTQ 170
Query: 233 GVVWDLLHV-PEYVRRLQELKMEDIRVSERVTAFMVSSH 270
V L + +++ L+ + R S+H
Sbjct: 171 FCVKVLNPYMSSVIEKMEALQRKHGGALVRNPLSRNSTH 209
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 3e-04
Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 38/161 (23%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKK----------RTTLSTLRTAKME 166
T L+ G G G + ++ K GS GRV+ + +K + + + + +E
Sbjct: 100 DTVLEAGSGSGGMSLFLS---KAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE 156
Query: 167 GVQEYVTAREGDVRSLPFG--DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV 224
+ V D+ FD A + L
Sbjct: 157 EWPDNVDFIHKDISGATEDIKSLTFD-----AVALDM------------LNPHVTLPVFY 199
Query: 225 RVLKPGGVGVVWDLLHVPEYVR-----RLQELKMEDIRVSE 260
LK GGV V+ ++++ + + R EL + ++SE
Sbjct: 200 PHLKHGGVCAVY-VVNITQVIELLDGIRTCELALSCEKISE 239
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 4e-04
Identities = 12/126 (9%), Positives = 26/126 (20%), Gaps = 22/126 (17%)
Query: 120 LDIGCGRGILLNAVATQFKK--TGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177
L IG G G + + ++ + G ++ E V
Sbjct: 45 LSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWH 104
Query: 178 --------DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKP 229
+D + + V + L +L
Sbjct: 105 KETSSEYQSRMLEKKELQKWDFIHMIQMLYYV------------KDIPATLKFFHSLLGT 152
Query: 230 GGVGVV 235
++
Sbjct: 153 NAKMLI 158
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (87), Expect = 7e-04
Identities = 24/124 (19%), Positives = 36/124 (29%), Gaps = 18/124 (14%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
LD+G G G +L A G+D T R A+ GV E V
Sbjct: 35 TRILDLGSGSGEMLCTWARDHG-----ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH 89
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236
D + A + A + + LKPGG+ ++
Sbjct: 90 NDAAGYVANEKCDVAACVGATWI-------------AGGFAGAEELLAQSLKPGGIMLIG 136
Query: 237 DLLH 240
+
Sbjct: 137 EPYW 140
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 37.6 bits (86), Expect = 8e-04
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 19/118 (16%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179
LDIG G G A + +G+D K A+ +GV+ +
Sbjct: 21 LDIGAGAGHTALAFSPYV------QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE 74
Query: 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237
PF D+ FD++ H ++ + + E+ RVLK G ++ D
Sbjct: 75 SL-PFPDDSFDIITCRYAAHHF------------SDVRKAVREVARVLKQDGRFLLVD 119
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 37.7 bits (87), Expect = 0.001
Identities = 17/145 (11%), Positives = 37/145 (25%), Gaps = 23/145 (15%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177
L++G G G + + + G + ++ + + V
Sbjct: 88 DILEVGVGSGNMSSYIL---YALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS 144
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237
D+ Y V+ + ++ ++KPG V +
Sbjct: 145 DIADFISDQMYDAVIADIPDPW------------------NHVQKIASMMKPGSVATFYL 186
Query: 238 --LLHVPEYVRRLQELKMEDIRVSE 260
+ V L M + E
Sbjct: 187 PNFDQSEKTVLSLSASGMHHLETVE 211
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 37.1 bits (85), Expect = 0.002
Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 25/155 (16%)
Query: 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTT 156
P + RM V +D+ G G L +A K +V+ ++ T
Sbjct: 92 PANVKERVRMAKVAKPDELV---VDMFAGIGHLSLPIAVYGKA-----KVIAIEKDPYTF 143
Query: 157 LSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER 216
+ + V++ ++A D R G+N D ++
Sbjct: 144 KFLVENIHLNKVEDRMSAYNMDNRDF-PGENIADRILMGYVVR--------------THE 188
Query: 217 MRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQEL 251
+ + + + K G + + + R E
Sbjct: 189 F--IPKALSIAKDGAIIHYHNTVPEKLMPREPFET 221
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.002
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 158 STLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERM 217
LR + V + + + D +VSA V + A
Sbjct: 128 RQLRARVKRVLPIDVH-QPQPLGAGSPAPLPADALVSAFCLEAVSPDL--------ASFQ 178
Query: 218 RVLGEMVRVLKPGGVGVVWDLL 239
R L + +L+PGG ++ L
Sbjct: 179 RALDHITTLLRPGGHLLLIGAL 200
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 36.0 bits (82), Expect = 0.003
Identities = 24/167 (14%), Positives = 41/167 (24%), Gaps = 26/167 (15%)
Query: 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTT 156
H + LD+G G G+L A K +G+D
Sbjct: 102 GHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGK------ALGVDIDPMVL 155
Query: 157 LSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER 216
AK GV EG + + + +V +
Sbjct: 156 PQAEANAKRNGV--RPRFLEGSLEAALPFGPFDLLVANLYAEL----------------H 197
Query: 217 MRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELKMEDIRVSER 261
+ L PGG ++ +L P + + +
Sbjct: 198 AALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE 244
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 293 | |||
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.97 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.91 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.89 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.88 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.88 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.87 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.84 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.83 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.82 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.82 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.82 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.82 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.81 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.8 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.8 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.79 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.79 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.78 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.78 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.77 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.77 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.76 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.76 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.76 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.76 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.74 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.74 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.74 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.74 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.72 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.72 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.71 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.68 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.68 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.67 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.67 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.66 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.66 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.66 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.64 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.64 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.63 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.63 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.61 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.59 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.59 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.57 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.56 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.56 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.55 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.55 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.54 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.52 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.52 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.51 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.51 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.5 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.5 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.48 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.48 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.45 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.41 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.4 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.39 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.38 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.37 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.36 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.33 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.32 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.32 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.3 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.28 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.28 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.21 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.16 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.1 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.07 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.99 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.98 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.97 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.93 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.93 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.88 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.86 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.84 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.83 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.82 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.82 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.66 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.66 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.65 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.64 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.63 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.6 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.55 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.53 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.5 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.3 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 98.29 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.01 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.7 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.42 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.94 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.77 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.74 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.69 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.69 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.68 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.61 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.56 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.54 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.41 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.39 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.38 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 96.36 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.3 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.26 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 96.19 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.15 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.12 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 96.05 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.02 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.82 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 95.75 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.72 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.7 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.4 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.4 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.22 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.01 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.99 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 94.71 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.67 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.64 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.58 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.49 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 94.45 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.45 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 93.64 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.37 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 93.32 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.27 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 93.18 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 93.13 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.12 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 93.02 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 92.99 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.94 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.93 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 92.65 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 92.59 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 92.43 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 92.42 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 92.24 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 92.09 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 91.95 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 91.83 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 91.78 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 91.76 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.72 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 91.59 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 91.56 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 91.51 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.25 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 91.2 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 91.13 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 91.12 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 91.0 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 90.93 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 90.92 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 90.64 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 90.63 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 90.46 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 90.3 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 89.98 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 89.83 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 89.68 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 89.64 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 89.2 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.19 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 88.9 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 88.81 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 88.78 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 88.49 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 87.65 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 87.56 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 87.46 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 87.3 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 87.23 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 87.15 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 86.98 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 86.91 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 86.42 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 85.75 | |
| d1dcfa_ | 134 | Receiver domain of the ethylene receptor {Thale cr | 85.51 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 85.45 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 85.27 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 84.8 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 82.93 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 82.71 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 82.69 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 82.58 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 82.53 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 82.49 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 82.4 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 82.03 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 81.83 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 81.79 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 81.54 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 81.51 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 81.42 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 80.98 |
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2e-29 Score=215.11 Aligned_cols=234 Identities=12% Similarity=0.067 Sum_probs=191.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCccc-----
Q 022698 24 EQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPL----- 98 (293)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~----- 98 (293)
+..+.-+.+++.+.+....+.+++....+++....+.+...+.|+..++| ++|+.+...||+..+.+
T Consensus 17 ~~p~~da~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~g~P--------lqYI~G~~~F~~~~~~v~~~Vl 88 (274)
T d2b3ta1 17 ESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRDGEP--------IAHLTGVREFWSLPLFVSPATL 88 (274)
T ss_dssp SCHHHHHHHHHHHHHTCCHHHHHHTTTCBCCHHHHHHHHHHHHHHHTTCC--------HHHHSCEEEETTEEEECCTTSC
T ss_pred CCHHHHHHHHHHHHhCcCHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCcC--------hhhhcCcEEEeeeEEEEecccc
Confidence 44455577777777777777888888889999888999999999999999 99999999999876543
Q ss_pred -----hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceE
Q 022698 99 -----HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVT 173 (293)
Q Consensus 99 -----~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~ 173 (293)
++.+++..+.... ..+.+|||+|||+|++++.++...| ..+|+++|+|+.+++.|++|++.+++ .+++
T Consensus 89 IPRpeTE~lv~~~l~~~~--~~~~~vlDlGtGSG~I~i~la~~~p----~~~v~avDis~~Al~~A~~Na~~~~~-~~v~ 161 (274)
T d2b3ta1 89 IPRPDTECLVEQALARLP--EQPCRILDLGTGTGAIALALASERP----DCEIIAVDRMPDAVSLAQRNAQHLAI-KNIH 161 (274)
T ss_dssp CCCTTHHHHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCT----TSEEEEECSSHHHHHHHHHHHHHHTC-CSEE
T ss_pred ccccchhhhhhhHhhhhc--ccccceeeeehhhhHHHHHHHhhCC----cceeeeccchhHHHhHHHHHHHHhCc-ccce
Confidence 3567777777654 3457899999999999999999887 57999999999999999999999998 4699
Q ss_pred EEEcCCCCCCCCCCcccEEEecchhhhhc----------cccCcchhh---hHHHHHHHHHHHHHcccCCcEEEE-EcCC
Q 022698 174 AREGDVRSLPFGDNYFDVVVSAAFFHTVG----------KEYGHRTVE---AAAERMRVLGEMVRVLKPGGVGVV-WDLL 239 (293)
Q Consensus 174 ~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~----------~~~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~-~~~~ 239 (293)
++++|+.+ +.++++||+|+|||||.... .+|..+.+. .......+++.+.++|+|||.+++ ++..
T Consensus 162 ~~~~d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~ 240 (274)
T d2b3ta1 162 ILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ 240 (274)
T ss_dssp EECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS
T ss_pred eeeccccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECch
Confidence 99999987 45567999999999986432 233333222 223456788888899999999988 6777
Q ss_pred CchHHHHHHHHcCCcceEEeeeeccceecceeeeeec
Q 022698 240 HVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 240 ~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
+.+.+.+++++.||..+++.+|+.+.+ |++.+|+
T Consensus 241 q~~~v~~~l~~~gf~~i~~~kDl~g~~---R~v~~r~ 274 (274)
T d2b3ta1 241 QGEAVRQAFILAGYHDVETCRDYGDNE---RVTLGRY 274 (274)
T ss_dssp CHHHHHHHHHHTTCTTCCEEECTTSSE---EEEEEEC
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCCCc---eEEEEeC
Confidence 788999999999999999999999988 9988763
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=1.2e-24 Score=184.90 Aligned_cols=228 Identities=14% Similarity=0.132 Sum_probs=168.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCccch------
Q 022698 26 WQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLH------ 99 (293)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~------ 99 (293)
+.--+.+++.+.+......+++. ..+++......+..++.|+..++| ++|+.+..+||+..+.+.
T Consensus 21 ~~lda~lll~~~l~~~~~~l~~~-~~~l~~~~~~~~~~~i~rR~~~~P--------l~YI~g~~~F~~~~f~v~~~vlIP 91 (271)
T d1nv8a_ 21 SVLEVLLIVSRVLGIRKEDLFLK-DLGVSPTEEKRILELVEKRASGYP--------LHYILGEKEFMGLSFLVEEGVFVP 91 (271)
T ss_dssp HHHHHHHHHHHHHTCCGGGGCCS-SCCCCHHHHHHHHHHHHHHHTTCC--------HHHHHTEEEETTEEEECCTTSCCC
T ss_pred HHHHHHHHHHHHHCcCHHHHhhC-CCCCCHHHHHHHHHHHHHhhCCCC--------hhhhcCcEEEeeeEEEEecCccCc
Confidence 44446666666655445555553 456777777888899999999999 999999999998775543
Q ss_pred ----HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q 022698 100 ----YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 100 ----~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~ 175 (293)
+.+++.+++.... .+..+++|+|||+|+++..+++ .+ .++|+++|+|+.+++.|++|++.+++.+++.+.
T Consensus 92 RpeTE~lv~~~~~~~~~-~~~~~vld~g~GsG~i~~~la~-~~----~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~ 165 (271)
T d1nv8a_ 92 RPETEELVELALELIRK-YGIKTVADIGTGSGAIGVSVAK-FS----DAIVFATDVSSKAVEIARKNAERHGVSDRFFVR 165 (271)
T ss_dssp CTTHHHHHHHHHHHHHH-HTCCEEEEESCTTSHHHHHHHH-HS----SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred hhhhhhhhhhhhhhhcc-ccccEEEEeeeeeehhhhhhhh-cc----cceeeechhhhhHHHHHHHHHHHcCCCceeEEe
Confidence 5577777765543 3346899999999999999874 45 579999999999999999999999998889999
Q ss_pred EcCCCCCC-CCCCcccEEEecchhhhhcc--------ccCcchhhhHHHHHHHHHH-HHHcccCCcEEEE-EcCCCchHH
Q 022698 176 EGDVRSLP-FGDNYFDVVVSAAFFHTVGK--------EYGHRTVEAAAERMRVLGE-MVRVLKPGGVGVV-WDLLHVPEY 244 (293)
Q Consensus 176 ~~d~~~~~-~~~~~fD~Iv~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~-~~~~~~~~~ 244 (293)
..|+.+.. ...++||+|||||||..... ||..+.+.. .|...++++ +.++|+|||++++ ++..+.+.+
T Consensus 166 ~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg-~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v 244 (271)
T d1nv8a_ 166 KGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGG-EDGLDFYREFFGRYDTSGKIVLMEIGEDQVEEL 244 (271)
T ss_dssp ESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCT-TTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHH
T ss_pred ecccccccccccCcccEEEEcccccCcccccceeeeeccccccccc-cchHHHHHHHHHHhcCCCCEEEEEECHHHHHHH
Confidence 99987732 22378999999999964331 111111111 111223333 4578999999888 677777888
Q ss_pred HHHHHHcCCcceEEeeeeccceecceeeeeecC
Q 022698 245 VRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 245 ~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
.+++.+.|| .+|+.+.+ |++.++|.
T Consensus 245 ~~l~~~~g~-----~kDl~g~~---R~~~~~k~ 269 (271)
T d1nv8a_ 245 KKIVSDTVF-----LKDSAGKY---RFLLLNRR 269 (271)
T ss_dssp TTTSTTCEE-----EECTTSSE---EEEEEECC
T ss_pred HHHHHhCCE-----EeccCCCc---EEEEEEEc
Confidence 777766665 68999988 99999875
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.89 E-value=9.1e-23 Score=170.30 Aligned_cols=135 Identities=23% Similarity=0.316 Sum_probs=114.3
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+++.+ .++++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|++++...+. ++++|+++|+.++++
T Consensus 6 ~ll~~~-~l~~~~rVLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~ 77 (231)
T d1vl5a_ 6 KLMQIA-ALKGNEEVLDVATGGGHVANAFAPF------VKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPF 77 (231)
T ss_dssp HHHHHH-TCCSCCEEEEETCTTCHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCS
T ss_pred HHHHhc-CCCCcCEEEEecccCcHHHHHHHHh------CCEEEEEECCHHHHhhhhhccccccc-ccccccccccccccc
Confidence 455554 3678899999999999999888765 35999999999999999999988875 569999999999998
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------------------
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------- 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------- 239 (293)
++++||+|+|..+++|++ ++..+++++.++|||||++++.+..
T Consensus 78 ~~~~fD~v~~~~~l~~~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (231)
T d1vl5a_ 78 TDERFHIVTCRIAAHHFP------------NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRA 145 (231)
T ss_dssp CTTCEEEEEEESCGGGCS------------CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCC
T ss_pred cccccccccccccccccC------------CHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccC
Confidence 899999999999999998 8999999999999999999985321
Q ss_pred -CchHHHHHHHHcCCcceEEe
Q 022698 240 -HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 240 -~~~~~~~~l~~~gf~~~~~~ 259 (293)
...++.+.++++||+.++++
T Consensus 146 ~~~~~~~~~l~~aGf~~~~~~ 166 (231)
T d1vl5a_ 146 WKKSDWLKMLEEAGFELEELH 166 (231)
T ss_dssp CBHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEEEE
Confidence 12468888999999877654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.88 E-value=5.1e-22 Score=171.01 Aligned_cols=133 Identities=23% Similarity=0.295 Sum_probs=117.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
.+.++.+|||||||+|..+..++++. +++|+|+|+|+.+++.|+++....++.+++++.++|+.++|+++++||+
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~ 138 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKF-----GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDF 138 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEE
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccC-----CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccch
Confidence 46788999999999999999998764 3699999999999999999999999988999999999999988899999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-----------------------CCchHHHHHH
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-----------------------LHVPEYVRRL 248 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-----------------------~~~~~~~~~l 248 (293)
|+|..+++|++ ++..+++++.++|||||++++.+. ...+++.+++
T Consensus 139 V~~~~~l~h~~------------d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l 206 (282)
T d2o57a1 139 IWSQDAFLHSP------------DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLA 206 (282)
T ss_dssp EEEESCGGGCS------------CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHH
T ss_pred hhccchhhhcc------------CHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHH
Confidence 99999999998 888999999999999999988532 1235678889
Q ss_pred HHcCCcceEEeee
Q 022698 249 QELKMEDIRVSER 261 (293)
Q Consensus 249 ~~~gf~~~~~~~~ 261 (293)
+++||+.+.+...
T Consensus 207 ~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 207 KECGLVTLRTFSR 219 (282)
T ss_dssp HHTTEEEEEEEEC
T ss_pred HHcCCceEEEEEC
Confidence 9999998877643
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=3.4e-22 Score=167.46 Aligned_cols=137 Identities=24% Similarity=0.356 Sum_probs=114.8
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
.+.+++.+ +++++.+|||||||+|.++..+++. ..+|+|+|+|+.|++.|++++..++. +++.++++|+.++
T Consensus 5 ~~~l~~~~-~~~~~~rILDiGcGtG~~~~~la~~------~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~ 76 (234)
T d1xxla_ 5 LGLMIKTA-ECRAEHRVLDIGAGAGHTALAFSPY------VQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESL 76 (234)
T ss_dssp HHHHHHHH-TCCTTCEEEEESCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBC
T ss_pred HHHHHHHh-CCCCCCEEEEeCCcCcHHHHHHHHh------CCeEEEEeCChhhhhhhhhhhccccc-ccccccccccccc
Confidence 34455555 4788999999999999999988765 34899999999999999999998876 4699999999999
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-----------------------
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----------------------- 239 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------------- 239 (293)
++++++||+|+|+.++++++ ++..+++++.++|||||.+++.+..
T Consensus 77 ~~~~~~fD~v~~~~~l~~~~------------d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (234)
T d1xxla_ 77 PFPDDSFDIITCRYAAHHFS------------DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHV 144 (234)
T ss_dssp CSCTTCEEEEEEESCGGGCS------------CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCC
T ss_pred cccccccceeeeeceeeccc------------CHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCccc
Confidence 98899999999999999998 8999999999999999999885321
Q ss_pred ---CchHHHHHHHHcCCcceEEe
Q 022698 240 ---HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 240 ---~~~~~~~~l~~~gf~~~~~~ 259 (293)
...++..++.+.||....+.
T Consensus 145 ~~~~~~~~~~~~~~~gf~~~~~~ 167 (234)
T d1xxla_ 145 RESSLSEWQAMFSANQLAYQDIQ 167 (234)
T ss_dssp CCCBHHHHHHHHHHTTEEEEEEE
T ss_pred ccCCHHHHHHHHHHCCCceeEEE
Confidence 12346677888898765544
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=7.1e-22 Score=166.62 Aligned_cols=144 Identities=21% Similarity=0.250 Sum_probs=123.6
Q ss_pred cchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
+..++..+.+.+.+. +.++.+|||||||+|..+..+++.. +++|+|+|+|+.+++.+++++...++.++++|.+
T Consensus 16 p~~~~~~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~-----~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~ 89 (245)
T d1nkva_ 16 PFTEEKYATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-----GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH 89 (245)
T ss_dssp SCCHHHHHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred CCCHHHHHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhc-----CCEEEEEecccchhhHHHHHHHHhhccccchhhh
Confidence 456667777776664 7888999999999999999888764 3699999999999999999999999988999999
Q ss_pred cCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------
Q 022698 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------ 238 (293)
Q Consensus 177 ~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------ 238 (293)
+|+.++ ..+++||+|+|...+++++ ++..++++++++|||||++++.+.
T Consensus 90 ~d~~~~-~~~~~fD~v~~~~~~~~~~------------d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~ 156 (245)
T d1nkva_ 90 NDAAGY-VANEKCDVAACVGATWIAG------------GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVS 156 (245)
T ss_dssp SCCTTC-CCSSCEEEEEEESCGGGTS------------SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCS
T ss_pred hHHhhc-cccCceeEEEEEehhhccC------------CHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccC
Confidence 999987 4578999999999999998 889999999999999999998432
Q ss_pred -----CCchHHHHHHHHcCCcceEEe
Q 022698 239 -----LHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 239 -----~~~~~~~~~l~~~gf~~~~~~ 259 (293)
...+++...+.++||+.+...
T Consensus 157 ~~~~~~~~~~~~~~~~~aG~~~v~~~ 182 (245)
T d1nkva_ 157 STSDFLTLPGLVGAFDDLGYDVVEMV 182 (245)
T ss_dssp CGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred CCcccCCHHHHHHHHHHcCCEEEEEE
Confidence 234578899999999987654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.84 E-value=3.8e-20 Score=153.87 Aligned_cols=137 Identities=15% Similarity=0.215 Sum_probs=112.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++.... ++.+|+|+|+|+.|++.|+++++..+...++.+...|+.+.+ ..++|+|+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~--~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~ 113 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQ--PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVI 113 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCC--SSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcC--CCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeE
Confidence 56789999999999999999876532 257999999999999999999888777777899999887765 45799999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------------------------
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------------------------- 239 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------------------- 239 (293)
|+..+++++ .+++..++++++++|||||.+++.+..
T Consensus 114 ~~~~l~~~~----------~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (225)
T d1im8a_ 114 LNFTLQFLP----------PEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRT 183 (225)
T ss_dssp EESCGGGSC----------GGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHH
T ss_pred EeeeccccC----------hhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999886 237889999999999999999985421
Q ss_pred ---------CchHHHHHHHHcCCcceEEeeeecc
Q 022698 240 ---------HVPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 240 ---------~~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
..+++..+|+++||+.++++-....
T Consensus 184 ~~~~~~~~~s~~~~~~~L~~aGF~~v~~~~~~~~ 217 (225)
T d1im8a_ 184 ALENVMRTDSIETHKVRLKNVGFSQVELWFQCFN 217 (225)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHTCSEEEEEEEETT
T ss_pred HhhcccCCCCHHHHHHHHHHcCCCceEEeeeeCc
Confidence 2246778899999999988644433
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.5e-20 Score=156.13 Aligned_cols=132 Identities=14% Similarity=0.118 Sum_probs=110.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..+..+|||||||+|..+..++... ..+|+|+|+|+.|++.|++++...+. .+++|.++|+.++++++++||+|
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I 131 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPL-----FREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVI 131 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTT-----CSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEE
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhc-----CCEEEEeecCHHHhhccccccccccc-ccccccccccccccccccccccc
Confidence 3556799999999999988776443 24899999999999999999887664 45899999999988778899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------CchHHHHHHHHcCCcce
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----------------HVPEYVRRLQELKMEDI 256 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------~~~~~~~~l~~~gf~~~ 256 (293)
++..+++|++ .++...++++++++|+|||.+++.+.. ..+++.+++.++||+.+
T Consensus 132 ~~~~~l~h~~----------~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 132 WIQWVIGHLT----------DQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp EEESCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred ccccccccch----------hhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEE
Confidence 9999999998 224568999999999999999985321 24578899999999988
Q ss_pred EEee
Q 022698 257 RVSE 260 (293)
Q Consensus 257 ~~~~ 260 (293)
+...
T Consensus 202 ~~~~ 205 (222)
T d2ex4a1 202 AEER 205 (222)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=1.6e-20 Score=154.09 Aligned_cols=119 Identities=22% Similarity=0.335 Sum_probs=100.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
+..+|||||||+|.++..+. +++|+|+|+.+++.++++ ++.+.++|+.++++++++||+|+|
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~----------~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~ 97 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK----------IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALM 97 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT----------CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEE
T ss_pred CCCeEEEECCCCcccccccc----------eEEEEeCChhhccccccc--------cccccccccccccccccccccccc
Confidence 45689999999999875442 578999999999988764 278999999999888899999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------CCchHHHHHHH
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-------------------------LHVPEYVRRLQ 249 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------------~~~~~~~~~l~ 249 (293)
+.+++|++ ++..+++++.++|+|||.+++... ....++.++|+
T Consensus 98 ~~~l~h~~------------d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~ 165 (208)
T d1vlma_ 98 VTTICFVD------------DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMR 165 (208)
T ss_dssp ESCGGGSS------------CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHH
T ss_pred cccccccc------------ccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHH
Confidence 99999998 889999999999999999988432 12457889999
Q ss_pred HcCCcceEEeeeec
Q 022698 250 ELKMEDIRVSERVT 263 (293)
Q Consensus 250 ~~gf~~~~~~~~~~ 263 (293)
++||+.+++.....
T Consensus 166 ~~Gf~~i~v~~~~~ 179 (208)
T d1vlma_ 166 KAGFEEFKVVQTLF 179 (208)
T ss_dssp HTTCEEEEEEEECC
T ss_pred HcCCeEEEEEEEec
Confidence 99999998876443
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.82 E-value=4.5e-20 Score=158.59 Aligned_cols=120 Identities=18% Similarity=0.296 Sum_probs=103.2
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
++..+.++..+..+.++.+|||+|||+|..+..+++..+. +.+|+|+|+|+.+++.|+++....+. +++|.+.|+
T Consensus 12 ~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~---~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~ 86 (281)
T d2gh1a1 12 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPE---GSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDA 86 (281)
T ss_dssp HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCT---TCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCT
T ss_pred HHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCC---CCEEEEEecchhHhhhhhcccccccc--ccccccccc
Confidence 4456667776655667789999999999999988876653 46999999999999999999887764 489999999
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.+++++ ++||+|+|+.+++|++ ++..+++++.++|||||.+++.+
T Consensus 87 ~~~~~~-~~fD~v~~~~~l~~~~------------d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 87 TEIELN-DKYDIAICHAFLLHMT------------TPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp TTCCCS-SCEEEEEEESCGGGCS------------SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccc-CCceEEEEehhhhcCC------------CHHHHHHHHHHHcCcCcEEEEEE
Confidence 988764 5799999999999998 88999999999999999998855
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=6.2e-20 Score=152.00 Aligned_cols=107 Identities=28% Similarity=0.306 Sum_probs=93.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.+..+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+. ++.++..|+.++++++++||+|+
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~------~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~~~~~fD~I~ 107 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY------GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSFEDKTFDYVI 107 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCEEEEECCCcchhhhhHhhh------hcccccccccccchhhhhhhhccccc--cccccccccccccccCcCceEEE
Confidence 46779999999999999988864 46999999999999999999887764 37889999999998889999999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
|+.++++++ ..++..+++++.++|||||.+++...
T Consensus 108 ~~~~l~~~~----------~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 108 FIDSIVHFE----------PLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp EESCGGGCC----------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EecchhhCC----------hhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 999999986 34778899999999999999987543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.82 E-value=1.1e-19 Score=147.69 Aligned_cols=151 Identities=15% Similarity=0.204 Sum_probs=113.4
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEEcCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE-YVTAREGDVRS 181 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~-~v~~~~~d~~~ 181 (293)
.+.+++.+. ..++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.+++|++.+++.. ++++..+|+.+
T Consensus 41 t~lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~------~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~ 113 (194)
T d1dusa_ 41 TKILVENVV-VDKDDDILDLGCGYGVIGIALADEV------KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE 113 (194)
T ss_dssp HHHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGS------SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT
T ss_pred HHHHHHhCC-cCCCCeEEEEeecCChhHHHHHhhc------cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh
Confidence 445666664 4678899999999999999887653 489999999999999999999888753 68999999987
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE-cCCCchHHHHHHHHcCCcceEEee
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW-DLLHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
+.++++||+|++++|+++.. +....+++++.++|+|||.++++ ......+......+..|..++...
T Consensus 114 -~~~~~~fD~Ii~~~p~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~ 181 (194)
T d1dusa_ 114 -NVKDRKYNKIITNPPIRAGK-----------EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVT 181 (194)
T ss_dssp -TCTTSCEEEEEECCCSTTCH-----------HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEE
T ss_pred -hhccCCceEEEEcccEEecc-----------hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEE
Confidence 45678999999999987654 13467899999999999998774 333333333333344466666665
Q ss_pred eeccceecceeeeeec
Q 022698 261 RVTAFMVSSHIVSFRK 276 (293)
Q Consensus 261 ~~~~~~~~~~~~~~~~ 276 (293)
.-.+| +++.++|
T Consensus 182 ~~~gf----~vl~a~K 193 (194)
T d1dusa_ 182 IKGGY----RVLKSKK 193 (194)
T ss_dssp EETTE----EEEEEEC
T ss_pred ecCCc----EEEEEEE
Confidence 55555 3666654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.81 E-value=2.8e-19 Score=144.30 Aligned_cols=136 Identities=23% Similarity=0.276 Sum_probs=111.6
Q ss_pred cchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
+..+++...++..+. ..++.+|||+|||+|.+++.+++. ..+|+++|+|+.+++.|++|++.+++.+++++++
T Consensus 16 ~t~~eir~~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~------~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~ 88 (186)
T d1l3ia_ 16 PTAMEVRCLIMCLAE-PGKNDVAVDVGCGTGGVTLELAGR------VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME 88 (186)
T ss_dssp CCCHHHHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE
T ss_pred CChHHHHHHHHHhcC-CCCCCEEEEEECCeEccccccccc------ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEE
Confidence 355667677777764 678899999999999999988754 3599999999999999999999999988999999
Q ss_pred cCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCc
Q 022698 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKME 254 (293)
Q Consensus 177 ~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~ 254 (293)
+|+.+......+||.|+++.+.++. ..+++.+.+.|||||++++.... ......+.+++.||.
T Consensus 89 gda~~~~~~~~~~D~v~~~~~~~~~---------------~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~ 153 (186)
T d1l3ia_ 89 GDAPEALCKIPDIDIAVVGGSGGEL---------------QEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFD 153 (186)
T ss_dssp SCHHHHHTTSCCEEEEEESCCTTCH---------------HHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCC
T ss_pred CchhhcccccCCcCEEEEeCccccc---------------hHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCC
Confidence 9988766666789999998766543 46889999999999999886543 234566778888875
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.80 E-value=1e-18 Score=147.70 Aligned_cols=139 Identities=19% Similarity=0.243 Sum_probs=114.7
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+++.+ .+.+..+|||||||+|..+..+++..| +.+++++|+ +++++.++++....+..++++++.+|+.+. .
T Consensus 71 ~~~~~~-d~~~~~~VLDvGcG~G~~~~~la~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~ 143 (253)
T d1tw3a2 71 APAAAY-DWTNVRHVLDVGGGKGGFAAAIARRAP----HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-L 143 (253)
T ss_dssp HHHHHS-CCTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-C
T ss_pred HHHhhc-CCccCCEEEEeCCCCCHHHHHHHHhcc----eeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-c
Confidence 444444 356678999999999999999998877 569999998 678999999999998888999999998763 2
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------------------
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------- 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------- 239 (293)
..+||+|+++.++|+++ +++...++++++++|||||++++.+..
T Consensus 144 -~~~~D~v~~~~vlh~~~----------d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~ 212 (253)
T d1tw3a2 144 -PRKADAIILSFVLLNWP----------DHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGA 212 (253)
T ss_dssp -SSCEEEEEEESCGGGSC----------HHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCC
T ss_pred -ccchhheeeccccccCC----------chhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCc
Confidence 35699999999999987 335568999999999999999986532
Q ss_pred --CchHHHHHHHHcCCcceEEeee
Q 022698 240 --HVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 240 --~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
+.+++.++++++||+.++++..
T Consensus 213 ~rt~~e~~~ll~~AGf~~~~v~~~ 236 (253)
T d1tw3a2 213 LRTREKWDGLAASAGLVVEEVRQL 236 (253)
T ss_dssp CCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCCHHHHHHHHHHCCCeEEEEEEC
Confidence 2357888999999998887653
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.80 E-value=3.9e-19 Score=150.37 Aligned_cols=140 Identities=15% Similarity=0.104 Sum_probs=113.5
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.+++.+. ..+..+|||+|||+|.++..++.... .+|+++|+|+.|++.|+++.... +++++.+.|+.+
T Consensus 81 ~s~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~-----~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~ 151 (254)
T d1xtpa_ 81 GSRNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLY-----ATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMET 151 (254)
T ss_dssp HHHHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHC-----SEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGG
T ss_pred HHHHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcC-----ceEEEEcCCHHHHHhhhcccccc---ccceeEEccccc
Confidence 3445666654 35677999999999999998876543 48999999999999999886543 458999999999
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-----------------CchHH
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-----------------HVPEY 244 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----------------~~~~~ 244 (293)
+++++++||+|++..+++|++ +++...+++++++.|+|||.+++.+.. ..+++
T Consensus 152 ~~~~~~~fD~I~~~~vl~hl~----------d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~ 221 (254)
T d1xtpa_ 152 ATLPPNTYDLIVIQWTAIYLT----------DADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHY 221 (254)
T ss_dssp CCCCSSCEEEEEEESCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHH
T ss_pred cccCCCccceEEeeccccccc----------hhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHH
Confidence 888788999999999999998 335678999999999999999984421 23578
Q ss_pred HHHHHHcCCcceEEee
Q 022698 245 VRRLQELKMEDIRVSE 260 (293)
Q Consensus 245 ~~~l~~~gf~~~~~~~ 260 (293)
.++++++||+.++...
T Consensus 222 ~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 222 KRLFNESGVRVVKEAF 237 (254)
T ss_dssp HHHHHHHTCCEEEEEE
T ss_pred HHHHHHcCCEEEEEEe
Confidence 9999999999887653
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=3.2e-19 Score=150.23 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=101.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++|++.+++. +++.++|+.+ ..+.++||+|+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~------g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~-~~~~~~fD~V~ 189 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKL------GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEA-ALPFGPFDLLV 189 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHH-HGGGCCEEEEE
T ss_pred CccCEEEEcccchhHHHHHHHhc------CCEEEEEECChHHHHHHHHHHHHcCCc--eeEEeccccc-cccccccchhh
Confidence 46789999999999999877654 468999999999999999999999875 6788888765 34567899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC--CCchHHHHHHHHcCCcceEEee
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL--LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
+|...+ ....+++++.++|||||++++++. .+.+++.+.++++||..++...
T Consensus 190 ani~~~---------------~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~ 243 (254)
T d2nxca1 190 ANLYAE---------------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp EECCHH---------------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEE
T ss_pred hccccc---------------cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEE
Confidence 985544 345678899999999999998654 3456788899999999877654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=2.3e-18 Score=147.42 Aligned_cols=141 Identities=15% Similarity=0.127 Sum_probs=115.3
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
...+.+++.+. +.++.+|||||||.|..+..+++.. +++|+|+|+|+++++.++++++..++..++.+...|..
T Consensus 39 ~k~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~-----g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~ 112 (280)
T d2fk8a1 39 AKVDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-----DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE 112 (280)
T ss_dssp HHHHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred HHHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhC-----ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence 34556666663 7889999999999999998887765 36999999999999999999999998888999888877
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC----------------------
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL---------------------- 238 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---------------------- 238 (293)
++ +++||.|++...++|++ ..+...+++++.++|||||++++...
T Consensus 113 ~~---~~~fD~i~si~~~eh~~----------~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 179 (280)
T d2fk8a1 113 DF---AEPVDRIVSIEAFEHFG----------HENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARF 179 (280)
T ss_dssp GC---CCCCSEEEEESCGGGTC----------GGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHH
T ss_pred hh---ccchhhhhHhhHHHHhh----------hhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccc
Confidence 64 46899999999999997 22668999999999999999987321
Q ss_pred --------------CCchHHHHHHHHcCCcceEEee
Q 022698 239 --------------LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 239 --------------~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
....++.+.++++||+...+..
T Consensus 180 ~dfI~kyifPgg~lPS~~~l~~~~e~aGf~v~~~~~ 215 (280)
T d2fk8a1 180 IKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLS 215 (280)
T ss_dssp HHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEE
T ss_pred cchhhhhccCCCcccchHhhhhhHHhhccccceeee
Confidence 1224577778889999877654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.78 E-value=1.8e-18 Score=145.39 Aligned_cols=104 Identities=16% Similarity=0.264 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++. +.+++|+|+|+.|++.|++++...+. +++++++|+.++++ .++||+|+
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~------g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~-~~~fD~i~ 106 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPK------FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI-NRKFDLIT 106 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG------SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC-SCCEEEEE
T ss_pred CCCCeEEEEeCcCCHHHHHHHHh------CCccEeeccchhhhhhccccccccCc--cceeeccchhhhcc-cccccccc
Confidence 34579999999999999988865 35999999999999999999888775 48999999998765 46899999
Q ss_pred ec-chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 194 SA-AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
|. .+++++. ..+++..++++++++|+|||.+++
T Consensus 107 ~~~~~~~~~~---------~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 107 CCLDSTNYII---------DSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp ECTTGGGGCC---------SHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred eeeeeeeccC---------CHHHHHHHHHHHHHhCCCCeEEEE
Confidence 85 5666554 134788899999999999999885
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.78 E-value=5.3e-18 Score=145.61 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=102.9
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
...+.+++.+. +.++.+|||||||.|..+..+++..+ ++|+|+++|++.++.+++++...++.+++.+...|..
T Consensus 48 ~k~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-----~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~ 121 (291)
T d1kpia_ 48 AKRKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-----VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE 121 (291)
T ss_dssp HHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-----CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG
T ss_pred HHHHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-----cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc
Confidence 35666777764 78899999999999999999987764 6999999999999999999999999888999888865
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
. .+++||.|+|...+.|++........ ++...+++++.++|||||++++.
T Consensus 122 ~---~~~~fD~i~sie~~eH~~~~~~~~~~---~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 122 E---FDEPVDRIVSLGAFEHFADGAGDAGF---ERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp G---CCCCCSEEEEESCGGGTTCCSSCCST---THHHHHHHHHHHTSCTTCEEEEE
T ss_pred c---cccccceEeechhHHhcchhhhhhHH---HHHHHHHHHHHHhCCCCCceEEE
Confidence 3 36789999999999998732222111 26789999999999999999873
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.77 E-value=4.5e-18 Score=145.61 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=117.1
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
...+.+++.+. +.++.+|||||||.|..++.+++.. +++|+|+++|+..++.++++++..+..+++.+...|..
T Consensus 49 ~k~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-----g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~ 122 (285)
T d1kpga_ 49 AKIDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-----DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE 122 (285)
T ss_dssp HHHHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred HHHHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-----CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhh
Confidence 35566666664 7889999999999999999998875 47999999999999999999999998899999999988
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC----------------------
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL---------------------- 238 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---------------------- 238 (293)
+++ ++||.|+|...+.|+.. ++...+++++.++|||||++++.+.
T Consensus 123 ~~~---~~fD~i~si~~~eh~~~----------~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 189 (285)
T d1kpga_ 123 QFD---EPVDRIVSIGAFEHFGH----------ERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARF 189 (285)
T ss_dssp GCC---CCCSEEEEESCGGGTCT----------TTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHH
T ss_pred ccc---ccccceeeehhhhhcCc----------hhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhch
Confidence 764 68999999999999862 2667899999999999999987321
Q ss_pred --------------CCchHHHHHHHHcCCcceEEeee
Q 022698 239 --------------LHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 239 --------------~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
....++...++++||+..++...
T Consensus 190 ~~fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~~~~~ 226 (285)
T d1kpga_ 190 LKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSL 226 (285)
T ss_dssp HHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred hhHHHHHhccCCCCCChhhHHHHHHHhchhhcccccc
Confidence 12235667788899988776543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.1e-17 Score=140.77 Aligned_cols=155 Identities=8% Similarity=0.079 Sum_probs=114.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------CCCCc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------FGDNY 188 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~ 188 (293)
+..++||+|||+|+++..++++.+ +++++|+|+|+.+++.|++|++.+++.+++.+...+..... ..+++
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~----~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLN----GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEII 136 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred ccceEEEeCCCchHHHHHHHHhCC----CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCc
Confidence 345899999999999999999988 57999999999999999999999999999999887765421 23568
Q ss_pred ccEEEecchhhhhcccc-------------Ccchhhh----------HHHHHHHHHHHHHcccCCcEEE-EEc-CCCchH
Q 022698 189 FDVVVSAAFFHTVGKEY-------------GHRTVEA----------AAERMRVLGEMVRVLKPGGVGV-VWD-LLHVPE 243 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~-------------~~~~~~~----------~~~~~~~l~~~~~~LkpgG~l~-~~~-~~~~~~ 243 (293)
||+|+|||||+....+. ....+.. ..-...++++....++..|++. .++ ..+.++
T Consensus 137 fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~ 216 (250)
T d2h00a1 137 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAP 216 (250)
T ss_dssp BSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHH
T ss_pred eeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHH
Confidence 99999999998643211 0000000 0123456677778899999875 354 345678
Q ss_pred HHHHHHHcCCcceEEeeeeccceecceeeee
Q 022698 244 YVRRLQELKMEDIRVSERVTAFMVSSHIVSF 274 (293)
Q Consensus 244 ~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~ 274 (293)
+...|++.|+..+++.++..|.. .++++.+
T Consensus 217 i~~~L~~~g~~~i~~ie~~qG~~-~r~iiaW 246 (250)
T d2h00a1 217 LKEELRIQGVPKVTYTEFCQGRT-MRWALAW 246 (250)
T ss_dssp HHHHHHHTTCSEEEEEEEEETTE-EEEEEEE
T ss_pred HHHHHHHcCCCeEEEEEecCCCE-eEEEEEE
Confidence 99999999999999999988853 2344443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.76 E-value=3.4e-18 Score=143.86 Aligned_cols=111 Identities=27% Similarity=0.384 Sum_probs=91.9
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.++.... ..+..+|||||||+|..+..+++. +.+|+|+|+|+.|++.|++++...+. ++.+.++|+.++++
T Consensus 32 ~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~------~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~ 102 (251)
T d1wzna1 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER------GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF 102 (251)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC
T ss_pred HHHHHhc-CCCCCEEEEeCCCCCccchhhccc------ceEEEEEeeccccccccccccccccc--cchheehhhhhccc
Confidence 3444443 345678999999999999988875 46999999999999999999988765 48999999999886
Q ss_pred CCCcccEEEec-chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 185 GDNYFDVVVSA-AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 185 ~~~~fD~Iv~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+ ++||+|+|. .+++++. .++...++++++++|||||++++
T Consensus 103 ~-~~fD~I~~~~~~~~~~~----------~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 103 K-NEFDAVTMFFSTIMYFD----------EEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp C-SCEEEEEECSSGGGGSC----------HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred c-cccchHhhhhhhhhcCC----------hHHHHHHHHHHHHHcCCCcEEEE
Confidence 5 589999986 5666664 33778999999999999999976
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.76 E-value=1.6e-18 Score=143.90 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=100.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
..+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. +++.+..+|+.+.++ +++||+|+
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~------g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~-~~~fD~I~ 86 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH------FNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQL-PRRYDNIV 86 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT------CSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCC-SSCEEEEE
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc------CCeEEEEeCcHHHhhhhhcccc-----ccccccccccccccc-cccccccc
Confidence 34668999999999999877654 3589999999999999987743 348999999988765 57899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHH-HcccCCcEEEEEcC----------------------------------
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMV-RVLKPGGVGVVWDL---------------------------------- 238 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~---------------------------------- 238 (293)
|..+++|++ ++..+++++. ++|+|||.+++..+
T Consensus 87 ~~~vleh~~------------d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 154 (225)
T d2p7ia1 87 LTHVLEHID------------DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCT 154 (225)
T ss_dssp EESCGGGCS------------SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCC
T ss_pred ccceeEecC------------CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeec
Confidence 999999998 8999999998 79999999987421
Q ss_pred CCchHHHHHHHHcCCcceEEe
Q 022698 239 LHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 239 ~~~~~~~~~l~~~gf~~~~~~ 259 (293)
...+++.+++.++||+.++..
T Consensus 155 ~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 155 YALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp CCHHHHHHHHHHTTCEEEEEE
T ss_pred cCHHHHHHHHHHCCCEEEEEE
Confidence 123468888999999976643
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.76 E-value=3.3e-18 Score=139.25 Aligned_cols=105 Identities=23% Similarity=0.345 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+.+|||||||+|..+..++++ +.+|+|+|+|+.|++.++++++..++ +++++...|+.++++ +++||+|+|
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~------g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~fD~I~~ 101 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN------GYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTF-DGEYDFILS 101 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCC-CCCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHH------hhhhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccc-cccccEEEE
Confidence 3469999999999999999876 46999999999999999999988887 458999999988765 678999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+.+++++++ .+...+++++.++|+|||.+++..
T Consensus 102 ~~~~~~~~~----------~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 102 TVVMMFLEA----------QTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp ESCGGGSCT----------THHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeeeecCCH----------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999872 267789999999999999998854
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=1.6e-18 Score=145.10 Aligned_cols=99 Identities=22% Similarity=0.252 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++.. ..++.+|+.++++++++||+|+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~giD~s~~~l~~a~~~~~-------~~~~~~~~~~l~~~~~~fD~ii 107 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEMLEVAREKGV-------KNVVEAKAEDLPFPSGAFEAVL 107 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHHTC-------SCEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCEEEEECCCCchhccccccc------ceEEEEeecccccccccccccc-------ccccccccccccccccccccee
Confidence 45679999999999999988754 4699999999999999987632 2367899999988889999999
Q ss_pred ec-chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 194 SA-AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|. .+++|++ ++..+++++.++|||||.+++..
T Consensus 108 ~~~~~~~~~~------------d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 108 ALGDVLSYVE------------NKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp ECSSHHHHCS------------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eecchhhhhh------------hHHHHHHHHHhhcCcCcEEEEEE
Confidence 85 6889998 88899999999999999998854
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.74 E-value=4e-18 Score=142.88 Aligned_cols=139 Identities=14% Similarity=0.198 Sum_probs=108.8
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
....++..+ .+.|+.+|||+|||+|.++..+++.... ..+|+++|+++++++.|++|++..+...++++...|+.+
T Consensus 73 D~~~Ii~~l-~i~pG~rVLEiG~GsG~lt~~la~~v~~---~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~ 148 (250)
T d1yb2a1 73 DASYIIMRC-GLRPGMDILEVGVGSGNMSSYILYALNG---KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD 148 (250)
T ss_dssp --------C-CCCTTCEEEEECCTTSHHHHHHHHHHTT---SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT
T ss_pred HHHHHHHHc-CCCCcCEEEEeeeeCcHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeec
Confidence 344455444 4788999999999999999999988643 469999999999999999999887666789999999988
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEEe
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~~ 259 (293)
. +++++||.|+++. + ++..+++++.++|||||+++++... +.....+.+++.||..+++.
T Consensus 149 ~-~~~~~fD~V~ld~-----p------------~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~~~ 210 (250)
T d1yb2a1 149 F-ISDQMYDAVIADI-----P------------DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETV 210 (250)
T ss_dssp C-CCSCCEEEEEECC-----S------------CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEE
T ss_pred c-cccceeeeeeecC-----C------------chHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeEEE
Confidence 5 4577899999863 3 5567889999999999999886543 34567777888999988776
Q ss_pred eee
Q 022698 260 ERV 262 (293)
Q Consensus 260 ~~~ 262 (293)
+..
T Consensus 211 E~~ 213 (250)
T d1yb2a1 211 ELM 213 (250)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.74 E-value=3.3e-17 Score=138.48 Aligned_cols=138 Identities=25% Similarity=0.291 Sum_probs=114.4
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+++.. ++.+..+|||||||+|..+..+++..| +.+++++|+ +++++.++++++..+..+++.+...|..+ +.
T Consensus 72 ~~~~~~-d~~~~~~vlDvG~G~G~~~~~l~~~~P----~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~ 144 (256)
T d1qzza2 72 APADAY-DWSAVRHVLDVGGGNGGMLAAIALRAP----HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL 144 (256)
T ss_dssp HHHHTS-CCTTCCEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC
T ss_pred HHHhcC-CCccCCEEEEECCCCCHHHHHHHHhhc----CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-cc
Confidence 344443 355667999999999999999999887 569999998 78899999999999888899999999886 33
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------------------
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------- 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------- 239 (293)
+ .+||+|++..++|+++ +++...+++++++.|||||++++++..
T Consensus 145 p-~~~D~v~~~~vLh~~~----------d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g 213 (256)
T d1qzza2 145 P-VTADVVLLSFVLLNWS----------DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGG 213 (256)
T ss_dssp S-CCEEEEEEESCGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSC
T ss_pred c-ccchhhhccccccccC----------cHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCC
Confidence 3 4599999999999987 335678899999999999999986532
Q ss_pred ---CchHHHHHHHHcCCcceEEee
Q 022698 240 ---HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 ---~~~~~~~~l~~~gf~~~~~~~ 260 (293)
+.+++.++++++||+.++++.
T Consensus 214 ~~rt~~e~~~ll~~AGf~~~~~~~ 237 (256)
T d1qzza2 214 RVRTRDEVVDLAGSAGLALASERT 237 (256)
T ss_dssp CCCCHHHHHHHHHTTTEEEEEEEE
T ss_pred ccCCHHHHHHHHHHCCCceeEEEE
Confidence 235788999999999888765
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=1.3e-17 Score=140.54 Aligned_cols=145 Identities=19% Similarity=0.179 Sum_probs=116.9
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc--CCCCceEEE
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--GVQEYVTAR 175 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--~~~~~v~~~ 175 (293)
+.+.....++..+ .+.|+.+|||+|||+|..+..|++.... ..+|+++|+++++++.|++|++.. +..+++.+.
T Consensus 80 iypkD~s~Ii~~l-~i~PG~~VLE~G~GsG~lt~~La~~vgp---~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~ 155 (264)
T d1i9ga_ 80 IYPKDAAQIVHEG-DIFPGARVLEAGAGSGALTLSLLRAVGP---AGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLV 155 (264)
T ss_dssp CCHHHHHHHHHHT-TCCTTCEEEEECCTTSHHHHHHHHHHCT---TSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEE
T ss_pred cchHHHHHHHHHh-CCCCCCEEEecCcCCcHHHHHHHHhhCC---CcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEE
Confidence 4456666677666 4789999999999999999999998743 469999999999999999998764 334679999
Q ss_pred EcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHH-HcC
Q 022698 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQ-ELK 252 (293)
Q Consensus 176 ~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~-~~g 252 (293)
+.|+.+.++++++||.|+++ ++ +|..++.++.++|||||++++.... +.....+.++ +.|
T Consensus 156 ~~d~~~~~~~~~~fDaV~ld-----lp------------~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~ 218 (264)
T d1i9ga_ 156 VSDLADSELPDGSVDRAVLD-----ML------------APWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQC 218 (264)
T ss_dssp CSCGGGCCCCTTCEEEEEEE-----SS------------CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSS
T ss_pred ecccccccccCCCcceEEEe-----cC------------CHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCC
Confidence 99998877888999999974 44 6778899999999999999886543 3456777775 567
Q ss_pred CcceEEeeeec
Q 022698 253 MEDIRVSERVT 263 (293)
Q Consensus 253 f~~~~~~~~~~ 263 (293)
|..+++.+-+.
T Consensus 219 f~~i~~~E~l~ 229 (264)
T d1i9ga_ 219 WTEPRAWETLQ 229 (264)
T ss_dssp BCCCEEECCCC
T ss_pred eecceEEEEEE
Confidence 98888765443
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.74 E-value=2.8e-17 Score=136.43 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=116.0
Q ss_pred CccchHHHHHHHHHhcC--CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCce
Q 022698 95 AVPLHYDMAQRMVGSVN--DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYV 172 (293)
Q Consensus 95 ~~~~~~~~~~~l~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v 172 (293)
..+....++..+..-+. ++.++.+|||+|||+|..+.+++...+ +.+|+|+|+|+.|++.+++++... +++
T Consensus 52 w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~----~g~V~aVDiS~~~i~~a~~~a~~~---~ni 124 (230)
T d1g8sa_ 52 WNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIAD----KGIVYAIEYAPRIMRELLDACAER---ENI 124 (230)
T ss_dssp CCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTT----TSEEEEEESCHHHHHHHHHHTTTC---TTE
T ss_pred ECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCC----CCEEEEEeCcHHHHHHHHHHHhhh---ccc
Confidence 34455567777766543 367889999999999999999998765 469999999999999999887665 347
Q ss_pred EEEEcCCCCCC-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------CC-----
Q 022698 173 TAREGDVRSLP-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------LH----- 240 (293)
Q Consensus 173 ~~~~~d~~~~~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------~~----- 240 (293)
..+..|..... +.+..+|++++...+++.+ ++..+++++.+.|||||.++++.. ..
T Consensus 125 ~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~------------~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~ 192 (230)
T d1g8sa_ 125 IPILGDANKPQEYANIVEKVDVIYEDVAQPN------------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEI 192 (230)
T ss_dssp EEEECCTTCGGGGTTTCCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHH
T ss_pred ceEEEeeccCcccccccceeEEeeccccchH------------HHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHH
Confidence 77888877643 3456678877777777766 888999999999999999888531 11
Q ss_pred chHHHHHHHHcCCcceEEeeeeccce
Q 022698 241 VPEYVRRLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 241 ~~~~~~~l~~~gf~~~~~~~~~~~~~ 266 (293)
..+..+.|+++||+.++.. ++.++.
T Consensus 193 ~~e~~~~L~~aGF~ive~i-dL~py~ 217 (230)
T d1g8sa_ 193 FKEQKEILEAGGFKIVDEV-DIEPFE 217 (230)
T ss_dssp HHHHHHHHHHHTEEEEEEE-ECTTTS
T ss_pred HHHHHHHHHHcCCEEEEEe-cCCCCc
Confidence 1356788899999988765 455553
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=2.2e-17 Score=139.89 Aligned_cols=143 Identities=20% Similarity=0.218 Sum_probs=116.8
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
+.+.....++..+ .+.++.+|||+|||+|.++..+++.... +++|+++|+|+++++.|++|++..++.+++.+...
T Consensus 87 iypkd~~~Ii~~l-~i~pG~~VLDiG~GsG~lt~~lA~~~~~---~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~ 162 (266)
T d1o54a_ 87 VYPKDSSFIAMML-DVKEGDRIIDTGVGSGAMCAVLARAVGS---SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR 162 (266)
T ss_dssp CCHHHHHHHHHHT-TCCTTCEEEEECCTTSHHHHHHHHHTTT---TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC
T ss_pred cchHHHHHHHHhh-CCCCCCEEEECCCCCCHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEec
Confidence 4455666667666 4789999999999999999999987643 46999999999999999999999998888999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcc
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMED 255 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~ 255 (293)
|+.. .+....||.|+.. ++ ++..+++++.++|||||++++.... +..+..+.+++.||..
T Consensus 163 d~~~-~~~~~~~D~V~~d-----~p------------~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~ 224 (266)
T d1o54a_ 163 DISE-GFDEKDVDALFLD-----VP------------DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR 224 (266)
T ss_dssp CGGG-CCSCCSEEEEEEC-----CS------------CGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred cccc-cccccceeeeEec-----CC------------CHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCcee
Confidence 9765 3456779998864 44 6678899999999999999886543 3456788889999998
Q ss_pred eEEeeee
Q 022698 256 IRVSERV 262 (293)
Q Consensus 256 ~~~~~~~ 262 (293)
+++.+-+
T Consensus 225 i~~~E~l 231 (266)
T d1o54a_ 225 IEVWESL 231 (266)
T ss_dssp EEEECCC
T ss_pred EEEEEEE
Confidence 8887643
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.72 E-value=2.4e-17 Score=139.12 Aligned_cols=110 Identities=23% Similarity=0.225 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-CCCcccEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-GDNYFDVV 192 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I 192 (293)
.++.+|||+|||+|..+..+++.- ..+|+|+|+|+.|++.|++++...+...++.|.++|+...++ ..++||+|
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~-----~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V 97 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAG-----IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI 97 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHT-----CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcC-----CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEE
Confidence 467899999999999988887652 248999999999999999998887776789999999976554 46789999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+|..++++... +.++...+++++.++|||||.+++.
T Consensus 98 ~~~~~l~~~~~--------~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 98 SSQFSFHYAFS--------TSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp EEESCGGGGGS--------SHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEcceeeecCC--------CHHHHHHHHHHHhceeCCCCEEEEE
Confidence 99999988631 1346778999999999999998874
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.71 E-value=3e-17 Score=132.67 Aligned_cols=120 Identities=16% Similarity=0.096 Sum_probs=94.5
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC----------
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV---------- 168 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~---------- 168 (293)
++.+.+ ....+. ..++.+|||+|||+|..+..|+++ +.+|+|+|+|+.|++.|+++++..+.
T Consensus 6 ~~~~~~-~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~ 77 (201)
T d1pjza_ 6 NKDLQQ-YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 77 (201)
T ss_dssp THHHHH-HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEE
T ss_pred HHHHHH-HHHHcC-CCCCCEEEEecCcCCHHHHHHHHc------CCceEeecccHHHHHHHHHHhccccchhhhhhhhhc
Confidence 344434 344443 567889999999999999999876 57999999999999999998754322
Q ss_pred -CCceEEEEcCCCCCCC-CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 169 -QEYVTAREGDVRSLPF-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 169 -~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
...+.+.++|+.+++. ...+||+|++...+++++ .++....++++.++|||||.+++.
T Consensus 78 ~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~----------~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 78 AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALP----------ADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp ECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSC----------HHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred cccccceecccccccccccccceeEEEEEeeeEecc----------hhhhHHHHHHHHHhcCCCcEEEEE
Confidence 1235788888888653 346799999999999987 346788999999999999998773
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=1.4e-16 Score=130.83 Aligned_cols=116 Identities=21% Similarity=0.165 Sum_probs=97.2
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
.++.+...+++.+. +.++.+|||||||+|..+..+++.... ..+|+++|+++.+++.|+++++..+. .++.+.++
T Consensus 59 ~~P~~~a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~---~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~ 133 (213)
T d1dl5a1 59 SQPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGE---KGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCG 133 (213)
T ss_dssp CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEES
T ss_pred ccchhhHHHHHhhh-ccccceEEEecCccchhHHHHHHHhCC---CCcEEEeecchhhHHHhhhhHhhhcc-cccccccC
Confidence 44667777888775 788999999999999999999887753 45999999999999999999998887 45888899
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|..+.....++||+|+++..+++++ + ++.+.|||||+|++.
T Consensus 134 d~~~~~~~~~~fD~I~~~~~~~~~p------------~------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 134 DGYYGVPEFSPYDVIFVTVGVDEVP------------E------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp CGGGCCGGGCCEEEEEECSBBSCCC------------H------HHHHHEEEEEEEEEE
T ss_pred chHHccccccchhhhhhhccHHHhH------------H------HHHHhcCCCcEEEEE
Confidence 9887665677899999998888776 2 356789999999873
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.1e-16 Score=132.93 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=97.1
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC----------
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG---------- 167 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~---------- 167 (293)
.++.+.+.+.+.+. ..++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.++++.....
T Consensus 29 ~~~~l~~~~~~~l~-~~~~~rvLd~GCG~G~~a~~LA~~------G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~ 101 (229)
T d2bzga1 29 GHQLLKKHLDTFLK-GKSGLRVFFPLCGKAVEMKWFADR------GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPG 101 (229)
T ss_dssp CCHHHHHHHHHHHT-TCCSCEEEETTCTTCTHHHHHHHT------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTT
T ss_pred CCHHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHHhC------CCcEEEEeCCHHHHHHHHHHhhccccccchhcccc
Confidence 44555565555543 467789999999999999999876 5799999999999999988765321
Q ss_pred ------CCCceEEEEcCCCCCC-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 168 ------VQEYVTAREGDVRSLP-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 168 ------~~~~v~~~~~d~~~~~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
...++.+.++|+.+++ ...+.||+|+....++++++ ++...+++++.++|||||.+++.
T Consensus 102 ~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~----------~~r~~~~~~~~~~LkpgG~~~l~ 167 (229)
T d2bzga1 102 TKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINP----------GDRKCYADTMFSLLGKKFQYLLC 167 (229)
T ss_dssp CEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCG----------GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred cceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccc----------hhhHHHHHHHHhhcCCcceEEEE
Confidence 1245899999998865 44678999999999998873 36778999999999999987774
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.1e-16 Score=135.23 Aligned_cols=139 Identities=11% Similarity=0.028 Sum_probs=102.5
Q ss_pred HHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCC--CcEEEEEeCCHHHHHHHHHHHHhcCCCCceE--EEEcCCCC-
Q 022698 107 VGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGS--LGRVVGLDCKKRTTLSTLRTAKMEGVQEYVT--AREGDVRS- 181 (293)
Q Consensus 107 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~--~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~--~~~~d~~~- 181 (293)
+..+....+..+|||||||+|.++..+++.+.+..+ ..+++|+|+|+.|++.+++++......+++. +...++.+
T Consensus 32 l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (280)
T d1jqea_ 32 IGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEY 111 (280)
T ss_dssp TTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHH
T ss_pred HHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhh
Confidence 333433345558999999999999999887654322 3578999999999999999876543333344 34444322
Q ss_pred -----CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------
Q 022698 182 -----LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------ 238 (293)
Q Consensus 182 -----~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------ 238 (293)
.+.++++||+|+|..++++++ ++..++++++++|+|||.++++..
T Consensus 112 ~~~~~~~~~~~~fD~I~~~~~l~~~~------------d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~ 179 (280)
T d1jqea_ 112 QSRMLEKKELQKWDFIHMIQMLYYVK------------DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFP 179 (280)
T ss_dssp HHHHTTSSSCCCEEEEEEESCGGGCS------------CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSC
T ss_pred cchhcccCCCCceeEEEEccceecCC------------CHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcC
Confidence 134578999999999999998 889999999999999999887432
Q ss_pred -------CCchHHHHHHHHcCCcceE
Q 022698 239 -------LHVPEYVRRLQELKMEDIR 257 (293)
Q Consensus 239 -------~~~~~~~~~l~~~gf~~~~ 257 (293)
...+++.+.|.+.||....
T Consensus 180 ~~~~~~~~~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 180 QDDLCQYITSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp CCTTSCCCCHHHHHHHHHHHTCCEEE
T ss_pred CCcccccCCHHHHHHHHHHCCCceEE
Confidence 1234678888888987443
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.67 E-value=4e-16 Score=126.99 Aligned_cols=137 Identities=16% Similarity=0.101 Sum_probs=103.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEEE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVVV 193 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~Iv 193 (293)
...|||||||+|..+..+++..| ...++|+|+++.++..+.++++..++ +++.++++|+..+. ++++++|.|.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p----~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~ 104 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNP----DINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVY 104 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCT----TSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred CceEEEEEecCcHHHHHHHHhCC----CCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhccc
Confidence 44799999999999999999877 57999999999999999999999988 57999999998754 6788999999
Q ss_pred ecchhhhhccccC-cchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-C-chHHHHHHHHcCCcceEEeeee
Q 022698 194 SAAFFHTVGKEYG-HRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-H-VPEYVRRLQELKMEDIRVSERV 262 (293)
Q Consensus 194 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~-~~~~~~~l~~~gf~~~~~~~~~ 262 (293)
++.|..+...... .+. -...+++.++++|||||.|++.+.. . .+...+.+.+.++.......+.
T Consensus 105 i~fp~P~~k~~h~k~Rl-----~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~~~~~~~d~ 171 (204)
T d2fcaa1 105 LNFSDPWPKKRHEKRRL-----TYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVSLDL 171 (204)
T ss_dssp EESCCCCCSGGGGGGST-----TSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSG
T ss_pred cccccccchhhhcchhh-----hHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCccccCChhh
Confidence 8876554331000 000 0147999999999999999885421 1 2345666677777654444443
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.6e-16 Score=134.01 Aligned_cols=133 Identities=20% Similarity=0.095 Sum_probs=97.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc----------------------
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY---------------------- 171 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~---------------------- 171 (293)
.++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++++..+....
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~-----~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS-----FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE 124 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-----EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc-----cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHH
Confidence 356789999999998876554331 24899999999999999999876542210
Q ss_pred ------e-EEEEcCCC----CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC--
Q 022698 172 ------V-TAREGDVR----SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-- 238 (293)
Q Consensus 172 ------v-~~~~~d~~----~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-- 238 (293)
+ .....+.. ..+.+.++||+|++..+++++... .+++..+++++.++|||||.+++.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~--------~~~~~~~l~~i~~~LkpGG~li~~~~~~ 196 (257)
T d2a14a1 125 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCS--------LDAYRAALCNLASLLKPGGHLVTTVTLR 196 (257)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSS--------HHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhccc--------HHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 0 11222221 224567889999999999988521 23778899999999999999998542
Q ss_pred ---------------CCchHHHHHHHHcCCcceEEe
Q 022698 239 ---------------LHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 239 ---------------~~~~~~~~~l~~~gf~~~~~~ 259 (293)
...+++.++|+++||+.+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 232 (257)
T d2a14a1 197 LPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLL 232 (257)
T ss_dssp CCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cccceeccccccccCCCHHHHHHHHHHCCCEEEEEE
Confidence 245789999999999977764
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.2e-16 Score=132.80 Aligned_cols=138 Identities=17% Similarity=0.157 Sum_probs=102.0
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+.+.+. .++.+|||||||+|..+..+++..+ .+++++|+|+.+++.|++++...+ .++.+...|+..
T Consensus 42 ~~~~la~~~~--~~g~~VLdIGcG~G~~a~~~a~~~~-----~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~ 112 (229)
T d1zx0a1 42 YMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAPI-----DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWED 112 (229)
T ss_dssp HHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHTSCE-----EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHH
T ss_pred HHHHHHHhhc--cCCCeEEEeeccchHHHHHHHHcCC-----CeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccc
Confidence 4444555543 4567999999999999988876532 589999999999999999987765 347777777654
Q ss_pred C--CCCCCcccEEEec-----chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---------------
Q 022698 182 L--PFGDNYFDVVVSA-----AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--------------- 239 (293)
Q Consensus 182 ~--~~~~~~fD~Iv~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--------------- 239 (293)
. ++++++||.|+.. ...++.. ++..++++++++|||||+|++.+..
T Consensus 113 ~~~~~~~~~fD~i~fD~~~~~~~~~~~~------------~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~ 180 (229)
T d1zx0a1 113 VAPTLPDGHFDGILYDTYPLSEETWHTH------------QFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITI 180 (229)
T ss_dssp HGGGSCTTCEEEEEECCCCCBGGGTTTH------------HHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHH
T ss_pred cccccccccccceeeccccccccccccc------------CHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcch
Confidence 2 3567889999853 3444554 8889999999999999999874311
Q ss_pred -CchHHHHHHHHcCCcceEEee
Q 022698 240 -HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 -~~~~~~~~l~~~gf~~~~~~~ 260 (293)
........+.++||+...+..
T Consensus 181 ~~~~~~~~~l~~agF~~~~i~~ 202 (229)
T d1zx0a1 181 MFEETQVPALLEAGFRRENIRT 202 (229)
T ss_dssp HHHHHTHHHHHHTTCCGGGEEE
T ss_pred hhhhHHHHHHHHCCCeeEEEEE
Confidence 112455667889998776654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.66 E-value=6.8e-16 Score=126.20 Aligned_cols=146 Identities=11% Similarity=0.071 Sum_probs=102.5
Q ss_pred chHHHHHHHHHh-cCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 98 LHYDMAQRMVGS-VNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 98 ~~~~~~~~l~~~-~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
....++..++.- -..+.|+.+|||+|||+|..+.++++..+ ..+|+|+|+|+.|++.++++++..+ ++.++.
T Consensus 38 ~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~----~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~ 110 (209)
T d1nt2a_ 38 WRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD----EGIIYAVEYSAKPFEKLLELVRERN---NIIPLL 110 (209)
T ss_dssp GGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTT----TSEEEEECCCHHHHHHHHHHHHHCS---SEEEEC
T ss_pred cchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhcc----CCeEEEEeCCHHHHHHHHHHhhccC---CceEEE
Confidence 334455555432 22467899999999999999999998876 3599999999999999999988763 589999
Q ss_pred cCCCCCCCCCC---cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------CCch-H---
Q 022698 177 GDVRSLPFGDN---YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------LHVP-E--- 243 (293)
Q Consensus 177 ~d~~~~~~~~~---~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------~~~~-~--- 243 (293)
.|....+.... .+|+|+++ +.+.. +...+++++.+.|||||.+++... ...+ .
T Consensus 111 ~d~~~~~~~~~~~~~vd~v~~~--~~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~ 176 (209)
T d1nt2a_ 111 FDASKPWKYSGIVEKVDLIYQD--IAQKN------------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFK 176 (209)
T ss_dssp SCTTCGGGTTTTCCCEEEEEEC--CCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHH
T ss_pred eeccCccccccccceEEEEEec--ccChh------------hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHH
Confidence 99887543333 35555443 33333 677899999999999999988532 1111 1
Q ss_pred -HHHHHHHcCCcceEEeeeeccce
Q 022698 244 -YVRRLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 244 -~~~~l~~~gf~~~~~~~~~~~~~ 266 (293)
..+. .+.||+.++.. ++.+|.
T Consensus 177 ~~~~~-l~~gf~i~E~i-~L~P~~ 198 (209)
T d1nt2a_ 177 SVLKE-MEGDFKIVKHG-SLMPYH 198 (209)
T ss_dssp HHHHH-HHTTSEEEEEE-ECTTTC
T ss_pred HHHHH-HHcCCEEEEEE-ccCCCc
Confidence 2222 24799888755 355543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=5.1e-16 Score=132.01 Aligned_cols=108 Identities=25% Similarity=0.358 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
..+...+.+.+. .++.+|||+|||+|.++..+++..+ +.+++|+|+|+.|++.|+++. +++.+.++|+
T Consensus 71 ~~~~~~l~~~~~--~~~~~iLDiGcG~G~~~~~l~~~~~----~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~ 138 (268)
T d1p91a_ 71 DAIVAQLRERLD--DKATAVLDIGCGEGYYTHAFADALP----EITTFGLDVSKVAIKAAAKRY------PQVTFCVASS 138 (268)
T ss_dssp HHHHHHHHHHSC--TTCCEEEEETCTTSTTHHHHHHTCT----TSEEEEEESCHHHHHHHHHHC------TTSEEEECCT
T ss_pred HHHHHHHHHhcC--CCCCEEEEeCCCCcHHHHHHHHHCC----CCEEEEecchHhhhhhhhccc------ccccceeeeh
Confidence 334444444443 3567999999999999999988765 569999999999999887762 3489999999
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.++|+++++||+|++....++ ++++.|+|||||.+++...
T Consensus 139 ~~l~~~~~sfD~v~~~~~~~~-------------------~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 139 HRLPFSDTSMDAIIRIYAPCK-------------------AEELARVVKPGGWVITATP 178 (268)
T ss_dssp TSCSBCTTCEEEEEEESCCCC-------------------HHHHHHHEEEEEEEEEEEE
T ss_pred hhccCCCCCEEEEeecCCHHH-------------------HHHHHHHhCCCcEEEEEee
Confidence 999999999999999765543 3468899999999998654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.64 E-value=1.7e-15 Score=125.06 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=111.9
Q ss_pred cchHHHHHHHHHhcC--CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 97 PLHYDMAQRMVGSVN--DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
+....+...++.-+. .+.|+.+|||+|||+|..+.++++.... +.+|+|+|+|+.+++.++++++..+ ++..
T Consensus 53 p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~---~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~ 126 (227)
T d1g8aa_ 53 PNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGW---EGKIFGIEFSPRVLRELVPIVEERR---NIVP 126 (227)
T ss_dssp TTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCT---TSEEEEEESCHHHHHHHHHHHSSCT---TEEE
T ss_pred CCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCC---CCEEEEEeCcHHHHHHHHHHHHhcC---CceE
Confidence 344566776765443 3678999999999999999999998743 4699999999999999999887653 3677
Q ss_pred EEcCCCCC---CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc------CCCch-H-
Q 022698 175 REGDVRSL---PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD------LLHVP-E- 243 (293)
Q Consensus 175 ~~~d~~~~---~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~------~~~~~-~- 243 (293)
+..|.... +.....+|+|++..+. .. +...+++++.+.|||||.++++. ....+ .
T Consensus 127 i~~d~~~~~~~~~~~~~vD~i~~d~~~--~~------------~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v 192 (227)
T d1g8aa_ 127 ILGDATKPEEYRALVPKVDVIFEDVAQ--PT------------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQV 192 (227)
T ss_dssp EECCTTCGGGGTTTCCCEEEEEECCCS--TT------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHH
T ss_pred EEEECCCcccccccccceEEEEEEccc--cc------------hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHH
Confidence 77887653 2334678998876332 22 66789999999999999988742 11122 1
Q ss_pred --HHHHHHHcCCcceEEeeeeccceecceeeeeec
Q 022698 244 --YVRRLQELKMEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 244 --~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
..+.+.+.||+.++... +.+|.....++.++|
T Consensus 193 ~~~v~~l~~~gf~iie~i~-L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 193 FREVERELSEYFEVIERLN-LEPYEKDHALFVVRK 226 (227)
T ss_dssp HHHHHHHHHTTSEEEEEEE-CTTTSSSEEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEEc-CCCCCCceEEEEEEe
Confidence 23445577999887653 555532223455554
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.1e-15 Score=126.23 Aligned_cols=118 Identities=23% Similarity=0.248 Sum_probs=96.3
Q ss_pred chHHHHHHHHHhcC-CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC----Cce
Q 022698 98 LHYDMAQRMVGSVN-DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ----EYV 172 (293)
Q Consensus 98 ~~~~~~~~l~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~----~~v 172 (293)
..+.+...+++.+. ++.++.+|||||||+|..+..+++.... ..+|+++|+++++++.|+++++..+.. +++
T Consensus 58 s~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~---~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~ 134 (224)
T d1i1na_ 58 SAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGC---TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV 134 (224)
T ss_dssp CCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCT---TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE
T ss_pred hhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCC---CceEEEEcCCHHHHHHHHHhccccCcccccccce
Confidence 44667777887764 4678899999999999999988876543 459999999999999999998875532 468
Q ss_pred EEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 173 TAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 173 ~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
.+..+|........++||+|+++....+++ ..+.+.|||||+|++.
T Consensus 135 ~~~~gD~~~~~~~~~~fD~I~~~~~~~~ip------------------~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 135 QLVVGDGRMGYAEEAPYDAIHVGAAAPVVP------------------QALIDQLKPGGRLILP 180 (224)
T ss_dssp EEEESCGGGCCGGGCCEEEEEECSBBSSCC------------------HHHHHTEEEEEEEEEE
T ss_pred EEEEeecccccchhhhhhhhhhhcchhhcC------------------HHHHhhcCCCcEEEEE
Confidence 999999988766678999999998888776 2467899999999883
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.2e-15 Score=132.32 Aligned_cols=144 Identities=19% Similarity=0.202 Sum_probs=107.7
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc----------C
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME----------G 167 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~----------~ 167 (293)
+.+..+..++..+ .+.|+.+|||+|||+|.++..|++.+.. ..+|+++|+++++++.|++|++.. +
T Consensus 82 iypkD~~~Il~~l-~i~pG~rVLE~GtGsG~lt~~LAr~vg~---~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~ 157 (324)
T d2b25a1 82 TFPKDINMILSMM-DINPGDTVLEAGSGSGGMSLFLSKAVGS---QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEE 157 (324)
T ss_dssp CCHHHHHHHHHHH-TCCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSC
T ss_pred cccccHHHHHHHh-CCCCCCEEEEecccccHHHHHHHHHhCC---CcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 3455566667666 4789999999999999999999988753 469999999999999999998753 3
Q ss_pred CCCceEEEEcCCCCCC--CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchH
Q 022698 168 VQEYVTAREGDVRSLP--FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPE 243 (293)
Q Consensus 168 ~~~~v~~~~~d~~~~~--~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~ 243 (293)
..+++.+...|+.+.. ..+..||.|+.. ++ +|..++.++.++|||||+|++.... +...
T Consensus 158 ~~~nv~~~~~di~~~~~~~~~~~fD~V~LD-----~p------------~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~ 220 (324)
T d2b25a1 158 WPDNVDFIHKDISGATEDIKSLTFDAVALD-----ML------------NPHVTLPVFYPHLKHGGVCAVYVVNITQVIE 220 (324)
T ss_dssp CCCCEEEEESCTTCCC-------EEEEEEC-----SS------------STTTTHHHHGGGEEEEEEEEEEESSHHHHHH
T ss_pred cccceeEEecchhhcccccCCCCcceEeec-----Cc------------CHHHHHHHHHHhccCCCEEEEEeCCHHHHHH
Confidence 3467999999987753 345789999974 33 4556889999999999999875433 3345
Q ss_pred HHHHHHH--cCCcceEEeeee
Q 022698 244 YVRRLQE--LKMEDIRVSERV 262 (293)
Q Consensus 244 ~~~~l~~--~gf~~~~~~~~~ 262 (293)
..+.|++ .||..+++.+-+
T Consensus 221 ~~~~l~~~~~~f~~i~~~E~~ 241 (324)
T d2b25a1 221 LLDGIRTCELALSCEKISEVI 241 (324)
T ss_dssp HHHHHHHHTCCEEEEEEECCC
T ss_pred HHHHHHHcCCCceeeEEEEEE
Confidence 6666764 468888776543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6.4e-15 Score=124.76 Aligned_cols=135 Identities=19% Similarity=0.115 Sum_probs=98.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC------------------------
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ------------------------ 169 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~------------------------ 169 (293)
..+.+|||+|||+|..+...+... ..+|+|+|+|+.|++.++++++.....
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~-----~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 127 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSH-----FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKE 127 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG-----CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhccc-----CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhH
Confidence 456799999999998764333222 248999999999999999876543211
Q ss_pred -----CceEEEEcCCCCC------CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 170 -----EYVTAREGDVRSL------PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 170 -----~~v~~~~~d~~~~------~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.......+|+... +...++||+|++..+++++.++ .+++..++++++++|||||.|++.+.
T Consensus 128 ~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~--------~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 128 RQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPD--------LASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp HHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSS--------HHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccC--------HHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 0123445666432 1335689999999999988622 23678999999999999999988432
Q ss_pred -----------------CCchHHHHHHHHcCCcceEEeee
Q 022698 239 -----------------LHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 239 -----------------~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
...+++.+.++++||+.++....
T Consensus 200 ~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~ 239 (263)
T d2g72a1 200 LEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTY 239 (263)
T ss_dssp ESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 34578999999999998776543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.59 E-value=1.5e-14 Score=117.47 Aligned_cols=134 Identities=18% Similarity=0.090 Sum_probs=100.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEEE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVVV 193 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~Iv 193 (293)
...|||||||+|..+..+|+..| ...++|+|+++.++..|.+++...++ +++.+..+|+.++. ++++++|.|+
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p----~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~ 106 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNP----DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLY 106 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred CCeEEEEeccCCHHHHHHHHHCC----CCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehhc
Confidence 34799999999999999999987 46999999999999999999999887 46999999998764 5678999999
Q ss_pred ecchhhhhccccC-cchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-C-chHHHHHHHHcCCcceEEe
Q 022698 194 SAAFFHTVGKEYG-HRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-H-VPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 194 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~-~~~~~~~l~~~gf~~~~~~ 259 (293)
++.|-.+...... .+. -...+++.+.++|||||.|++.+.. . .....+.+.+.++......
T Consensus 107 i~fPdPw~K~~h~krRl-----~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~~~ 170 (204)
T d1yzha1 107 LNFSDPWPKKRHEKRRL-----TYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVW 170 (204)
T ss_dssp EESCCCCCSGGGGGGST-----TSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ccccccccchhhhhhhh-----hHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccccccc
Confidence 8866543321000 000 1157899999999999999885421 1 2344566667776544433
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=2.7e-15 Score=128.98 Aligned_cols=122 Identities=18% Similarity=0.276 Sum_probs=87.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC---ceEEEEcC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE---YVTAREGD 178 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~---~v~~~~~d 178 (293)
..+++.+.+.. .+..+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|+++....+... ...+...|
T Consensus 44 ~~~~l~~~l~~-~~~~~vLD~GcG~G~~~~~la~~------g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~ 116 (292)
T d1xvaa_ 44 YKAWLLGLLRQ-HGCHRVLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 116 (292)
T ss_dssp HHHHHHHHHHH-TTCCEEEESSCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred HHHHHHHHhhh-cCCCEEEEecCCCcHHHHHHHHc------CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecc
Confidence 34455555432 45679999999999999999875 4699999999999999999887665431 23445555
Q ss_pred CCCCC---CCCCcccEEEec-chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 179 VRSLP---FGDNYFDVVVSA-AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 179 ~~~~~---~~~~~fD~Iv~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+..+. ...++||.|+|. .+++|++.... ..++...++++++++|||||.|++
T Consensus 117 ~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~LkpgG~li~ 172 (292)
T d1xvaa_ 117 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKG-----DQSEHRLALKNIASMVRPGGLLVI 172 (292)
T ss_dssp GGGHHHHSCCTTCEEEEEECSSCGGGSCCTTS-----SSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccCCCCCceEEEEecCchhhcCCccc-----ChHHHHHHHHHHHHHcCcCcEEEE
Confidence 54321 134679999985 56777652111 113677899999999999999988
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=9.1e-15 Score=126.93 Aligned_cols=124 Identities=22% Similarity=0.207 Sum_probs=95.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC----CCCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL----PFGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD 190 (293)
.+.+|||+|||+|.++++++.. +.+|+++|+|+.+++.+++|++.+++ +++++++.|+.+. +...++||
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g------~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG------FREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH------EEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeeeccCCCCcHHHHHHHhc------CCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhhhcCCC
Confidence 4679999999999999987753 46999999999999999999999998 4699999998763 23457899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC---chHHHHHH
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH---VPEYVRRL 248 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~l 248 (293)
+|+++||...... ........+..+++..+.++|+|||.|+++++.. ..++.+.+
T Consensus 218 ~Vi~DpP~~~~~~---~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v 275 (318)
T d1wxxa2 218 LVVLDPPAFAKGK---KDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMV 275 (318)
T ss_dssp EEEECCCCSCCST---TSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred EEEEcCCccccch---HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHH
Confidence 9999988643321 1222233456788999999999999999876543 33444444
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.56 E-value=1.2e-14 Score=119.59 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=89.3
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. +.++.+|||||||+|..+..+++. ..+|+++|+++.+++.|+++.... .++.++.+
T Consensus 54 ~~p~~~a~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l------~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~ 123 (224)
T d1vbfa_ 54 TALNLGIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEI------VDKVVSVEINEKMYNYASKLLSYY---NNIKLILG 123 (224)
T ss_dssp CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEES
T ss_pred ehhhhHHHHHHHhh-hcccceEEEecCCCCHHHHHHHHH------hcccccccccHHHHHHHHHHHhcc---cccccccC
Confidence 44556667777764 788999999999999999888765 359999999999999999886643 56999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|........++||.|++.....+++ ..+.+.|+|||+|++.
T Consensus 124 d~~~g~~~~~pfD~Iiv~~a~~~ip------------------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 124 DGTLGYEEEKPYDRVVVWATAPTLL------------------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp CGGGCCGGGCCEEEEEESSBBSSCC------------------HHHHHTEEEEEEEEEE
T ss_pred chhhcchhhhhHHHHHhhcchhhhh------------------HHHHHhcCCCCEEEEE
Confidence 9876444567899999988877766 2356789999999873
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=9.6e-15 Score=127.18 Aligned_cols=129 Identities=17% Similarity=0.124 Sum_probs=98.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC----CCCCCcc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL----PFGDNYF 189 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~f 189 (293)
.++.+|||+|||+|.+++.++..- ..+|+++|+|+.+++.+++|++.+|+.++++++++|+.+. +....+|
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~g-----a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAG-----ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCCeeecccCcccchhhhhhhcC-----CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCC
Confidence 467899999999999999887652 2489999999999999999999999988899999998753 2235689
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC---chHHHHHHHH
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH---VPEYVRRLQE 250 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~l~~ 250 (293)
|+|++++|..... .........+..+++..+.++|+|||+|+++++.. .+++.+.+.+
T Consensus 219 D~Vi~DpP~~~~~---~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~ 279 (324)
T d2as0a2 219 DIVVLDPPAFVQH---EKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIA 279 (324)
T ss_dssp EEEEECCCCSCSS---GGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CchhcCCccccCC---HHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHH
Confidence 9999998864332 11222223456778899999999999999876543 3445555443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.55 E-value=8.1e-15 Score=113.78 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=88.4
Q ss_pred HHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-CC
Q 022698 106 MVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-PF 184 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 184 (293)
+...+.+.-.+.+|||+|||+|.+++.++.+. ..+|+++|.++.+++.+++|++.++..+++++++.|+... ..
T Consensus 5 ~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rg-----a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~ 79 (152)
T d2esra1 5 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG-----MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC 79 (152)
T ss_dssp HHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT-----CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH
T ss_pred HHHHHHhhCCCCeEEEcCCccCHHHHHHHHhC-----cceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc
Confidence 33344433457899999999999998777652 2499999999999999999999999988999999998763 23
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHH--HcccCCcEEEEE
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV--RVLKPGGVGVVW 236 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~ 236 (293)
..++||+|+++|||..- .....+..+. +.|+|||.+++-
T Consensus 80 ~~~~fDiIf~DPPy~~~-------------~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 80 LTGRFDLVFLDPPYAKE-------------TIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp BCSCEEEEEECCSSHHH-------------HHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cccccceeEechhhccc-------------hHHHHHHHHHHCCCcCCCeEEEEE
Confidence 46789999999998643 2334455444 579999999873
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.55 E-value=9.7e-14 Score=115.79 Aligned_cols=146 Identities=16% Similarity=0.265 Sum_probs=111.4
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
...+++.........+|||||||+|..+..++++.| ..+++..|+ |..+ +..+..+++++..+|+.+
T Consensus 69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P----~l~~~v~Dl-p~vi-------~~~~~~~ri~~~~gd~~~- 135 (244)
T d1fp1d2 69 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP----LIKGINFDL-PQVI-------ENAPPLSGIEHVGGDMFA- 135 (244)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHH-------TTCCCCTTEEEEECCTTT-
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCC----CCeEEEecc-hhhh-------hccCCCCCeEEecCCccc-
Confidence 344555554345667999999999999999999988 569999998 4433 233445789999999986
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-----------------------
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----------------------- 239 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------------- 239 (293)
+.+ ..|++++..++|..+ +++...+++++++.|+|||++++++..
T Consensus 136 ~~p--~~D~~~l~~vLh~~~----------de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~ 203 (244)
T d1fp1d2 136 SVP--QGDAMILKAVCHNWS----------DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI 203 (244)
T ss_dssp CCC--CEEEEEEESSGGGSC----------HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH
T ss_pred ccc--cceEEEEehhhhhCC----------HHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHh
Confidence 333 359999999999988 447788999999999999999986531
Q ss_pred -------CchHHHHHHHHcCCcceEEeeeeccceecceeeeeec
Q 022698 240 -------HVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 240 -------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
+.+++.++++++||+.++++....+.. .++.++|
T Consensus 204 ~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~---~viE~~K 244 (244)
T d1fp1d2 204 TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSL---GVMEFYK 244 (244)
T ss_dssp HHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTE---EEEEEEC
T ss_pred hCCCcCCCHHHHHHHHHHcCCCceEEEecCCCCE---EEEEEeC
Confidence 135789999999999999875444433 4666654
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=3.2e-14 Score=119.78 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=97.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.+++.+++.. .++|+++|+|+.+++.+++|++.+++.++++++++|+.+++ ..+.||.|+
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~-----~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii 179 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYG-----KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRIL 179 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHT-----CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEE
T ss_pred CCccEEEECcceEcHHHHHHHHhC-----CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEE
Confidence 468899999999999999988762 35999999999999999999999999889999999999875 357899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--------CchHHHHHHHHcCCcce
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--------HVPEYVRRLQELKMEDI 256 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--------~~~~~~~~l~~~gf~~~ 256 (293)
+++|... ..+++.+.+.|++||++.+++.. ..+...+..+..||...
T Consensus 180 ~~~p~~~----------------~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 180 MGYVVRT----------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp ECCCSSG----------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred ECCCCch----------------HHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceE
Confidence 9876432 24667788899999998764321 12345566678898753
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.52 E-value=4.8e-14 Score=115.17 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=95.1
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. +.++.+|||||||+|..+..+++... .+|+++|+++..++.++++++..+. .++.+.++
T Consensus 62 s~P~~~a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~g-----~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~g 134 (215)
T d1jg1a_ 62 SAPHMVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-----TDVYTIERIPELVEFAKRNLERAGV-KNVHVILG 134 (215)
T ss_dssp CCHHHHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-----SCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEES
T ss_pred hhhhhHHHHHHhhc-cCccceEEEecCCCChhHHHHHHhhC-----ceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEEC
Confidence 45667777888774 68889999999999999998886642 4799999999999999999999887 56999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
|........++||.|++......++ ..+...|+|||++++
T Consensus 135 d~~~g~~~~~pfD~Iiv~~a~~~ip------------------~~l~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 135 DGSKGFPPKAPYDVIIVTAGAPKIP------------------EPLIEQLKIGGKLII 174 (215)
T ss_dssp CGGGCCGGGCCEEEEEECSBBSSCC------------------HHHHHTEEEEEEEEE
T ss_pred ccccCCcccCcceeEEeecccccCC------------------HHHHHhcCCCCEEEE
Confidence 9987655578899999998888776 225668999999987
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.5e-14 Score=126.21 Aligned_cols=122 Identities=19% Similarity=0.193 Sum_probs=95.9
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-------CC-C
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-------GV-Q 169 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-------~~-~ 169 (293)
........+++.+. +.++.+|||+|||+|..+..+++..+ ..+++|+|+|+.+++.|+++.+.. |. .
T Consensus 135 ~~~~~~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~----~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~ 209 (328)
T d1nw3a_ 135 TSFDLVAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATN----CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH 209 (328)
T ss_dssp CCHHHHHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCC----CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhC----CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccC
Confidence 45667778888774 67889999999999999999987754 358999999999999998876542 22 2
Q ss_pred CceEEEEcCCCCCCCCCCc--ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 170 EYVTAREGDVRSLPFGDNY--FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 170 ~~v~~~~~d~~~~~~~~~~--fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.++.|+++|+.+.++.+.. .|+|+++... +.+ +....++++.+.|||||+++...
T Consensus 210 ~~i~~~~gd~~~~~~~~~~~~advi~~~~~~-f~~------------~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 210 AEYTLERGDFLSEEWRERIANTSVIFVNNFA-FGP------------EVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCSEEEECCTT-TCH------------HHHHHHHHHHTTCCTTCEEEESS
T ss_pred CceEEEECcccccccccccCcceEEEEccee-cch------------HHHHHHHHHHHhCCCCcEEEEec
Confidence 4699999999987654433 4777776544 445 77889999999999999998754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.51 E-value=4.6e-14 Score=116.09 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=94.7
Q ss_pred chHHHHHHHHHhcC-CCCCCCeEEEEcCCCChHHHHHHHHhhhcC--CCcEEEEEeCCHHHHHHHHHHHHhcCC----CC
Q 022698 98 LHYDMAQRMVGSVN-DWSTVKTALDIGCGRGILLNAVATQFKKTG--SLGRVVGLDCKKRTTLSTLRTAKMEGV----QE 170 (293)
Q Consensus 98 ~~~~~~~~l~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~--~~~~v~~vDis~~~l~~a~~~~~~~~~----~~ 170 (293)
..+.+...+++.+. ++.++.+|||||||+|..+..+++.....| ...+|+++|+++++++.+++|....+. ..
T Consensus 62 s~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~ 141 (223)
T d1r18a_ 62 SAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG 141 (223)
T ss_dssp CCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCcc
Confidence 34566777887764 467889999999999999999988776433 134899999999999999998654321 14
Q ss_pred ceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 171 YVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 171 ~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
++.+..+|..+...+.++||.|++.......+ ..+.+.|||||++++
T Consensus 142 nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p------------------~~l~~~Lk~gG~lV~ 188 (223)
T d1r18a_ 142 QLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP------------------TELINQLASGGRLIV 188 (223)
T ss_dssp SEEEEESCGGGCCGGGCSEEEEEECSCBSSCC------------------HHHHHTEEEEEEEEE
T ss_pred EEEEEecccccccccccceeeEEEEeechhch------------------HHHHHhcCCCcEEEE
Confidence 69999999987655567899999998887776 235789999999987
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=2.8e-14 Score=124.55 Aligned_cols=106 Identities=23% Similarity=0.242 Sum_probs=87.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||||||+|.++..+++.. ..+|+++|.|+ +++.|+++.+.++..+++.++.+|+.++++++++||+|+
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~G-----a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~ 110 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHG-----AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIII 110 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTC-----CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC-----CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEE
Confidence 357899999999999998777652 24899999996 678899999999988899999999999888888999999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
+....+.+..+ .....++..+.++|||||+++
T Consensus 111 se~~~~~~~~e---------~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 111 SEWMGYFLLYE---------SMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp ECCCBTTBSTT---------CCHHHHHHHHHHHEEEEEEEE
T ss_pred EEecceeeccc---------hhHHHHHHHHHhccCCCeEEE
Confidence 98776555421 145678888899999999986
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=9.4e-14 Score=120.27 Aligned_cols=108 Identities=22% Similarity=0.247 Sum_probs=86.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++++|||||||+|.++..+++..+ .+|+++|.|+.+. .++++...++..+++.++.+|+.+++.+..+||+|
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-----~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~I 106 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-----KKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVI 106 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-----SEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEE
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-----CEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcCccccceEE
Confidence 34678999999999999988877522 4899999999875 46667777777788999999999988777899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
++....+....+ ..+..++....+.|||||.++-
T Consensus 107 vse~~~~~~~~e---------~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 107 ISEWMGYFLLFE---------SMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EECCCBTTBTTT---------CHHHHHHHHHHHHEEEEEEEES
T ss_pred EEeeeeeecccc---------cccHHHHHHHHhcCCCCcEEec
Confidence 998766654311 1456677778899999999873
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=3.3e-14 Score=123.42 Aligned_cols=105 Identities=24% Similarity=0.295 Sum_probs=86.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++++|||||||+|.++..+++.. ..+|+|+|.|+. ...++++.+.+++.+++.++++|+.+++.+.++||+|++
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~G-----a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs 106 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAG-----ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIIS 106 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-----CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred CcCEEEEEecCCcHHHHHHHHhC-----CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEee
Confidence 57899999999999988777652 248999999986 577788888899888999999999998887889999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
....+.+..+ .....++..+.++|||||.++
T Consensus 107 ~~~~~~l~~e---------~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 107 EWMGYCLFYE---------SMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp CCCBBTBTBT---------CCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeeeeeccH---------HHHHHHHHHHHhcCCCCeEEE
Confidence 8666554311 145678899999999999987
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=1.2e-14 Score=114.93 Aligned_cols=105 Identities=18% Similarity=0.065 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC--CCCCCCcccE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS--LPFGDNYFDV 191 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~ 191 (293)
..+.+|||+|||+|.+++.++.+ +++++++|.|+.+++.+++|++.+++..++.....|... ......+||+
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~------ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~ 113 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASE------GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTV 113 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHT------TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEeccccchhhhhhhhc------cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccce
Confidence 45679999999999999877765 468999999999999999999999987655554444321 1134568999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|+++|||..-- ......++. ..+|+|||.+++.
T Consensus 114 If~DPPY~~~~----------~~~l~~l~~--~~ll~~~g~ivie 146 (171)
T d1ws6a1 114 AFMAPPYAMDL----------AALFGELLA--SGLVEAGGLYVLQ 146 (171)
T ss_dssp EEECCCTTSCT----------THHHHHHHH--HTCEEEEEEEEEE
T ss_pred eEEccccccCH----------HHHHHHHHH--cCCcCCCeEEEEE
Confidence 99999986421 011222222 3589999988874
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.48 E-value=7.4e-14 Score=119.57 Aligned_cols=124 Identities=13% Similarity=0.095 Sum_probs=91.0
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEEcCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE-YVTAREGDVRSLP 183 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~-~v~~~~~d~~~~~ 183 (293)
++.+.+.....+.+|||++||+|.+++.++.. +++|++||.|+.+++.|++|++.+++.+ +++|++.|+.+.-
T Consensus 122 ~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~------GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l 195 (309)
T d2igta1 122 WLKNAVETADRPLKVLNLFGYTGVASLVAAAA------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI 195 (309)
T ss_dssp HHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH
T ss_pred HHHHHHhhccCCCeEEEecCCCcHHHHHHHhC------CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhH
Confidence 33333333445779999999999999988764 4699999999999999999999998764 6999999997631
Q ss_pred ----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 184 ----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 184 ----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
....+||+||++||........ ....-.++...++..+.++|+|||.+++.
T Consensus 196 ~~~~~~~~~fD~IilDPP~f~~~~~~--~~~~~~~~~~~l~~~~~~ll~~~g~~ll~ 250 (309)
T d2igta1 196 QREERRGSTYDIILTDPPKFGRGTHG--EVWQLFDHLPLMLDICREILSPKALGLVL 250 (309)
T ss_dssp HHHHHHTCCBSEEEECCCSEEECTTC--CEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred HHHhhcCCCCCEEEECCCcccccccc--hhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 2346899999999854322111 11111235567788889999999975553
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.45 E-value=2.6e-13 Score=117.38 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=97.4
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSL 182 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~ 182 (293)
.+++..+ .++.+|||++||+|.++++++..- ..+|+++|+|+.+++.+++|++.+++. .++++++.|+.+.
T Consensus 136 ~~l~~~~---~~g~~VLdlf~~~G~~sl~aa~~g-----a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~ 207 (317)
T d2b78a2 136 NELINGS---AAGKTVLNLFSYTAAFSVAAAMGG-----AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY 207 (317)
T ss_dssp HHHHHTT---TBTCEEEEETCTTTHHHHHHHHTT-----BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH
T ss_pred HHHHHHh---hCCCceeecCCCCcHHHHHHHhCC-----CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHH
Confidence 4455443 457899999999999998776531 248999999999999999999999985 5799999999653
Q ss_pred ----CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC---chHHHHHH
Q 022698 183 ----PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH---VPEYVRRL 248 (293)
Q Consensus 183 ----~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~l 248 (293)
.....+||+|+++||....... ..+....+..++++.+.++|+|||.|+++.+.. ..++.+.+
T Consensus 208 l~~~~~~~~~fD~Ii~DPP~f~~~~~---~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v 277 (317)
T d2b78a2 208 FKYARRHHLTYDIIIIDPPSFARNKK---EVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQI 277 (317)
T ss_dssp HHHHHHTTCCEEEEEECCCCC--------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHhhcCCCCEEEEcChhhccchh---HHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHH
Confidence 1234689999999885332211 111223367789999999999999999966643 34444444
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.41 E-value=4.6e-13 Score=106.71 Aligned_cols=121 Identities=16% Similarity=0.150 Sum_probs=94.5
Q ss_pred cchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
|....+.+.+...+.+...+.+|||++||+|.+++..+.+- ..+|+++|.|+.+++.+++|++..+..+++++++
T Consensus 23 Pt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srG-----a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~ 97 (182)
T d2fhpa1 23 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG-----MDKSICIEKNFAALKVIKENIAITKEPEKFEVRK 97 (182)
T ss_dssp CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred cCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecc-----hhHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Confidence 34455666666666655567899999999999999888763 2489999999999999999999988877899999
Q ss_pred cCCCCCC----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHH--HcccCCcEEEE
Q 022698 177 GDVRSLP----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV--RVLKPGGVGVV 235 (293)
Q Consensus 177 ~d~~~~~----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~ 235 (293)
.|+...- ....+||+|+++|||..- +....+..+. ..|+|+|.+++
T Consensus 98 ~D~~~~l~~~~~~~~~fDlIflDPPY~~~-------------~~~~~l~~i~~~~~L~~~giIi~ 149 (182)
T d2fhpa1 98 MDANRALEQFYEEKLQFDLVLLDPPYAKQ-------------EIVSQLEKMLERQLLTNEAVIVC 149 (182)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCGGGC-------------CHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ccchhhhhhhcccCCCcceEEechhhhhh-------------HHHHHHHHHHHCCCCCCCEEEEE
Confidence 9986531 234579999999998643 3345566665 47999998876
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=1e-12 Score=106.39 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=65.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+.+|||+|||+|.+++.++... ..+|+|+|+|+.+++.+++|++.++.. ..+...|+..+ .++||+|++
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g-----~~~v~~vdi~~~~~~~a~~N~~~~~~~--~~~~~~d~~~~---~~~fD~Vi~ 115 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLG-----AKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGDVSEF---NSRVDIVIM 115 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHTGGGTTS--EEEEESCGGGC---CCCCSEEEE
T ss_pred CCCEEEECcCcchHHHHHHHHcC-----CCEEEEEcCcHHHHHHHHHHHHHcCCC--ceEEECchhhh---CCcCcEEEE
Confidence 46799999999999998776541 258999999999999999999988754 78999998775 467999999
Q ss_pred cchhhhh
Q 022698 195 AAFFHTV 201 (293)
Q Consensus 195 ~~~~~~~ 201 (293)
||||...
T Consensus 116 nPP~~~~ 122 (201)
T d1wy7a1 116 NPPFGSQ 122 (201)
T ss_dssp CCCCSSS
T ss_pred cCccccc
Confidence 9998654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.39 E-value=1.9e-12 Score=114.80 Aligned_cols=122 Identities=12% Similarity=0.040 Sum_probs=90.2
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC-------C-C
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG-------V-Q 169 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~-------~-~ 169 (293)
+...++..+++.+. +.++.+|||||||+|..+..+++..+ .++++|+|+|+.+++.|+++++..+ . .
T Consensus 200 l~~~~i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g----~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~ 274 (406)
T d1u2za_ 200 LLPNFLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECG----CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRL 274 (406)
T ss_dssp BCHHHHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHC----CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred CCHHHHHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcC----CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 45667888888874 68889999999999999999998876 3589999999999999999876532 1 1
Q ss_pred CceEE-EEcCCCCCCC---CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 170 EYVTA-REGDVRSLPF---GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 170 ~~v~~-~~~d~~~~~~---~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
..+.+ ..++....+. .-..+|+|+++.. .+.+ +....++++.+.|||||+++..+
T Consensus 275 ~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~-~f~~------------~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 275 NNVEFSLKKSFVDNNRVAELIPQCDVILVNNF-LFDE------------DLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp CCEEEEESSCSTTCHHHHHHGGGCSEEEECCT-TCCH------------HHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccceeeeeechhhccccccccccceEEEEecc-cCch------------HHHHHHHHHHHhcCCCcEEEEec
Confidence 11233 3344433221 1135788888753 3444 78899999999999999998854
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.38 E-value=1.1e-12 Score=105.21 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=59.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+++|||+|||+|.+++.++..- ..+|+++|+++.+++.|++|+. ++.+.++|+.+++ ++||+|++
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~g-----a~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l~---~~fD~Vi~ 113 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLG-----AESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWIM 113 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTT-----BSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHcC-----CCcccccccCHHHHHHHHHccc------cccEEEEehhhcC---CcceEEEe
Confidence 47899999999999987766542 2489999999999999999853 3789999998753 68999999
Q ss_pred cchhhh
Q 022698 195 AAFFHT 200 (293)
Q Consensus 195 ~~~~~~ 200 (293)
||||..
T Consensus 114 NPPfg~ 119 (197)
T d1ne2a_ 114 NPPFGS 119 (197)
T ss_dssp CCCC--
T ss_pred Ccccch
Confidence 999854
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=1.8e-12 Score=105.90 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-----CCCCc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-----FGDNY 188 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~~ 188 (293)
.+.+|||+|||+|..++.+++.++. +++++++|+++.+.+.|+++++..|+.++++++.+|..+. + ...++
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~---~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~ 132 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQP---GARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 132 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCT---TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred CCCEEEEEccCchhHHHHHHHhCCC---ccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccc
Confidence 4569999999999999999987754 4699999999999999999999999989999999998753 2 23467
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCchHHHHHHHHc
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVPEYVRRLQEL 251 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~l~~~ 251 (293)
||+|+....-... .....+.+..++|+|||++++=+ ....+++.+.+++.
T Consensus 133 ~D~ifiD~~~~~~-------------~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~~ 184 (214)
T d2cl5a1 133 LDMVFLDHWKDRY-------------LPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGS 184 (214)
T ss_dssp EEEEEECSCGGGH-------------HHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHHC
T ss_pred cceeeeccccccc-------------ccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhcc
Confidence 9999986332211 22335667788999999887733 33456777777654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.36 E-value=1.4e-12 Score=104.57 Aligned_cols=132 Identities=19% Similarity=0.176 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+++.+. ..++..+||++||+|..+..+++.++ +++++|+|.++.|++.++++++..+ +++.+++.++.+
T Consensus 11 ll~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~----~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~ 83 (192)
T d1m6ya2 11 MVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCP----GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYRE 83 (192)
T ss_dssp THHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCT----TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGG
T ss_pred HHHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCC----CCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhh
Confidence 4455666664 46788999999999999999999876 4699999999999999999988764 569999998876
Q ss_pred CC-----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchH
Q 022698 182 LP-----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPE 243 (293)
Q Consensus 182 ~~-----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 243 (293)
+. +..++||.|+....+...+.+...+.+. .....+..+.++|+|||.++++++...++
T Consensus 84 ~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~---~~~~~L~~a~~~Lk~gG~l~ii~f~s~Ed 147 (192)
T d1m6ya2 84 ADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELE---NLKEFLKKAEDLLNPGGRIVVISFHSLED 147 (192)
T ss_dssp HHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHH---HHHHHHHHGGGGEEEEEEEEEEESSHHHH
T ss_pred HHHHHHHcCCCCcceeeeccchhHhhhhhhhccch---hHHHHHHHHHHhcCCCCeeeeeccccHHH
Confidence 43 3357899999875553322222222332 55678899999999999999988766554
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=1.1e-12 Score=104.57 Aligned_cols=103 Identities=10% Similarity=0.034 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-CCCCCcccEEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-PFGDNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iv 193 (293)
.+.+|||++||+|.+++.++.+-. .+|+.+|.++.+++.+++|++..+. .++.++..|+.+. .....+||+|+
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa-----~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf 116 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYA-----AGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVF 116 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-----SEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred chhhhhhhhccccceeeeEEecCc-----ceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccccccccccccCEEE
Confidence 467999999999999998877632 4899999999999999999998776 4588999998753 23457899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHH--HcccCCcEEEEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMV--RVLKPGGVGVVW 236 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~ 236 (293)
++|||..- .....+..+. ..|+++|.+++-
T Consensus 117 ~DPPY~~~-------------~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 117 VDPPFRRG-------------LLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp ECCSSSTT-------------THHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EcCccccc-------------hHHHHHHHHHHCCCCCCCeEEEEE
Confidence 99998642 2334555554 469999998883
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.32 E-value=1.9e-11 Score=101.65 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=98.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
...+|+|||||+|..+..+++..| ..+++..|. ++.++ ..+..++++++.+|+.+. .+ .+|++++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P----~l~~~v~Dl-p~vi~-------~~~~~~rv~~~~gD~f~~-~p--~aD~~~l 144 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFP----KLKCIVFDR-PQVVE-------NLSGSNNLTYVGGDMFTS-IP--NADAVLL 144 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHT-------TCCCBTTEEEEECCTTTC-CC--CCSEEEE
T ss_pred CceEEEEecCCccHHHHHHHHhCC----CCeEEEecC-HHHHH-------hCcccCceEEEecCcccC-CC--CCcEEEE
Confidence 456899999999999999999988 569999998 44332 334457899999999873 32 5799999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC---cEEEEEcCC-----------------------------Cch
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG---GVGVVWDLL-----------------------------HVP 242 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~-----------------------------~~~ 242 (293)
..++|..+ +++...+|+++++.|+|| |++++++.. +.+
T Consensus 145 ~~vLHdw~----------d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~ 214 (244)
T d1fp2a2 145 KYILHNWT----------DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEE 214 (244)
T ss_dssp ESCGGGSC----------HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHH
T ss_pred EeecccCC----------hHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHH
Confidence 99999988 446778999999999998 777775421 235
Q ss_pred HHHHHHHHcCCcceEEeee
Q 022698 243 EYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 243 ~~~~~l~~~gf~~~~~~~~ 261 (293)
++.++++++||+.++++..
T Consensus 215 e~~~ll~~AGf~~~~i~~~ 233 (244)
T d1fp2a2 215 EWKKLFIEAGFQHYKISPL 233 (244)
T ss_dssp HHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHcCCceEEEEEC
Confidence 8999999999999988753
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.32 E-value=2.1e-11 Score=101.45 Aligned_cols=132 Identities=14% Similarity=0.224 Sum_probs=100.6
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+++......+..+|+|||||+|..+..+++..| +.++++.|+.+. + +.....+++++...|+.+ +.
T Consensus 71 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P----~l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~d~~~-~~ 137 (243)
T d1kyza2 71 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYP----TIKGINFDLPHV-I-------EDAPSYPGVEHVGGDMFV-SI 137 (243)
T ss_dssp HHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCT----TSEEEEEECTTT-T-------TTCCCCTTEEEEECCTTT-CC
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCC----CCeEEEcccHHh-h-------hhcccCCceEEecccccc-cC
Confidence 4444443334457899999999999999999988 569999999553 2 233334679999999976 34
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------------------
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------- 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------- 239 (293)
+. .|+++....+|..+ .++...+++++++.|+|||++++++..
T Consensus 138 P~--ad~~~l~~vlh~~~----------d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~ 205 (243)
T d1kyza2 138 PK--ADAVFMKWICHDWS----------DEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHN 205 (243)
T ss_dssp CC--CSCEECSSSSTTSC----------HHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHC
T ss_pred CC--cceEEEEEEeecCC----------HHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhC
Confidence 33 57788888888877 447788999999999999998885421
Q ss_pred ------CchHHHHHHHHcCCcceEEeee
Q 022698 240 ------HVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 240 ------~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
+..++.++++++||+.++++..
T Consensus 206 ~~g~ert~~e~~~ll~~AGf~~vkv~~~ 233 (243)
T d1kyza2 206 PGGKERTQKEFEDLAKGAGFQGFKVHCN 233 (243)
T ss_dssp SSCCCEEHHHHHHHHHHHCCSCEEEEEE
T ss_pred CCCCcCCHHHHHHHHHHcCCCcEEEEEe
Confidence 1247999999999999988754
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.30 E-value=1.9e-11 Score=98.15 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhh----cCCCcEEEEEeCCHHHHHHHHHHH------------------HhcC----
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKK----TGSLGRVVGLDCKKRTTLSTLRTA------------------KMEG---- 167 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~----~~~~~~v~~vDis~~~l~~a~~~~------------------~~~~---- 167 (293)
.+..+|+++|||+|.-+..++..+.+ .+...+++|+|+|+.+++.|++.. ...+
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 44569999999999977666554332 222358999999999999887431 1100
Q ss_pred --------CCCceEEEEcCCCCCC-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 168 --------VQEYVTAREGDVRSLP-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 168 --------~~~~v~~~~~d~~~~~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+...+.+...+..... .+.++||+|+|.+++++++ .+...++++++++.|+|||.|++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~----------~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD----------KTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC----------HHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcC----------HHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0122455556555432 3357899999999999987 346678999999999999998873
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=1.5e-11 Score=108.20 Aligned_cols=152 Identities=20% Similarity=0.238 Sum_probs=110.0
Q ss_pred HhhhcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH
Q 022698 84 LFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA 163 (293)
Q Consensus 84 ~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~ 163 (293)
+.+....||..+....+.+.+.+++.+. ..++.+|||+.||+|.+++.|++. ..+|+|+|+++.+++.|++|+
T Consensus 182 ~~i~p~sFfQ~N~~~~e~l~~~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~------~~~V~gvE~~~~ai~~A~~na 254 (358)
T d1uwva2 182 LTFSPRDFIQVNAGVNQKMVARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ------AASVVGVEGVPALVEKGQQNA 254 (358)
T ss_dssp EECCSSSCCCSBHHHHHHHHHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT------SSEEEEEESCHHHHHHHHHHH
T ss_pred EEECCchhhccchhhhhHHHHHHHHhhc-cCCCceEEEecccccccchhcccc------ccEEEeccCcHHHHHHHHHhH
Confidence 4445566777666677778888877774 456789999999999999999876 359999999999999999999
Q ss_pred HhcCCCCceEEEEcCCCCCC----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-
Q 022698 164 KMEGVQEYVTAREGDVRSLP----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL- 238 (293)
Q Consensus 164 ~~~~~~~~v~~~~~d~~~~~----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~- 238 (293)
+.+++ .++.|+.+|..+.. ....++|+|+.+||=.-.. ..++.+.+ ++|.-++|+++.
T Consensus 255 ~~n~i-~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~---------------~~~~~l~~-~~~~~ivYVSCnp 317 (358)
T d1uwva2 255 RLNGL-QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA---------------GVMQQIIK-LEPIRIVYVSCNP 317 (358)
T ss_dssp HHTTC-CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCH---------------HHHHHHHH-HCCSEEEEEESCH
T ss_pred Hhccc-ccceeeecchhhhhhhhhhhhccCceEEeCCCCccHH---------------HHHHHHHH-cCCCEEEEEeCCH
Confidence 99998 46999999987632 2246799999998854332 34555554 467766666432
Q ss_pred CCchHHHHHHHHcCCcceEEe
Q 022698 239 LHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 239 ~~~~~~~~~l~~~gf~~~~~~ 259 (293)
.+...-...|.+.||+..++.
T Consensus 318 ~TlaRDl~~l~~~gy~l~~i~ 338 (358)
T d1uwva2 318 ATLARDSEALLKAGYTIARLA 338 (358)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEeEEE
Confidence 122223345678899866554
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=6.7e-12 Score=102.60 Aligned_cols=108 Identities=22% Similarity=0.191 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-----CCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-----FGDN 187 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~ 187 (293)
...++|||||||+|..++.++..+++ +++++++|+++...+.|+++++..+..++++++.+|+.+. + ...+
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~---~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~ 134 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPA---DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG 134 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCT---TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCC---CceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccC
Confidence 45679999999999999999988865 3599999999999999999999999999999999998652 1 2356
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
+||+|+...--. .....++.+.++|+|||.+++-+..
T Consensus 135 ~fD~ifiD~dk~---------------~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 135 TFDVAVVDADKE---------------NCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp CEEEEEECSCST---------------THHHHHHHHHHHEEEEEEEEEECCS
T ss_pred CccEEEEeCCHH---------------HHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 899999864322 4456778888999999999995543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.21 E-value=3.4e-11 Score=104.59 Aligned_cols=135 Identities=18% Similarity=0.126 Sum_probs=95.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcC-CCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTG-SLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
..++.+|||.|||+|.++..+..++...+ ...+++|+|+++.++..|+.++...+.. ..+...|.... ....+||+
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~--~~~~~~d~~~~-~~~~~fD~ 191 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTLLHQDGLAN-LLVDPVDV 191 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCTTSC-CCCCCEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--hhhhccccccc-cccccccc
Confidence 35567899999999999999988775432 2358999999999999999998877653 66777776653 34578999
Q ss_pred EEecchhhhhcccc--------CcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------CCchHHHHHHHHcC
Q 022698 192 VVSAAFFHTVGKEY--------GHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------LHVPEYVRRLQELK 252 (293)
Q Consensus 192 Iv~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------~~~~~~~~~l~~~g 252 (293)
|++||||....... ...+. ......++..+.+.|+|||++.++-. .....+++.+.+.+
T Consensus 192 vi~NPPy~~~~~~~~~~~~~~~~~~~~--~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~ 264 (328)
T d2f8la1 192 VISDLPVGYYPDDENAKTFELCREEGH--SFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNG 264 (328)
T ss_dssp EEEECCCSEESCHHHHTTSTTCCSSSC--EEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHE
T ss_pred cccCCCCCCCccchhhhhcchhcccCc--chHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCC
Confidence 99999985432110 00000 01234589999999999998876432 22345666666654
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.16 E-value=1.8e-11 Score=100.48 Aligned_cols=106 Identities=22% Similarity=0.265 Sum_probs=88.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C------CCCC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P------FGDN 187 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~------~~~~ 187 (293)
...+|||+||++|..++.++..+++ +++++.+|.+++..+.|+++++..|..++++++.+|+.+. + ...+
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~---~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~ 135 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPE---DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG 135 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCT---TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred CCCcEEEecchhhhhHHHHHhhCCC---CcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCC
Confidence 4679999999999999999998875 4699999999999999999999999999999999998652 1 1246
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+||+|+...--. .....++.+.++|+|||.+++-+.
T Consensus 136 ~fD~iFiDa~k~---------------~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 136 SYDFIFVDADKD---------------NYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp CBSEEEECSCST---------------THHHHHHHHHHHBCTTCCEEEETT
T ss_pred ceeEEEeccchh---------------hhHHHHHHHHhhcCCCcEEEEccC
Confidence 899999864221 455788888999999999998554
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.10 E-value=7.7e-11 Score=93.66 Aligned_cols=103 Identities=18% Similarity=0.128 Sum_probs=80.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEEcCCCCC---CCCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE-YVTAREGDVRSL---PFGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~-~v~~~~~d~~~~---~~~~~~fD 190 (293)
.+.+|||+.||||.+++..+.+- ...++.+|.+..++...++|++..+..+ ...+...|+.+. .....+||
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRG-----A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fD 117 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQ-----AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFD 117 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-----CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEE
T ss_pred ccceEeecccCccceeeeeeeec-----ceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCccc
Confidence 45699999999999999998763 2599999999999999999999887644 466677765432 22345799
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHH--HcccCCcEEEE
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV--RVLKPGGVGVV 235 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~ 235 (293)
+|++.|||..- .....+..+. .+|+++|.+++
T Consensus 118 lIFlDPPY~~~-------------~~~~~l~~l~~~~~L~~~~liii 151 (183)
T d2ifta1 118 VVFLDPPFHFN-------------LAEQAISLLCENNWLKPNALIYV 151 (183)
T ss_dssp EEEECCCSSSC-------------HHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEechhHhhh-------------hHHHHHHHHHHhCCcCCCcEEEE
Confidence 99999999652 3445666665 47999999888
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.07 E-value=1.4e-09 Score=89.39 Aligned_cols=95 Identities=9% Similarity=0.151 Sum_probs=77.1
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
......+.+++.+. ..++.+|||||||+|.+|..+++. +.+++++|+++.+++.++++.... +++.++.+
T Consensus 5 ~d~~i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~------~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~ 74 (235)
T d1qama_ 5 TSKHNIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQR------CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNK 74 (235)
T ss_dssp CCHHHHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECC
T ss_pred CCHHHHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhC------cCceEEEeeccchHHHHHHHhhcc---cchhhhhh
Confidence 44556777777764 567889999999999999999976 359999999999999988876543 56999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhc
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~ 202 (293)
|+.+.+++......|++|.||+-..
T Consensus 75 D~l~~~~~~~~~~~vv~NLPYnIss 99 (235)
T d1qama_ 75 DILQFKFPKNQSYKIFGNIPYNIST 99 (235)
T ss_dssp CGGGCCCCSSCCCEEEEECCGGGHH
T ss_pred hhhhccccccccceeeeeehhhhhH
Confidence 9998876655566789999997654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.99 E-value=1.9e-09 Score=92.47 Aligned_cols=141 Identities=19% Similarity=0.128 Sum_probs=100.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
...++.+|||+++|.|.-+..++..... .+.+++.|+++.-+..+++++++.+.. ++.....|...++....+||.
T Consensus 113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~---~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~~~~~~~fD~ 188 (313)
T d1ixka_ 113 DPKPGEIVADMAAAPGGKTSYLAQLMRN---DGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDK 188 (313)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTT---CSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEE
T ss_pred cCCccceeeecccchhhhhHhhhhhccc---ccceeeeccCHHHHHHHHHHHHHHHhh-ccccccccccccccccccccE
Confidence 4577889999999999999999988764 358999999999999999999999874 477777777766555678999
Q ss_pred EEecchhhhhcc---ccC---cc----hhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc----hHH-HHHHHHcCCcce
Q 022698 192 VVSAAFFHTVGK---EYG---HR----TVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV----PEY-VRRLQELKMEDI 256 (293)
Q Consensus 192 Iv~~~~~~~~~~---~~~---~~----~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~-~~~l~~~gf~~~ 256 (293)
|++.+|...... .+. .. ...-..-..+++.++.+.|||||.++.+.+.-. +++ ...+++.+|+.+
T Consensus 189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~~~ 268 (313)
T d1ixka_ 189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELL 268 (313)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEE
T ss_pred EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCEEe
Confidence 999877543321 110 00 111112334688899999999999988766542 333 344455555544
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.98 E-value=6.4e-11 Score=98.21 Aligned_cols=100 Identities=16% Similarity=0.200 Sum_probs=79.1
Q ss_pred ccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCce
Q 022698 93 YSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYV 172 (293)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v 172 (293)
+.++-......+.+++.+. ..++.+|||||||+|.+|..|++. +.+|+++|+++.+++.++++... .+++
T Consensus 8 GQnFL~d~~ii~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~------~~~v~aIE~D~~l~~~l~~~~~~---~~n~ 77 (245)
T d1yuba_ 8 SQNFLTSEKVLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKI------SKQVTSIELDSHLFNLSSEKLKL---NTRV 77 (245)
T ss_dssp CCCBCCCTTTHHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHH------SSEEEESSSSCSSSSSSSCTTTT---CSEE
T ss_pred CCcccCCHHHHHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhh------cCceeEeeecccchhhhhhhhhh---ccch
Confidence 4444455556777887764 567789999999999999999876 35999999999988777655432 2569
Q ss_pred EEEEcCCCCCCCCCCcccEEEecchhhhhc
Q 022698 173 TAREGDVRSLPFGDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 173 ~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~ 202 (293)
+++.+|+.+.+++...++.|++|.||+...
T Consensus 78 ~ii~~D~l~~~~~~~~~~~vv~NLPY~Ist 107 (245)
T d1yuba_ 78 TLIHQDILQFQFPNKQRYKIVGNIPYHLST 107 (245)
T ss_dssp EECCSCCTTTTCCCSSEEEEEEECCSSSCH
T ss_pred hhhhhhhhccccccceeeeEeeeeehhhhH
Confidence 999999999887777888999999997654
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.97 E-value=1.3e-09 Score=88.65 Aligned_cols=138 Identities=20% Similarity=0.186 Sum_probs=91.1
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
.+++.+++.+. ..++.+|||.|||+|.++..+.+..+. ...++|+|+++.++.. ..+..+..+|..
T Consensus 6 ~i~~~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~---~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~ 71 (223)
T d2ih2a1 6 EVVDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGT---AYRFVGVEIDPKALDL----------PPWAEGILADFL 71 (223)
T ss_dssp HHHHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCS---CSEEEEEESCTTTCCC----------CTTEEEEESCGG
T ss_pred HHHHHHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccc---cceEEeeecCHHHHhh----------cccceeeeeehh
Confidence 35666666664 456789999999999999888776653 3589999999874322 223567788876
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcc-----hhhh------------HHHHHHHHHHHHHcccCCcEEEEEcC-----
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHR-----TVEA------------AAERMRVLGEMVRVLKPGGVGVVWDL----- 238 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~-----~~~~------------~~~~~~~l~~~~~~LkpgG~l~~~~~----- 238 (293)
... ...+||+|++|+|+.......... .... .+-...++..+.+.|+|||.+.++-.
T Consensus 72 ~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~ 150 (223)
T d2ih2a1 72 LWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLV 150 (223)
T ss_dssp GCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGT
T ss_pred ccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeecc
Confidence 643 356899999999986543211110 0000 00124578888999999999877432
Q ss_pred -CCchHHHHHHHHcCC
Q 022698 239 -LHVPEYVRRLQELKM 253 (293)
Q Consensus 239 -~~~~~~~~~l~~~gf 253 (293)
...+.+++.|.+.+.
T Consensus 151 ~~~~~~lR~~l~~~~~ 166 (223)
T d2ih2a1 151 LEDFALLREFLAREGK 166 (223)
T ss_dssp CGGGHHHHHHHHHHSE
T ss_pred CcchHHHHHHHHhcCC
Confidence 123456677766653
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.93 E-value=1.5e-09 Score=93.00 Aligned_cols=136 Identities=18% Similarity=0.117 Sum_probs=91.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc--C--CCCceEEEEcCCCCCC-CCCCc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--G--VQEYVTAREGDVRSLP-FGDNY 188 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--~--~~~~v~~~~~d~~~~~-~~~~~ 188 (293)
..+++||.||.|.|..+..+++..+ ..+|+++|+++..++.+++.+... + -.++++++.+|+.+.- ..+.+
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~----~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~ 151 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPT----VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEER 151 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT----CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCC
T ss_pred CCcceEEEeCCCchHHHHHHHhcCC----cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCc
Confidence 3467999999999999988876643 469999999999999999987432 1 2367999999998742 23568
Q ss_pred ccEEEecch--hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc---CCCchHHHHHH---HHcCCcceEEee
Q 022698 189 FDVVVSAAF--FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD---LLHVPEYVRRL---QELKMEDIRVSE 260 (293)
Q Consensus 189 fD~Iv~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~l---~~~gf~~~~~~~ 260 (293)
||+|++..+ +.... +.... --.++++.+.+.|+|||++++.. .....++...+ -+.-|..+....
T Consensus 152 yDvIi~D~~dp~~~~~--~~~~L-----~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~ 224 (312)
T d1uira_ 152 YDVVIIDLTDPVGEDN--PARLL-----YTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYK 224 (312)
T ss_dssp EEEEEEECCCCBSTTC--GGGGG-----SSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEE
T ss_pred ccEEEEeCCCcccccc--hhhhh-----hhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEE
Confidence 999997532 21100 00001 12579999999999999998722 12222332222 234588777754
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=5.9e-09 Score=83.78 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|+|+|||.|..++.++-..| ..+++.+|.+..-+...+.-....++ +++++++.++.+.. ...+||+|+|
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p----~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~-~~~~fD~V~s 138 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRP----EAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRVEEFP-SEPPFDGVIS 138 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCTTTSC-CCSCEEEEEC
T ss_pred cCCceeeeeccCCceeeehhhhcc----cceEEEEecchHHHHHHHHHHHHcCC-cceeeeccchhhhc-cccccceehh
Confidence 356899999999999999998877 46999999999999999999898887 46999999998864 3568999998
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
..+- ....+++-+...++++|.+++.--
T Consensus 139 RA~~----------------~~~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 139 RAFA----------------SLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp SCSS----------------SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred hhhc----------------CHHHHHHHHHHhcCCCcEEEEECC
Confidence 6542 345677888899999999988653
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=2.7e-08 Score=83.40 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=79.0
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+...+.+++.+. ..++..|||||+|.|.+|..|++. +.+++++|+++.+++..++.+......+++.++.+
T Consensus 5 ~d~~i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~------~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~ 77 (278)
T d1zq9a1 5 KNPLIINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEK------AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVG 77 (278)
T ss_dssp CCHHHHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHH------SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEES
T ss_pred CCHHHHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhc------CCcEEEEEEccchhHHHHHHHhhhccccchhhhHH
Confidence 44567777887764 567789999999999999999977 35999999999999999998877655577999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhc
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~ 202 (293)
|+....++ .++.||+|.||+...
T Consensus 78 D~l~~~~~--~~~~vV~NLPY~Iss 100 (278)
T d1zq9a1 78 DVLKTDLP--FFDTCVANLPYQISS 100 (278)
T ss_dssp CTTTSCCC--CCSEEEEECCGGGHH
T ss_pred HHhhhhhh--hhhhhhcchHHHHHH
Confidence 99886543 468999999997654
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=1.2e-08 Score=86.17 Aligned_cols=124 Identities=17% Similarity=0.127 Sum_probs=87.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CCCCccc
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FGDNYFD 190 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 190 (293)
...++.+|||+++|.|.-+..++.... +.+++++|+++..+...++++++.|... +.....|..... ...++||
T Consensus 99 ~~~~g~~vLD~CAaPGgKt~~la~l~~----~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~~~~~~~~~fd 173 (284)
T d1sqga2 99 APQNGEHILDLCAAPGGKTTHILEVAP----EAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPSQWCGEQQFD 173 (284)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCT----TCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTHHHHTTCCEE
T ss_pred CccccceeEeccCccccchhhhhhhhh----hhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccccchhccccccc
Confidence 456788999999999999999987644 3589999999999999999999998753 444444433211 2346799
Q ss_pred EEEecchhhhhc---cccCc-------chhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 191 VVVSAAFFHTVG---KEYGH-------RTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 191 ~Iv~~~~~~~~~---~~~~~-------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
.|++.+|..... ..+.. ....-..-..+++..+.+.|||||.|+.+.+..
T Consensus 174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 999987754332 11111 111111224568999999999999999876654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.84 E-value=9.5e-09 Score=91.95 Aligned_cols=151 Identities=20% Similarity=0.147 Sum_probs=102.0
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCC---------cEEEEEeCCHHHHHHHHHHHHhcCCC-
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSL---------GRVVGLDCKKRTTLSTLRTAKMEGVQ- 169 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~---------~~v~~vDis~~~l~~a~~~~~~~~~~- 169 (293)
..+++.+++.+. ..++.+|+|.+||+|.+...+.+++...+.. ..+.|+|+++.+...|+.|....+..
T Consensus 148 ~~Iv~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~ 226 (425)
T d2okca1 148 RPLIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT 226 (425)
T ss_dssp HHHHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred hhhhHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcc
Confidence 446666777665 3567799999999999999998877543221 25999999999999999998877654
Q ss_pred CceEEEEcCCCCCCCCCCcccEEEecchhhhhccccC-----cchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-----C
Q 022698 170 EYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYG-----HRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-----L 239 (293)
Q Consensus 170 ~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-----~ 239 (293)
.+......|.... ....+||+|++||||........ ............++..+...|++||++.++-. .
T Consensus 227 ~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~ 305 (425)
T d2okca1 227 DRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFE 305 (425)
T ss_dssp SCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHC
T ss_pred ccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhh
Confidence 2356677777663 34568999999999954321100 00000111334689999999999998776422 1
Q ss_pred C--chHHHHHHHHcC
Q 022698 240 H--VPEYVRRLQELK 252 (293)
Q Consensus 240 ~--~~~~~~~l~~~g 252 (293)
. ...+++.|.+.+
T Consensus 306 ~~~~~~iR~~Ll~~~ 320 (425)
T d2okca1 306 AGAGETIRKRLLQDF 320 (425)
T ss_dssp STHHHHHHHHHHHHE
T ss_pred hhhHHHHHHHHHHhc
Confidence 1 235666666554
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.83 E-value=3.2e-09 Score=89.45 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=90.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc---------CCCCceEEEEcCCCCCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME---------GVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~---------~~~~~v~~~~~d~~~~~~ 184 (293)
..+.+||.+|+|.|..+..+++. + ..+++++|+++..++.+++.+... ...++++++..|+...--
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~-~----~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~ 145 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH-D----VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK 145 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-C----CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred CCCceEEEecCCchHHHHHHHHh-C----CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh
Confidence 45679999999999998877654 2 348999999999999999876432 234689999999876432
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc---CCCchH---HHHHHHHcCCcceEE
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD---LLHVPE---YVRRLQELKMEDIRV 258 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~---~~~~l~~~gf~~~~~ 258 (293)
.+++||+|++..+-..-+ .... --.++++.+.+.|+|||++++-. ....+. +.+.+++. |..+..
T Consensus 146 ~~~~yDvIi~D~~~~~~~---~~~L-----~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~~ 216 (276)
T d1mjfa_ 146 NNRGFDVIIADSTDPVGP---AKVL-----FSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVYY 216 (276)
T ss_dssp HCCCEEEEEEECCCCC--------T-----TSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEEE
T ss_pred ccCCCCEEEEeCCCCCCC---cccc-----cCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhh-CCeeEE
Confidence 357899999864321111 0000 12579999999999999998732 222333 33444454 777766
Q ss_pred e
Q 022698 259 S 259 (293)
Q Consensus 259 ~ 259 (293)
.
T Consensus 217 y 217 (276)
T d1mjfa_ 217 Y 217 (276)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.82 E-value=1.5e-08 Score=79.81 Aligned_cols=139 Identities=19% Similarity=0.186 Sum_probs=98.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+++.+. ..++..++|..+|.|..+..+++. +.+|+|+|.++.++..+++. ..+++.+++.+..+
T Consensus 6 ll~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~------~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~ 73 (182)
T d1wg8a2 6 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER------GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRH 73 (182)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGG
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc------cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHH
Confidence 3445555554 467889999999999999988874 35999999999999887754 13568999988876
Q ss_pred CC-----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchH--HHHHHHHcCCc
Q 022698 182 LP-----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPE--YVRRLQELKME 254 (293)
Q Consensus 182 ~~-----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~l~~~gf~ 254 (293)
+. ...+++|.|+....+...+.+...+.+. .....|......|+|||.++++.+...++ +...+++.+++
T Consensus 74 ~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~---~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k 150 (182)
T d1wg8a2 74 LKRHLAALGVERVDGILADLGVSSFHLDDPSDELN---ALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLK 150 (182)
T ss_dssp HHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHH---HHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHH---HHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccce
Confidence 43 2346799999876554433221122222 44557888889999999999988765554 66666776655
Q ss_pred c
Q 022698 255 D 255 (293)
Q Consensus 255 ~ 255 (293)
.
T Consensus 151 ~ 151 (182)
T d1wg8a2 151 V 151 (182)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=4.5e-08 Score=83.02 Aligned_cols=134 Identities=14% Similarity=0.074 Sum_probs=91.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC---CCc
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG---DNY 188 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~ 188 (293)
...++.+|||+++|.|.-+.+++..+.. ..+++++|+++.-++.+++++++.|+. ++.+...|...+... .++
T Consensus 91 ~~~~g~~vLD~cAapGgKt~~la~l~~~---~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~~~~~ 166 (293)
T d2b9ea1 91 DPPPGSHVIDACAAPGNKTSHLAALLKN---QGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHE 166 (293)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTT
T ss_pred CCCccceEEecccchhhHHHHHHHHhcC---CceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccccccce
Confidence 3467889999999999999999988754 359999999999999999999999974 588989988765422 257
Q ss_pred ccEEEecchhhhhcc---ccC-----cch----hhhHHHHHHHHHHHHHcccCCcEEEEEcCCC----chHHHHHHHH
Q 022698 189 FDVVVSAAFFHTVGK---EYG-----HRT----VEAAAERMRVLGEMVRVLKPGGVGVVWDLLH----VPEYVRRLQE 250 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~---~~~-----~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~l~~ 250 (293)
||.|++.+|...... .+. ... ..-..-...++..+. .|+|||.|+.+.+.. ++++++.+.+
T Consensus 167 fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L~ 243 (293)
T d2b9ea1 167 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQ 243 (293)
T ss_dssp EEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHHT
T ss_pred eeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHHH
Confidence 999999988543221 110 000 111112234566665 479999988866543 3345544433
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=2.8e-09 Score=90.31 Aligned_cols=133 Identities=18% Similarity=0.086 Sum_probs=90.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC---CCCceEEEEcCCCCCC-CCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG---VQEYVTAREGDVRSLP-FGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~---~~~~v~~~~~d~~~~~-~~~~~fD 190 (293)
.+++||-||.|.|..+..+++..+ ..+|+++|+++.+++.+++.+..+. -.++++++..|+...- -.+++||
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~----~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 164 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDS----VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFD 164 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTT----CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCceEEEecCCchHHHHHHHhcCC----CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCC
Confidence 457999999999999988876644 3589999999999999998765431 1368999999987642 2356899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---Cch---HHHHHHHHcCCcceEEe
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---HVP---EYVRRLQELKMEDIRVS 259 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~---~~~~~l~~~gf~~~~~~ 259 (293)
+|++..+-....+ .... --.++++.+.+.|+|||++++-... ..+ .+.+.+++. |..+...
T Consensus 165 vIi~D~~dp~~~~--~~~L-----~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v-F~~v~~y 231 (295)
T d1inla_ 165 VIIIDSTDPTAGQ--GGHL-----FTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRVY 231 (295)
T ss_dssp EEEEEC------------C-----CSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEEE
T ss_pred EEEEcCCCCCcCc--hhhh-----ccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhh-cceeEEE
Confidence 9998643211110 0000 1257999999999999999884322 222 233444455 7766654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.66 E-value=2.2e-07 Score=75.84 Aligned_cols=141 Identities=16% Similarity=0.118 Sum_probs=103.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC---CCCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF---GDNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~ 191 (293)
...+++|+|+|.|--++.++-..| ..+++.+|.+..-+...+.-....++. ++.++...++++.. ..++||+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p----~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~~~~~D~ 144 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFP----HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDI 144 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCT----TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCC----CccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccccccccceE
Confidence 456899999999999999998877 469999999999999999988888884 58888888766432 1357999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-chH---HHHHHHHcCCcceEEee-eeccce
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH-VPE---YVRRLQELKMEDIRVSE-RVTAFM 266 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~---~~~~l~~~gf~~~~~~~-~~~~~~ 266 (293)
|+|-.+- ....+++-+...+++||.+++.--.. .++ ....+...|++...+.+ .+....
T Consensus 145 v~sRAva----------------~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~ 208 (239)
T d1xdza_ 145 VTARAVA----------------RLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEE 208 (239)
T ss_dssp EEEECCS----------------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTC
T ss_pred EEEhhhh----------------CHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCC
Confidence 9997442 44567888899999999998854332 233 33455667887666543 222333
Q ss_pred ecceeeeeec
Q 022698 267 VSSHIVSFRK 276 (293)
Q Consensus 267 ~~~~~~~~~~ 276 (293)
..++++..+|
T Consensus 209 ~~r~lv~i~K 218 (239)
T d1xdza_ 209 SDRNIMVIRK 218 (239)
T ss_dssp CEEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 3446777765
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.66 E-value=9.9e-09 Score=87.31 Aligned_cols=134 Identities=14% Similarity=0.043 Sum_probs=89.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC---CCCceEEEEcCCCCCC-CCCCcc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG---VQEYVTAREGDVRSLP-FGDNYF 189 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~---~~~~v~~~~~d~~~~~-~~~~~f 189 (293)
..+.+||-||.|.|..+..+++..+ ..+++++|+++..++.+++.+..+. -.++++++..|+...- ....+|
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~----v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~y 180 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHES----VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEF 180 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTT----CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCC----cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCC
Confidence 3457999999999999988887643 3599999999999999999865422 1367999999987632 235689
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC--CCch----HHHHHHHHcCCcceEEee
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL--LHVP----EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~----~~~~~l~~~gf~~~~~~~ 260 (293)
|+|++..+-..-+ .. .---.++++.+.+.|+|||+++.-.. ...+ .+.+.+++. |..+....
T Consensus 181 DvII~D~~dp~~~---~~-----~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v-F~~v~~y~ 248 (312)
T d2b2ca1 181 DVIITDSSDPVGP---AE-----SLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYAQ 248 (312)
T ss_dssp EEEEECCC---------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEEE
T ss_pred CEEEEcCCCCCCc---ch-----hhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhc-cceEEEee
Confidence 9999864321111 00 01235789999999999999998432 2222 233344443 77666543
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.65 E-value=3.5e-08 Score=86.31 Aligned_cols=123 Identities=20% Similarity=0.152 Sum_probs=90.1
Q ss_pred cccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC
Q 022698 90 NFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ 169 (293)
Q Consensus 90 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~ 169 (293)
-||......+.++.-.++... .+.+|||..||+|..++..+.+.+ ..+|++.|+|+.+++.+++|++.|+..
T Consensus 24 vFYNp~q~~NRDlsvl~~~~~----~~~~vLD~~sasG~rsiRya~E~~----~~~V~~nDis~~A~~~i~~N~~lN~~~ 95 (375)
T d2dula1 24 VFYNPRMALNRDIVVVLLNIL----NPKIVLDALSATGIRGIRFALETP----AEEVWLNDISEDAYELMKRNVMLNFDG 95 (375)
T ss_dssp CCCCGGGHHHHHHHHHHHHHH----CCSEEEESSCTTSHHHHHHHHHSS----CSEEEEEESCHHHHHHHHHHHHHHCCS
T ss_pred cccCHHHhhhhHHHHHHHHHh----CCCEEEEcCCCccHHHHHHHHhCC----CCEEEEecCCHHHHHHHHHHHHhcCcc
Confidence 355444455566655555544 356899999999999998887764 358999999999999999999988764
Q ss_pred C--------------ceEEEEcCCCCCC-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 170 E--------------YVTAREGDVRSLP-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 170 ~--------------~v~~~~~d~~~~~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
+ .+.+.+.|+..+. .....||+|...|. . .+..++..+.+.++.||.|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiDPf-G---------------s~~pfldsAi~a~~~~Gll~ 159 (375)
T d2dula1 96 ELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPF-G---------------SPMEFLDTALRSAKRRGILG 159 (375)
T ss_dssp CCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECCS-S---------------CCHHHHHHHHHHEEEEEEEE
T ss_pred ccccccccccccccceeEeehhhhhhhhHhhcCcCCcccCCCC-C---------------CcHHHHHHHHHHhccCCEEE
Confidence 2 2455566654322 12457999998762 2 33568888999999999999
Q ss_pred EE
Q 022698 235 VW 236 (293)
Q Consensus 235 ~~ 236 (293)
+.
T Consensus 160 vT 161 (375)
T d2dula1 160 VT 161 (375)
T ss_dssp EE
T ss_pred EE
Confidence 84
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.64 E-value=2.1e-07 Score=77.93 Aligned_cols=133 Identities=15% Similarity=0.155 Sum_probs=91.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-C--CCCceEEEEcCCCCCC-CCCCcc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-G--VQEYVTAREGDVRSLP-FGDNYF 189 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-~--~~~~v~~~~~d~~~~~-~~~~~f 189 (293)
..+.+||-||.|.|..+..++++.+ ..+++++||++..++.+++....+ + -.+|++++..|+...- ..+.+|
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~----~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~y 149 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPS----VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQY 149 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTT----CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCC----cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCC
Confidence 3457999999999999988886644 359999999999999999986432 1 2468999999987632 235689
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC--CCch----HHHHHHHHcCCcceEEe
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL--LHVP----EYVRRLQELKMEDIRVS 259 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~----~~~~~l~~~gf~~~~~~ 259 (293)
|+|++..+-. .. +....+ -.++++.+.+.|+|||+++.... ...+ .+.+.+++. |..+...
T Consensus 150 DvIi~D~~~p-~~--~~~~L~-----t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~-F~~v~~y 216 (274)
T d1iy9a_ 150 DVIMVDSTEP-VG--PAVNLF-----TKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPITKLY 216 (274)
T ss_dssp EEEEESCSSC-CS--CCCCCS-----TTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEE
T ss_pred CEEEEcCCCC-CC--cchhhc-----cHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh-cCceEEE
Confidence 9999874321 11 111111 25799999999999999988432 2222 233334444 7766654
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.63 E-value=5.1e-08 Score=82.36 Aligned_cols=111 Identities=20% Similarity=0.179 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc---CCCCceEEEEcCCCCCC--CCCCc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME---GVQEYVTAREGDVRSLP--FGDNY 188 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~---~~~~~v~~~~~d~~~~~--~~~~~ 188 (293)
..+++||-||.|.|..+..+++..+ ..+++++|+++..++.+++....+ .-.++++++..|....- ..+++
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~----~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~ 154 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHAS----IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS 154 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCcceEEecCCchHHHHHHHhccc----ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccC
Confidence 3457999999999999988877644 358999999999999999976432 12467999999987532 23568
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
||+|++...- ... +.... --.++++.+.+.|+|||++++-
T Consensus 155 yDvIi~D~~d-p~~--~~~~L-----~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 155 YDAVIVDSSD-PIG--PAKEL-----FEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEEEEECCCC-TTS--GGGGG-----GSHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEcCCC-CCC--cchhh-----CCHHHHHHHHHhcCCCcEEEEe
Confidence 9999986331 111 00111 2257999999999999999984
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=4.7e-08 Score=82.36 Aligned_cols=139 Identities=17% Similarity=0.143 Sum_probs=92.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc---CCCCceEEEEcCCCCCC-CCCCcc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME---GVQEYVTAREGDVRSLP-FGDNYF 189 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~---~~~~~v~~~~~d~~~~~-~~~~~f 189 (293)
..+++||-||.|.|..+..+++..+ ..+++++|+++..++.+++.+..+ --.++++++..|+...- ...++|
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~----~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y 152 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPS----VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAF 152 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCC----cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCC
Confidence 3457999999999999988876544 359999999999999999886432 12368999999987632 235689
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCch----HHHHHHHHcCCcceEEee-ee
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVP----EYVRRLQELKMEDIRVSE-RV 262 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~----~~~~~l~~~gf~~~~~~~-~~ 262 (293)
|+|++..+ ..... . ..---.++++.+.+.|+|||++++-. ....+ .+.+.+++. |..+.... .+
T Consensus 153 DvIi~D~~-~p~~~--~-----~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~~y~~~v 223 (285)
T d2o07a1 153 DVIITDSS-DPMGP--A-----ESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVAYAYCTI 223 (285)
T ss_dssp EEEEEECC-------------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEEEEEEEC
T ss_pred CEEEEcCC-CCCCc--c-----cccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhc-CCeeeEEeeee
Confidence 99998642 11110 0 00123478999999999999998832 22222 233344343 77776543 34
Q ss_pred ccc
Q 022698 263 TAF 265 (293)
Q Consensus 263 ~~~ 265 (293)
..+
T Consensus 224 P~~ 226 (285)
T d2o07a1 224 PTY 226 (285)
T ss_dssp TTS
T ss_pred eec
Confidence 444
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=1.4e-07 Score=86.32 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCC--------------cEEEEEeCCHHHHHHHHHHHHh
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSL--------------GRVVGLDCKKRTTLSTLRTAKM 165 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~--------------~~v~~vDis~~~l~~a~~~~~~ 165 (293)
..+++.+++.+.+ .++.+|+|.+||+|.+...+.+++...... ..++|+|+++.+...++-|+..
T Consensus 150 ~~Iv~~mv~ll~~-~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l 228 (524)
T d2ar0a1 150 RPLIKTIIHLLKP-QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL 228 (524)
T ss_dssp HHHHHHHHHHHCC-CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred cchhHhhhhcccC-ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh
Confidence 4566777776653 556799999999999999888776542211 2689999999999999988876
Q ss_pred cCCCCc----eEEEEcCCCCCC-CCCCcccEEEecchhhhhccc----cCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 166 EGVQEY----VTAREGDVRSLP-FGDNYFDVVVSAAFFHTVGKE----YGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 166 ~~~~~~----v~~~~~d~~~~~-~~~~~fD~Iv~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
.+.... -.+...+....+ ....+||+|++||||...... ....+.. .....++..+.+.|+|||++.++
T Consensus 229 ~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~--~~~~~Fi~~~l~~Lk~gGr~aiI 306 (524)
T d2ar0a1 229 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTS--NKQLCFMQHIIETLHPGGRAAVV 306 (524)
T ss_dssp TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCS--CHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccc--cccHHHHHHHHHhccccCcEEEE
Confidence 664321 123333333211 234679999999999543211 0111111 12346899999999999998774
Q ss_pred cC-----CC--chHHHHHHHHcC
Q 022698 237 DL-----LH--VPEYVRRLQELK 252 (293)
Q Consensus 237 ~~-----~~--~~~~~~~l~~~g 252 (293)
-. .. ...+++.|.+.+
T Consensus 307 lP~~~Lf~~~~~~~iR~~Ll~~~ 329 (524)
T d2ar0a1 307 VPDNVLFEGGKGTDIRRDLMDKC 329 (524)
T ss_dssp EEHHHHHCCTHHHHHHHHHHHHE
T ss_pred EehHHhhhhhhhHHHHHHHHHcC
Confidence 22 12 234667776554
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=5e-08 Score=80.70 Aligned_cols=95 Identities=14% Similarity=0.153 Sum_probs=72.4
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
......+.+++.+. ..++..|||||||.|.+|..|++. +.+++++|+++.+++.+++.... .+++.++.+
T Consensus 5 ~d~~~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~ 74 (252)
T d1qyra_ 5 NDQFVIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGER------LDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQ 74 (252)
T ss_dssp CCHHHHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTT------CSCEEEECCCHHHHHHHHTCTTT---GGGEEEECS
T ss_pred CCHHHHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHcc------CCceEEEEeccchhHHHHHHhhh---ccchhHHhh
Confidence 44556777887774 466789999999999999999865 35899999999998888764332 256999999
Q ss_pred CCCCCCCCC-----CcccEEEecchhhhhc
Q 022698 178 DVRSLPFGD-----NYFDVVVSAAFFHTVG 202 (293)
Q Consensus 178 d~~~~~~~~-----~~fD~Iv~~~~~~~~~ 202 (293)
|+.+.++.. ++--.|++|.||+...
T Consensus 75 D~l~~~~~~~~~~~~~~~~vvgNlPY~Iss 104 (252)
T d1qyra_ 75 DAMTFNFGELAEKMGQPLRVFGNLPYNIST 104 (252)
T ss_dssp CGGGCCHHHHHHHHTSCEEEEEECCTTTHH
T ss_pred hhhhhcccccccccCCCeEEEecchHHHHH
Confidence 998865321 2234788999998654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=7.3e-07 Score=69.78 Aligned_cols=128 Identities=26% Similarity=0.310 Sum_probs=81.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--------C
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--------F 184 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~ 184 (293)
+.++.+|||+||+.|.++..+.+.... ..+++++|+.+- ..+ +.+.++++|..+.. .
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~---~~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~~~~~~~~~~~~ 84 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGG---KGRIIACDLLPM-----------DPI-VGVDFLQGDFRDELVMKALLERV 84 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCT---TCEEEEEESSCC-----------CCC-TTEEEEESCTTSHHHHHHHHHHH
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccc---cceEEEeecccc-----------ccc-CCceEeecccccchhhhhhhhhc
Confidence 467889999999999999988887654 358999998763 122 45889999987632 2
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHH---HHHHHHHHHcccCCcEEEE--EcCCCchHHHHHHHHcCCcceEEe
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER---MRVLGEMVRVLKPGGVGVV--WDLLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~~--~~~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
..+++|+|+|........ .......... ...+.-+.++|++||.+++ .+.....++...++ .-|+.+.+.
T Consensus 85 ~~~~~DlVlSD~ap~~sg----~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~-~~F~~V~~~ 159 (180)
T d1ej0a_ 85 GDSKVQVVMSDMAPNMSG----TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIR-SLFTKVKVR 159 (180)
T ss_dssp TTCCEEEEEECCCCCCCS----CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHH-HHEEEEEEE
T ss_pred cCcceeEEEecccchhcc----cchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHH-hhcCEEEEE
Confidence 356899999975533221 1111111111 2345556689999999998 33223344444443 336655554
Q ss_pred e
Q 022698 260 E 260 (293)
Q Consensus 260 ~ 260 (293)
+
T Consensus 160 K 160 (180)
T d1ej0a_ 160 K 160 (180)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.30 E-value=8.3e-07 Score=72.22 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=68.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDV 191 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~ 191 (293)
+.+|||||++.|.-+..++..+...+..++++++|+++...... . ...+++.++.+|..+.. +....+|.
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~----~--~~~~~I~~i~gDs~~~~~~~~l~~~~~dl 154 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP----A--SDMENITLHQGDCSDLTTFEHLREMAHPL 154 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC----G--GGCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh----h--ccccceeeeecccccHHHHHHHHhcCCCE
Confidence 56899999999998888877765545567999999987532211 1 11256999999976532 23446888
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
|+.... |... .....+ .....|++||.+++-|.
T Consensus 155 IfID~~-H~~~------------~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 155 IFIDNA-HANT------------FNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EEEESS-CSSH------------HHHHHH-HHHHTCCTTCEEEECSC
T ss_pred EEEcCC-cchH------------HHHHHH-HHhcccCcCCEEEEEcC
Confidence 876533 2221 112223 35679999999998654
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=98.29 E-value=1e-06 Score=72.18 Aligned_cols=123 Identities=18% Similarity=0.119 Sum_probs=84.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhc------------------------------------CCCcEEEEEeCCHHH
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKT------------------------------------GSLGRVVGLDCKKRT 155 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~------------------------------------~~~~~v~~vDis~~~ 155 (293)
...++..++|..||||++.+..+....+. .....++|.|+++.+
T Consensus 47 ~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~a 126 (249)
T d1o9ga_ 47 PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEA 126 (249)
T ss_dssp SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHH
Confidence 35566789999999999998876521000 001357899999999
Q ss_pred HHHH---HHHHHhcCCCCceEEEEcCCCCCCC-----CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcc
Q 022698 156 TLST---LRTAKMEGVQEYVTAREGDVRSLPF-----GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVL 227 (293)
Q Consensus 156 l~~a---~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 227 (293)
++.| ++|++..|+...+.+.+.|+++... +....++||+||||..--...+ ....+....++..+.+.+
T Consensus 127 i~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~---~~~~~~~~~~~~~l~~~~ 203 (249)
T d1o9ga_ 127 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEG---QVPGQPVAGLLRSLASAL 203 (249)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS---CCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccc---cchHHHHHHHHHHHHccC
Confidence 9988 4688889988889999999876431 2345799999999975432111 111235567788888888
Q ss_pred cCCcEEEEEc
Q 022698 228 KPGGVGVVWD 237 (293)
Q Consensus 228 kpgG~l~~~~ 237 (293)
.....+++++
T Consensus 204 p~~s~~~it~ 213 (249)
T d1o9ga_ 204 PAHAVIAVTD 213 (249)
T ss_dssp CTTCEEEEEE
T ss_pred CCCcEEEEeC
Confidence 6555666643
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.01 E-value=3e-05 Score=62.67 Aligned_cols=131 Identities=16% Similarity=0.070 Sum_probs=76.3
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC-CCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD-VRSLP 183 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d-~~~~~ 183 (293)
++.+.. .+.+..+|+|+|||.|..+..++...+ ...+.|+++--.-.+ ........+. +.+.+...+ +..
T Consensus 57 ~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~----v~~V~g~~iG~d~~e-~P~~~~~~~~-ni~~~~~~~dv~~-- 127 (257)
T d2p41a1 57 WFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKN----VREVKGLTKGGPGHE-EPIPMSTYGW-NLVRLQSGVDVFF-- 127 (257)
T ss_dssp HHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTT----EEEEEEECCCSTTSC-CCCCCCSTTG-GGEEEECSCCTTT--
T ss_pred HHHHhc-CccCCCeEEEecCCCChHHHHHHhhcC----CCceeEEEecCcccc-CCcccccccc-ccccchhhhhHHh--
Confidence 344443 356778999999999999988876533 357888887422000 0000111111 224444333 222
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE-EcCCCchHHHHHHHH
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVPEYVRRLQE 250 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~l~~ 250 (293)
.+.++.|+|+|.-.-. .+ ...++.....++++-+.+.|+|||.+++ +-....+++.+.|..
T Consensus 128 l~~~~~D~vlcDm~es-----s~-~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~ 189 (257)
T d2p41a1 128 IPPERCDTLLCDIGES-----SP-NPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEA 189 (257)
T ss_dssp SCCCCCSEEEECCCCC-----CS-SHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHH
T ss_pred cCCCcCCEEEeeCCCC-----CC-CchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHH
Confidence 3457899999974311 11 1122222334677777899999998877 445567888887754
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.70 E-value=6.8e-05 Score=63.74 Aligned_cols=86 Identities=9% Similarity=-0.008 Sum_probs=65.6
Q ss_pred cccccccCccchHHHHHHHHHhcC-----CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHH
Q 022698 88 AGNFFYSAVPLHYDMAQRMVGSVN-----DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT 162 (293)
Q Consensus 88 ~~~f~~~~~~~~~~~~~~l~~~~~-----~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~ 162 (293)
...+|+.++-..+.+.+.+++.+. ....+.+|||||+|.|.+|..++.... ..+++++|+++...+..++.
T Consensus 11 ~kk~~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~----~~~v~~iE~D~~~~~~L~~~ 86 (322)
T d1i4wa_ 11 LKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC----PRQYSLLEKRSSLYKFLNAK 86 (322)
T ss_dssp SCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC----CSEEEEECCCHHHHHHHHHH
T ss_pred hhhhccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCC----CCEEEEEECCHHHHHHHHHh
Confidence 345667777788888888887753 112466899999999999999987642 24899999999999888876
Q ss_pred HHhcCCCCceEEEEcCCCC
Q 022698 163 AKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 163 ~~~~~~~~~v~~~~~d~~~ 181 (293)
.. .+++.++.+|+..
T Consensus 87 ~~----~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 87 FE----GSPLQILKRDPYD 101 (322)
T ss_dssp TT----TSSCEEECSCTTC
T ss_pred cc----CCCcEEEeCchhh
Confidence 53 2458899999864
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.42 E-value=0.00011 Score=59.69 Aligned_cols=80 Identities=15% Similarity=-0.039 Sum_probs=61.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--------CCCceEEEEcCCCCC-CCCC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--------VQEYVTAREGDVRSL-PFGD 186 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--------~~~~v~~~~~d~~~~-~~~~ 186 (293)
..+|||.-||.|..+..++.. +++|+++|.|+......+.++++.. ...+++++.+|..++ ....
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~------G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~ 162 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHH------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS
T ss_pred CCEEEECCCcccHHHHHHHhC------CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccC
Confidence 348999999999999999876 5799999999987776666554321 124789999997663 2234
Q ss_pred CcccEEEecchhhhh
Q 022698 187 NYFDVVVSAAFFHTV 201 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~ 201 (293)
.+||+|...|+|..-
T Consensus 163 ~~~DvIYlDPMFp~~ 177 (250)
T d2oyra1 163 PRPQVVYLDPMFPHK 177 (250)
T ss_dssp SCCSEEEECCCCCCC
T ss_pred CCCCEEEECCCCccc
Confidence 679999999988543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.94 E-value=0.0026 Score=48.04 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=60.5
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--------
Q 022698 113 WSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-------- 183 (293)
Q Consensus 113 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-------- 183 (293)
..++.+||-+|||. |..+..+++.. +++|+++|.++..++.+++. +.. . ....+.....
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-----Ga~vi~v~~~~~r~~~a~~~----ga~--~-~~~~~~~~~~~~~~~~~~ 91 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-----GAFVVCTARSPRRLEVAKNC----GAD--V-TLVVDPAKEEESSIIERI 91 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHT----TCS--E-EEECCTTTSCHHHHHHHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-----cccccccchHHHHHHHHHHc----CCc--E-EEeccccccccchhhhhh
Confidence 56788999998874 44444444432 46999999999988777654 321 2 2222221111
Q ss_pred --CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 184 --FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 184 --~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
...+.+|+|+-... -...+..+.+.++|+|+++++...
T Consensus 92 ~~~~g~g~D~vid~~g------------------~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 92 RSAIGDLPNVTIDCSG------------------NEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp HHHSSSCCSEEEECSC------------------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred hcccccCCceeeecCC------------------ChHHHHHHHHHHhcCCceEEEecC
Confidence 01245899985422 124566777899999999997654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.77 E-value=0.0019 Score=50.26 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=65.7
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------C
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------F 184 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------~ 184 (293)
...++.+||-+|||. |..+..+++... ..+|+++|.++..++.|++. |. ..+....-.++. .
T Consensus 22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~g----a~~Vi~~d~~~~rl~~a~~~----Ga---~~~~~~~~~~~~~~i~~~t 90 (195)
T d1kola2 22 GVGPGSTVYVAGAGPVGLAAAASARLLG----AAVVIVGDLNPARLAHAKAQ----GF---EIADLSLDTPLHEQIAALL 90 (195)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEEESCHHHHHHHHHT----TC---EEEETTSSSCHHHHHHHHH
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhhc----ccceeeecccchhhHhhhhc----cc---cEEEeCCCcCHHHHHHHHh
Confidence 467889999999987 445555555433 45999999999988877655 32 122211111110 1
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
....+|+++-.-............ ........++.+.+.++|||++.++..
T Consensus 91 ~g~g~D~vid~vG~~~~~~~~~~~---~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 91 GEPEVDCAVDAVGFEARGHGHEGA---KHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp SSSCEEEEEECCCTTCBCSSTTGG---GSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCcEEEEECccccccCCcccce---eecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 234589988542211000000000 000224678889999999999999764
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.74 E-value=0.002 Score=51.87 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK 164 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~ 164 (293)
.++.+++++... .++..|||.-||+|..+.+..+. +.+.+|+|++++.++.|+++++
T Consensus 199 ~~L~~~lI~~~s--~~gd~VlDpF~GSGTT~~aa~~~------~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL------GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhC--CCCCEEEECCCCchHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHc
Confidence 468888888875 56789999999999998766654 4699999999999999998865
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.69 E-value=0.012 Score=48.62 Aligned_cols=137 Identities=10% Similarity=0.091 Sum_probs=82.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC-CCcccEEEec
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG-DNYFDVVVSA 195 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Iv~~ 195 (293)
.+|+|+-||.|.+...+... | -..+.++|+++.+.+..+.|.. -.....|+.++... -...|+++..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a----G-~~~~~a~e~d~~a~~~~~~N~~-------~~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA----G-FRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH----T-CEEEEEEECCHHHHHHHHHHCC-------SEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred CeEEEeCcCcCHHHHHHHHC----C-CEEEEEEeCCHHHHHHHHHHCC-------CCCccCChhhCCHhHcccccEEeec
Confidence 37999999999998776543 2 2356699999998887777742 24577899886532 2469999999
Q ss_pred chhhhhccccCcchhhhHH-HHHHHHHHHHHcccCCcEEEE-E-cCC---C---chHHHHHHHHcCCcceEEeeeeccc
Q 022698 196 AFFHTVGKEYGHRTVEAAA-ERMRVLGEMVRVLKPGGVGVV-W-DLL---H---VPEYVRRLQELKMEDIRVSERVTAF 265 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~-~-~~~---~---~~~~~~~l~~~gf~~~~~~~~~~~~ 265 (293)
+|...+..--...+..+.. ..---+-++...++|.-+++= + +.. . .......+.+.||..-...-+...|
T Consensus 69 ~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~vlna~~~ 147 (324)
T d1dcta_ 69 PPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDY 147 (324)
T ss_dssp CCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEEEEEGGGG
T ss_pred ccccccccccccccccccccchHHHHHHHHHhhCCceeeccccccccccccchhhHHHHhHHhhCCCccceeeeecccc
Confidence 9887665322222222222 222223345567889644332 1 111 1 1245566667788755444333333
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.69 E-value=0.0012 Score=54.90 Aligned_cols=61 Identities=7% Similarity=0.004 Sum_probs=50.2
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
...++.++++.... +++..|||.-||+|..+.+.... +.+.+|+|+++++++.+++++...
T Consensus 235 kP~~L~~rlI~~~s--~~gdiVlDpF~GSGTT~~AA~~l------gR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 235 FPAKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERE------SRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CCTHHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred CchHHHHHhhhhcc--cCCCEEEecCCCCcHHHHHHHHc------CCcEEEEeCCHHHHHHHHHHHHhc
Confidence 34578888888775 47789999999999998776654 469999999999999998886543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.68 E-value=0.0042 Score=47.23 Aligned_cols=98 Identities=12% Similarity=0.073 Sum_probs=61.9
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG 185 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 185 (293)
+..++.+||=+|||. |..+..+++... ...++++|.++..++.+++. |. .+++..+-.+.. ..
T Consensus 25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g----~~~v~~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 25 KVTPASSFVTWGAGAVGLSALLAAKVCG----ASIIIAVDIVESRLELAKQL----GA---THVINSKTQDPVAAIKEIT 93 (174)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHT----CSEEEEEESCHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCHHHhhhhhcccccc----cceeeeeccHHHHHHHHHHc----CC---eEEEeCCCcCHHHHHHHHc
Confidence 467888999999865 233333444332 35888999999977777654 43 234433322211 22
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
++.||+|+-... -...++.+.+.++|+|+++++..
T Consensus 94 ~gg~D~vid~~G------------------~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 94 DGGVNFALESTG------------------SPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp TSCEEEEEECSC------------------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCcEEEEcCC------------------cHHHHHHHHhcccCceEEEEEee
Confidence 457999995422 12456677889999999998654
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.61 E-value=0.005 Score=47.06 Aligned_cols=102 Identities=18% Similarity=0.104 Sum_probs=62.2
Q ss_pred HhcCCCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC----
Q 022698 108 GSVNDWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL---- 182 (293)
Q Consensus 108 ~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~---- 182 (293)
....+..++.+||-+|+|. |..+..+++.+. ..+|+++|.+++.++.+++. |.. .++...-.+.
T Consensus 21 ~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~G----a~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~ 89 (182)
T d1vj0a2 21 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLG----AENVIVIAGSPNRLKLAEEI----GAD---LTLNRRETSVEERR 89 (182)
T ss_dssp HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTT----BSEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHH
T ss_pred HHHhCCCCCCEEEEECCCccchhheecccccc----cccccccccccccccccccc----cce---EEEeccccchHHHH
Confidence 3444566788999999874 555555555432 23899999999988777643 321 2222111110
Q ss_pred ----C-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 183 ----P-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 183 ----~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
. .....+|+|+..-.- ...++...+.|+|||+++++..
T Consensus 90 ~~i~~~~~~~g~Dvvid~vG~------------------~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 90 KAIMDITHGRGADFILEATGD------------------SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp HHHHHHTTTSCEEEEEECSSC------------------TTHHHHHHHHEEEEEEEEECCC
T ss_pred HHHHHhhCCCCceEEeecCCc------------------hhHHHHHHHHhcCCCEEEEEee
Confidence 0 112359998854211 1345667789999999988764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.0043 Score=47.08 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=61.0
Q ss_pred cCCCCCCCeEEEEcCC--CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----
Q 022698 110 VNDWSTVKTALDIGCG--RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---- 183 (293)
Q Consensus 110 ~~~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 183 (293)
..++.++.+||-.|++ .|..+..+++.. ++++++++.|++..+.+++ .|.. .++...-.++.
T Consensus 23 ~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-----G~~vi~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~~~i~ 90 (174)
T d1yb5a2 23 SACVKAGESVLVHGASGGVGLAACQIARAY-----GLKILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYIDKIK 90 (174)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHHHHHH
T ss_pred HhCCCCCCEEEEEecccccccccccccccc-----Ccccccccccccccccccc----cCcc---cccccccccHHHHhh
Confidence 3456788899999962 344455555443 4799999999886666543 4542 22221111110
Q ss_pred --CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 --FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 --~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.....+|+|+.+.. ...++...++|+|+|+++.+..
T Consensus 91 ~~t~~~g~d~v~d~~g-------------------~~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 91 KYVGEKGIDIIIEMLA-------------------NVNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp HHHCTTCEEEEEESCH-------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred hhhccCCceEEeeccc-------------------HHHHHHHHhccCCCCEEEEEec
Confidence 12456999997522 2356777889999999998753
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.54 E-value=0.0015 Score=49.50 Aligned_cols=99 Identities=16% Similarity=0.108 Sum_probs=60.2
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc-CCCCCC-CCCCc
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-DVRSLP-FGDNY 188 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~~~-~~~~~ 188 (293)
...++.+||-+|+|. |..+..+++.. +++++++|.|++.++.+++. |.. .++.. +-.+.. ...+.
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~-----G~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~~~~ 91 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAM-----GAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFDT 91 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHH-----TCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCSC
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhc-----cccccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhhhcc
Confidence 467888999999873 55555555443 47999999999988777654 432 23322 111111 12356
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
||+|+..-.-..- ..+....+.|+|+|+++++..
T Consensus 92 ~d~vi~~~~~~~~----------------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 92 FDLIVVCASSLTD----------------IDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp EEEEEECCSCSTT----------------CCTTTGGGGEEEEEEEEECCC
T ss_pred cceEEEEecCCcc----------------chHHHHHHHhhccceEEEecc
Confidence 9988864221110 012345679999999998764
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.41 E-value=0.0046 Score=47.04 Aligned_cols=99 Identities=20% Similarity=0.215 Sum_probs=62.2
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F- 184 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~- 184 (293)
+..++.+||=+|||. |..+..+++.+. ..+|+++|.+++.++.+++. |.. .++...-.+.. .
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~G----a~~Vi~~d~~~~r~~~a~~l----Ga~---~~i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLRG----AGRIIGVGSRPICVEAAKFY----GAT---DILNYKNGHIEDQVMKLT 92 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTT----CSCEEEECCCHHHHHHHHHH----TCS---EEECGGGSCHHHHHHHHT
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhccc----ccccccccchhhhHHHHHhh----Ccc---ccccccchhHHHHHHHHh
Confidence 467888999899876 555555555432 24799999999987777654 321 23322211110 1
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
....+|+|+-.-.- ...+++..+.++|+|.++++...
T Consensus 93 ~g~G~D~vid~~g~------------------~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 93 NGKGVDRVIMAGGG------------------SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp TTSCEEEEEECSSC------------------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred hccCcceEEEccCC------------------HHHHHHHHHHHhcCCEEEEEeec
Confidence 12349999865321 13456677899999999997643
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.39 E-value=0.0051 Score=50.01 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=50.8
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
...++.+++++... .++..|||.-||+|..+.+.... +.+.+|+|+++...+.++++.+..
T Consensus 192 kP~~L~~~~I~~~s--~~gdiVLDpF~GSGTT~~Aa~~l------gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 192 KPAAVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQE------GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CCHHHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHH------TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred cchhHHHHHHHhhc--CCCCEEEecCCCCcHHHHHHHHh------CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 34568888888775 47789999999999998777655 459999999999999999998754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.0072 Score=45.59 Aligned_cols=99 Identities=17% Similarity=0.088 Sum_probs=60.8
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-------
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------- 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 183 (293)
+..++.+||=+|+|. |..+..+++.. | ..+|+++|.++..++.+++. |.. .+...+-.+..
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~---G-~~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~~~~~~ 91 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAM---G-AAQVVVTDLSATRLSKAKEI----GAD---LVLQISKESPQEIARKVE 91 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT---T-CSEEEEEESCHHHHHHHHHT----TCS---EEEECSSCCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHc---C-CceEEeccCCHHHHHHHHHh----CCc---cccccccccccccccccc
Confidence 356788999999876 33333333332 2 24899999999988777654 432 22222222110
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
.....+|+|+....- ...++...+.+++||+++++...
T Consensus 92 ~~~g~g~Dvvid~~G~------------------~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 92 GQLGCKPEVTIECTGA------------------EASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp HHHTSCCSEEEECSCC------------------HHHHHHHHHHSCTTCEEEECSCC
T ss_pred ccCCCCceEEEeccCC------------------chhHHHHHHHhcCCCEEEEEecC
Confidence 012468998864321 24567788899999999996643
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.011 Score=49.48 Aligned_cols=130 Identities=8% Similarity=0.057 Sum_probs=72.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC---CCCcccE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF---GDNYFDV 191 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~ 191 (293)
+.+|+|+.||.|.+...+-.. |-.. -+.++|+++.+++..+.|.. ...++..|+.++.. +...+|+
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a----G~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~~~~~Dl 71 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES----CIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDM 71 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH----TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSE
T ss_pred CCEEEEcCcCccHHHHHHHHc----CCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcCCCCccE
Confidence 458999999999988766443 1112 46799999998888777742 24567788876542 2246899
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHH---cc--cCCcEEEEEcCC------CchHHHHHHHHcCCcceEE
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVR---VL--KPGGVGVVWDLL------HVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~L--kpgG~l~~~~~~------~~~~~~~~l~~~gf~~~~~ 258 (293)
++..+|...+..--...+..+ +...++.++.+ .+ +|. .+++=++. ....+...|++.||.....
T Consensus 72 l~ggpPCq~fS~ag~~~~~~d--~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~ 146 (343)
T d1g55a_ 72 ILMSPPCQPFTRIGRQGDMTD--SRTNSFLHILDILPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQYQEF 146 (343)
T ss_dssp EEECCC--------------------CHHHHHHHHGGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred EEeeccccccccccccccccc--ccccccchhhhhHhhhcCCCc-eeeeeccCCcccchhhHHHHhhhhcccccccee
Confidence 999999766552111111111 11223333333 34 575 34442221 1345777889999875443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.30 E-value=0.046 Score=40.75 Aligned_cols=95 Identities=14% Similarity=0.222 Sum_probs=62.8
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecch
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAF 197 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~ 197 (293)
+|+=||| |.++..+++.+.+.+...+|+++|.+++.++.+++. +. +.....+... ......|+|+...|
T Consensus 3 ~I~IIG~--G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~--~~~~~~dlIila~p 71 (171)
T d2g5ca2 3 NVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAK--VEDFSPDFVMLSSP 71 (171)
T ss_dssp EEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGG--GGGTCCSEEEECSC
T ss_pred EEEEEcc--CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhh--hhccccccccccCC
Confidence 5777887 677777887777666567999999999977766654 32 1112222222 12345799998755
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.. ....++.++...++++..+.-+..
T Consensus 72 ~~---------------~~~~vl~~l~~~~~~~~ii~d~~s 97 (171)
T d2g5ca2 72 VR---------------TFREIAKKLSYILSEDATVTDQGS 97 (171)
T ss_dssp HH---------------HHHHHHHHHHHHSCTTCEEEECCS
T ss_pred ch---------------hhhhhhhhhhcccccccccccccc
Confidence 43 445788888999998876655443
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.26 E-value=0.0042 Score=46.66 Aligned_cols=98 Identities=13% Similarity=0.044 Sum_probs=57.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CCC
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FGD 186 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 186 (293)
...++.+||=+|+|. ++....+..... +.+|+++|.++..++.+++ .|.. .++..+-.+.. ...
T Consensus 24 ~~~~g~~VlV~GaG~--vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~~~ 92 (166)
T d1llua2 24 NARPGQWVAISGIGG--LGHVAVQYARAM--GLHVAAIDIDDAKLELARK----LGAS---LTVNARQEDPVEAIQRDIG 92 (166)
T ss_dssp TCCTTCEEEEECCSH--HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHS
T ss_pred CCCCCCEEEEeeccc--cHHHHHHHHHHc--CCccceecchhhHHHhhhc----cCcc---ccccccchhHHHHHHHhhc
Confidence 356788899898755 444333333333 3699999999997776654 3432 33332222210 112
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
+.+|.|++... ...+....+.|+|||+++++...
T Consensus 93 g~~~~i~~~~~-------------------~~~~~~~~~~l~~~G~iv~~G~~ 126 (166)
T d1llua2 93 GAHGVLVTAVS-------------------NSAFGQAIGMARRGGTIALVGLP 126 (166)
T ss_dssp SEEEEEECCSC-------------------HHHHHHHHTTEEEEEEEEECCCC
T ss_pred CCccccccccc-------------------chHHHHHHHHhcCCcEEEEEEec
Confidence 33445554321 23466778899999999987643
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.055 Score=43.46 Aligned_cols=82 Identities=20% Similarity=0.143 Sum_probs=62.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------CC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------FG 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 185 (293)
++.+|=-|++ +.++.++++.+.+.| ++|+.+|.+++.++.+.+..+..+...++.++++|+.+.. -.
T Consensus 10 ~Kv~lITGas-~GIG~aiA~~la~~G--~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 10 DRLALVTGAS-GGIGAAVARALVQQG--LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp TCEEEEESTT-SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 5678888865 567888888888764 6999999999999988888777766567889999997632 01
Q ss_pred CCcccEEEecchhhh
Q 022698 186 DNYFDVVVSAAFFHT 200 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~ 200 (293)
-++.|++|.|.....
T Consensus 87 ~g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 87 HSGVDICINNAGLAR 101 (257)
T ss_dssp HCCCSEEEECCCCCC
T ss_pred cCCCCEEEecccccC
Confidence 267999998865543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.15 E-value=0.015 Score=44.08 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=64.7
Q ss_pred CCCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------
Q 022698 111 NDWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------ 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 183 (293)
....++.+||=+|||. |..+..+++... ..+|+++|.++..++.+++. |.. .++...-.+..
T Consensus 24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~G----a~~Vi~~d~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~ 92 (174)
T d1e3ia2 24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG----ASRIIAIDINGEKFPKAKAL----GAT---DCLNPRELDKPVQDVIT 92 (174)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHH
T ss_pred hCCCCCCEEEEECCChHHHHHHHHHHHhC----CceeeeeccchHHHHHHHHh----CCC---cccCCccchhhhhhhHh
Confidence 3467888999999987 666666666553 35899999999977666554 432 23222111111
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC-cEEEEEcCC
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG-GVGVVWDLL 239 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 239 (293)
...+.+|+|+-.-. -...+.+..+.+++| |.++++...
T Consensus 93 ~~~~~G~d~vie~~G------------------~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 93 ELTAGGVDYSLDCAG------------------TAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp HHHTSCBSEEEESSC------------------CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred hhhcCCCcEEEEecc------------------cchHHHHHHHHhhcCCeEEEecCCC
Confidence 12356899986421 134677788899996 999997654
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.12 E-value=0.015 Score=49.24 Aligned_cols=121 Identities=17% Similarity=0.108 Sum_probs=74.5
Q ss_pred CCeEEEEcCCCChHHHHHHHH--------hhh----cCCCcEEEEEeCCHHHHHHHHHHHHhcC-CCCc--eEEEEcCCC
Q 022698 116 VKTALDIGCGRGILLNAVATQ--------FKK----TGSLGRVVGLDCKKRTTLSTLRTAKMEG-VQEY--VTAREGDVR 180 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~--------~~~----~~~~~~v~~vDis~~~l~~a~~~~~~~~-~~~~--v~~~~~d~~ 180 (293)
.-+|.|+||.+|..+..+... ..+ ..+..+|.--|.-.+-....-+.+.... ..++ +.-+.+.+-
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 357999999999988433221 111 1234688888876654444433332211 1111 233344444
Q ss_pred CCCCCCCcccEEEecchhhhhccccC---------------------cchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYG---------------------HRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
.--+|+++.|+++|...+||+...|. .-......|...+|+.=++-|+|||+++++
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~ 208 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 43367899999999999999864220 011222457778888888999999999873
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=96.05 E-value=0.038 Score=45.81 Aligned_cols=138 Identities=14% Similarity=0.044 Sum_probs=83.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC-CCcccEEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG-DNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Iv 193 (293)
.+.+|+|+.||.|.+...+.+. | -.-+.++|+++.+++..+.|.... ...|+.++... -..+|+++
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a----G-~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~~~~~~Dll~ 76 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC----G-AECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEKTIPDHDILC 76 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT----T-CEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGGGSCCCSEEE
T ss_pred CCCeEEEECccccHHHHHHHHC----C-CeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchhhcceeeeee
Confidence 4679999999999998877543 2 235678999999999888886321 24677765422 24699999
Q ss_pred ecchhhhhccccCcchhhhHH-HHHHHHHHHHHcccCCcEEEE--EcCCC------chHHHHHHHHcCCcceEEeeeecc
Q 022698 194 SAAFFHTVGKEYGHRTVEAAA-ERMRVLGEMVRVLKPGGVGVV--WDLLH------VPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~--~~~~~------~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
..+|...+...-...+..+.. .....+-++.+.++|.=.++= .+... ...+...|++.||......-+...
T Consensus 77 ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl~a~~ 156 (327)
T d2c7pa1 77 AGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALD 156 (327)
T ss_dssp EECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGG
T ss_pred cccccchhhhhhhhcCCcccchhHHHHHHHHHhccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCcceeeEecHHH
Confidence 999876655322222222211 122333445567888643321 11111 245677888999986655444444
Q ss_pred c
Q 022698 265 F 265 (293)
Q Consensus 265 ~ 265 (293)
+
T Consensus 157 ~ 157 (327)
T d2c7pa1 157 Y 157 (327)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.02 E-value=0.062 Score=38.28 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=71.3
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEEE
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVVV 193 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~Iv 193 (293)
+|+=+| .|.++..+++.+.+.| .+|+.+|.+++.++.+... .+ +.++.+|..+.. ..-...|.++
T Consensus 2 ~IvI~G--~G~~G~~la~~L~~~g--~~v~vid~d~~~~~~~~~~---~~----~~vi~Gd~~~~~~l~~~~i~~a~~vv 70 (132)
T d1lssa_ 2 YIIIAG--IGRVGYTLAKSLSEKG--HDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDAGIEDADMYI 70 (132)
T ss_dssp EEEEEC--CSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred EEEEEC--CCHHHHHHHHHHHHCC--CCcceecCChhhhhhhhhh---hh----hhhccCcccchhhhhhcChhhhhhhc
Confidence 455555 4889999999887653 6999999999988766543 12 568889987632 1224688888
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcc
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMED 255 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~ 255 (293)
+...-. +.........+.+.+.-.+..+ ..+++.+.+++.|-..
T Consensus 71 ~~t~~d---------------~~N~~~~~~~k~~~~~~iI~~~---~~~~~~~~l~~~G~d~ 114 (132)
T d1lssa_ 71 AVTGKE---------------EVNLMSSLLAKSYGINKTIARI---SEIEYKDVFERLGVDV 114 (132)
T ss_dssp ECCSCH---------------HHHHHHHHHHHHTTCCCEEEEC---SSTTHHHHHHHTTCSE
T ss_pred ccCCcH---------------HHHHHHHHHHHHcCCceEEEEe---cCHHHHHHHHHCCCCE
Confidence 742211 2223444455667777554433 3567788888998754
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.82 E-value=0.0018 Score=48.84 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 115 TVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
++.+|+=||+|. |..++..+..+ +++|+++|.+++.++..+...... ++....+-..+...-...|+||
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-----GA~V~~~D~~~~~l~~l~~~~~~~-----~~~~~~~~~~l~~~~~~aDivI 100 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-----GAQVQIFDINVERLSYLETLFGSR-----VELLYSNSAEIETAVAEADLLI 100 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHHHGGG-----SEEEECCHHHHHHHHHTCSEEE
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-----CCEEEEEeCcHHHHHHHHHhhccc-----ceeehhhhhhHHHhhccCcEEE
Confidence 467999999998 55555556555 479999999999888777665432 4555444333221123589999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
..-...--+ .|..+-+++.+.+|||..++=
T Consensus 101 ~aalipG~~------------aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 101 GAVLVPGRR------------APILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp ECCCCTTSS------------CCCCBCHHHHTTSCTTCEEEE
T ss_pred EeeecCCcc------------cCeeecHHHHhhcCCCcEEEE
Confidence 864332211 223334667889999998764
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.043 Score=44.49 Aligned_cols=119 Identities=17% Similarity=0.060 Sum_probs=79.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC----------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF----------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 185 (293)
+++|.=|=.|++.++..+++.+.+.+ +.+|+.++.+++.++.+.+.++..+. ++.++.+|+.+... .
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~-g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~ 78 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE 78 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHh
Confidence 45776665677888999988876543 46999999999999988888777653 48899999987430 1
Q ss_pred CCcccEEEecchhhhhccccCcchhhhH-------HHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAA-------AERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-++.|++|.|..+............... ..+..+.+.+...|+++|+++.+.
T Consensus 79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 2679999999765432211111100000 011235666778889999988754
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.72 E-value=0.02 Score=42.88 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=61.2
Q ss_pred CCCCCCeEEEEcCC--CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------
Q 022698 112 DWSTVKTALDIGCG--RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------ 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 183 (293)
...++.+||=+|++ .|..+..+++... ..+|+++|.+++.++.+++. |.. .++..+-.+..
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g----~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~ 92 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVS----GATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRI 92 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHT----CCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEEeccccceeeeeecccccc----cccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHHH
Confidence 35778899999974 2344444444432 36999999999977777654 432 23333322211
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
...+.||+|+....- ...++.+.+.++|||+++++..
T Consensus 93 ~~~~~~d~vid~~g~------------------~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 93 TESKGVDAVIDLNNS------------------EKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp TTTSCEEEEEESCCC------------------HHHHTTGGGGEEEEEEEEECCS
T ss_pred hhcccchhhhccccc------------------chHHHhhhhhcccCCEEEEecc
Confidence 123569999975321 2345566789999999998754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.70 E-value=0.017 Score=43.45 Aligned_cols=97 Identities=11% Similarity=0.011 Sum_probs=60.1
Q ss_pred CCCCCeEEEEcCCCC-hHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CCC
Q 022698 113 WSTVKTALDIGCGRG-ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FGD 186 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G-~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 186 (293)
..++.+||=+|+|.. ..+..+++... ...++++|.+++.++.+++. +. ..++..+-.... ...
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g----~~~vv~~~~~~~k~~~~~~~----ga---~~~i~~~~~~~~~~~~~~~~ 98 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMT----PATVIALDVKEEKLKLAERL----GA---DHVVDARRDPVKQVMELTRG 98 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHC----CCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCHHHHHHHHTTT
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhc----CcccccccchhHHHHHHhhc----cc---ceeecCcccHHHHHHHhhCC
Confidence 467889999998763 33344444432 35899999999877766643 32 233333211110 123
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
..+|+|+-...- ...++...+.|++||+++++..
T Consensus 99 ~g~d~vid~~g~------------------~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 99 RGVNVAMDFVGS------------------QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp CCEEEEEESSCC------------------HHHHHHGGGGEEEEEEEEECCC
T ss_pred CCceEEEEecCc------------------chHHHHHHHHHhCCCEEEEEeC
Confidence 458998865321 2356777889999999998664
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.40 E-value=0.0058 Score=49.00 Aligned_cols=85 Identities=9% Similarity=0.072 Sum_probs=54.5
Q ss_pred EEEEcCCCCC--CCCCCcccEEEecchhhhhccccC--cchhhhHHHHHHHHHHHHHcccCCcEEEEEc-CCCchHHHHH
Q 022698 173 TAREGDVRSL--PFGDNYFDVVVSAAFFHTVGKEYG--HRTVEAAAERMRVLGEMVRVLKPGGVGVVWD-LLHVPEYVRR 247 (293)
Q Consensus 173 ~~~~~d~~~~--~~~~~~fD~Iv~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~ 247 (293)
+++++|..+. .++++++|+|+..|||........ .......+-....++++.++|+|||.+++.. ......+...
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~~ 85 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQY 85 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHH
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchhhhhhhhh
Confidence 3677777652 256789999999999864321111 1111111234567889999999999887643 3334456777
Q ss_pred HHHcCCcceE
Q 022698 248 LQELKMEDIR 257 (293)
Q Consensus 248 l~~~gf~~~~ 257 (293)
+.+.||....
T Consensus 86 ~~~~g~~~~~ 95 (256)
T d1g60a_ 86 LVSKGMIFQN 95 (256)
T ss_dssp HHHTTCEEEE
T ss_pred hhcccceeee
Confidence 8889987554
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.40 E-value=0.082 Score=39.67 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=57.5
Q ss_pred CCCCCCeEEEEcCCCChH-HHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-------
Q 022698 112 DWSTVKTALDIGCGRGIL-LNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------- 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~-~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 183 (293)
...++.+||=+|||.... +..+++... ..+|+++|.+++.++.+++. |.. .++...-.+..
T Consensus 24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G----~~~Vi~~d~~~~kl~~a~~l----Ga~---~~i~~~~~d~~~~~~~~~ 92 (174)
T d1p0fa2 24 KVTPGSTCAVFGLGGVGFSAIVGCKAAG----ASRIIGVGTHKDKFPKAIEL----GAT---ECLNPKDYDKPIYEVICE 92 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHT----CSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHHH
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcC----CceeeccCChHHHHHHHHHc----CCc---EEEcCCCchhHHHHHHHH
Confidence 467889999999876333 333333332 35899999999988877654 432 23321111111
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHccc-CCcEEEEEcCC
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLK-PGGVGVVWDLL 239 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~ 239 (293)
...+.+|+|+-.-.- ...+......++ ++|.++++...
T Consensus 93 ~~~~G~d~vid~~g~------------------~~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 93 KTNGGVDYAVECAGR------------------IETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp HTTSCBSEEEECSCC------------------HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred hcCCCCcEEEEcCCC------------------chHHHHHHHHHHHhcCceEEEEEe
Confidence 123468988864221 233444555554 56999887653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.024 Score=42.45 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=59.0
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CCCCcc
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FGDNYF 189 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f 189 (293)
+..++.+||=+|+|. |..+..+++.. +++++++|.+++.++.+++. |.. .++..+-.+.. ...+.+
T Consensus 27 ~~~~G~~VlI~GaG~vG~~a~qlak~~-----Ga~~i~~~~~~~~~~~a~~l----Gad---~~i~~~~~~~~~~~~~~~ 94 (168)
T d1uufa2 27 QAGPGKKVGVVGIGGLGHMGIKLAHAM-----GAHVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAAHLKSF 94 (168)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHTTTTCE
T ss_pred CCCCCCEEEEeccchHHHHHHHHhhcc-----cccchhhccchhHHHHHhcc----CCc---EEEECchhhHHHHhcCCC
Confidence 467888999998864 44444444433 46888999999876665543 432 23322211111 123569
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
|+++-.-.-. ..+....+.++++|+++++....
T Consensus 95 D~vid~~g~~------------------~~~~~~~~~l~~~G~iv~~G~~~ 127 (168)
T d1uufa2 95 DFILNTVAAP------------------HNLDDFTTLLKRDGTMTLVGAPA 127 (168)
T ss_dssp EEEEECCSSC------------------CCHHHHHTTEEEEEEEEECCCC-
T ss_pred ceeeeeeecc------------------hhHHHHHHHHhcCCEEEEeccCC
Confidence 9988642211 12345677999999999976543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.01 E-value=0.1 Score=39.26 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=33.3
Q ss_pred CCCCCCeEEEEcCCCCh-HHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHH
Q 022698 112 DWSTVKTALDIGCGRGI-LLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT 162 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~-~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~ 162 (293)
+.+++.+|+=+|||... .+..+++... ..+|+++|.+++.++.|++.
T Consensus 26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G----~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 26 KVKPGSTCVVFGLGGVGLSVIMGCKSAG----ASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEECSCGGGHHHHHHH
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcC----CceEEEecCcHHHHHHHHhc
Confidence 46788899999987633 3333333322 36999999999988887766
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.99 E-value=0.05 Score=40.84 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=61.8
Q ss_pred hcCCCCCCCeEEEEcCCC--ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---
Q 022698 109 SVNDWSTVKTALDIGCGR--GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--- 183 (293)
Q Consensus 109 ~~~~~~~~~~vLDiG~G~--G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 183 (293)
...++.++.+||=.|+|. |..+..+++.. +++|++++.|++..+.+++. |.. +++..+-.++.
T Consensus 22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-----Ga~Vi~~~~s~~k~~~~~~l----Ga~---~vi~~~~~d~~~~v 89 (179)
T d1qora2 22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-----GAKLIGTVGTAQKAQSALKA----GAW---QVINYREEDLVERL 89 (179)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHH
T ss_pred HHhCCCCCCEEEEEccccccchHHHHHHHHh-----CCeEeecccchHHHHHHHhc----CCe---EEEECCCCCHHHHH
Confidence 344567788999886664 55666666554 47999999999987776643 432 23322212111
Q ss_pred --C-CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 --F-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 --~-~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
. ....+|+|+....- ..+......++++|+++++.
T Consensus 90 ~~~t~g~g~d~v~d~~g~-------------------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 90 KEITGGKKVRVVYDSVGR-------------------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp HHHTTTCCEEEEEECSCG-------------------GGHHHHHHTEEEEEEEEECC
T ss_pred HHHhCCCCeEEEEeCccH-------------------HHHHHHHHHHhcCCeeeecc
Confidence 1 23568988865321 23456778999999988754
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=94.71 E-value=0.24 Score=39.29 Aligned_cols=80 Identities=20% Similarity=0.203 Sum_probs=60.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++.+|=-|+ ++.++..+++.+.+. +++|+.+|.+++.++.+.+..+..+ .++.++.+|+.+.. + .
T Consensus 10 nKvalITGa-s~GIG~a~a~~la~~--Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 84 (251)
T d2c07a1 10 NKVALVTGA-GRGIGREIAKMLAKS--VSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTE 84 (251)
T ss_dssp SCEEEEEST-TSHHHHHHHHHHTTT--SSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHh
Confidence 556676675 556899999998876 4699999999999988887777655 34889999997632 0 1
Q ss_pred CCcccEEEecchhhh
Q 022698 186 DNYFDVVVSAAFFHT 200 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~ 200 (293)
-++.|++|.|.....
T Consensus 85 ~g~iDilvnnag~~~ 99 (251)
T d2c07a1 85 HKNVDILVNNAGITR 99 (251)
T ss_dssp CSCCCEEEECCCCCC
T ss_pred cCCceeeeecccccc
Confidence 268999998866543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.67 E-value=0.083 Score=39.06 Aligned_cols=104 Identities=10% Similarity=0.121 Sum_probs=62.7
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecch
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAF 197 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~ 197 (293)
+|.=||+ |..+..+++.+.+. +.+|+++|.+++.++.+++ .+..+ ....+... -...|+|+..-|
T Consensus 2 kI~iIG~--G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~~~----~~~~DiIilavp 66 (165)
T d2f1ka2 2 KIGVVGL--GLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVE----RQLVD---EAGQDLSL----LQTAKIIFLCTP 66 (165)
T ss_dssp EEEEECC--SHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTSCS---EEESCGGG----GTTCSEEEECSC
T ss_pred EEEEEee--cHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHH----hhccc---eeeeeccc----ccccccccccCc
Confidence 4556665 66777777777655 3599999999987766544 33211 12222222 135799997644
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcC
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELK 252 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~g 252 (293)
.. ....+++++...++++-.++-.... .......+.+..
T Consensus 67 ~~---------------~~~~vl~~l~~~l~~~~iv~~~~s~-~~~~~~~~~~~~ 105 (165)
T d2f1ka2 67 IQ---------------LILPTLEKLIPHLSPTAIVTDVASV-KTAIAEPASQLW 105 (165)
T ss_dssp HH---------------HHHHHHHHHGGGSCTTCEEEECCSC-CHHHHHHHHHHS
T ss_pred Hh---------------hhhhhhhhhhhhcccccceeecccc-chHHHHHHHHhh
Confidence 32 4557889999889988876544333 233444444443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.64 E-value=0.045 Score=40.57 Aligned_cols=97 Identities=14% Similarity=-0.014 Sum_probs=55.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CCCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FGDN 187 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~ 187 (293)
..++.+||=.|+|+-... .+...... +++|+++|.+++.++.+++ .|.. .+....-.+.. ...+
T Consensus 25 ~~~g~~vlv~G~G~iG~~--a~~~a~~~--g~~v~~~~~~~~r~~~~k~----~Ga~---~~~~~~~~~~~~~~~~~~~~ 93 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHV--AVQYAKAM--GLNVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKVGG 93 (168)
T ss_dssp CCTTCEEEEECCSTTHHH--HHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHHSS
T ss_pred CCCCCEEEEeecccchhh--hhHHHhcC--CCeEeccCCCHHHhhhhhh----cCcc---eecccccchhhhhcccccCC
Confidence 567889999988774333 22222222 4689999999997776654 3432 22211111110 1123
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
.+|+|++. +- ...+....+.|+|+|.++++...
T Consensus 94 ~~~~v~~~-~~------------------~~~~~~a~~~l~~~G~i~~~g~~ 126 (168)
T d1rjwa2 94 VHAAVVTA-VS------------------KPAFQSAYNSIRRGGACVLVGLP 126 (168)
T ss_dssp EEEEEESS-CC------------------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred CceEEeec-CC------------------HHHHHHHHHHhccCCceEecccc
Confidence 34444432 11 24567788899999999986543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.58 E-value=0.034 Score=42.00 Aligned_cols=99 Identities=17% Similarity=0.134 Sum_probs=59.2
Q ss_pred HhcCCCCCCCeEEEEcC--CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--
Q 022698 108 GSVNDWSTVKTALDIGC--GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-- 183 (293)
Q Consensus 108 ~~~~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 183 (293)
....++.++.+||=.|+ |.|..+..+++.. ++++++++-+++-.+.++ ..|.. ..+..+-.++.
T Consensus 18 ~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-----g~~vi~~~~~~~~~~~l~----~~Ga~---~vi~~~~~~~~~~ 85 (183)
T d1pqwa_ 18 CEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-----GARIYTTAGSDAKREMLS----RLGVE---YVGDSRSVDFADE 85 (183)
T ss_dssp HTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHH----TTCCS---EEEETTCSTHHHH
T ss_pred HHHhCCCCCCEEEEECCCCCcccccchhhccc-----cccceeeecccccccccc----ccccc---ccccCCccCHHHH
Confidence 33445677889998773 2244555555443 468999988887665554 34542 22222211110
Q ss_pred ----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 ----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 ----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.....||+|+.... ...++.+.++|+++|+++.+.
T Consensus 86 v~~~t~~~g~d~v~d~~g-------------------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 86 ILELTDGYGVDVVLNSLA-------------------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp HHHHTTTCCEEEEEECCC-------------------THHHHHHHHTEEEEEEEEECS
T ss_pred HHHHhCCCCEEEEEeccc-------------------chHHHHHHHHhcCCCEEEEEc
Confidence 12356999997532 134566778999999999864
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.49 E-value=0.067 Score=45.32 Aligned_cols=81 Identities=11% Similarity=0.135 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhc---CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKT---GSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~---~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
+..+|+|+|+|+|.++..++..+... ....+++.+|+|+...+.-++++... .++.+. .++...+ . ..-+
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~---~~i~w~-~~~~~~~--~-~~g~ 151 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHWH-DSFEDVP--E-GPAV 151 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEEE-SSGGGSC--C-SSEE
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc---ccceec-cChhhcc--c-CCeE
Confidence 44579999999999999887765321 11357999999998655555554422 235443 4444433 1 2368
Q ss_pred EEecchhhhhc
Q 022698 192 VVSAAFFHTVG 202 (293)
Q Consensus 192 Iv~~~~~~~~~ 202 (293)
|+||..+..+|
T Consensus 152 iiaNE~fDAlP 162 (365)
T d1zkda1 152 ILANEYFDVLP 162 (365)
T ss_dssp EEEESSGGGSC
T ss_pred EEecccCcccc
Confidence 88888877666
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=94.45 E-value=0.078 Score=40.31 Aligned_cols=109 Identities=11% Similarity=0.106 Sum_probs=60.7
Q ss_pred HHHhcCCCCCCCeEEEEcCCCChH---HHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 106 MVGSVNDWSTVKTALDIGCGRGIL---LNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~G~~---~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
.+.......++.+||=+.+|+|.. +..+++.. +++++++--+++..+...+.++..|....+.....|..+.
T Consensus 19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~-----Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~ 93 (189)
T d1gu7a2 19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL-----NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREF 93 (189)
T ss_dssp HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH-----TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGG
T ss_pred HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc-----CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHH
Confidence 344444567777888875555544 44455443 4688887655555555555666666532111111122211
Q ss_pred C--------CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 183 P--------FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 183 ~--------~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
. ...+.+|+|+-. +. ...+....+.|+|+|+++.+..
T Consensus 94 ~~~v~~~~~~~g~~vdvv~D~-----vg--------------~~~~~~~~~~l~~~G~~v~~G~ 138 (189)
T d1gu7a2 94 GPTIKEWIKQSGGEAKLALNC-----VG--------------GKSSTGIARKLNNNGLMLTYGG 138 (189)
T ss_dssp HHHHHHHHHHHTCCEEEEEES-----SC--------------HHHHHHHHHTSCTTCEEEECCC
T ss_pred HHHHHHHHhhccCCceEEEEC-----CC--------------cchhhhhhhhhcCCcEEEEECC
Confidence 0 013458888843 11 1234567789999999998753
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.45 E-value=0.097 Score=39.40 Aligned_cols=101 Identities=14% Similarity=0.027 Sum_probs=62.4
Q ss_pred HHHhcCCCCCCCeEEEEcCCC--ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 106 MVGSVNDWSTVKTALDIGCGR--GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~--G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
.+....+..++.+||=.|++. |..+..+++.. +++|++++-+++..+.+++. +.. .++..+-.+..
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-----Ga~vi~~~~~~~~~~~~~~~----Ga~---~vi~~~~~~~~ 87 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-----GCKVVGAAGSDEKIAYLKQI----GFD---AAFNYKTVNSL 87 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCSCH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-----CCEEEEeCCCHHHHHHHHhh----hhh---hhcccccccHH
Confidence 344445567889999777655 44444444443 47999999998866555543 432 22322222211
Q ss_pred ------CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 ------FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 ------~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.....+|+|+-.-. ...+++..+.|+|+|.++.+.
T Consensus 88 ~~~~~~~~~~Gvd~v~D~vG-------------------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 88 EEALKKASPDGYDCYFDNVG-------------------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp HHHHHHHCTTCEEEEEESSC-------------------HHHHHHHGGGEEEEEEEEECC
T ss_pred HHHHHHhhcCCCceeEEecC-------------------chhhhhhhhhccCCCeEEeec
Confidence 12345999886421 246678899999999999865
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.64 E-value=0.16 Score=40.34 Aligned_cols=79 Identities=25% Similarity=0.180 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCCC-hHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----
Q 022698 115 TVKTALDIGCGRG-ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F---- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G-~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 184 (293)
.++++|=-|++++ .++..+++.+.+.| ++|+..+.++...+.+.+.....+ +..++.+|+.+.. +
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~G--a~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~ 81 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAG--AEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAGVK 81 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCC--CEEEEEeCcHHHHHHHHHhhhccC---cccccccccCCHHHHHHHHHHHH
Confidence 4678899987663 57888888887764 689999999887777666655543 3577889987632 0
Q ss_pred -CCCcccEEEecchh
Q 022698 185 -GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 -~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|..+
T Consensus 82 ~~~g~iDilVnnag~ 96 (256)
T d1ulua_ 82 EAFGGLDYLVHAIAF 96 (256)
T ss_dssp HHHSSEEEEEECCCC
T ss_pred HhcCCceEEEecccc
Confidence 12679999977544
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.48 Score=37.32 Aligned_cols=81 Identities=19% Similarity=0.023 Sum_probs=60.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------CC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------FG 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 185 (293)
++.+|=-|+ ++.++..++..+.+.| ++|+.+|.+++.++...+.....+ .++..+.+|+.+.. ..
T Consensus 7 Gkv~lITGa-s~GIG~~ia~~la~~G--~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~ 81 (244)
T d1yb1a_ 7 GEIVLITGA-GHGIGRLTAYEFAKLK--SKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE 81 (244)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 445665555 5567888988888774 699999999999998888877665 45889999998742 02
Q ss_pred CCcccEEEecchhhhh
Q 022698 186 DNYFDVVVSAAFFHTV 201 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~ 201 (293)
-+..|+++.|......
T Consensus 82 ~g~idilinnag~~~~ 97 (244)
T d1yb1a_ 82 IGDVSILVNNAGVVYT 97 (244)
T ss_dssp TCCCSEEEECCCCCCC
T ss_pred cCCCceeEeecccccc
Confidence 3679999988765543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=93.32 E-value=0.5 Score=37.52 Aligned_cols=79 Identities=19% Similarity=0.153 Sum_probs=59.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=-|+ ++.++..+++.+.+.| ++|+.+|.+++.++.+.+.++..+ .++..+.+|+.+.. +
T Consensus 4 ~gK~alITGa-s~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (260)
T d1zema1 4 NGKVCLVTGA-GGNIGLATALRLAEEG--TAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVR 78 (260)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3567776664 5667888888887764 699999999999998888777665 34888999997632 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|...
T Consensus 79 ~~g~iDilVnnaG~ 92 (260)
T d1zema1 79 DFGKIDFLFNNAGY 92 (260)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HhCCCCeehhhhcc
Confidence 12679999987553
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.27 E-value=0.36 Score=35.63 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=57.6
Q ss_pred CCCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------
Q 022698 111 NDWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------ 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 183 (293)
....++.+||=.|||. |..+..+++... ..+|+++|.++..++.+++. |.. .++..+-....
T Consensus 24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G----~~~vi~~~~~~~k~~~ak~l----Ga~---~~i~~~~~~~~~~~~~~ 92 (176)
T d2fzwa2 24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG----ASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLI 92 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT----CSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHH
T ss_pred hCCCCCCEEEEecchhHHHHHHHHHHHHh----cCceEEEcccHHHHHHHHHh----CCc---EEEeCCchhhHHHHHHH
Confidence 3467889999998873 223333333332 36899999999977766654 432 23222111101
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
...+.+|+|+-...- ...++.+..++++||.++++
T Consensus 93 ~~~~~g~D~vid~~G~------------------~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 93 EMTDGGVDYSFECIGN------------------VKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp HHTTSCBSEEEECSCC------------------HHHHHHHHHTBCTTTCEEEE
T ss_pred HHcCCCCcEeeecCCC------------------HHHHHHHHHhhcCCceeEEE
Confidence 123569999975321 24556778889998876654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=93.18 E-value=0.57 Score=32.78 Aligned_cols=106 Identities=13% Similarity=0.045 Sum_probs=65.6
Q ss_pred CCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC----CCCcccEEEecchhh
Q 022698 124 CGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF----GDNYFDVVVSAAFFH 199 (293)
Q Consensus 124 ~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~Iv~~~~~~ 199 (293)
||-|.++..+++.+.+.| .+|+.+|.+++.++.++ ..+ ...+.+|..+... .-...|.+++..+=.
T Consensus 6 iG~G~~G~~la~~L~~~g--~~vvvid~d~~~~~~~~----~~~----~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~ 75 (134)
T d2hmva1 6 IGLGRFGGSIVKELHRMG--HEVLAVDINEEKVNAYA----SYA----THAVIANATEENELLSLGIRNFEYVIVAIGAN 75 (134)
T ss_dssp ECCSHHHHHHHHHHHHTT--CCCEEEESCHHHHHHTT----TTC----SEEEECCTTCTTHHHHHTGGGCSEEEECCCSC
T ss_pred ECCCHHHHHHHHHHHHCC--CeEEEecCcHHHHHHHH----HhC----CcceeeecccchhhhccCCccccEEEEEcCch
Confidence 356889999999988764 69999999999776553 222 3566788876431 123578776642211
Q ss_pred hhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 200 TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
+....+-...+.+.+...++.. ...++..+.|++.|-..+
T Consensus 76 ---------------~~~~~~~~~~~~~~~~~~iiar--~~~~~~~~~l~~~Gad~v 115 (134)
T d2hmva1 76 ---------------IQASTLTTLLLKELDIPNIWVK--AQNYYHHKVLEKIGADRI 115 (134)
T ss_dssp ---------------HHHHHHHHHHHHHTTCSEEEEE--CCSHHHHHHHHHHTCSEE
T ss_pred ---------------HHhHHHHHHHHHHcCCCcEEee--cccHhHHHHHHHCCCCEE
Confidence 2223333334445565665442 245678888899886543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=93.13 E-value=0.63 Score=36.89 Aligned_cols=80 Identities=15% Similarity=0.041 Sum_probs=58.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=-|+ ++.++..+++.+.+.| ++|+.+|.+++.++.+.+.....+...++.++.+|+.+.. + .
T Consensus 4 gK~alITGa-s~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 4 DRVVLITGG-GSGLGRATAVRLAAEG--AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 456776775 4567888888887764 7999999999998887777665544456889999997632 0 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|..+
T Consensus 81 ~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 81 FGRIDGFFNNAGI 93 (258)
T ss_dssp HSCCSEEEECCCC
T ss_pred hCCCCEEEECCcc
Confidence 2679999988654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.12 E-value=0.015 Score=47.11 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=52.9
Q ss_pred EEEEcCCCCC--CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------C
Q 022698 173 TAREGDVRSL--PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----------H 240 (293)
Q Consensus 173 ~~~~~d~~~~--~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------~ 240 (293)
.|+.+|..+. .++++++|+|+..|||....... .......+.....++++.|+|||+|.+++.... .
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~-~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~ 84 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADW-DDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDL 84 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGG-GTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCH
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccc-cCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccch
Confidence 4666776653 25689999999999985322111 011111234567889999999999998873221 1
Q ss_pred chHHHHHHHHcCCcceEE
Q 022698 241 VPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 241 ~~~~~~~l~~~gf~~~~~ 258 (293)
.......+...||.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~ 102 (279)
T d1eg2a_ 85 ISIISHMRQNSKMLLANL 102 (279)
T ss_dssp HHHHHHHHHHCCCEEEEE
T ss_pred hhHHHHHHhccCceeeee
Confidence 123455567788875544
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=93.02 E-value=0.15 Score=43.56 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=44.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV 168 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~ 168 (293)
+.++..++|+|+-.|..+..+++..+.. ..+|+++|+++...+..++|.+.+..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~--~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGK--FERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSC--CSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCC--CCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 4567799999999999988887766532 35999999999999999999887653
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=92.99 E-value=0.56 Score=37.35 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=-|++ +.++..+++.+.+.| ++|+.+|.+++.++.+.+..... +++.++.+|+.+.. +
T Consensus 5 ~gKvalITGas-~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (268)
T d2bgka1 5 QDKVAIITGGA-GGIGETTAKLFVRYG--AKVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIA 78 (268)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCCHHHHHHHHHHHHH
Confidence 45678888865 558888988887764 69999999999887766665433 44788899987632 1
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 79 ~~g~iD~lVnnAG~~ 93 (268)
T d2bgka1 79 KHGKLDIMFGNVGVL 93 (268)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCcceeccccccc
Confidence 126799999886543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.94 E-value=0.016 Score=44.08 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHH
Q 022698 115 TVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT 162 (293)
Q Consensus 115 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~ 162 (293)
++.+|+=||+|. |..++..+..+ ++.|+++|+++..++..+..
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-----GA~V~v~D~~~~~~~~l~~l 71 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-----GAVVMATDVRAATKEQVESL 71 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-----TCEEEEECSCSTTHHHHHHT
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-----CCEEEEEeccHHHHHHHHHh
Confidence 467999999998 55555555554 57999999999977777655
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=92.93 E-value=1.1 Score=35.24 Aligned_cols=80 Identities=18% Similarity=0.111 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=-|+ ++.++..+++.+.+.| ++|+.+|.+++.++.+.+.....+ .++.++.+|+.+.. +
T Consensus 7 ~GK~alITGa-s~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d2ae2a_ 7 EGCTALVTGG-SRGIGYGIVEELASLG--ASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVAN 81 (259)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHH
Confidence 3567777775 5678888888888764 699999999999988887777665 45788899997632 0
Q ss_pred C-CCcccEEEecchhh
Q 022698 185 G-DNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~-~~~fD~Iv~~~~~~ 199 (293)
. .++.|++|.|....
T Consensus 82 ~~~~~idilvnnAG~~ 97 (259)
T d2ae2a_ 82 HFHGKLNILVNNAGIV 97 (259)
T ss_dssp HTTTCCCEEEECCCCC
T ss_pred HhCCCceEEEECCcee
Confidence 1 24799999886654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=92.65 E-value=0.5 Score=37.37 Aligned_cols=77 Identities=22% Similarity=0.110 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=-| |++.++..+++.+.+.| ++|+.+|.+++.++.+.+.. + .+..++.+|+.+.. +
T Consensus 5 ~gK~alITG-as~GIG~aia~~la~~G--a~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~ 76 (253)
T d1hxha_ 5 QGKVALVTG-GASGVGLEVVKLLLGEG--AKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHH
Confidence 355677666 55668888988888764 69999999998877665543 2 34778889987632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 77 ~~g~iDilVnnAG~~ 91 (253)
T d1hxha_ 77 RLGTLNVLVNNAGIL 91 (253)
T ss_dssp HHCSCCEEEECCCCC
T ss_pred HhCCCCeEEeccccc
Confidence 126799999986653
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.59 E-value=0.83 Score=35.95 Aligned_cols=79 Identities=22% Similarity=0.106 Sum_probs=56.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH-HhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA-KMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~-~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=-|++ +.++..+++.+.+.| ++|+.+|.+++.++.+.+.. +..+ .++.++.+|+.+.. +
T Consensus 5 gK~~lITGas-~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 5 GRVALVTGGS-RGLGFGIAQGLAEAG--CSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 5677777755 568888888888764 69999999998887666554 3334 34788899997632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 80 ~~g~iDiLVnnAG~~ 94 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGIN 94 (251)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 125799999886543
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.43 E-value=1.2 Score=31.62 Aligned_cols=129 Identities=19% Similarity=0.104 Sum_probs=60.6
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHH-HHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTL-STLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~-~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
+|-=||+ |..+..++..+...+-..++..+|++++.++ .+...........+......|..++ ...|+|+...
T Consensus 2 KI~IIGa--G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~----~~adivvita 75 (140)
T d1a5za1 2 KIGIVGL--GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADL----KGSDVVIVAA 75 (140)
T ss_dssp EEEEECC--SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGG----TTCSEEEECC
T ss_pred EEEEECc--CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHh----cCCCEEEEec
Confidence 4555776 4555555544443333469999999987655 2222222222223355555554443 2368888764
Q ss_pred hhhhhccccCcchhhhHHHHHHHHHHHH---HcccCCcEEEEEcCCCchHHHHHHHHcCCcc
Q 022698 197 FFHTVGKEYGHRTVEAAAERMRVLGEMV---RVLKPGGVGVVWDLLHVPEYVRRLQELKMED 255 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~ 255 (293)
.....+.....+... .+ ...++++. ....|+++++++...-.--.....+..||..
T Consensus 76 g~~~~~g~~r~dl~~--~N-~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~~k~sg~p~ 134 (140)
T d1a5za1 76 GVPQKPGETRLQLLG--RN-ARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDP 134 (140)
T ss_dssp CCCCCSSCCHHHHHH--HH-HHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCT
T ss_pred ccccCCCcchhhhhc--cc-cchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHHHHHHCcCc
Confidence 332222111111111 11 22333333 2346899887754322111222334556643
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=92.42 E-value=0.6 Score=33.58 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=70.7
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEEE
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVVV 193 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~Iv 193 (293)
+|+=+|+ |..+..+++.+.+.+ ..++.+|.+++......+.....+ +.++.+|..+.. ..-.+.|.|+
T Consensus 5 HiII~G~--g~~g~~l~~~L~~~~--~~v~vId~d~~~~~~~~~~~~~~~----~~vi~Gd~~d~~~L~~a~i~~a~~vi 76 (153)
T d1id1a_ 5 HFIVCGH--SILAINTILQLNQRG--QNVTVISNLPEDDIKQLEQRLGDN----ADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHCTT----CEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred EEEEECC--CHHHHHHHHHHHHcC--CCEEEEeccchhHHHHHHHhhcCC----cEEEEccCcchHHHHHhccccCCEEE
Confidence 4555554 788999999887664 589999999875443333333322 788999987632 1224678888
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
+...-. ..........+.+.|...++..- ..++..+.+++.|-..+
T Consensus 77 ~~~~~d---------------~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~~Gad~v 122 (153)
T d1id1a_ 77 ALSDND---------------ADNAFVVLSAKDMSSDVKTVLAV--SDSKNLNKIKMVHPDII 122 (153)
T ss_dssp ECSSCH---------------HHHHHHHHHHHHHTSSSCEEEEC--SSGGGHHHHHTTCCSEE
T ss_pred EccccH---------------HHHHHHHHHHHHhCCCCceEEEE--cCHHHHHHHHHCCCCEE
Confidence 753211 12223333455667776655532 35677788888886544
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.24 E-value=0.55 Score=37.17 Aligned_cols=117 Identities=16% Similarity=0.091 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEE-eCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGL-DCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---------- 183 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~v-Dis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---------- 183 (293)
.++++|=-| |++.++.++++.+.+.| ++|+.. +.+++.++.+.+.....+. ++.++.+|+.+..
T Consensus 5 ~GK~alITG-as~GIG~aia~~la~~G--~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 5 AGKVALTTG-AGRGIGRGIAIELGRRG--ASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHcC--CEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHH
Confidence 356778555 67888999998887764 577764 5677777888877777663 4889999997632
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHH-------HHHHHHHHHHHcccCCcEEEEE
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAA-------ERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
..-+..|++|.|....+..+........... .+..+.+.+...++.+|..+++
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 80 SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 0125799999987654333211111111111 1123556666777887776663
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.09 E-value=0.84 Score=35.83 Aligned_cols=78 Identities=18% Similarity=0.012 Sum_probs=55.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=-|++ +.++..+++.+.+.| ++|+.+|.+++.++.+.+... +++.++.+|+.+.. +
T Consensus 5 ~gK~alITGas-~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (244)
T d1nffa_ 5 TGKVALVSGGA-RGMGASHVRAMVAEG--AKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVT 76 (244)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHHH
Confidence 35677777765 557888888887764 699999999987776655542 44788899987632 0
Q ss_pred CCCcccEEEecchhhh
Q 022698 185 GDNYFDVVVSAAFFHT 200 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~ 200 (293)
.-++.|++|.|.....
T Consensus 77 ~~g~idilinnAG~~~ 92 (244)
T d1nffa_ 77 AFGGLHVLVNNAGILN 92 (244)
T ss_dssp HHSCCCEEEECCCCCC
T ss_pred HhCCCeEEEECCcccC
Confidence 1257999998866543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=91.95 E-value=1.3 Score=34.61 Aligned_cols=76 Identities=17% Similarity=0.101 Sum_probs=54.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=-|+ ++.++..+++.+.+.| ++|+.+|.+++.++...+... .+...+.+|+.+.. + .
T Consensus 4 gK~alITGa-s~GIG~a~a~~l~~~G--~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 4 GKIALVTGA-SRGIGRAIAETLAARG--AKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp TCEEEESSC-SSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 455666664 5678888988887764 699999999998876665543 34678889987632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 76 ~g~iDilVnnAg~~ 89 (243)
T d1q7ba_ 76 FGEVDILVNNAGIT 89 (243)
T ss_dssp TCSCSEEEECCCCC
T ss_pred cCCcceehhhhhhc
Confidence 26799999886543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.83 E-value=1.5 Score=34.47 Aligned_cols=81 Identities=17% Similarity=0.123 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----C
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----G 185 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~ 185 (293)
.++++|=-|+ ++.++..+++.+.+.| ++|+.+|.+++.++.+.+.....+ .++.++.+|+.+.. + .
T Consensus 7 kgK~alVTGa-s~GIG~aiA~~la~~G--a~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d1xq1a_ 7 KAKTVLVTGG-TKGIGHAIVEEFAGFG--AVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSS 81 (259)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHH
Confidence 3567777775 5667888888887764 699999999999888877776655 34889999997532 0 1
Q ss_pred --CCcccEEEecchhhh
Q 022698 186 --DNYFDVVVSAAFFHT 200 (293)
Q Consensus 186 --~~~fD~Iv~~~~~~~ 200 (293)
.++.|++|.|.....
T Consensus 82 ~~~g~idilvnnAG~~~ 98 (259)
T d1xq1a_ 82 MFGGKLDILINNLGAIR 98 (259)
T ss_dssp HHTTCCSEEEEECCC--
T ss_pred HhCCCcccccccccccC
Confidence 267999999866543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.54 Score=37.14 Aligned_cols=76 Identities=21% Similarity=0.105 Sum_probs=54.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=-|++ +.++..+++.+.+.| ++|+.+|.+++.++...+.. +++.++.+|+.+.. +
T Consensus 5 ~GK~alITGas-~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~ 75 (250)
T d1ydea1 5 AGKVVVVTGGG-RGIGAGIVRAFVNSG--ARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIR 75 (250)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHH
Confidence 35677877765 568888888887764 69999999998776655432 23778899987632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 76 ~~g~iDilVnnAG~~ 90 (250)
T d1ydea1 76 RFGRLDCVVNNAGHH 90 (250)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred hcCCCCEEEeccccc
Confidence 126799999886643
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=91.76 E-value=0.56 Score=37.16 Aligned_cols=77 Identities=23% Similarity=0.060 Sum_probs=54.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=-|+++ .++..+++.+.+. +++|+.+|.+++.++...+.. ..++.++.+|+.+.. +
T Consensus 4 ~gK~alVTGas~-GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (254)
T d1hdca_ 4 SGKTVIITGGAR-GLGAEAARQAVAA--GARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp CCSEEEEETTTS-HHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCC-HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-----CCceEEEEcccCCHHHHHHHHHHHHH
Confidence 356778777665 5788888888776 469999999998766544332 245889999997632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 76 ~~g~iDilVnnAg~~ 90 (254)
T d1hdca_ 76 EFGSVDGLVNNAGIS 90 (254)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCccEEEecCccc
Confidence 125799999886543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=91.72 E-value=1.1 Score=35.38 Aligned_cols=81 Identities=20% Similarity=0.135 Sum_probs=60.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------- 183 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 183 (293)
.++++|=.|+ ++.++..+++.+.+.| ++|+.++.+++.++.+.+.....+. ++.++.+|+.+..
T Consensus 5 ~gK~alITGa-s~GIG~aia~~la~~G--~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 5 KGTTALVTGG-SKGIGYAIVEELAGLG--ARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHH
Confidence 4667888886 5678888888887764 6999999999998888888777663 4788899997632
Q ss_pred CCCCcccEEEecchhhh
Q 022698 184 FGDNYFDVVVSAAFFHT 200 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~ 200 (293)
...+..|++++|.....
T Consensus 80 ~~~g~idilinnag~~~ 96 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGVVI 96 (258)
T ss_dssp HTTSCCCEEEECCCCCC
T ss_pred HhCCCcEEEeccccccc
Confidence 11357899988765543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.59 E-value=1.9 Score=33.54 Aligned_cols=77 Identities=18% Similarity=0.134 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------CCCCc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------FGDNY 188 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~ 188 (293)
.++++|=-|++ +.++.++++.+.+.| ++|+.+|.+++.++...+.. +.+..++.|+.+.. -.-++
T Consensus 6 ~GK~~lITGas-~GIG~aia~~la~~G--~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~ 76 (244)
T d1pr9a_ 6 AGRRVLVTGAG-KGIGRGTVQALHATG--ARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGP 76 (244)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCC
Confidence 46788888855 568888888887764 69999999998776555432 23678889987632 12367
Q ss_pred ccEEEecchhhh
Q 022698 189 FDVVVSAAFFHT 200 (293)
Q Consensus 189 fD~Iv~~~~~~~ 200 (293)
.|++|.|.....
T Consensus 77 iDilVnnAg~~~ 88 (244)
T d1pr9a_ 77 VDLLVNNAAVAL 88 (244)
T ss_dssp CCEEEECCCCCC
T ss_pred ceEEEecccccc
Confidence 999998865543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.56 E-value=1.7 Score=34.34 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=72.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC-HHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK-KRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------F 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis-~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 184 (293)
++++|=-|+ ++.++..+++.+.+. +++|+.+|.+ ++.++...+..+..+ .++.+..+|+.+.. .
T Consensus 18 gK~~lITGa-s~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 18 GKVALVTGA-GRGIGREMAMELGRR--GCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp TCEEEETTT-TSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHc--CCEEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHH
Confidence 456776665 566788888888776 4699999987 556666666666665 34889999997632 0
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHH-------HHHHHHHHHHHcccCCcEEEEEc
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAA-------ERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.-++.|+++.|.......+-.........+ .+..+.+.+.+.|+.+|..+++.
T Consensus 93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 126789999886544332111111111100 11235666677888888777643
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.51 E-value=0.76 Score=36.50 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------C
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------F 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 184 (293)
.++++|=-|+++| ++.++++.+.+.| ++|+.++.+++.++.+.+....... ..+.+...|..+.. .
T Consensus 13 ~GK~alITGassG-IG~aiA~~la~~G--~~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 88 (269)
T d1xu9a_ 13 QGKKVIVTGASKG-IGREMAYHLAKMG--AHVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGK 88 (269)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHH
Confidence 3567887776655 8889999988774 6999999999999887766544332 34777788876532 0
Q ss_pred CCCcccEEEecchhhh
Q 022698 185 GDNYFDVVVSAAFFHT 200 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~ 200 (293)
..+..|+++.|.....
T Consensus 89 ~~g~~~~li~nag~~~ 104 (269)
T d1xu9a_ 89 LMGGLDMLILNHITNT 104 (269)
T ss_dssp HHTSCSEEEECCCCCC
T ss_pred HhCCcccccccccccc
Confidence 1256899888765543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.25 E-value=0.95 Score=33.26 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=56.4
Q ss_pred CCCCCCeEEEEcCCCChH-HHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-cCCCCCC------
Q 022698 112 DWSTVKTALDIGCGRGIL-LNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE-GDVRSLP------ 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~-~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~-~d~~~~~------ 183 (293)
..+++.+||=+|+|.+.. +..+++... ..+|+++|.+++-++.+++. +.. .++. .+..+..
T Consensus 25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g----~~~Vi~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~ 93 (176)
T d2jhfa2 25 KVTQGSTCAVFGLGGVGLSVIMGCKAAG----AARIIGVDINKDKFAKAKEV----GAT---ECVNPQDYKKPIQEVLTE 93 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHcC----CceEEeecCcHHHHHHHHHh----CCe---eEEecCCchhHHHHHHHH
Confidence 467889999999975332 333333322 46999999999977776655 322 2222 1211110
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC-cEEEEEc
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG-GVGVVWD 237 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 237 (293)
...+.+|+|+-..... ..++.+...++++ |.+++..
T Consensus 94 ~~~~G~D~vid~~G~~------------------~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 94 MSNGGVDFSFEVIGRL------------------DTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp HTTSCBSEEEECSCCH------------------HHHHHHHHHBCTTTCEEEECS
T ss_pred HhcCCCCEEEecCCch------------------hHHHHHHHHHhcCCcceEEec
Confidence 1235699999753322 3345566677776 5666543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.20 E-value=0.11 Score=39.16 Aligned_cols=99 Identities=18% Similarity=0.124 Sum_probs=58.5
Q ss_pred CCCCCCeEEEEcCCC--ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-C-CCCCC
Q 022698 112 DWSTVKTALDIGCGR--GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-L-PFGDN 187 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~--G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~ 187 (293)
...++.+||=-|++. |.+++.+++.. +++|+++.-|++..+.+++. |...-+. ...+..+ . ....+
T Consensus 28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~-----Ga~Viat~~s~~k~~~~~~l----Ga~~vi~-~~~~~~~~~~~~~~~ 97 (176)
T d1xa0a2 28 LTPERGPVLVTGATGGVGSLAVSMLAKR-----GYTVEASTGKAAEHDYLRVL----GAKEVLA-REDVMAERIRPLDKQ 97 (176)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHT-----TCCEEEEESCTTCHHHHHHT----TCSEEEE-CC---------CCSC
T ss_pred CCCCCCEEEEEeccchHHHHHHHHHHHc-----CCceEEecCchHHHHHHHhc----ccceeee-cchhHHHHHHHhhcc
Confidence 345677898887544 44555555543 47999999988877666543 3321111 1111111 0 12346
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
.+|+|+-+-. ...+....++|+|||+++.+...
T Consensus 98 gvD~vid~vg-------------------g~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 98 RWAAAVDPVG-------------------GRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp CEEEEEECST-------------------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred CcCEEEEcCC-------------------chhHHHHHHHhCCCceEEEeecc
Confidence 7999886522 12456678899999999987654
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.13 E-value=0.91 Score=35.75 Aligned_cols=75 Identities=24% Similarity=0.147 Sum_probs=56.8
Q ss_pred EEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----CCCcc
Q 022698 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----GDNYF 189 (293)
Q Consensus 120 LDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~~f 189 (293)
|=-| |++.++..+++.+.+.| ++|+.+|.+++.++.+.+.....+ .++.++.+|+.+.. + .-++.
T Consensus 5 lITG-as~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (255)
T d1gega_ 5 LVTG-AGQGIGKAIALRLVKDG--FAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGF 79 (255)
T ss_dssp EEET-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred EEcC-CccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 4455 55778889999888764 699999999999988887777665 35888999998632 0 12679
Q ss_pred cEEEecchhh
Q 022698 190 DVVVSAAFFH 199 (293)
Q Consensus 190 D~Iv~~~~~~ 199 (293)
|++|.|..+.
T Consensus 80 DilVnnAG~~ 89 (255)
T d1gega_ 80 DVIVNNAGVA 89 (255)
T ss_dssp CEEEECCCCC
T ss_pred cEEEeccccc
Confidence 9999886543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.12 E-value=0.71 Score=34.51 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=58.9
Q ss_pred hcCCCCCC--CeEEEEc--CCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-
Q 022698 109 SVNDWSTV--KTALDIG--CGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP- 183 (293)
Q Consensus 109 ~~~~~~~~--~~vLDiG--~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~- 183 (293)
...+.+++ .+||=.| .|.|.+++.+++.+. ...|+++..+++....+.+ ..+.. .++...-.++.
T Consensus 22 ~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~G----a~~vi~~~~~~e~~~~l~~---~~gad---~vi~~~~~~~~~ 91 (187)
T d1vj1a2 22 EKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLG----CSRVVGICGTQEKCLFLTS---ELGFD---AAVNYKTGNVAE 91 (187)
T ss_dssp HHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTT----CSEEEEEESSHHHHHHHHH---HSCCS---EEEETTSSCHHH
T ss_pred HHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcC----CcceecccchHHHHhhhhh---cccce---EEeeccchhHHH
Confidence 33344444 6788877 456888888887764 2468888888764443322 23332 22222211111
Q ss_pred ----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 ----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 ----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.....+|+|+-.-. ...++...+.|+|+|+++.+.
T Consensus 92 ~~~~~~~~GvDvv~D~vG-------------------g~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 92 QLREACPGGVDVYFDNVG-------------------GDISNTVISQMNENSHIILCG 130 (187)
T ss_dssp HHHHHCTTCEEEEEESSC-------------------HHHHHHHHTTEEEEEEEEEC-
T ss_pred HHHHHhccCceEEEecCC-------------------chhHHHHhhhccccccEEEec
Confidence 12345999985421 245677889999999998865
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=91.00 E-value=0.98 Score=35.56 Aligned_cols=76 Identities=28% Similarity=0.231 Sum_probs=57.3
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----CCC
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----GDN 187 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 187 (293)
.+|=-| |++.++..+++.+.+.| ++|+.+|.+++.++.+.+..+..+ .++.++.+|+.+.. + .-+
T Consensus 4 ValITG-as~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 4 VALVTG-ATSGIGLEIARRLGKEG--LRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp EEEEES-CSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred EEEEeC-CCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 335555 56778899999888764 699999999999998888777665 34889999997632 0 126
Q ss_pred cccEEEecchh
Q 022698 188 YFDVVVSAAFF 198 (293)
Q Consensus 188 ~fD~Iv~~~~~ 198 (293)
+.|++|.|...
T Consensus 79 ~iDilVnnAG~ 89 (257)
T d2rhca1 79 PVDVLVNNAGR 89 (257)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEecccc
Confidence 79999988654
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.93 E-value=0.39 Score=37.99 Aligned_cols=81 Identities=19% Similarity=0.095 Sum_probs=59.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++.+|=-|+ ++.++..+++.+.+.| ++|+.+|.+++.++.+.+.........++.++.+|+.+.. + .
T Consensus 3 GKvalITGa-s~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 3 GKVALVTGA-AQGIGRAFAEALLLKG--AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 456777775 5668899999988764 6999999999988877766654433356889999998732 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 80 ~G~iDilVnnAg~~ 93 (254)
T d2gdza1 80 FGRLDILVNNAGVN 93 (254)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCcCeeccccccc
Confidence 26799999886554
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=90.92 E-value=0.072 Score=43.56 Aligned_cols=65 Identities=26% Similarity=0.260 Sum_probs=43.4
Q ss_pred eEEEEcCCCCC--CCCCCcccEEEecchhhhhcc-ccCcc-hhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 172 VTAREGDVRSL--PFGDNYFDVVVSAAFFHTVGK-EYGHR-TVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 172 v~~~~~d~~~~--~~~~~~fD~Iv~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
-.++++|..+. .++++++|+|+..|||..... ..+.. .....+.....+++++++|+|+|.+++.
T Consensus 13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~ 81 (320)
T d1booa_ 13 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 81 (320)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence 36788887652 256889999999999964321 11111 1111223566899999999999998873
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=90.64 E-value=1.6 Score=34.14 Aligned_cols=78 Identities=18% Similarity=0.119 Sum_probs=56.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=-| |++.++..+++.+.+.| ++|+.+|.+++.++.+.+.... ..++.++.+|+.+.. + .
T Consensus 6 gK~alVTG-as~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 6 GKVAIITG-GTLGIGLAIATKFVEEG--AKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45666666 56678888988888764 6999999999988777666532 345889999998632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 80 ~G~iDiLVnnAg~~ 93 (251)
T d1zk4a1 80 FGPVSTLVNNAGIA 93 (251)
T ss_dssp HSSCCEEEECCCCC
T ss_pred hCCceEEEeccccc
Confidence 26799999886554
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=90.63 E-value=0.51 Score=35.51 Aligned_cols=87 Identities=14% Similarity=0.011 Sum_probs=57.7
Q ss_pred HHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--
Q 022698 106 MVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-- 183 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 183 (293)
+.+....--.+++||=.|+ +|.++..+++.+.+.| ++|+.++.+++.++.+.+...... ++.+...|..+..
T Consensus 13 ~~~~~~~~l~gK~vlItGa-sgGIG~~ia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~ 86 (191)
T d1luaa1 13 VVKAAGGSVKGKKAVVLAG-TGPVGMRSAALLAGEG--AEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASR 86 (191)
T ss_dssp HHHHTTSCCTTCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHH
T ss_pred HHHHcCCCCCCCEEEEECC-CHHHHHHHHHHHHhhc--cchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHH
Confidence 4444433335778888875 5567888888887764 699999999998887777665532 2445566665421
Q ss_pred -CCCCcccEEEecchh
Q 022698 184 -FGDNYFDVVVSAAFF 198 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~ 198 (293)
-.-+..|++++|...
T Consensus 87 ~~~~~~iDilin~Ag~ 102 (191)
T d1luaa1 87 AEAVKGAHFVFTAGAI 102 (191)
T ss_dssp HHHTTTCSEEEECCCT
T ss_pred HHHhcCcCeeeecCcc
Confidence 112568999988543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=90.46 E-value=1.7 Score=33.80 Aligned_cols=115 Identities=18% Similarity=0.079 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=.|++ +.++..+++.+.+. +++|+.++.+.+.++...+ ..+ .++.++++|+.+.. +
T Consensus 4 ~gK~alItGas-~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~Dls~~~~i~~~~~~i~~ 75 (241)
T d2a4ka1 4 SGKTILVTGAA-SGIGRAALDLFARE--GASLVAVDREERLLAEAVA---ALE--AEAIAVVADVSDPKAVEAVFAEALE 75 (241)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH---TCC--SSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH---HcC--CceEEEEecCCCHHHHHHHHHHHHH
Confidence 35677777765 66888888888776 4799999999987654433 223 45888999997632 0
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHH-------HHHHHHHHHHHcccCCcEEEEEc
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAA-------ERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.-++.|++|.|.......+-.......... .+..+.+.+...++.++.++++.
T Consensus 76 ~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~s 135 (241)
T d2a4ka1 76 EFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTG 135 (241)
T ss_dssp HHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred HhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecc
Confidence 126799999986654433211111111000 11124555567778877776644
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.30 E-value=0.85 Score=36.11 Aligned_cols=80 Identities=21% Similarity=0.164 Sum_probs=58.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~----- 184 (293)
++.+|=-| |++.++..+++.+.+.| ++|+.+|.+++.++.+.+.....+.. .++.++.+|+.+.. +
T Consensus 5 gKvalVTG-as~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 5 EKVAIITG-SSNGIGRATAVLFAREG--AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeC-cCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 44555555 55678888999888764 69999999999998888777666533 46899999997632 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|...
T Consensus 82 ~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 82 KFGKLDILVNNAGA 95 (264)
T ss_dssp HHSCCCEEEECCC-
T ss_pred HhCCCCEeeccccc
Confidence 12679999988554
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=89.98 E-value=1.4 Score=34.27 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=55.4
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCC-----cEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSL-----GRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F---- 184 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~-----~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 184 (293)
||=-|++ +.++..+++.+.+.|.. ..++.++.+++.++...+..+..+ .++.++.+|+.+.. +
T Consensus 4 vlITGas-~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (240)
T d2bd0a1 4 LLITGAG-KGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHIV 80 (240)
T ss_dssp EEEETTT-SHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEccCC-CHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 4445654 55888888888766431 248999999999988887777665 45888999998632 0
Q ss_pred -CCCcccEEEecchhh
Q 022698 185 -GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 -~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 81 ~~~g~iDilvnnAg~~ 96 (240)
T d2bd0a1 81 ERYGHIDCLVNNAGVG 96 (240)
T ss_dssp HHTSCCSEEEECCCCC
T ss_pred HHcCCcceeecccccc
Confidence 126799999886543
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=89.83 E-value=2.7 Score=32.66 Aligned_cols=74 Identities=19% Similarity=0.138 Sum_probs=52.6
Q ss_pred EcCCCChHHHHHHHHhhhcCCCcEEEEEeC-CHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----CCCccc
Q 022698 122 IGCGRGILLNAVATQFKKTGSLGRVVGLDC-KKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----GDNYFD 190 (293)
Q Consensus 122 iG~G~G~~~~~l~~~~~~~~~~~~v~~vDi-s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~~fD 190 (293)
|=.|++.++..+++.+.+.| ++|+..|. +++.++...+..+..+ .++.++.+|+.+.. + .-++.|
T Consensus 6 ITGas~GIG~a~a~~la~~G--a~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 81 (244)
T d1edoa_ 6 VTGASRGIGKAIALSLGKAG--CKVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWGTID 81 (244)
T ss_dssp ETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred EeCCCcHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 33456679999999988764 68888765 6677777777666665 45888999997632 0 126799
Q ss_pred EEEecchhh
Q 022698 191 VVVSAAFFH 199 (293)
Q Consensus 191 ~Iv~~~~~~ 199 (293)
++|.|....
T Consensus 82 iLVnnAg~~ 90 (244)
T d1edoa_ 82 VVVNNAGIT 90 (244)
T ss_dssp EEEECCCCC
T ss_pred ccccccccc
Confidence 999886543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=89.68 E-value=1.4 Score=32.16 Aligned_cols=122 Identities=12% Similarity=0.060 Sum_probs=66.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC---CCCCCCCcccEEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR---SLPFGDNYFDVVV 193 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~fD~Iv 193 (293)
++|-=||+ |..+..++..+.+.| .+|+.+|.++..++..++.-......+.......... +....-...|+|+
T Consensus 2 k~iaIiGa--G~~G~~~A~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGL--GNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVIL 77 (184)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred CEEEEECc--cHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence 35666776 556666777776654 6999999999877666544211000000111111100 0000014579988
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc--hHHHHHHHHcCCcceE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV--PEYVRRLQELKMEDIR 257 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~l~~~gf~~~~ 257 (293)
..-+-. ....+++++...|+++-.+++..-... ......+...+-..+.
T Consensus 78 i~v~~~---------------~~~~~~~~i~~~l~~~~~iv~~~g~~~~~~~~~~~~~~~~~~~~~ 128 (184)
T d1bg6a2 78 IVVPAI---------------HHASIAANIASYISEGQLIILNPGATGGALEFRKILRENGAPEVT 128 (184)
T ss_dssp ECSCGG---------------GHHHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHHHTTCCCCE
T ss_pred EEEchh---------------HHHHHHHHhhhccCCCCEEEEeCCCCccHHHHHHHHHHhcCCCce
Confidence 753322 345788889999999987765432222 3455666666544433
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=89.64 E-value=0.059 Score=40.35 Aligned_cols=93 Identities=19% Similarity=0.118 Sum_probs=54.9
Q ss_pred CCCCCCeEEEEcCC-C-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---CCC
Q 022698 112 DWSTVKTALDIGCG-R-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---FGD 186 (293)
Q Consensus 112 ~~~~~~~vLDiG~G-~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~ 186 (293)
+..++.+||=.|++ . |..+..+++.. +++|++++.+++.++.+++ .|... ++ |..+.. ...
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~-----G~~vi~~~~~~~~~~~~~~----lGa~~---~i--~~~~~~~~~~~~ 89 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAM-----GLRVLAAASRPEKLALPLA----LGAEE---AA--TYAEVPERAKAW 89 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHT-----TCEEEEEESSGGGSHHHHH----TTCSE---EE--EGGGHHHHHHHT
T ss_pred CCCCCCEEEEEeccccchhhhhhhhccc-----ccccccccccccccccccc----cccce---ee--ehhhhhhhhhcc
Confidence 46788899988742 2 44444455443 4699999999886665553 44321 11 222211 123
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
..+|+|+-... + .+....+.|+|+|+++.+..
T Consensus 90 ~g~D~v~d~~G----~----------------~~~~~~~~l~~~G~~v~~G~ 121 (171)
T d1iz0a2 90 GGLDLVLEVRG----K----------------EVEESLGLLAHGGRLVYIGA 121 (171)
T ss_dssp TSEEEEEECSC----T----------------THHHHHTTEEEEEEEEEC--
T ss_pred ccccccccccc----h----------------hHHHHHHHHhcCCcEEEEeC
Confidence 45999885311 1 13456789999999988653
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=89.20 E-value=0.83 Score=31.77 Aligned_cols=104 Identities=12% Similarity=0.016 Sum_probs=66.8
Q ss_pred CCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEEEecchhh
Q 022698 124 CGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVVVSAAFFH 199 (293)
Q Consensus 124 ~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~Iv~~~~~~ 199 (293)
||.|..+..+++.+. +..++.+|.++...+.++ ..+ +.++.+|..+.. ..-.+.+.+++...=
T Consensus 6 ~G~g~~g~~l~~~L~----~~~i~vi~~d~~~~~~~~----~~~----~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~- 72 (129)
T d2fy8a1 6 CGWSESTLECLRELR----GSEVFVLAEDENVRKKVL----RSG----ANFVHGDPTRVSDLEKANVRGARAVIVNLES- 72 (129)
T ss_dssp ESCCHHHHHHHHTSC----GGGEEEEESCTTHHHHHH----HTT----CEEEESCTTSHHHHHHTTCTTCSEEEECCSS-
T ss_pred ECCCHHHHHHHHHHc----CCCCEEEEcchHHHHHHH----hcC----ccccccccCCHHHHHHhhhhcCcEEEEeccc-
Confidence 567889999999885 347889999999766543 223 678889987632 123467888875321
Q ss_pred hhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 200 TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
+.....+-...+.+.|...++..- ..++..+.++..|-..+
T Consensus 73 --------------d~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~~G~d~v 113 (129)
T d2fy8a1 73 --------------DSETIHCILGIRKIDESVRIIAEA--ERYENIEQLRMAGADQV 113 (129)
T ss_dssp --------------HHHHHHHHHHHHHHCSSSCEEEEC--SSGGGHHHHHHHHCSEE
T ss_pred --------------hhhhHHHHHHHHHHCCCceEEEEE--cCHHHHHHHHHCCCCEE
Confidence 122233444556788887665532 35667777888886543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.19 E-value=1.3 Score=35.07 Aligned_cols=80 Identities=21% Similarity=0.125 Sum_probs=60.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=-| |++.++..+++.+.+.| ++|+.+|.+++.++.+.+.+...+.. .++.++.+|+.+.. +
T Consensus 5 gK~alVTG-as~GIG~aia~~la~~G--a~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 5 NKTVIITG-SSNGIGRTTAILFAQEG--ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeC-cCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 55677666 45678888988888764 69999999999999888887766533 46899999997632 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|...
T Consensus 82 ~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 82 QFGKIDVLVNNAGA 95 (272)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HhCCceEEEeCCcc
Confidence 12679999988544
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=88.90 E-value=1.4 Score=34.31 Aligned_cols=79 Identities=15% Similarity=-0.010 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCC-hHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------
Q 022698 115 TVKTALDIGCGRG-ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---------- 183 (293)
Q Consensus 115 ~~~~vLDiG~G~G-~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---------- 183 (293)
.++++|=-|+++| .++..+++.+.+. +++|+.++.+++..+.+.+.....+. ......|..+..
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQLGS---DIVLQCDVAEDASIDTMFAELG 78 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSTTTHHHHHHHHHHTTC---CCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHhhcCC---cceeecccchHHHHHHHHHHhh
Confidence 3678888887764 5666666666655 47999999998877777766665542 445556654321
Q ss_pred CCCCcccEEEecchh
Q 022698 184 FGDNYFDVVVSAAFF 198 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~ 198 (293)
...++.|.++.+..+
T Consensus 79 ~~~~~~d~~v~~a~~ 93 (258)
T d1qsga_ 79 KVWPKFDGFVHSIGF 93 (258)
T ss_dssp TTCSSEEEEEECCCC
T ss_pred hcccccceEEEeecc
Confidence 124678999987544
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=88.81 E-value=1.4 Score=34.37 Aligned_cols=73 Identities=23% Similarity=0.145 Sum_probs=52.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=-|+++ .++..+++.+.+.| ++|+.+|.+++.++.+.+.. +..++.+|+.+.. + .
T Consensus 5 gK~~lITGas~-GIG~aia~~l~~~G--~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~ 74 (242)
T d1ulsa_ 5 DKAVLITGAAH-GIGRATLELFAKEG--ARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALAH 74 (242)
T ss_dssp TCEEEEESTTS-HHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHHh
Confidence 56777777655 58888998888764 69999999998776654432 2567889987632 0 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|...
T Consensus 75 ~g~iDilVnnAG~ 87 (242)
T d1ulsa_ 75 LGRLDGVVHYAGI 87 (242)
T ss_dssp HSSCCEEEECCCC
T ss_pred cCCceEEEECCcc
Confidence 2579999988654
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=88.78 E-value=0.086 Score=42.45 Aligned_cols=117 Identities=14% Similarity=0.164 Sum_probs=81.2
Q ss_pred EEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-----CCCCCCcccEEEe
Q 022698 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-----LPFGDNYFDVVVS 194 (293)
Q Consensus 120 LDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~fD~Iv~ 194 (293)
+..-+||-.++..+++. .-++..+|+.++-.+..++++.. ..++.+...|..+ +| +..+--+|+.
T Consensus 87 l~~YPGSP~ia~~llR~------~Drl~l~ELHp~e~~~L~~~~~~---~~~~~v~~~DG~~~l~allP-P~~rRgLVLI 156 (271)
T d2oo3a1 87 LSYYPGSPYFAINQLRS------QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLP-PPEKRGLIFI 156 (271)
T ss_dssp CCEEECHHHHHHHHSCT------TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCS-CTTSCEEEEE
T ss_pred cCcCCCCHHHHHHhCCC------CCceEEeecCHHHHHHHHHHhcc---CCCceEEcCchHHHHHhhCC-CCCCceEEEe
Confidence 35788888887666554 34999999999988877776543 3569999999764 23 2345579999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHccc--CCcEEEEEcCCC----chHHHHHHHHcCCcceEE
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLK--PGGVGVVWDLLH----VPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~----~~~~~~~l~~~gf~~~~~ 258 (293)
.|||+.-. +..++.+.+...++ |.|.++++-... ...+.+.|++.|.+.+++
T Consensus 157 DPpYE~k~------------ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~~~~~k~l~~ 214 (271)
T d2oo3a1 157 DPSYERKE------------EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSVRI 214 (271)
T ss_dssp CCCCCSTT------------HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSSEEEE
T ss_pred cCCcCCHH------------HHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHHhcCccceeE
Confidence 99998765 66666666666655 678887754432 335666667778765544
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=88.49 E-value=2.2 Score=33.22 Aligned_cols=73 Identities=22% Similarity=0.155 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=-| |++.++..+++.+.+.| ++|..+|.+++..+.++.. + ..++.+|+.+.. +
T Consensus 4 ~GK~alITG-as~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~----~----~~~~~~Dv~~~~~v~~~~~~~~~ 72 (248)
T d2d1ya1 4 AGKGVLVTG-GARGIGRAIAQAFAREG--ALVALCDLRPEGKEVAEAI----G----GAFFQVDLEDERERVRFVEEAAY 72 (248)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTT--CEEEEEESSTTHHHHHHHH----T----CEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHc----C----CeEEEEeCCCHHHHHHHHHHHHH
Confidence 356777777 55678889999888774 6999999998866544322 2 457788987632 1
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|...
T Consensus 73 ~~G~iDiLVnnAG~ 86 (248)
T d2d1ya1 73 ALGRVDVLVNNAAI 86 (248)
T ss_dssp HHSCCCEEEECCCC
T ss_pred hcCCCCeEEEeCcC
Confidence 12679999988654
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=87.65 E-value=2.4 Score=31.27 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC--CCCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL--PFGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~I 192 (293)
++.+||=.| |+|..+....+..... +++|+++.-+++..+.+++. |. ..++..+-.+. ......+|.|
T Consensus 31 ~~~~vlV~g-asGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~l----Ga---d~vi~~~~~~~~~~l~~~~~~~v 100 (177)
T d1o89a2 31 QDGEIVVTG-ASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKSL----GA---SRVLPRDEFAESRPLEKQVWAGA 100 (177)
T ss_dssp GGCEEEESS-TTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHH----TE---EEEEEGGGSSSCCSSCCCCEEEE
T ss_pred CCCcEEEEE-ccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHhh----cc---ccccccccHHHHHHHHhhcCCee
Confidence 445777555 5555555444433333 47999999999876666543 32 22333222211 1334567887
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+-+ +. ...+.+..+.|+++|+++.+..
T Consensus 101 vD~-----Vg--------------g~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 101 IDT-----VG--------------DKVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp EES-----SC--------------HHHHHHHHHTEEEEEEEEECCC
T ss_pred EEE-----cc--------------hHHHHHHHHHhccccceEeecc
Confidence 632 12 2356788889999999998754
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.56 E-value=2 Score=33.37 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-CCCc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-GDNY 188 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~ 188 (293)
.++++|=-|++ +.++..+++.+.+.| ++|+.+|.+++.++...+.. ..+..+.+|+.+.. + .-++
T Consensus 4 ~GK~alITGas-~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~ 74 (242)
T d1cyda_ 4 SGLRALVTGAG-KGIGRDTVKALHASG--AKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGP 74 (242)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 35678877755 558888888887764 69999999988766554432 23678889987632 1 1267
Q ss_pred ccEEEecchhh
Q 022698 189 FDVVVSAAFFH 199 (293)
Q Consensus 189 fD~Iv~~~~~~ 199 (293)
.|++|.|....
T Consensus 75 iDilVnnAg~~ 85 (242)
T d1cyda_ 75 VDLLVNNAALV 85 (242)
T ss_dssp CSEEEECCCCC
T ss_pred CeEEEECCccc
Confidence 99999886543
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=87.46 E-value=1.3 Score=32.63 Aligned_cols=113 Identities=8% Similarity=-0.013 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccc
Q 022698 125 GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKE 204 (293)
Q Consensus 125 G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~ 204 (293)
|.|..+..++..+.+.| .+|++.|.+++.++...++..... ...-.....++.......|.++...+-.
T Consensus 9 GlG~MG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~ii~~~~~~----- 77 (176)
T d2pgda2 9 GLAVMGQNLILNMNDHG--FVVCAFNRTVSKVDDFLANEAKGT----KVLGAHSLEEMVSKLKKPRRIILLVKAG----- 77 (176)
T ss_dssp CCSHHHHHHHHHHHHTT--CCEEEECSSTHHHHHHHHTTTTTS----SCEECSSHHHHHHHBCSSCEEEECSCTT-----
T ss_pred eEhHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHhccccc----cccchhhhhhhhhhhcccceEEEecCch-----
Confidence 44778888888887764 599999999997776655422111 1111111111110112356666542211
Q ss_pred cCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCch---HHHHHHHHcCCcceE
Q 022698 205 YGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP---EYVRRLQELKMEDIR 257 (293)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~l~~~gf~~~~ 257 (293)
+.....+..+...+++|-.++-..-...+ +..+.+.+.|...+.
T Consensus 78 ---------~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ld 124 (176)
T d2pgda2 78 ---------QAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVG 124 (176)
T ss_dssp ---------HHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ---------HHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceec
Confidence 14455677888899988766654433333 344555666665543
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=87.30 E-value=3.7 Score=29.17 Aligned_cols=133 Identities=14% Similarity=0.001 Sum_probs=62.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHH-HHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTL-STLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~-~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
..+|-=||+ |..+..++..+...+-..+++.+|++++..+ .+..............+...|..++ ..-|+|+.
T Consensus 5 ~~KI~IIGa--G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~----~~adivvi 78 (146)
T d1ez4a1 5 HQKVVLVGD--GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDC----KDADLVVI 78 (146)
T ss_dssp BCEEEEECC--SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGG----TTCSEEEE
T ss_pred CCEEEEECC--CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHHh----ccccEEEE
Confidence 457878886 5566666555544433459999999987543 2222211111112245556665543 23688887
Q ss_pred cchhhhhccccCcchhhh-HHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcc
Q 022698 195 AAFFHTVGKEYGHRTVEA-AAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMED 255 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~ 255 (293)
.......+.....+.... ..-..+..+++.+ -.|+++++++...-.--.....+..||..
T Consensus 79 tag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~-~~p~aivivvtNPvdv~t~~~~k~sg~p~ 139 (146)
T d1ez4a1 79 TAGAPQKPGESRLDLVNKNLNILSSIVKPVVD-SGFDGIFLVAANPVDILTYATWKFSGFPK 139 (146)
T ss_dssp CCCC----------CHHHHHHHHHHHHHHHHH-TTCCSEEEECSSSHHHHHHHHHHHHCCCG
T ss_pred ecccccCCCCCHHHHHHHHHHHHHHHHHHHhh-cCCCcEEEEeCCccHHHHHHHHHHHCcCc
Confidence 543322221111111111 1112233444443 46899887755322111223334456643
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=87.23 E-value=6.1 Score=31.62 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=70.3
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC--CCceEEEEcCCCCC-C-------CCC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV--QEYVTAREGDVRSL-P-------FGD 186 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~--~~~v~~~~~d~~~~-~-------~~~ 186 (293)
..|+.+|||--.-...+ + .+++.+++=+|. |++++.-++.+...+. ..+..++..|+.+. . +..
T Consensus 91 ~qvV~LGaGlDTr~~Rl----~-~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~ 164 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRL----D-WPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDP 164 (297)
T ss_dssp CEEEEETCTTCCHHHHS----C-CCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCT
T ss_pred CeEEEeCcccCChhhhc----C-CCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCC
Confidence 45777999987765333 2 122467888885 7777777777766543 24567888887652 1 122
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
...-++++-.++.+++ .++...+++.+.+...||+.+++
T Consensus 165 ~~ptl~i~EGvl~YL~----------~~~~~~ll~~i~~~~~~GS~l~~ 203 (297)
T d2uyoa1 165 SARTAWLAEGLLMYLP----------ATAQDGLFTEIGGLSAVGSRIAV 203 (297)
T ss_dssp TSCEEEEECSCGGGSC----------HHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCCEEEEEccccccCC----------HHHHHHHHHHHHHhCCCCCEEEE
Confidence 3345666666777776 44788999999999999999887
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=87.15 E-value=0.27 Score=36.46 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCC--CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC-C-C-CCCCCc
Q 022698 114 STVKTALDIGCG--RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR-S-L-PFGDNY 188 (293)
Q Consensus 114 ~~~~~vLDiG~G--~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~-~-~-~~~~~~ 188 (293)
.++.+||=-|++ -|..+..+++.+ +++|+++.-|++..+.+++. |... + +...|.. + . ....+.
T Consensus 22 ~~~~~VLV~gaaGgVG~~avQlAk~~-----Ga~Viat~~s~~k~~~~~~l----Gad~-v-i~~~~~~~~~~~~~~~~g 90 (167)
T d1tt7a2 22 PEKGSVLVTGATGGVGGIAVSMLNKR-----GYDVVASTGNREAADYLKQL----GASE-V-ISREDVYDGTLKALSKQQ 90 (167)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHH-----TCCEEEEESSSSTHHHHHHH----TCSE-E-EEHHHHCSSCCCSSCCCC
T ss_pred CCCCEEEEeCCcchHHHHHHHHHHHc-----CCceEEEecCHHHHHHHHhh----cccc-e-EeccchhchhhhcccCCC
Confidence 345568866532 245555555554 47999999998866666544 4321 2 1112211 1 1 122456
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
+|+|+-+-. ...+.+..+.|+|+|+++++....
T Consensus 91 vd~vid~vg-------------------g~~~~~~~~~l~~~G~iv~~G~~~ 123 (167)
T d1tt7a2 91 WQGAVDPVG-------------------GKQLASLLSKIQYGGSVAVSGLTG 123 (167)
T ss_dssp EEEEEESCC-------------------THHHHHHHTTEEEEEEEEECCCSS
T ss_pred ceEEEecCc-------------------HHHHHHHHHHhccCceEEEeeccC
Confidence 999885411 245677888999999999876543
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=86.98 E-value=0.96 Score=36.26 Aligned_cols=80 Identities=23% Similarity=0.120 Sum_probs=57.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEEcCCCCCC----------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-EGVQEYVTAREGDVRSLP---------- 183 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~-~~~~~~v~~~~~d~~~~~---------- 183 (293)
.++++|=-|++ |.++.++++.+.+.| ++|+.+|.++..++.+.+.... .+ .++.++.+|+.+..
T Consensus 24 ~gK~alITGas-~GIG~aiA~~la~~G--a~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~ 98 (294)
T d1w6ua_ 24 QGKVAFITGGG-TGLGKGMTTLLSSLG--AQCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELI 98 (294)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhh
Confidence 35677777765 568888888887764 6999999999888766655433 33 44788899987632
Q ss_pred CCCCcccEEEecchhh
Q 022698 184 FGDNYFDVVVSAAFFH 199 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~ 199 (293)
...+..|+++.|....
T Consensus 99 ~~~g~iDilvnnAg~~ 114 (294)
T d1w6ua_ 99 KVAGHPNIVINNAAGN 114 (294)
T ss_dssp HHTCSCSEEEECCCCC
T ss_pred hhccccchhhhhhhhc
Confidence 1136799999886543
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=86.91 E-value=2.3 Score=33.26 Aligned_cols=79 Identities=16% Similarity=0.062 Sum_probs=54.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC-HHHHHHHHHHHHh-cCCCCceEEEEcCCCCCC-----C----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK-KRTTLSTLRTAKM-EGVQEYVTAREGDVRSLP-----F---- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis-~~~l~~a~~~~~~-~~~~~~v~~~~~d~~~~~-----~---- 184 (293)
++++|=-| |++.++..+++.+.+.| ++|+.+|.+ ++.++.+.+.... .+ .++.++.+|+.+.. +
T Consensus 4 gK~alITG-as~GIG~aiA~~la~~G--a~V~~~~r~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (260)
T d1x1ta1 4 GKVAVVTG-STSGIGLGIATALAAQG--ADIVLNGFGDAAEIEKVRAGLAAQHG--VKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTT--CEEEEECCSCHHHHHHHHHHHHHHHT--SCEEEECCCTTSHHHHHHHHHHHH
T ss_pred cCEEEEeC-CCCHHHHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence 45666444 55678888988888764 699999987 4556655555433 33 34889999998632 1
Q ss_pred -CCCcccEEEecchhh
Q 022698 185 -GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 -~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 79 ~~~G~iDiLVnnAG~~ 94 (260)
T d1x1ta1 79 RQMGRIDILVNNAGIQ 94 (260)
T ss_dssp HHHSCCSEEEECCCCC
T ss_pred HHhCCCcEEEeecccc
Confidence 126799999886543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=86.42 E-value=5.7 Score=30.96 Aligned_cols=79 Identities=24% Similarity=0.164 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCH-HHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKK-RTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=-|+ ++.++..+++.+.+.| ++|+.++.+. +.++...+..+..+ .++.++.+|+.+.. +
T Consensus 7 gK~alITGa-s~GIG~aia~~la~~G--~~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (261)
T d1geea_ 7 GKVVVITGS-STGLGKSMAIRFATEK--AKVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp TCEEEETTC-SSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 456665565 4568888988888764 6999999874 45666666666655 35888999997632 1
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 82 ~~G~iDiLVnnAG~~ 96 (261)
T d1geea_ 82 EFGKLDVMINNAGLE 96 (261)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HhCCCCEeeccceec
Confidence 125799999886543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=85.75 E-value=1.5 Score=34.48 Aligned_cols=80 Identities=15% Similarity=0.027 Sum_probs=57.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH-HhcCCCCceEEEEcCCCCCC-----C----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA-KMEGVQEYVTAREGDVRSLP-----F---- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~-~~~~~~~~v~~~~~d~~~~~-----~---- 184 (293)
.++++|=-| |++.++..+++.+.+. +++|+.+|.+++.++.+.+.. +..+ .++.++.+|+.+.. +
T Consensus 8 ~gK~alITG-as~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 8 VNKTIIVTG-GNRGIGLAFTRAVAAA--GANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp TTEEEEEET-TTSHHHHHHHHHHHHT--TEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHH
Confidence 356777777 5667888898888876 479999999987776555444 3334 34888999997632 0
Q ss_pred -CCCcccEEEecchhh
Q 022698 185 -GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 -~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 83 ~~~g~iDilVnnAg~~ 98 (260)
T d1h5qa_ 83 ADLGPISGLIANAGVS 98 (260)
T ss_dssp HHSCSEEEEEECCCCC
T ss_pred HHhCCCcEeccccccc
Confidence 136899999886543
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.51 E-value=1.4 Score=30.89 Aligned_cols=99 Identities=12% Similarity=0.022 Sum_probs=59.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHH
Q 022698 143 LGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLG 221 (293)
Q Consensus 143 ~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 221 (293)
+.+|..+|-++......++.++..|.. +. ...|..+ +..-...||+|++..-+-.. +-.++++
T Consensus 7 g~rILvVDD~~~~~~~l~~~L~~~G~~--v~-~a~~g~eal~~l~~~~dlillD~~mP~~-------------dG~el~~ 70 (134)
T d1dcfa_ 7 GLKVLVMDENGVSRMVTKGLLVHLGCE--VT-TVSSNEECLRVVSHEHKVVFMDVCMPGV-------------ENYQIAL 70 (134)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHCCTTCSEEEEECCSSTT-------------TTTHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHhhcCCCeEEEEeccCCC-------------chHHHHH
Confidence 469999999999999888888888753 33 3344332 11224579999986433222 2234555
Q ss_pred HHHHcccCC----cEEEEEcCCCchHHHHHHHHcCCcceE
Q 022698 222 EMVRVLKPG----GVGVVWDLLHVPEYVRRLQELKMEDIR 257 (293)
Q Consensus 222 ~~~~~Lkpg----G~l~~~~~~~~~~~~~~l~~~gf~~~~ 257 (293)
++++..... =.++++.....++..+...++|+..+-
T Consensus 71 ~ir~~~~~~~~~~~~ii~lT~~~~~~~~~~~~~~G~~~~l 110 (134)
T d1dcfa_ 71 RIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVL 110 (134)
T ss_dssp HHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEE
T ss_pred HHHHhcccccCCCCeEEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 555432221 234445555566677777789987553
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=85.45 E-value=1.5 Score=32.25 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=62.2
Q ss_pred CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CCCCcccEEEecchhhhhcc
Q 022698 125 GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FGDNYFDVVVSAAFFHTVGK 203 (293)
Q Consensus 125 G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Iv~~~~~~~~~~ 203 (293)
|.|..+..+++.+.+.| .+|++.|.+++..+...+............. ..+...+. .....-+++++..+-.
T Consensus 8 GlG~MG~~ma~~L~~~G--~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---- 80 (178)
T d1pgja2 8 GLGVMGANLALNIAEKG--FKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAASLKKPRKALILVQAGA---- 80 (178)
T ss_dssp CCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHHHBCSSCEEEECCCCSH----
T ss_pred eehHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHcCCccccccchhh-hhhhhHHHHhcccceEEEEeecCcc----
Confidence 56778888888887664 5899999999977766655332222121221 11111110 0011112222222211
Q ss_pred ccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCch---HHHHHHHHcCCcceE
Q 022698 204 EYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP---EYVRRLQELKMEDIR 257 (293)
Q Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~l~~~gf~~~~ 257 (293)
.....+..+...+++|..++-......+ +..+.+.+.|+..+.
T Consensus 81 -----------~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ld 126 (178)
T d1pgja2 81 -----------ATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLG 126 (178)
T ss_dssp -----------HHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred -----------hhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEec
Confidence 3345667888889998877664444433 345555566665443
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=85.27 E-value=3.9 Score=31.70 Aligned_cols=77 Identities=21% Similarity=0.113 Sum_probs=52.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++.+|=-| |++.++..+++.+.+.| ++|+.+|.++.. .+.+..+..+ .++.++.+|+.+.. + .
T Consensus 5 gKvalVTG-as~GIG~aia~~la~~G--a~V~~~~~~~~~--~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~ 77 (247)
T d2ew8a1 5 DKLAVITG-GANGIGRAIAERFAVEG--ADIAIADLVPAP--EAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVIST 77 (247)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHTT--CEEEEEESSCCH--HHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHCC--CEEEEEECCchH--HHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 55677666 55678888988887764 699999987642 2333344444 45889999997632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 78 ~G~iDilVnnAG~~ 91 (247)
T d2ew8a1 78 FGRCDILVNNAGIY 91 (247)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 26799999886553
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.80 E-value=3.8 Score=32.80 Aligned_cols=82 Identities=15% Similarity=0.044 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc---CCCCceEEEEcCCCCCC-----C--
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME---GVQEYVTAREGDVRSLP-----F-- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~---~~~~~v~~~~~d~~~~~-----~-- 184 (293)
.++++|=-|+ ++.++..+++.+.+.| ++|+.+|.+++.++.+.+.+... ....++.++.+|+.+.. +
T Consensus 11 ~gKvalITGa-s~GIG~aia~~la~~G--a~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 11 QGQVAIVTGG-ATGIGKAIVKELLELG--SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 4567777775 5568888888887764 69999999999888776655432 11246889999998632 0
Q ss_pred ---CCCcccEEEecchhh
Q 022698 185 ---GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ---~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 88 ~~~~~G~iDiLVnnAg~~ 105 (297)
T d1yxma1 88 TLDTFGKINFLVNNGGGQ 105 (297)
T ss_dssp HHHHHSCCCEEEECCCCC
T ss_pred HHHHhCCeEEEEeecccc
Confidence 126799999886543
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=82.93 E-value=2.3 Score=32.68 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=27.3
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHH
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR 154 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~ 154 (293)
.+||=.|+ +|.++..+++.+.+. +++|+.+|.++.
T Consensus 3 gkVlITGa-s~GIG~aia~~l~~~--G~~V~~~~~~~~ 37 (235)
T d1ooea_ 3 GKVIVYGG-KGALGSAILEFFKKN--GYTVLNIDLSAN 37 (235)
T ss_dssp EEEEEETT-TSHHHHHHHHHHHHT--TEEEEEEESSCC
T ss_pred CEEEEECC-CCHHHHHHHHHHHHC--CCEEEEEECCch
Confidence 46875554 567899999998876 479999998764
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=82.71 E-value=7.3 Score=29.95 Aligned_cols=82 Identities=20% Similarity=0.180 Sum_probs=52.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC---HHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK---KRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------ 183 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis---~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 183 (293)
++|+.++|=.| |+|.++..+++.+.+.|. ..++.+-.+ .+..+...+.++..+ .++.++.+|+.+..
T Consensus 6 ~~p~gt~lVTG-gs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~g--~~v~~~~~Dv~d~~~~~~~~ 81 (259)
T d2fr1a1 6 WKPTGTVLVTG-GTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELL 81 (259)
T ss_dssp CCCCSEEEEET-TTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHH
T ss_pred cCCcCEEEEEC-CCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhcc--ccccccccccchHHHHHHhh
Confidence 56788999888 678899999998877652 246655433 223333333344444 35899999987521
Q ss_pred ---CCCCcccEEEecchh
Q 022698 184 ---FGDNYFDVVVSAAFF 198 (293)
Q Consensus 184 ---~~~~~fD~Iv~~~~~ 198 (293)
......|.|+.+...
T Consensus 82 ~~i~~~~~i~~vv~~ag~ 99 (259)
T d2fr1a1 82 GGIGDDVPLSAVFHAAAT 99 (259)
T ss_dssp HTSCTTSCEEEEEECCCC
T ss_pred cccccccccccccccccc
Confidence 123457888876554
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=82.69 E-value=0.45 Score=39.05 Aligned_cols=72 Identities=26% Similarity=0.271 Sum_probs=47.6
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC----HHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CCCCc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK----KRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FGDNY 188 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis----~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~ 188 (293)
+||=.| |+|.++..+++.+-+.| .+|+++|.. ...+...... . .+++.++++|+.+.. +.+.+
T Consensus 2 KiLItG-~tGfIG~~l~~~L~~~g--~~V~~~d~~~~~~~~~~~~~~~~-~----~~~~~~~~~Dl~d~~~l~~~~~~~~ 73 (338)
T d1udca_ 2 RVLVTG-GSGYIGSHTCVQLLQNG--HDVIILDNLCNSKRSVLPVIERL-G----GKHPTFVEGDIRNEALMTEILHDHA 73 (338)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTT--CEEEEEECCSSCCTTHHHHHHHH-H----TSCCEEEECCTTCHHHHHHHHHHTT
T ss_pred EEEEEC-CCCHHHHHHHHHHHHCc--CEEEEEECCCCcchhhHHHHHhh-c----CCCCEEEEeecCCHHHHHHHHhccC
Confidence 566665 79999999999987764 599999852 2222222111 1 135899999998743 23346
Q ss_pred ccEEEecch
Q 022698 189 FDVVVSAAF 197 (293)
Q Consensus 189 fD~Iv~~~~ 197 (293)
+|+|+-...
T Consensus 74 ~d~ViHlAa 82 (338)
T d1udca_ 74 IDTVIHFAG 82 (338)
T ss_dssp CSEEEECCS
T ss_pred CCEEEECCC
Confidence 899986543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=82.58 E-value=3.9 Score=31.88 Aligned_cols=80 Identities=20% Similarity=0.105 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=-| |++.++..+++.+.+.| ++|+.+|.+++.++.+.+..+..+ .++.++.+|+.+.. +
T Consensus 10 ~gK~alITG-as~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 10 DGKCAIITG-AGAGIGKEIAITFATAG--ASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHTTT--CEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 355666555 66778999999988764 799999999999988888777665 35888999998632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 85 ~~g~iDilvnnAG~~ 99 (255)
T d1fmca_ 85 KLGKVDILVNNAGGG 99 (255)
T ss_dssp HHSSCCEEEECCCCC
T ss_pred HcCCCCEeeeCCcCC
Confidence 126799999886653
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=82.53 E-value=4.4 Score=31.57 Aligned_cols=81 Identities=14% Similarity=-0.003 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------
Q 022698 115 TVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---------- 183 (293)
Q Consensus 115 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---------- 183 (293)
.++++|=.|+++ -.++.++++.+.+. +++|+.+|.++...+.+++.....+ ...+...|+.+..
T Consensus 4 ~gK~alITGaag~~GIG~AiA~~la~~--Ga~V~i~~r~~~~~~~~~~l~~~~~---~~~~~~~d~~~~~~~~~~~~~~~ 78 (274)
T d2pd4a1 4 KGKKGLIVGVANNKSIAYGIAQSCFNQ--GATLAFTYLNESLEKRVRPIAQELN---SPYVYELDVSKEEHFKSLYNSVK 78 (274)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTT--TCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHhhCC---ceeEeeecccchhhHHHHHHHHH
Confidence 367888888744 36888888888876 4799999999775555555444332 2556777776421
Q ss_pred CCCCcccEEEecchhhh
Q 022698 184 FGDNYFDVVVSAAFFHT 200 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~ 200 (293)
..-++.|++++|.....
T Consensus 79 ~~~g~id~lV~nag~~~ 95 (274)
T d2pd4a1 79 KDLGSLDFIVHSVAFAP 95 (274)
T ss_dssp HHTSCEEEEEECCCCCC
T ss_pred HHcCCCCeEEeeccccc
Confidence 01367999998866543
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.49 E-value=2.8 Score=28.93 Aligned_cols=98 Identities=10% Similarity=0.085 Sum_probs=62.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C------CCCCcccEEEecchhhhhccccCcchhhhHHHH
Q 022698 144 GRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P------FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER 216 (293)
Q Consensus 144 ~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~------~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~ 216 (293)
.+|..+|-++...+..++.++..|.. .+.. ..|..+. . ....+||+|++..-+... +-
T Consensus 2 irVLvVDD~~~~~~~l~~~L~~~g~~-~v~~-a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~-------------dG 66 (128)
T d2r25b1 2 VKILVVEDNHVNQEVIKRMLNLEGIE-NIEL-ACDGQEAFDKVKELTSKGENYNMIFMDVQMPKV-------------DG 66 (128)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCC-CEEE-ESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSS-------------CH
T ss_pred eEEEEEeCCHHHHHHHHHHHHHcCCe-EEEE-EcChHHHHHHHHhhhhccCCCCEEEEEeCCCCC-------------CH
Confidence 47899999999999999888887753 2332 3443321 0 124579999987444333 33
Q ss_pred HHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 217 MRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 217 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
.++++++++...+.-.+++......++......+.|+...
T Consensus 67 ~el~~~ir~~~~~~~piI~lT~~~~~~~~~~~~~~G~~~~ 106 (128)
T d2r25b1 67 LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGF 106 (128)
T ss_dssp HHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHccCCCCeEEEEECCCCHHHHHHHHHcCCCEE
Confidence 4566777655555554555555566777777778898654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=82.40 E-value=1.3 Score=32.30 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=33.8
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHH
Q 022698 111 NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT 162 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~ 162 (293)
...+++.+|+=+|+|.+........... + ..+|+++|.+++.++.+++.
T Consensus 24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~--g-~~~Vi~~~~~~~rl~~a~~~ 72 (175)
T d1cdoa2 24 AKVEPGSTCAVFGLGAVGLAAVMGCHSA--G-AKRIIAVDLNPDKFEKAKVF 72 (175)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHT--T-CSEEEEECSCGGGHHHHHHT
T ss_pred hCCCCCCEEEEEecCCccchHHHHHHHH--h-hchheeecchHHHHHHHHHc
Confidence 3467889999999988555444332221 1 46899999999977766543
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=82.03 E-value=2.1 Score=29.09 Aligned_cols=97 Identities=13% Similarity=0.157 Sum_probs=60.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHH
Q 022698 144 GRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLG 221 (293)
Q Consensus 144 ~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 221 (293)
.+|..+|-++...+..+..++..|.. +.....|..+. . ....+||+|++...+-.. +-.++++
T Consensus 2 krILivDD~~~~~~~l~~~L~~~g~~--v~~~a~~~~~al~~~~~~~~dliilD~~mp~~-------------~G~e~~~ 66 (118)
T d1u0sy_ 2 KRVLIVDDAAFMRMMLKDIITKAGYE--VAGEATNGREAVEKYKELKPDIVTMDITMPEM-------------NGIDAIK 66 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHHHHCCSEEEEECSCGGG-------------CHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCc--eEEEECCHHHHHHHHHhccCCEEEEecCCCCC-------------CHHHHHH
Confidence 48999999999999988888887642 33234454331 1 234569999987433222 3446666
Q ss_pred HHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 222 EMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 222 ~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
++.+. .|.-.++++......+......+.|....
T Consensus 67 ~ir~~-~~~~pvi~ls~~~~~~~~~~a~~~Ga~~y 100 (118)
T d1u0sy_ 67 EIMKI-DPNAKIIVCSAMGQQAMVIEAIKAGAKDF 100 (118)
T ss_dssp HHHHH-CTTCCEEEEECTTCHHHHHHHHHTTCCEE
T ss_pred HHHHh-CCCCcEEEEEccCCHHHHHHHHHcCCCEE
Confidence 66543 45555555555556666666667886643
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.83 E-value=4.4 Score=31.89 Aligned_cols=80 Identities=21% Similarity=0.155 Sum_probs=59.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=-|++ +.++..+++.+.+.| ++|+.+|.+++.++.+.+.....+.. .++.++.+|+.+.. +
T Consensus 4 gK~alITGas-~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 4 GKSVIITGSS-NGIGRSAAVIFAKEG--AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp TCEEEETTCS-SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 5567766654 568888888888764 69999999999999888877766543 46899999997632 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|...
T Consensus 81 ~~G~iDilVnnAG~ 94 (274)
T d1xhla_ 81 KFGKIDILVNNAGA 94 (274)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCceEEEeeccc
Confidence 12578999998654
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=81.79 E-value=1.4 Score=31.78 Aligned_cols=104 Identities=17% Similarity=0.221 Sum_probs=58.0
Q ss_pred CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccc
Q 022698 125 GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKE 204 (293)
Q Consensus 125 G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~ 204 (293)
|.|..+..+++.+.+.| .+|++.|.+++..+.+.+. + ... ..+..+. ....|+|++.-+-.
T Consensus 7 GlG~MG~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~----~----~~~-~~~~~e~---~~~~d~ii~~v~~~----- 67 (161)
T d1vpda2 7 GLGIMGKPMSKNLLKAG--YSLVVSDRNPEAIADVIAA----G----AET-ASTAKAI---AEQCDVIITMLPNS----- 67 (161)
T ss_dssp CCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHT----T----CEE-CSSHHHH---HHHCSEEEECCSSH-----
T ss_pred ehhHHHHHHHHHHHHCC--CeEEEEeCCcchhHHHHHh----h----hhh-cccHHHH---HhCCCeEEEEcCCH-----
Confidence 44667788888776654 5999999999976655432 2 111 2222221 23479888763321
Q ss_pred cCcchhhhHHHHHHHH---HHHHHcccCCcEEEEEcCCCch---HHHHHHHHcCCcce
Q 022698 205 YGHRTVEAAAERMRVL---GEMVRVLKPGGVGVVWDLLHVP---EYVRRLQELKMEDI 256 (293)
Q Consensus 205 ~~~~~~~~~~~~~~~l---~~~~~~LkpgG~l~~~~~~~~~---~~~~~l~~~gf~~~ 256 (293)
+....++ ..+...++||-.++-..-.... +..+.+.+.|...+
T Consensus 68 ---------~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (161)
T d1vpda2 68 ---------PHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEML 116 (161)
T ss_dssp ---------HHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred ---------HHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCcee
Confidence 1333333 3466778887665543333322 34455556665443
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.54 E-value=4.8 Score=31.21 Aligned_cols=64 Identities=8% Similarity=-0.067 Sum_probs=47.6
Q ss_pred eEEEEcCCCChHHHHHHHHhhhc-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 118 TALDIGCGRGILLNAVATQFKKT-GSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~-~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+|.=|-.|++.++..+++.+.+. ..+++|+.++.+++.++.+.+.....+...++.++.+|+.+
T Consensus 7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~ 71 (259)
T d1oaaa_ 7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT 71 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS
T ss_pred CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCC
Confidence 55556556667888888887642 12579999999999998887776655444568999999876
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.51 E-value=4.9 Score=31.21 Aligned_cols=77 Identities=23% Similarity=0.135 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=-|+ ++.++..+++.+.+. +++|+.+|.+++.++.+.+.. + .++.++.+|+.+.. + .
T Consensus 5 gK~alVTGa-s~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~---~--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 5 GKTALITGS-ARGIGRAFAEAYVRE--GARVAIADINLEAARATAAEI---G--PAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp TEEEEEETC-SSHHHHHHHHHHHHT--TEEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh---C--CceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 456777775 567888888888776 479999999998776655443 3 34888999997632 0 1
Q ss_pred CCcccEEEecchhhh
Q 022698 186 DNYFDVVVSAAFFHT 200 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~ 200 (293)
-++.|++|.|.....
T Consensus 77 ~g~iDilVnnAg~~~ 91 (256)
T d1k2wa_ 77 WGSIDILVNNAALFD 91 (256)
T ss_dssp HSCCCEEEECCCCCC
T ss_pred hCCccEEEeeccccc
Confidence 267999999866543
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=81.42 E-value=5.5 Score=28.00 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=34.8
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHH-HHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTL-STLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~-~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
+|-=||+ |..+..++-.+...+-..++..+|++++..+ .+.................+|..++ ..-|+|+...
T Consensus 3 KI~IIGa--G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~----~~adivvita 76 (142)
T d1y6ja1 3 KVAIIGA--GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDV----KDCDVIVVTA 76 (142)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGG----TTCSEEEECC
T ss_pred eEEEECC--CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHh----CCCceEEEec
Confidence 4666786 5555555544443333458999999987432 2222211112222344444443322 2368888754
Q ss_pred h
Q 022698 197 F 197 (293)
Q Consensus 197 ~ 197 (293)
.
T Consensus 77 g 77 (142)
T d1y6ja1 77 G 77 (142)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=80.98 E-value=3.6 Score=28.08 Aligned_cols=96 Identities=15% Similarity=0.019 Sum_probs=62.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHH
Q 022698 144 GRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLG 221 (293)
Q Consensus 144 ~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 221 (293)
.+|..+|-++...+..++.++..|.. +.. ..+..+. . ....+||+|++.--+... +-.++++
T Consensus 4 ~~ILiVDDd~~~~~~l~~~L~~~g~~--v~~-a~~~~~al~~~~~~~~dlvi~D~~mp~~-------------~G~e~~~ 67 (123)
T d1dbwa_ 4 YTVHIVDDEEPVRKSLAFMLTMNGFA--VKM-HQSAEAFLAFAPDVRNGVLVTDLRMPDM-------------SGVELLR 67 (123)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCE--EEE-ESCHHHHHHHGGGCCSEEEEEECCSTTS-------------CHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCE--EEE-ECCHHHHHHHHhhcCCcEEEEeccCccc-------------cchHHHH
Confidence 48999999999999999888888753 432 3333321 1 345679999986443222 3456777
Q ss_pred HHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 222 EMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 222 ~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
++.+ ..|.-.++++......+......+.|....
T Consensus 68 ~lr~-~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~y 101 (123)
T d1dbwa_ 68 NLGD-LKINIPSIVITGHGDVPMAVEAMKAGAVDF 101 (123)
T ss_dssp HHHH-TTCCCCEEEEECTTCHHHHHHHHHTTCSEE
T ss_pred HHHh-cCCCCeEEEEEeeCCHHHHHHHHHCCCCEE
Confidence 7765 456666666555555666666667786543
|