Citrus Sinensis ID: 022699

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MALQRYCFHTCRNASSHKVYMTQSSNDRKESLQDVSARPGKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLTS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHcccccccccccccccccccccccEEEcccccEEEEcccccccHHHHHHHHHHcccccccccccccccccccccccccccccccEEEccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEEEEEccccccEEEEEEEEEEcccccEEEEEEEEEEccEEEEEEEEccccccHHHHHHHHHHHcccEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccEEEccccccEEEcccccEEEEccccccccEEEEEEcccccccccccccccccEEEcccccccccccccEEHccccccccEEEEEEEEccccccccHHHcccHHHHHHHHHHHHHccccccccEEEEEEEccEEccccccEEEEEEEEEEccccccEEEEEEEEEccEEEEEEEcccHHHHHHHHHHHHHHHHccEEEc
Coil and Loop (DISEMBL)
malqrycfhtcrnasshkvymtqssndrkeslqdvsarpgkspaeefAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLlglspesgrnlkldvlypiggysrcidinegfefiypdswvgdqTLLYRAAEKsefersldpppinknvkssngrrqninepivafgppgstgelnvsvivspvppdfsieafggpkeVGEAVVRTItgsgrrpdvkgsliesnlredslRSIKYYELEfrvespsfqrhniavcctrngklytlnaqapesvwpevKSELYTVADSFSLTS
Flexible Loop (DISEMBL)
MALQRYCFhtcrnasshkvymtqssndrkESLQDVSARPGKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKsefersldpppinknvkssngrrqninEPIVAFGPPGSTGELNVSVIVSPVPPDFSIeafggpkeVGEAVVRtitgsgrrpdvkgsliesnlredslRSIKYYELEFrvespsfqrhNIAVCCTRNGKLYTLNAqapesvwpevkSELYTVadsfslts
Low Complexity Region (SEG)
MALQRYCFHTCRNASSHKVYMTQSSNDRKESLQDVSARPGKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLTS
Disordered region (IsUnstruct)
****RYCFHTCR************************************PLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRA*******************************************ELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTIT********************SLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVA*******
Disordered Region (DISOPRED)
********************************************************RLLVGVGTASLVAVGANFGGVTSFLLGL****GRNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFE**LDP**********NGRRQNINEPIVAFGPPGSTGELNVSVIVS*********AFGGPKEVGEAVVRTI********************DSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESV*PEVKSELYTVADSFSLTS
Disordered Region (DISEMBL)
MALQRYCFHTCRNASSHKVY***********************AEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLTS
Disordered Region (DISPRO)
MALQRYCFHTCRNASSHKVYMTQSS**RKESLQDVSARPGKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLTS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALQRYCFHTCRNASSHKVYMTQSSNDRKESLQDVSARPGKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
P82538	230	PsbP-like protein 1, chlo	no	no	0.372	0.473	0.339	2e-11

>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 6/115 (5%)

Query: 179 SVIVSPVPPDF-SIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYY 237
           SV V+ VP    +I+ FG PK++ E +++ +      P+ K +LI+++  E  +    YY
Sbjct: 120 SVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAP---PNQKTTLIDAS--EHDVDGKTYY 174

Query: 238 ELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT 292
           + EF V++ ++ RH +      NG  YTL   A E  W ++K  L+TV DSF +T
Sbjct: 175 QFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSFKIT 229

Required for efficient repair of photodamaged PSII, but not tightly associated with the complex.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
225450829	272	PREDICTED: uncharacterized protein LOC10	0.928	1.0	0.772	1e-120
255542694	268	conserved hypothetical protein [Ricinus	0.914	1.0	0.783	1e-120
224123546	267	predicted protein [Populus trichocarpa]	0.907	0.996	0.788	1e-118
356535075	275	PREDICTED: uncharacterized protein LOC10	0.928	0.989	0.712	1e-115
238479660	280	Photosystem II reaction center PsbP fami	0.839	0.878	0.742	1e-108
449523033	280	PREDICTED: uncharacterized protein LOC10	0.883	0.925	0.723	1e-106
357441699	283	PsbP-like protein [Medicago truncatula]	0.897	0.929	0.703	1e-105
449454159	280	PREDICTED: uncharacterized protein LOC10	0.914	0.957	0.701	1e-105
242055511	279	hypothetical protein SORBIDRAFT_03g04504	0.836	0.878	0.675	1e-90
125573228	283	hypothetical protein OsJ_04669 [Oryza sa	0.853	0.883	0.662	2e-89

>gi|225450829|ref|XP_002279749.1| PREDICTED: uncharacterized protein LOC100244224 [Vitis vinifera] gi|296089674|emb|CBI39493.3| unnamed protein product [Vitis vinifera]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/273 (77%), Positives = 241/273 (88%), Gaps = 1/273 (0%)

Query: 21  MTQSSNDRKESLQDVSARPGKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSF 80
           MTQSS DRK+ LQ+V+  PG+ PAEEF PLA+ F RRLL G+G+ASLVAVGANF G+TS 
Sbjct: 1   MTQSSGDRKDGLQEVTIPPGRPPAEEFGPLASVFRRRLLTGLGSASLVAVGANFAGITSS 60

Query: 81  LLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERS 140
           LLG SPE+GRNLKLDVLYPI GYSRCI+ NEGFEFIYP  WVGDQTLLYRA  K+E ERS
Sbjct: 61  LLGFSPETGRNLKLDVLYPIRGYSRCIETNEGFEFIYPAKWVGDQTLLYRAVGKAELERS 120

Query: 141 LDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEV 200
           LDPP +N   KSS+  R++I+EP+VAFGPPGSTGELNVSVIVSPVP DFSIEAFGGP+EV
Sbjct: 121 LDPPSLNIT-KSSDRHRRSISEPVVAFGPPGSTGELNVSVIVSPVPLDFSIEAFGGPREV 179

Query: 201 GEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRN 260
           GEAVVRTITGSG+RPDVKG+LI S LRED+++++KYYELEFRVESPSF+RHN+AVCCTR 
Sbjct: 180 GEAVVRTITGSGQRPDVKGTLIGSKLREDTIKNVKYYELEFRVESPSFRRHNVAVCCTRG 239

Query: 261 GKLYTLNAQAPESVWPEVKSELYTVADSFSLTS 293
           GKL+TLNAQAPES WPEVK + YT+ADSFSLTS
Sbjct: 240 GKLFTLNAQAPESKWPEVKLDFYTIADSFSLTS 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542694|ref|XP_002512410.1| conserved hypothetical protein [Ricinus communis] gi|223548371|gb|EEF49862.1| conserved hypothetical protein [Ricinus communis]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/273 (78%), Positives = 240/273 (87%), Gaps = 5/273 (1%)

Query: 21  MTQSSNDRKESLQDVSARPGKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSF 80
           MTQSS + K S Q++  RP   PAE+FAPLA+ F RRL VGVG+ASLVAVGANFGG+TS 
Sbjct: 1   MTQSSGENKNSFQEL-PRP---PAEQFAPLASTFRRRLFVGVGSASLVAVGANFGGITSS 56

Query: 81  LLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERS 140
           LLGLSPESGRNLKLDVLYPI GYSRCI  NEGFEFIYP SW GDQTLLYRAAEK EFERS
Sbjct: 57  LLGLSPESGRNLKLDVLYPIQGYSRCIQTNEGFEFIYPASWAGDQTLLYRAAEKKEFERS 116

Query: 141 LDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEV 200
           LDPPP+N N KSS+ RR+NINEP+VAFGPPGS+GELNVSVIVSPVPPDFSIEAFGGP+EV
Sbjct: 117 LDPPPLN-NAKSSDRRRKNINEPVVAFGPPGSSGELNVSVIVSPVPPDFSIEAFGGPEEV 175

Query: 201 GEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRN 260
           GEAVV+TIT SGRRPDVKGSL++S LREDSLR++ YYELEFRVESPSFQRHN+AVCCTR+
Sbjct: 176 GEAVVKTITASGRRPDVKGSLVQSRLREDSLRNVNYYELEFRVESPSFQRHNVAVCCTRD 235

Query: 261 GKLYTLNAQAPESVWPEVKSELYTVADSFSLTS 293
           G+LYTLNAQAPES W +V  +   +A+SF+L S
Sbjct: 236 GRLYTLNAQAPESAWQKVSPDFSRIAESFTLLS 268

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123546|ref|XP_002330148.1| predicted protein [Populus trichocarpa] gi|222871604|gb|EEF08735.1| predicted protein [Populus trichocarpa]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/274 (78%), Positives = 242/274 (88%), Gaps = 8/274 (2%)

Query: 21  MTQSSNDRKESLQDVSARPGKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSF 80
           MTQSS DRKES  +V  RP   PAE+FAPLA+ F RRLLVGVG+ASLVAVGANFGG+TSF
Sbjct: 1   MTQSSGDRKESFPEV-PRP---PAEQFAPLASTFQRRLLVGVGSASLVAVGANFGGITSF 56

Query: 81  LLGLSPESGRNLKLDVLYPIGGYSRCIDINEGF-EFIYPDSWVGDQTLLYRAAEKSEFER 139
           LLGLSPESGRN+KLDVLYPIGGYSRCI  NEGF EFIYP +WVGDQ LLYRAAEK+E+ER
Sbjct: 57  LLGLSPESGRNVKLDVLYPIGGYSRCIGTNEGFAEFIYPATWVGDQRLLYRAAEKTEYER 116

Query: 140 SLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKE 199
           SLDPPP+N N KSS+GRR+N+NEP+VAFGPPGS+GELNVSVIVS VPPDFSIEAFGGPKE
Sbjct: 117 SLDPPPLN-NGKSSDGRRKNVNEPVVAFGPPGSSGELNVSVIVSQVPPDFSIEAFGGPKE 175

Query: 200 VGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTR 259
           VGEAVVRTITGS  R DVKG+L ES+LREDSLR + YY+LEFRVESP+F RHN+AVCC R
Sbjct: 176 VGEAVVRTITGS--RLDVKGTLTESSLREDSLRKVNYYKLEFRVESPAFHRHNLAVCCAR 233

Query: 260 NGKLYTLNAQAPESVWPEVKSELYTVADSFSLTS 293
            G+LYTLNAQAPES WP VK++ Y +ADSFS+ S
Sbjct: 234 GGRLYTLNAQAPESAWPNVKADFYRIADSFSIIS 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535075|ref|XP_003536074.1| PREDICTED: uncharacterized protein LOC100801831 [Glycine max]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/292 (71%), Positives = 242/292 (82%), Gaps = 20/292 (6%)

Query: 1   MALQRYCFHTCRNASSHKVYMTQSSNDRKESLQDVSARPGKSPAEEFAPLAAKFNRRLLV 60
           MA+Q       R  + + + + Q S DR +         G+ PAEEFAPLA KF RRLLV
Sbjct: 3   MAVQ------ARLGACNPIRIPQCSGDRDDG--------GRPPAEEFAPLATKFQRRLLV 48

Query: 61  GVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFEFIYPDS 120
           GVG+ASLVAVGANFGG+TSFLLGLSP+SGRNLKLDVLYPIGGYSRC+D  EGFEFIYP +
Sbjct: 49  GVGSASLVAVGANFGGITSFLLGLSPQSGRNLKLDVLYPIGGYSRCVDTKEGFEFIYPAN 108

Query: 121 WVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSV 180
           WVGDQTLLYRAA+K E ERSLDPPP+N+       RR NINEP+VAFGPPGSTGELNVSV
Sbjct: 109 WVGDQTLLYRAAKKREMERSLDPPPLNER------RRSNINEPVVAFGPPGSTGELNVSV 162

Query: 181 IVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELE 240
           IVS V P+FSIEAFGGP EVGEAVVR+ITGSG+RPDVKG+LI+S+LREDS+ ++KYYELE
Sbjct: 163 IVSSVAPEFSIEAFGGPDEVGEAVVRSITGSGQRPDVKGTLIKSSLREDSVTNVKYYELE 222

Query: 241 FRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT 292
           FRVESPSF+RHN++VCC R+G+L+TLNAQAPES WP +KSE Y +A+SFSLT
Sbjct: 223 FRVESPSFRRHNVSVCCARDGRLFTLNAQAPESEWPGLKSEFYRIANSFSLT 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479660|ref|NP_001154592.1| Photosystem II reaction center PsbP family protein [Arabidopsis thaliana] gi|332640715|gb|AEE74236.1| Photosystem II reaction center PsbP family protein [Arabidopsis thaliana]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/252 (74%), Positives = 221/252 (87%), Gaps = 6/252 (2%)

Query: 42  SPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIG 101
           +PAEEF+PL  KFNRRLL+GVG++S++A+GANFGG TSF+LGLSP  GRNLKLDV+YPIG
Sbjct: 35  TPAEEFSPLVEKFNRRLLLGVGSSSVLAIGANFGGTTSFILGLSPGIGRNLKLDVIYPIG 94

Query: 102 GYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNIN 161
           GYSRCID  EGFEFIYP +WVGDQTLLYRAAEKSE E SLD PP      + N RR+N+N
Sbjct: 95  GYSRCIDTVEGFEFIYPATWVGDQTLLYRAAEKSERENSLDLPP------ARNSRRKNVN 148

Query: 162 EPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSL 221
           EP+VAFGPPGSTGELNVSVIVSPV P FSIEAFGGPKEVGEA+VRT+TGSG+R D+KG+L
Sbjct: 149 EPVVAFGPPGSTGELNVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVTGSGQRADLKGTL 208

Query: 222 IESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSE 281
           +ES++R+DS R++KYYELEF+VESP F+RHN+AVCC  +G+LYTLNAQAPES W EVKSE
Sbjct: 209 LESSIRQDSERNLKYYELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQAPESAWSEVKSE 268

Query: 282 LYTVADSFSLTS 293
           +YT A SF++ S
Sbjct: 269 IYTTAKSFNIIS 280

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523033|ref|XP_004168529.1| PREDICTED: uncharacterized protein LOC101227843 [Cucumis sativus]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/264 (72%), Positives = 225/264 (85%), Gaps = 5/264 (1%)

Query: 31  SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESG 89
           S Q  S  P GKS AEEFAPLA  F RRL+VG+G+ASLVA+GANFGGVTSFLLGLSPE+ 
Sbjct: 21  SAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENS 80

Query: 90  RNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKN 149
           R L++DV+YPIGGYSRCID NEGFEFIYP SWVGDQ LLYRAAEKSE+ERSLDPPP+  +
Sbjct: 81  RRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLYRAAEKSEYERSLDPPPLTDS 140

Query: 150 VKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTIT 209
             + + RR+N+NEP+VAFGPPGS+GELNVSVIVSPVP DFSIEAFGGP EVGEAV+RTIT
Sbjct: 141 --TMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGEAVIRTIT 198

Query: 210 GSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQ 269
            + +R D+KG+LI++ LRED L   KYYELEF+VES +F+RHNIAVCC R GKLYTLNAQ
Sbjct: 199 RASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAFRRHNIAVCCARRGKLYTLNAQ 256

Query: 270 APESVWPEVKSELYTVADSFSLTS 293
           APES W  +KS++ T+A+SF L++
Sbjct: 257 APESEWAGLKSKMKTIANSFCLSA 280

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441699|ref|XP_003591127.1| PsbP-like protein [Medicago truncatula] gi|355480175|gb|AES61378.1| PsbP-like protein [Medicago truncatula]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/273 (70%), Positives = 229/273 (83%), Gaps = 10/273 (3%)

Query: 21  MTQSSNDRKESLQDVSARPGKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSF 80
           +T+ S+DR+E L+ V      SPAEE   LA KF RRLLVG+G+ASLVA+GANFGG+TSF
Sbjct: 21  VTRCSSDREEKLK-VKEAVVWSPAEE---LAKKFERRLLVGIGSASLVALGANFGGITSF 76

Query: 81  LLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERS 140
            LGLSP++GR LKLDVLYPIGGY+R ID  EGFEFIYP +WVGDQTLLYRAA++ E E S
Sbjct: 77  FLGLSPQNGRKLKLDVLYPIGGYTRYIDTREGFEFIYPVNWVGDQTLLYRAAKRREMELS 136

Query: 141 LDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEV 200
           LDPPP+N   +S      N+NEP+VAFGPPGS GELNVSVIVSPV  DFSIEAFG P+EV
Sbjct: 137 LDPPPLNLRPRS------NVNEPVVAFGPPGSNGELNVSVIVSPVALDFSIEAFGSPEEV 190

Query: 201 GEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRN 260
           GEAV+RTITGSG+RPDVKG+L++S+LRED++R+ KYYELEFRVESPSF+RHN+ VCC R 
Sbjct: 191 GEAVIRTITGSGQRPDVKGTLVKSSLREDTVRNAKYYELEFRVESPSFRRHNVCVCCARG 250

Query: 261 GKLYTLNAQAPESVWPEVKSELYTVADSFSLTS 293
           G+L+TLNAQAPES WP VK + YT+ADSF+LT+
Sbjct: 251 GRLFTLNAQAPESTWPGVKPDFYTIADSFNLTT 283

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454159|ref|XP_004144823.1| PREDICTED: uncharacterized protein LOC101221939 [Cucumis sativus]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/275 (70%), Positives = 229/275 (83%), Gaps = 7/275 (2%)

Query: 22  TQSSNDRKE--SLQDVSARP-GKSPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVT 78
           +Q  N R+   S Q  S  P GKS AEEFAPLA  F RRL+VG+G+ASLVA+GANFGGVT
Sbjct: 10  SQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIGANFGGVT 69

Query: 79  SFLLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFE 138
           SFLLGLSPE+ R L++DV+YPIGGYSRCID NEGFEFIYP SWVGDQ LLYRAAEK E+E
Sbjct: 70  SFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLYRAAEKLEYE 129

Query: 139 RSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPK 198
           RSLDPPP+  +  + + RR+N+NEP+VAFGPPGS+GELNVSVIVSPVP DFSIEAFGGP 
Sbjct: 130 RSLDPPPLTDS--TMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPN 187

Query: 199 EVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCT 258
           EVGEAV+RTIT + +R D+KG+LI++ LRED L   KYYELEF+VES +F+RHNIAVCC 
Sbjct: 188 EVGEAVIRTITRASKRSDLKGTLIQTTLREDLL--TKYYELEFKVESTAFRRHNIAVCCA 245

Query: 259 RNGKLYTLNAQAPESVWPEVKSELYTVADSFSLTS 293
           R GKLYTLNAQAPES W  +KS++ T+A+SF L++
Sbjct: 246 RRGKLYTLNAQAPESEWAGLKSKMKTIANSFCLSA 280

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242055511|ref|XP_002456901.1| hypothetical protein SORBIDRAFT_03g045040 [Sorghum bicolor] gi|241928876|gb|EES02021.1| hypothetical protein SORBIDRAFT_03g045040 [Sorghum bicolor]

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 171/253 (67%), Positives = 207/253 (81%), Gaps = 8/253 (3%)

Query: 42  SPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIG 101
           SPA+EFA LAA F RRL+VG  TA+  AVGANFGGVTSFLL LSPE GR+L+LDVLYP+G
Sbjct: 32  SPAQEFASLAAVFRRRLVVGATTAAAAAVGANFGGVTSFLLSLSPELGRSLRLDVLYPVG 91

Query: 102 GYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRR-QNI 160
           G++RC+D + GFEFIYP SWVGDQTLLYR  +K+E +RSLDPPP+       NG+  +NI
Sbjct: 92  GFTRCLDSDNGFEFIYPSSWVGDQTLLYREVKKAELQRSLDPPPL------PNGKSPRNI 145

Query: 161 NEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGS 220
           +EP+ AFGPPGS+GELNVSVIVSPVP DFSIEAFG PK+VGE V+R I  + R PD+  +
Sbjct: 146 SEPVAAFGPPGSSGELNVSVIVSPVPRDFSIEAFGSPKDVGEVVLRRIARTRRSPDINAT 205

Query: 221 LIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKS 280
           LI++ LRED+  S+KYY+LEFRVESPSFQRHN+AVCC R+GKLYT+NAQAPES W  V+ 
Sbjct: 206 LIDAALREDA-DSVKYYKLEFRVESPSFQRHNVAVCCARDGKLYTMNAQAPESAWKAVQK 264

Query: 281 ELYTVADSFSLTS 293
           E + +ADSFSL +
Sbjct: 265 EFFAMADSFSLVN 277

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125573228|gb|EAZ14743.1| hypothetical protein OsJ_04669 [Oryza sativa Japonica Group]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 167/252 (66%), Positives = 205/252 (81%), Gaps = 2/252 (0%)

Query: 42  SPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIG 101
           SPA+EFA LAA F RRL+VG  TA+  AVGANFGGVTSFLLGLSP+ GR+L+LDVLYP+G
Sbjct: 32  SPAQEFAALAAVFRRRLVVGATTAAAAAVGANFGGVTSFLLGLSPQLGRSLRLDVLYPVG 91

Query: 102 GYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNIN 161
           G++RC+D + GFEFIYP SWVGDQTLLYR A+++E +RSLDPPP+      S  R +NI+
Sbjct: 92  GFTRCLDSDNGFEFIYPASWVGDQTLLYRGAKRAELQRSLDPPPLANG--RSPSRPRNIS 149

Query: 162 EPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSL 221
           EP+ AFGPPGS+GELNVSVIVSPVP DFSIEAFGGPK+VGE V+R I  + R  D+  +L
Sbjct: 150 EPVAAFGPPGSSGELNVSVIVSPVPQDFSIEAFGGPKDVGEVVLRRIAKTKRGADINATL 209

Query: 222 IESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSE 281
           +++ LRED   ++KYY+LEFRVESPSF+R N+AVCC ++GKLYTLNAQAPES W  V+ E
Sbjct: 210 LDAALREDPANNVKYYKLEFRVESPSFRRRNVAVCCAKDGKLYTLNAQAPESAWKAVRKE 269

Query: 282 LYTVADSFSLTS 293
              +ADSFSL +
Sbjct: 270 FLAMADSFSLVA 281

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2079792	280	AT3G05410 [Arabidopsis thalian	0.839	0.878	0.742	4.9e-101
TAIR|locus:2100681	230	PPL1 "PsbP-like protein 1" [Ar	0.372	0.473	0.339	7.7e-13
TAIR|locus:2011711	247	AT1G76450 [Arabidopsis thalian	0.491	0.582	0.280	0.00023
TAIR|locus:2039727	238	PnsL1 "Photosynthetic NDH subc	0.313	0.386	0.270	0.00085

TAIR|locus:2079792 AT3G05410 [Arabidopsis thaliana (taxid:3702)]

 Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
 Identities = 187/252 (74%), Positives = 221/252 (87%)

Query:    42 SPAEEFAPLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIG 101
             +PAEEF+PL  KFNRRLL+GVG++S++A+GANFGG TSF+LGLSP  GRNLKLDV+YPIG
Sbjct:    35 TPAEEFSPLVEKFNRRLLLGVGSSSVLAIGANFGGTTSFILGLSPGIGRNLKLDVIYPIG 94

Query:   102 GYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNIN 161
             GYSRCID  EGFEFIYP +WVGDQTLLYRAAEKSE E SLD PP      + N RR+N+N
Sbjct:    95 GYSRCIDTVEGFEFIYPATWVGDQTLLYRAAEKSERENSLDLPP------ARNSRRKNVN 148

Query:   162 EPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSL 221
             EP+VAFGPPGSTGELNVSVIVSPV P FSIEAFGGPKEVGEA+VRT+TGSG+R D+KG+L
Sbjct:   149 EPVVAFGPPGSTGELNVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVTGSGQRADLKGTL 208

Query:   222 IESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSE 281
             +ES++R+DS R++KYYELEF+VESP F+RHN+AVCC  +G+LYTLNAQAPES W EVKSE
Sbjct:   209 LESSIRQDSERNLKYYELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQAPESAWSEVKSE 268

Query:   282 LYTVADSFSLTS 293
             +YT A SF++ S
Sbjct:   269 IYTTAKSFNIIS 280

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

TAIR|locus:2100681 PPL1 "PsbP-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 7.7e-13, P = 7.7e-13
 Identities = 39/115 (33%), Positives = 64/115 (55%)

Query:   179 SVIVSPVPPDF-SIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYY 237
             SV V+ VP    +I+ FG PK++ E +++ +      P+ K +LI+++  E  +    YY
Sbjct:   120 SVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAP---PNQKTTLIDAS--EHDVDGKTYY 174

Query:   238 ELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT 292
             + EF V++ ++ RH +      NG  YTL   A E  W ++K  L+TV DSF +T
Sbjct:   175 QFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSFKIT 229

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2011711 AT1G76450 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 0.00023, P = 0.00023
 Identities = 46/164 (28%), Positives = 76/164 (46%)

Query:   133 EKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFS-I 191
             E ++FE S+ P          NG +      I AF P   T   NVS+ ++ + PDF+ +
Sbjct:    94 ETNKFEISI-PQDWQVGQAEPNGFKS-----ITAFYPQ-ETSTSNVSIAITGLGPDFTRM 146

Query:   192 EAFGGPKEVGEAVVRTITGSGRRP-DVKGSLIESNLREDSLRSIKYYELEFRVESPSFQR 250
             E+FG  +   E +V  +  S ++P  V   LI      DS  S  +Y +E+ +++P   R
Sbjct:   147 ESFGKVEAFAETLVSGLDRSWQKPVGVTAKLI------DSRASKGFYYIEYTLQNPGEAR 200

Query:   251 HNI--AVCCTRNG---KLYTLNAQAPESVWPEVKSELYTVADSF 289
              ++  A+    NG   +LYT+  Q  +    E  S++     SF
Sbjct:   201 KHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKTVKSF 244

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

TAIR|locus:2039727 PnsL1 "Photosynthetic NDH subcomplex L 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 0.00085, Sum P(2) = 0.00085
 Identities = 26/96 (27%), Positives = 43/96 (44%)

Query:   196 GPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAV 255
             GP E  E V   +      P+   ++ +   R +  ++  YY  E+ + +P +   + A 
Sbjct:   144 GPME--EVVYDLVKHKFAAPNQVATIYDMKERVEDGKN--YYTFEYGLRTPIYATTSFAT 199

Query:   256 CCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSL 291
                 N + YTL   A E  W +VK +L  VADS  +
Sbjct:   200 VAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKI 235

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
pfam01789	163	pfam01789, PsbP, PsbP	6e-30
PLN00059	286	PLN00059, PLN00059, PsbP domain-containing protein	3e-05

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score =  110 bits (277), Expect = 6e-30
 Identities = 63/197 (31%), Positives = 88/197 (44%), Gaps = 44/197 (22%)

Query: 99  PIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQ 158
              G+   +D ++G+EF+YP  W                               S+G   
Sbjct: 6   TNAGFQAYVDTDDGYEFLYPTGWW--------------------------REVVSDG--- 36

Query: 159 NINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTIT---GSGRRP 215
               P V F     + E NVSV++SPV    S+E  G P+EVGE ++R +    GSGR  
Sbjct: 37  ----PDVVFHDLIESDE-NVSVVISPVDKKKSLEDLGSPEEVGERLLRGVLAPEGSGR-- 89

Query: 216 DVKGSLIESNLREDSLRSIKYYELEFRVESPS-FQRHNIAVCCTRNGKLYTLNAQAPESV 274
             +  L+E++ RE   +   YY+LE+ V       RH +A      GKLYTL AQ  E  
Sbjct: 90  --EAELLEASEREVDGK--TYYDLEYLVRLADGGDRHELATVTVDRGKLYTLAAQTNEKR 145

Query: 275 WPEVKSELYTVADSFSL 291
           W +VK     V DSFS+
Sbjct: 146 WFKVKKLFERVVDSFSV 162

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

>gnl|CDD|177690 PLN00059, PLN00059, PsbP domain-containing protein 1; Provisional

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 54/206 (26%), Positives = 82/206 (39%), Gaps = 59/206 (28%)

Query: 107 IDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVA 166
           ID  +G+ F YP +W+       R A    F R  DP  +++N+              V 
Sbjct: 113 IDTFDGYSFKYPQNWIQ-----VRGAGADIFFR--DPVVLDENLS-------------VE 152

Query: 167 FGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGS--GRRPDVKGSLIES 224
           F  P S+                S+E  G P+EVG+ V+R         R  VK    E+
Sbjct: 153 FSSPSSSKYT-------------SLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKR---EA 196

Query: 225 NLREDSLRSIK----YYELEFRVESPS-----------------FQRHNIAVCCTRNGKL 263
           N+   S R       YY++E  ++S +                 + R  +AV    N +L
Sbjct: 197 NILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRL 256

Query: 264 YTLNAQAPESVWPEVKSELYTVADSF 289
           Y++  Q PE V+ E + +L  V DSF
Sbjct: 257 YSIRLQTPEKVFLEEEKDLRRVMDSF 282

Length = 286

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN03152	241	hypothetical protein; Provisional	99.95
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	98.07
COG5435	147	Uncharacterized conserved protein [Function unknow	93.22
PRK11615	185	hypothetical protein; Provisional	87.99
PF07174	297	FAP: Fibronectin-attachment protein (FAP); InterPr	81.41

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=3.9e-46  Score=341.99  Aligned_cols=156  Identities=28%  Similarity=0.454  Sum_probs=143.4

Q ss_pred             CCceEEeeCCCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCceEEeCCCCCCCCceEEE
Q 022699          101 GGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSV  180 (293)
Q Consensus       101 ~gf~~y~D~~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep~v~F~p~~~~~~~nVSV  180 (293)
                      .||+.|+|+.|||+|+||.+|++++.                                  .|++++|+|++ +.+|||||
T Consensus       107 ~~l~~y~D~~DGY~FlYP~GWi~V~~----------------------------------~G~DVvFrD~I-e~~ENVSV  151 (286)
T PLN00059        107 PVFREYIDTFDGYSFKYPQNWIQVRG----------------------------------AGADIFFRDPV-VLDENLSV  151 (286)
T ss_pred             cccceeEcCCCCeEEeCCCCCeEecc----------------------------------CCCceEEeccC-ccccceEE
Confidence            58999999999999999999987532                                  37899999999 89999999


Q ss_pred             EEeeCCC--CCCccccCCHHHHHHHHHHhHhcC----CCCCCccceEEEeeeeecccCCceEEEEEEEeeCC--------
Q 022699          181 IVSPVPP--DFSIEAFGGPKEVGEAVVRTITGS----GRRPDVKGSLIESNLREDSLRSIKYYELEFRVESP--------  246 (293)
Q Consensus       181 vVsPv~~--~~sI~d~GspeeVa~~Ll~~~~~~----~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~--------  246 (293)
                      +|+|++.  +++|+|||+|+|||++|+++++..    ++|++++++||+|.+|++ .||++||+|||.++++        
T Consensus       152 ~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~-~DGktYY~lEY~Vks~~~~n~~~~  230 (286)
T PLN00059        152 EFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVA-DDGKLYYQVEVNIKSYANNNELAV  230 (286)
T ss_pred             EEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEc-cCCcEEEEEEEEEEcCcccccccc
Confidence            9998873  679999999999999999999832    368889999999999975 5899999999999984        


Q ss_pred             ---------CcceEEEEEEEEeCCEEEEEEeecCCCCchhhHHHHHhhhccceee
Q 022699          247 ---------SFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT  292 (293)
Q Consensus       247 ---------~~~RH~La~vaV~~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl  292 (293)
                               +|.||+|++++|.|||||||++|+||+||+|+++.|++|++||+|.
T Consensus       231 ~~qdr~~~~~w~RH~LA~v~V~nGkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~  285 (286)
T PLN00059        231 MPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVE  285 (286)
T ss_pred             cccccccccccceeeEEEEEEeCCEEEEEEcCCcHHHHHHHHHHHHHHHhheeec
Confidence                     5799999999999999999999999999999999999999999985

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=1.9e-41  Score=310.84  Aligned_cols=198  Identities=23%  Similarity=0.397  Sum_probs=164.5

Q ss_pred             cccc-eeehhhhhhHhhhhcccCCccccccCCCccccccccccccccC----CCceEEee-----------CCCceEEec
Q 022699           54 FNRR-LLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPI----GGYSRCID-----------INEGFEFIY  117 (293)
Q Consensus        54 ~~RR-~llg~~s~~a~al~anf~G~ts~ll~~~~e~~~~~~ld~~~p~----~gf~~y~D-----------~~~GY~F~y  117 (293)
                      ..|| +|+|+..+.++.+           +..++.-|++..+..+-|.    .||..|.-           ...||+|+|
T Consensus        43 ~~rr~~~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~Fly  111 (263)
T PLN00067         43 IHRRELLLGLALAPLILI-----------APEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFIL  111 (263)
T ss_pred             hHHHHHHhhhhhhhhhhc-----------cCCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeC
Confidence            4566 7777655533332           2224455788777666443    36777762           267999999


Q ss_pred             cCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCc--eEEeCCCCCCCCceEEEEEeeCC-----CCCC
Q 022699          118 PDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEP--IVAFGPPGSTGELNVSVIVSPVP-----PDFS  190 (293)
Q Consensus       118 P~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep--~v~F~p~~~~~~~nVSVvVsPv~-----~~~s  190 (293)
                      |.+|+++++   .                  |++|+++||..|.||  ++.|+|+.   ++||||+|+|+.     .+++
T Consensus       112 P~gW~~v~V---s------------------~~~sGnycqp~c~~p~~dv~F~D~~---dgnVSVIVSPV~r~t~k~~~s  167 (263)
T PLN00067        112 PPTWKQTRV---A------------------NILSGNYCQPKCAEPWVEVKFEDEK---QGKVQVVASPLIRLTNKPNAT  167 (263)
T ss_pred             CCCCcCccc---c------------------ccccCccccccccCCCceEEEeCCC---CCCEEEEEecccccccCCCCC
Confidence            999998765   1                  567789999999884  88999976   579999999984     4679


Q ss_pred             ccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCCcceEEEEEEEEeCCEEEEEEeec
Q 022699          191 IEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQA  270 (293)
Q Consensus       191 I~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~~~RH~La~vaV~~GrLYTL~aqa  270 (293)
                      |+|||+|++|+++|.+.+++   +++++++||++++++.  ||++||+|||.++.+++.||+|+++|+++||||||++|+
T Consensus       168 IeDlGsPeeVl~~Lg~~v~g---~~~~~~eLLeAs~re~--dGktYY~~E~~tp~a~~gRHnLataTV~~GkLYtf~asa  242 (263)
T PLN00067        168 IEEIGSPEKLIASLGPFVTG---NSYDPDELLETSVEKI--GDQTYYKYVLETPFALTGSHNLAKATAKGNTVVLFVVSA  242 (263)
T ss_pred             hHHccCHHHHHHHhhHHhhc---CCCCCcceEEeeeEee--CCeEEEEEEEEecCCCCCceEEEEEEEECCEEEEEEecC
Confidence            99999999999999999984   3467789999999985  999999999999999999999999999999999999999


Q ss_pred             CCCCchhhHHHHHhhhcccee
Q 022699          271 PESVWPEVKSELYTVADSFSL  291 (293)
Q Consensus       271 pE~rW~k~~~~Lr~vv~SFrv  291 (293)
                      +|+||.|+++.|++|++||+|
T Consensus       243 nEkRW~K~k~~l~~V~dSFsV  263 (263)
T PLN00067        243 SDKQWQSSEKTLKAILDSFQA  263 (263)
T ss_pred             CHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999986

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=1.2e-40  Score=306.11  Aligned_cols=154  Identities=25%  Similarity=0.398  Sum_probs=133.9

Q ss_pred             CCCceEEeeCCCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCceEEeCCCCCCCCceEE
Q 022699          100 IGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVS  179 (293)
Q Consensus       100 ~~gf~~y~D~~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep~v~F~p~~~~~~~nVS  179 (293)
                      ..||.+|.  .|||+|+||++|+++++..                               ..+++++|+|++ +.++|||
T Consensus        89 ~~gF~~y~--~dgY~FlyP~~W~~~ke~~-------------------------------~~G~dv~f~D~~-~~~eNVS  134 (260)
T PLN00042         89 NTGFLPYN--GDGFKLLVPSKWNPSKERE-------------------------------FPGQVLRFEDNF-DATSNLS  134 (260)
T ss_pred             CCCCeEee--CCCeEEecCCCCccccccc-------------------------------cCCceEEeeccc-cccccEE
Confidence            57899995  4999999999999876522                               236799999999 8999999


Q ss_pred             EEEeeCCCCCCccccCCHHH----HHHHHHHhHhcCCC---CCCc------cceEEEeeeeecccCCceEEEEEEEeeCC
Q 022699          180 VIVSPVPPDFSIEAFGGPKE----VGEAVVRTITGSGR---RPDV------KGSLIESNLREDSLRSIKYYELEFRVESP  246 (293)
Q Consensus       180 VvVsPv~~~~sI~d~Gspee----Va~~Ll~~~~~~~~---g~~~------~a~Li~A~~re~~~dG~~YY~~Ey~v~s~  246 (293)
                      |+|+|++ +.+|+|||+|+|    |++.|.++.+ +++   +.++      +++||++++|+.  ||++||+|||.++++
T Consensus       135 V~Ispt~-k~sI~dlGsPee~l~~vgylL~kq~~-a~~t~s~~Gf~p~~vata~Lleas~re~--dGk~YY~lE~~~~~a  210 (260)
T PLN00042        135 VMVTPTD-KKSITDYGSPEEFLSKVSYLLGKQAY-SGETASEGGFDANAVATAAVLESSTQEV--GGKPYYYLSVLTRTA  210 (260)
T ss_pred             EEEecCC-cCCHhhcCCHHHHHHHHHHHHHhhhc-cCccccccCcCcccccceeEEEeeeEEe--CCeEEEEEEEEEecC
Confidence            9999997 579999999999    6777777776 333   2333      679999999975  999999999999988


Q ss_pred             C---cceEEEEEEEEeCCEEEEEEeecCCCCchhh-HHHHHhhhcccee
Q 022699          247 S---FQRHNIAVCCTRNGKLYTLNAQAPESVWPEV-KSELYTVADSFSL  291 (293)
Q Consensus       247 ~---~~RH~La~vaV~~GrLYTL~aqapE~rW~k~-~~~Lr~vv~SFrv  291 (293)
                      +   +.||+|+++||.+||||||++|+||+||.|+ ++.|++|++||+|
T Consensus       211 d~d~~~RH~LatatV~~GkLYtl~aqa~EkRW~K~~~k~l~~v~~SFsV  259 (260)
T PLN00042        211 DGDEGGKHQLITATVSDGKLYICKAQAGDKRWFKGARKFVEGAASSFSV  259 (260)
T ss_pred             CCCCCCceEEEEEEEECCEEEEEEecCchhhhhHHHHHHHHHHHhceec
Confidence            6   7999999999999999999999999999998 5589999999997

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=1.2e-39  Score=284.76  Aligned_cols=155  Identities=41%  Similarity=0.699  Sum_probs=137.7

Q ss_pred             CCCceEEeeCCCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCceEEeCCCCCCCCceEE
Q 022699          100 IGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVS  179 (293)
Q Consensus       100 ~~gf~~y~D~~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep~v~F~p~~~~~~~nVS  179 (293)
                      ..||++|.|+.+||+|.||.+|.+++.                                  .+.++.|+||. +.++||+
T Consensus        20 ~~~~~~y~d~~~~y~f~~P~gW~~~~~----------------------------------~G~~v~f~d~~-~~~~nvs   64 (175)
T PF01789_consen   20 STGFQPYTDSDDGYSFLYPSGWEEVDV----------------------------------SGADVVFRDPI-DADENVS   64 (175)
T ss_dssp             -SSEEEEEECTTTEEEEEETTEEEEES----------------------------------TTEEEEEEETT-ETTSEEE
T ss_pred             CCCceEEEcCCCCEEEECCCCCeecCC----------------------------------CCeEEEEECcc-cccceEE
Confidence            478999999999999999999965322                                  36789999999 7889999


Q ss_pred             EEEeeCCCCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCC-cceEEEEEEEE
Q 022699          180 VIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPS-FQRHNIAVCCT  258 (293)
Q Consensus       180 VvVsPv~~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~-~~RH~La~vaV  258 (293)
                      |+|+|++.+++|+|||+|++||++|++.++ .+++.++.++||++.+++.  +|++||+|||.+++++ +.||+|+++++
T Consensus        65 V~v~p~~~~~sl~~lGs~~~va~~l~~~~~-~~~~~~~~a~li~a~~~~~--~g~~yY~~Ey~~~~~~~~~rh~l~~~tv  141 (175)
T PF01789_consen   65 VVVSPVPKDFSLEDLGSPEEVAERLLNGEL-ASPGSGREAELISASEREV--DGKTYYEYEYTVQSPNEGRRHNLAVVTV  141 (175)
T ss_dssp             EEEEE-STS-SGGGG-SHHHHHHHHHHHCC-CHCTSSEEEEEEEEEEEEE--TTEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEecCCcCchhhcCCHHHHHHHHhhhhc-ccccCCcceEEEEeeeeec--CCccEEEEEEEeccCCCcccEEEEEEEE
Confidence            999999987899999999999999999987 4555568899999999986  8999999999999998 99999999999


Q ss_pred             eCCEEEEEEeecCCCCchhhHHHHHhhhccceee
Q 022699          259 RNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT  292 (293)
Q Consensus       259 ~~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl  292 (293)
                      .+||||||++||||++|+++++.|++|++||+|.
T Consensus       142 ~~g~lY~l~~~a~e~~w~k~~~~l~~iv~SF~v~  175 (175)
T PF01789_consen  142 KNGKLYTLTAQAPESRWDKVEPKLRKIVDSFRVY  175 (175)
T ss_dssp             ETTEEEEEEEEEEHHHHHTCHHHHHHHHHC-EE-
T ss_pred             ECCEEEEEEEEcCHHHHHHHHHHHHHHHhcEEeC
Confidence            9999999999999999999999999999999984

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=4e-33  Score=257.72  Aligned_cols=150  Identities=20%  Similarity=0.363  Sum_probs=125.0

Q ss_pred             CCceEEeeC-------------CCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCceEEe
Q 022699          101 GGYSRCIDI-------------NEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAF  167 (293)
Q Consensus       101 ~gf~~y~D~-------------~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep~v~F  167 (293)
                      .||.+|.-+             ..+|+|+||.+|.++.+   .   +.+      +               .-.|.+..|
T Consensus        90 ~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~GW~ev~V---S---~~d------~---------------gg~~vd~Rf  142 (262)
T PLN00066         90 NGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGWEEVPV---S---IAD------L---------------GGTEIDLRF  142 (262)
T ss_pred             cceEEEecCccccCcCCCCccccCCeEEECCCCCeEeec---c---ccc------C---------------CCCceEEEe
Confidence            678888854             57899999999987654   1   011      0               112345555


Q ss_pred             CCCCCCCCceEEEEEeeCC-------CCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEE
Q 022699          168 GPPGSTGELNVSVIVSPVP-------PDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELE  240 (293)
Q Consensus       168 ~p~~~~~~~nVSVvVsPv~-------~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~E  240 (293)
                      .++   .++||+|+|+|++       .+++|+|||+|++|++.|++++++.+   .++++|+++++++.  ||++||+||
T Consensus       143 ~~~---~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~---~~e~eLl~a~~re~--dGktYY~~E  214 (262)
T PLN00066        143 ASD---KEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEP---VEEGKVLSMEVAEH--SGRTYYQFE  214 (262)
T ss_pred             ccC---CCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCC---ccccceeEeeeeec--CCcEEEEEE
Confidence            554   4799999999996       57899999999999999999988443   36789999999875  999999999


Q ss_pred             EEeeCCCcceEEEEEEEEeCCEEEEEEeecCCCCchhhHHHHHhhhccceee
Q 022699          241 FRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT  292 (293)
Q Consensus       241 y~v~s~~~~RH~La~vaV~~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl  292 (293)
                      |       .||+|+++||.+||||||++|+||+||++++++|++|++||+|+
T Consensus       215 ~-------~rH~LasaTV~~GrLYt~~asape~rW~k~~~~lr~v~dSF~V~  259 (262)
T PLN00066        215 L-------PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKDLKRIAKSFRVV  259 (262)
T ss_pred             E-------eCceEEEEEEECCEEEEEEeecchHhhHHHHHHHHHHhhceeee
Confidence            9       28999999999999999999999999999999999999999986

>PLN03152 hypothetical protein; Provisional

Probab=99.95  E-value=8.5e-28  Score=216.19  Aligned_cols=151  Identities=25%  Similarity=0.309  Sum_probs=114.0

Q ss_pred             CCCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCc-eEEeCCCCCCCCceEEEEEeeCC-
Q 022699          109 INEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEP-IVAFGPPGSTGELNVSVIVSPVP-  186 (293)
Q Consensus       109 ~~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep-~v~F~p~~~~~~~nVSVvVsPv~-  186 (293)
                      -.+||+.-||.++...-+        +|.+.          +...=+.-+-...+ .+.|..|.  ++|||||+|+|++ 
T Consensus        82 ~g~gf~~~~pp~f~di~e--------~~~~~----------~g~~~yg~~akp~~~~aRf~s~D--~sEnVSVVIspv~~  141 (241)
T PLN03152         82 YGDGFSIRVPPSFEDIME--------PEDYN----------AGLSLYGDKAKPRTFAARFASPD--GSEVLSVVIRPSNQ  141 (241)
T ss_pred             hCCceEEeCCCChhhhcC--------hhhcc----------cccceecCCCCCcceeeeecCCC--CCceEEEEEecCcc
Confidence            589999999999964311        22211          11111222222233 34587665  6899999999998 


Q ss_pred             ------CCCCccccCCHHHHHHHHHHhHhcCCCCCCc-cceEEEeeeeecccCCceEEEEEEEeeCCCcceEEEEEEEEe
Q 022699          187 ------PDFSIEAFGGPKEVGEAVVRTITGSGRRPDV-KGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTR  259 (293)
Q Consensus       187 ------~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~-~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~~~RH~La~vaV~  259 (293)
                            .+++|+|||+|+|||+.|+      |.+..+ .+..++. +++  .||++||.|||.++    .||+|++|+|.
T Consensus       142 LK~tfle~kDLtDLGsp~EVgkv~v------P~g~~~~saR~iel-~~E--~dGKtYY~lEy~v~----~RH~LaTVaVs  208 (241)
T PLN03152        142 LKITFLEAKDITDLGSLKEAAKIFV------PGGATLYSARTIKV-KEE--EGIRTYYFYEFGRD----EQHVALVATVN  208 (241)
T ss_pred             ccccccccCChhHcCCHHHHHHhhC------CCcccccccceeee-eee--cCCceeEEEEEEeC----CcEEEEEEEEc
Confidence                  5789999999999997765      443111 3445554 345  49999999999986    79999999999


Q ss_pred             CCEEEEEEeecCCCCchhhHHHHHhhhccceee
Q 022699          260 NGKLYTLNAQAPESVWPEVKSELYTVADSFSLT  292 (293)
Q Consensus       260 ~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl  292 (293)
                      +||||||+++++|+||+|++++|+++++||+|+
T Consensus       209 rGKLYTl~aSt~EkRW~Kvk~kfr~aa~SFsV~  241 (241)
T PLN03152        209 SGKAYIAGATAPESKWDDDGVKLRSAAISLTVL  241 (241)
T ss_pred             CCeEEEEecCCchhchHHHHHHHHHHHhheeeC
Confidence            999999999999999999999999999999985

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=98.07  E-value=0.00033  Score=58.06  Aligned_cols=103  Identities=14%  Similarity=0.107  Sum_probs=77.7

Q ss_pred             CceEEEEEeeCCCCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCCcceEEEE
Q 022699          175 ELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIA  254 (293)
Q Consensus       175 ~~nVSVvVsPv~~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~~~RH~La  254 (293)
                      ..|+.|+-.+++.+      -++++..++.++.+-+.-+    .-++++...-+  .+|.+-+.+||.-...+..-|...
T Consensus        27 ~~slvIsR~~l~~g------~tl~~~~~~q~~~l~~~l~----~~~~~~~~~~~--l~~~~a~~l~~~~~~~g~~v~Q~q   94 (130)
T PF08786_consen   27 GPSLVISRDPLPDG------ETLEDYLQRQLAQLRKQLP----GFQLVERQPIT--LGGRPARELEYSFRSGGQPVYQRQ   94 (130)
T ss_dssp             -EEEEEEEE---TT------S-HHHHHHHHHHHHHCCST----T-EEEEEEEEE--ETTEEEEEEEEEEEETTCEEEEEE
T ss_pred             cceEEEEeccCCCC------CCHHHHHHHHHHHHHhhCC----CcEEEeeEEEE--eCCCCeEEEEEEEeeCCEEEEEEE
Confidence            34555555566644      4677888888877752322    24777765554  589999999999998888889988


Q ss_pred             EEEEeC-CEEEEEEeecCCCCchhhHHHHHhhhccc
Q 022699          255 VCCTRN-GKLYTLNAQAPESVWPEVKSELYTVADSF  289 (293)
Q Consensus       255 ~vaV~~-GrLYTL~aqapE~rW~k~~~~Lr~vv~SF  289 (293)
                      ++...+ +++|+|+.+++....+..++.++.|++||
T Consensus        95 ~~~~~~~~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf  130 (130)
T PF08786_consen   95 AAVLLPGRRVLVFTYTAPGPFTEEQRAHWEAILKSF  130 (130)
T ss_dssp             EEEEEC-CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred             EEEEECCCEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            888887 99999999999999999999999999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=93.22  E-value=3.3  Score=36.09  Aligned_cols=112  Identities=18%  Similarity=0.170  Sum_probs=74.6

Q ss_pred             EeCCCCCCCCceEEEEEe--eCCCCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEe
Q 022699          166 AFGPPGSTGELNVSVIVS--PVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRV  243 (293)
Q Consensus       166 ~F~p~~~~~~~nVSVvVs--Pv~~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v  243 (293)
                      .+++++   ..-+|.+|+  |+..+-.      -.+..++.+..+.+.-++    -++..-.+-+  ++|..--..+|.-
T Consensus        26 ~~~~~g---t~~~sfvIsRd~~~~g~~------~~~y~~rql~~l~k~Lpg----y~~~~~~e~~--v~~~aa~~~~y~w   90 (147)
T COG5435          26 VSGDNG---TSGFSFVISRDPLEPGDT------FPEYVQRQLALLRKQLPG----YELHHRREIE--VGGAAAPLLDYQW   90 (147)
T ss_pred             EecCCC---cceeEEEEecCCCCCCCc------HHHHHHHHHHHHHhhCCC----eEEeeccccc--cCccccceeEEEe
Confidence            344554   356666665  4443322      234556666555534333    2555544333  6888888888887


Q ss_pred             eCC--Cc-ceEEEEEEEEeCCEEEEEEeecCCCCchhhHHHHHhhhccceee
Q 022699          244 ESP--SF-QRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT  292 (293)
Q Consensus       244 ~s~--~~-~RH~La~vaV~~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl  292 (293)
                      .++  ++ .-|.+.++.-+++++-+|+++++-.-=++.+....+++.||..-
T Consensus        91 ~~~~~~~r~v~q~~~~i~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p~  142 (147)
T COG5435          91 TSPEGEQRRVQQRQVFIERGDTVLIFTLTTPGEFTPSQKKAWEQVIQSFVPN  142 (147)
T ss_pred             ecCCCCCceEEEEEeecccCCeEEEEEecCCCCCCHHHHHHHHHHHHhcCCC
Confidence            774  33 33566665557889999999999999999999999999999763

>PRK11615 hypothetical protein; Provisional

Probab=87.99  E-value=11  Score=33.90  Aligned_cols=89  Identities=9%  Similarity=0.118  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCCcceEEEEEEEEeCCEEEEEEeecCCCCch
Q 022699          197 PKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWP  276 (293)
Q Consensus       197 peeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~~~RH~La~vaV~~GrLYTL~aqapE~rW~  276 (293)
                      .+..+.+|+.+-...-+    .-.++.-+.-+  ++|++++.++=.+...+..--+-.+++..++||-||.+..|.+.-.
T Consensus        96 Ld~la~rl~~qQr~rdp----~lqvvsnK~i~--i~G~~~qQLDS~~t~~Gqk~~SSvvL~~v~~rl~tlQitlpA~nqq  169 (185)
T PRK11615         96 LAVLAKRLEDQQRSRDP----QLQVVTNKAIE--LKGHKLQQLDSIISAKGQTAYSSVVLGKVDNQLLTMQITLPADNQQ  169 (185)
T ss_pred             HHHHHHHHHHHHHhhCc----CceeecceeEE--ECCeeeEEeeeeeecCCceEEEEEEEEeeCCeEEEEEEecCCCCHH
Confidence            46677888776552221    13455544443  6999999999888877666666666777899999999999999988


Q ss_pred             hhHHHHHhhhcccee
Q 022699          277 EVKSELYTVADSFSL  291 (293)
Q Consensus       277 k~~~~Lr~vv~SFrv  291 (293)
                      +....-+.|+++..+
T Consensus       170 qaq~~ae~ii~tl~~  184 (185)
T PRK11615        170 QAQTTAENIINTLVI  184 (185)
T ss_pred             HHHHHHHHHHhheec
Confidence            988899999988764

>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP)

Probab=81.41  E-value=23  Score=34.08  Aligned_cols=21  Identities=29%  Similarity=0.754  Sum_probs=18.2

Q ss_pred             eEEeeCCCceEEeccCCCccc
Q 022699          104 SRCIDINEGFEFIYPDSWVGD  124 (293)
Q Consensus       104 ~~y~D~~~GY~F~yP~~W~~~  124 (293)
                      -++.|..-||+|+.|.+|+..
T Consensus       110 grvdn~~gGFS~vvP~GW~~S  130 (297)
T PF07174_consen  110 GRVDNAAGGFSYVVPAGWVES  130 (297)
T ss_pred             ccccccccceEEeccCCcccc
Confidence            477788999999999999864

Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	293
2xb3_A	165	The Structure Of Cyanobacterial Psbp Length = 165		1e-14
2lnj_A	170	Solution Structure Of Cyanobacterial Psbp (Cyanop)		2e-12

>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp Length = 165

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 50/199 (25%)
Query: 102 GYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNIN 161
           G    +D  +G+EF+YP  WV  Q                                  + 
Sbjct: 7   GLQAYVDSYDGYEFLYPRGWVQVQ----------------------------------VE 32
Query: 162 EPI-VAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITG---SGRRPDV 217
           +P+ V F     T E NVSV+V+ V    S+E  G P+EVG+ ++R I     SGR    
Sbjct: 33  DPVDVVFHDIIETTE-NVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPSESGR---- 87
Query: 218 KGSLIESNLREDSLRSIKYYELEFRVESP-----SFQRHNIAVCCTRNGKLYTLNAQAPE 272
             +LI +  ++   ++  YY LE+ V  P     + QRHN++      GK+YTL+  APE
Sbjct: 88  SSALIAATSQKADDKT--YYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPE 145
Query: 273 SVWPEVKSELYTVADSFSL 291
             WP+V+ +  T+  SF++
Sbjct: 146 ERWPKVEDQFKTIVSSFTV 164

>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From Synechocystis Sp. Pcc 6803 Length = 170

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 35/193 (18%)
Query: 100 IGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQN 159
           I    R  D  +G+EF+YP+ W+G   +  + A           P ++   +    R +N
Sbjct: 11  IASLQRYSDTKDGYEFLYPNGWIG---VDVKGA----------SPGVDVVFRDLIERDEN 57
Query: 160 INEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKG 219
           +                  SVI+S +P D ++   G   +VG   ++T+     + D + 
Sbjct: 58  L------------------SVIISEIPSDKTLTDLGTATDVGYRFMKTVN-DASQGDRQA 98
Query: 220 SLIESNLREDSLRSIKYYELEFRV-ESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEV 278
            LI +  R++  +   YY LE+RV    + +RH++A   T  GKL T +    E  W  V
Sbjct: 99  ELINAEARDEDGQV--YYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLSTAEDRWDTV 156
Query: 279 KSELYTVADSFSL 291
           KS   TVA SF +
Sbjct: 157 KSLFDTVASSFHV 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	6e-36
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	8e-32
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	6e-28
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	6e-25

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score =  126 bits (316), Expect = 6e-36
 Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 35/201 (17%)

Query: 92  LKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVK 151
           L       I    R  D  +G+EF+YP+ W+G                            
Sbjct: 3   LGSCGGVGIASLQRYSDTKDGYEFLYPNGWIGVDV------------------------- 37

Query: 152 SSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGS 211
                +       V F       E N+SVI+S +P D ++   G   +VG   ++T+  +
Sbjct: 38  -----KGASPGVDVVFRDLIERDE-NLSVIISEIPSDKTLTDLGTATDVGYRFMKTVNDA 91

Query: 212 GRRPDVKGSLIESNLREDSLRSIKYYELEFRV-ESPSFQRHNIAVCCTRNGKLYTLNAQA 270
             + D +  LI +  R++  +   YY LE+RV    + +RH++A   T  GKL T +   
Sbjct: 92  -SQGDRQAELINAEARDEDGQ--VYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLST 148

Query: 271 PESVWPEVKSELYTVADSFSL 291
            E  W  VKS   TVA SF +
Sbjct: 149 AEDRWDTVKSLFDTVASSFHV 169

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score =  115 bits (288), Expect = 8e-32
 Identities = 55/198 (27%), Positives = 83/198 (41%), Gaps = 42/198 (21%)

Query: 99  PIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQ 158
              G    +D  +G+EF+YP  WV  Q                                 
Sbjct: 4   ATSGLQAYVDSYDGYEFLYPRGWVQVQV-------------------------------- 31

Query: 159 NINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVK 218
             +   V F     T E NVSV+V+ V    S+E  G P+EVG+ ++R I          
Sbjct: 32  -EDPVDVVFHDIIETTE-NVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPSESGR-S 88

Query: 219 GSLIESNLREDSLRSIKYYELEFRVESP-----SFQRHNIAVCCTRNGKLYTLNAQAPES 273
            +LI +  ++       YY LE+ V  P     + QRHN++      GK+YTL+  APE 
Sbjct: 89  SALIAATSQKAD--DKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEE 146

Query: 274 VWPEVKSELYTVADSFSL 291
            WP+V+ +  T+  SF++
Sbjct: 147 RWPKVEDQFKTIVSSFTV 164

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 97.3 bits (241), Expect = 6e-25
 Identities = 37/196 (18%), Positives = 57/196 (29%), Gaps = 47/196 (23%)

Query: 110 NEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGP 169
            +GF+   P  W  ++ + Y                                   + F  
Sbjct: 14  GDGFKLQIPSKWNPNKEVEYPGQV-------------------------------LRFED 42

Query: 170 PGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVV----------RTITGSGRRPDVKG 219
                  NV V ++P     SI  FG P++    V           +T +  G   D   
Sbjct: 43  NFDATS-NVIVAITPTDKK-SITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVA 100

Query: 220 SLIESNLREDSLRSIKYYELEFRVESPSF---QRHNIAVCCTRNGKLYTLNAQAPESVWP 276
                      +   +YY L     +       +H +      +GKLY   AQA +  W 
Sbjct: 101 IANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWF 160

Query: 277 -EVKSELYTVADSFSL 291
              K  +   A SFSL
Sbjct: 161 KGAKKFVENTATSFSL 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	98.4
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	96.66

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=7.7e-39  Score=275.04  Aligned_cols=156  Identities=34%  Similarity=0.607  Sum_probs=141.1

Q ss_pred             CCCceEEeeCCCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCceEEeCCCCCCCCceEE
Q 022699          100 IGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVS  179 (293)
Q Consensus       100 ~~gf~~y~D~~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep~v~F~p~~~~~~~nVS  179 (293)
                      ..||++|.|+.+||+|+||.+|+.+..                               .  .+++++|+||+ +..+||+
T Consensus         5 ~~g~~~~~D~~~gysf~~P~~W~~~~~-------------------------------~--~g~~v~f~d~~-~~~~~v~   50 (165)
T 2xb3_A            5 TSGLQAYVDSYDGYEFLYPRGWVQVQV-------------------------------E--DPVDVVFHDII-ETTENVS   50 (165)
T ss_dssp             -CCEEEEEETTTTEEEEEETTEEEECC-------------------------------C--TTEEEEEEESS-CTTSEEE
T ss_pred             CCCceEEEcCCCCEEEEcCCCCeEecC-------------------------------C--CCceEEEECcc-cCCceEE
Confidence            478999999999999999999976321                               0  16789999998 7789999


Q ss_pred             EEEeeCCCCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCC-----cceEEEE
Q 022699          180 VIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPS-----FQRHNIA  254 (293)
Q Consensus       180 VvVsPv~~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~-----~~RH~La  254 (293)
                      |+|+|++...+|++||+|++|+++|+++.+ +++++++.++|+++.+|+  .+|++||+|||.+++++     +.||+|+
T Consensus        51 V~v~p~~~~~~l~~~G~~e~va~~l~~~~~-~~~~~~~~~~l~~a~~r~--~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~  127 (165)
T 2xb3_A           51 VVVNTVASTKSLEELGSPEEVGDRLLRNII-APSESGRSSALIAATSQK--ADDKTYYILEYAVTLPGDGNTAQQRHNLS  127 (165)
T ss_dssp             EEEEECSSCCCSGGGCCHHHHHHHHHHHTT-SCTTSSCEEEEEEEEEEE--ETTEEEEEEEEEEECC-----CCEEEEEE
T ss_pred             EEEecCCCCCChHHcCCHHHHHHHHHHHhh-cCCCCCcceEEEEeeeee--cCCceEEEEEEEEecCCCccCccccEEEE
Confidence            999999966799999999999999999988 566778899999999996  49999999999999988     8999999


Q ss_pred             EEEEeCCEEEEEEeecCCCCchhhHHHHHhhhccceee
Q 022699          255 VCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT  292 (293)
Q Consensus       255 ~vaV~~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl  292 (293)
                      ++++.+||||+|++|+||++|+++++.|++|++||+++
T Consensus       128 ~~~v~~g~lY~l~~sape~~w~~~~~~l~~v~~SF~v~  165 (165)
T 2xb3_A          128 SIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFTVY  165 (165)
T ss_dssp             EEEEETTEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEC
T ss_pred             EEEEECCEEEEEEEecCHHHhHHHHHHHHHHHhhEEeC
Confidence            99999999999999999999999999999999999986

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=1.1e-38  Score=279.44  Aligned_cols=155  Identities=24%  Similarity=0.370  Sum_probs=128.0

Q ss_pred             cCCCceEEeeCCCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCceEEeCCCCCCCCceE
Q 022699           99 PIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNV  178 (293)
Q Consensus        99 p~~gf~~y~D~~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep~v~F~p~~~~~~~nV  178 (293)
                      +..||++|.  .+||+|+||.+|+.+++..                               ..+++++|+|+. +.++||
T Consensus         5 ~~~g~~~y~--~~gysf~yP~~W~~~~~~~-------------------------------~~G~~~~f~d~~-~~~~nv   50 (177)
T 1v2b_A            5 TDTDFQTYN--GDGFKLQIPSKWNPNKEVE-------------------------------YPGQVLRFEDNF-DATSNV   50 (177)
T ss_dssp             --CCEEEEE--CSSEEEEEETTCEECCCCC-------------------------------STTEEEEEEETT-EEEEEE
T ss_pred             CCCCceEEe--cCCEEEEcCCCCccccccc-------------------------------CCCceEEEeCCc-CCCccE
Confidence            458999997  9999999999998765411                               125789999998 788999


Q ss_pred             EEEEeeCCCCCCccccCCHHHH----HHHHHHhHhcCC---------CCCCccceEEEeeeeecccCCceEEEEEEEeeC
Q 022699          179 SVIVSPVPPDFSIEAFGGPKEV----GEAVVRTITGSG---------RRPDVKGSLIESNLREDSLRSIKYYELEFRVES  245 (293)
Q Consensus       179 SVvVsPv~~~~sI~d~GspeeV----a~~Ll~~~~~~~---------~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s  245 (293)
                      +|+|+|++ +++|+|||+|++|    ++.|+++.+ ++         +++.++++||++.+|+.  ||++||+|||.+++
T Consensus        51 sV~v~p~~-~~si~dlGspe~~~~~v~~~l~~~~~-~~~~~~~~gf~~~~~~~a~ll~a~~r~~--~G~~YY~~E~~~~~  126 (177)
T 1v2b_A           51 IVAITPTD-KKSITDFGSPEQFLSQVDYLLGRQAY-SGKTDSEGGFESDAVAIANVLETSTAEV--GGKQYYYLSILTRT  126 (177)
T ss_dssp             EEEEEECS-CSSGGGGCSHHHHHHHTGGGC-------------------CCCEEEEEEEEEEEE--TTEEEEEEEEEEEC
T ss_pred             EEEEeCCC-CCChhHCCCHHHHHHHHHHHHHHHhh-cccccccCCcccCcccceEEEEeEEEEe--CCeEEEEEEEEEec
Confidence            99999997 5899999999995    666666655 22         24458899999999985  99999999999999


Q ss_pred             CC---cceEEEEEEEEeCCEEEEEEeecCCCCchhh-HHHHHhhhcccee
Q 022699          246 PS---FQRHNIAVCCTRNGKLYTLNAQAPESVWPEV-KSELYTVADSFSL  291 (293)
Q Consensus       246 ~~---~~RH~La~vaV~~GrLYTL~aqapE~rW~k~-~~~Lr~vv~SFrv  291 (293)
                      ++   +.||+|++++|.+||||||++||||++|++. ++.|++|++||+|
T Consensus       127 ~~g~e~~rH~l~~~tv~~gkLY~l~~~a~e~~W~k~~~~~l~~v~~SF~v  176 (177)
T 1v2b_A          127 ADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSL  176 (177)
T ss_dssp             -----CCEEEEEEEEEETTEEEEEEEEEEGGGCSTTTTHHHHHHHHTCEE
T ss_pred             CCCCccccEEEEEEEEECCEEEEEEEecCHHHhhhhHHHHHHHHHhheec
Confidence            88   7999999999999999999999999999995 9999999999997

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=1.4e-39  Score=282.09  Aligned_cols=159  Identities=32%  Similarity=0.560  Sum_probs=143.1

Q ss_pred             CCCceEEeeCCCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCceEEeCCCCCCCCceEE
Q 022699          100 IGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVS  179 (293)
Q Consensus       100 ~~gf~~y~D~~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep~v~F~p~~~~~~~nVS  179 (293)
                      ..||++|.|+.+||+|+||++|..+..   .                  ++         -.+.+++|+||. +.++||+
T Consensus        11 ~~g~~~y~d~~~gy~f~~P~gW~~~~~---~------------------~~---------~~g~~v~f~d~~-~~~~nvs   59 (170)
T 2lnj_A           11 IASLQRYSDTKDGYEFLYPNGWIGVDV---K------------------GA---------SPGVDVVFRDLI-ERDENLS   59 (170)
Confidence            378999999999999999999986421   1                  00         025789999999 7889999


Q ss_pred             EEEeeCCCCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCC-CcceEEEEEEEE
Q 022699          180 VIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESP-SFQRHNIAVCCT  258 (293)
Q Consensus       180 VvVsPv~~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~-~~~RH~La~vaV  258 (293)
                      |+|+|++..++|+|||+|++|+++|++.++ +++++++.++||++.+++  .||++||+|||.++++ ++.||+|+++++
T Consensus        60 V~v~p~~~~~si~d~G~pe~va~~l~~~~~-~~~~~~~~a~li~a~~~~--~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v  136 (170)
T 2lnj_A           60 VIISEIPSDKTLTDLGTATDVGYRFMKTVN-DASQGDRQAELINAEARD--EDGQVYYTLEYRVLVGDNVERHDLASVTT  136 (170)
Confidence            999999966899999999999999999988 666778999999999996  4999999999999998 799999999999


Q ss_pred             eCCEEEEEEeecCCCCchhhHHHHHhhhccceee
Q 022699          259 RNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT  292 (293)
Q Consensus       259 ~~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl  292 (293)
                      .+||||+|++|+||++|++.++.|++|++||+|+
T Consensus       137 ~~gklY~l~~~ape~~w~~~~~~l~~v~~SF~v~  170 (170)
T 2lnj_A          137 NRGKLITFDLSTAEDRWDTVKSLFDTVASSFHVY  170 (170)
Confidence            9999999999999999999999999999999985

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=98.40  E-value=1e-05  Score=67.80  Aligned_cols=104  Identities=6%  Similarity=-0.070  Sum_probs=79.1

Q ss_pred             ceEEEEEeeCCCCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCCcceEEEEE
Q 022699          176 LNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAV  255 (293)
Q Consensus       176 ~nVSVvVsPv~~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~~~RH~La~  255 (293)
                      -|+.|...+++.+      .++++..++-++.+.+.-++    -+++......  .+|.+--.+||.-...+..+|.+-+
T Consensus        38 ~~lvIsR~~~~~~------~~l~~~~~~q~~~l~~~l~~----y~~~~~~~~~--l~g~~a~~~e~~~~~~g~~~~Q~q~  105 (148)
T 1tu1_A           38 ASFVISRDASQGD------APFADYVARQLENAEKQLPG----FKLHKRWDIN--IHGHAAVLLDYQWQREGRDLMLRQV  105 (148)
T ss_dssp             EEEEEEEECCCTT------SCHHHHHHHHHHHHHHHSTT----CEEEEEEEEE--ETTEEEEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEeccCCCC------CCHHHHHHHHHHHHHhhCcC----cEEeeeEeEE--EcCCcEEEEEEEEccCCEEEEEEEE
Confidence            4666665566644      45666666665555423322    3566654444  4788889999998888889999999


Q ss_pred             EEEeCCEEEEEEeecCCCCchhhHHHHHhhhcccee
Q 022699          256 CCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSL  291 (293)
Q Consensus       256 vaV~~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrv  291 (293)
                      +.+..+++|.|+.++|...|+..+..++.|++||+.
T Consensus       106 ~~~~~~~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~  141 (148)
T 1tu1_A          106 FIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVP  141 (148)
T ss_dssp             EECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred             EEEECCeEEEEEEEcCCCCCHHHHHHHHHHHHhccc
Confidence            988877999999999999999999999999999986

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=96.66  E-value=0.053  Score=46.45  Aligned_cols=104  Identities=6%  Similarity=-0.026  Sum_probs=71.1

Q ss_pred             ceEEEEEeeCCCCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCCcceEE--E
Q 022699          176 LNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHN--I  253 (293)
Q Consensus       176 ~nVSVvVsPv~~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~~~RH~--L  253 (293)
                      -|+-|++.-...++       . |.+.+=+.+..+.-++    -++++-...+  ++|.+-|..||.-..+..+.+.  +
T Consensus        51 pN~vVtv~r~~~~~-------~-e~~r~el~~~~~~lp~----~~~~~r~~~~--~~G~pa~~iey~y~~~~~g~~aq~~  116 (161)
T 3lyd_A           51 PNIIGTVRRAATGA-------L-HNQRTELDQRATQLPD----YAERGRTETT--VDGFPAYHIEYAYRHHGTITIAQMI  116 (161)
T ss_dssp             CEEEEEEEEECTTH-------H-HHHHHHHHHHHTTSTT----CEEEEEEEEE--ETTEEEEEEEEEEEETTTEEEEEEE
T ss_pred             ccEEEEEEecCcHH-------H-HHHHHHHHHHHhhCCC----cEeecccccc--cCCcccEEEEEEEecCCCceEeeEE
Confidence            57888887776442       2 3333333443323333    2455544443  6999999999997777666662  3


Q ss_pred             EEEEE-eCCEEEEE--EeecCCCCchhhHHHHHhhhccceeeC
Q 022699          254 AVCCT-RNGKLYTL--NAQAPESVWPEVKSELYTVADSFSLTS  293 (293)
Q Consensus       254 a~vaV-~~GrLYTL--~aqapE~rW~k~~~~Lr~vv~SFrvl~  293 (293)
                      ..+.+ .++..|.+  +++|.+.+-+...+.++.|++||+|.+
T Consensus       117 ~~vvve~~~v~~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v~p  159 (161)
T 3lyd_A          117 TLVEVSHPHAVDIIQLTATCAGDQTADYWDTFRLMHADLTVQP  159 (161)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEET
T ss_pred             EEEEEecCCEEEEEEEEEEeccccchHHHHHHHHHhheeEecc
Confidence            44444 56666666  999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	293
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	1e-24

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 95.1 bits (236), Expect = 1e-24
 Identities = 37/197 (18%), Positives = 58/197 (29%), Gaps = 47/197 (23%)

Query: 110 NEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGP 169
            +GF+   P  W  ++ + Y                                   + F  
Sbjct: 8   GDGFKLQIPSKWNPNKEVEYPGQV-------------------------------LRFED 36

Query: 170 PGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVV----------RTITGSGRRPDVKG 219
                  NV V ++P     SI  FG P++    V           +T +  G   D   
Sbjct: 37  NFDATS-NVIVAITPTD-KKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVA 94

Query: 220 SLIESNLREDSLRSIKYYELEFRVESPSF---QRHNIAVCCTRNGKLYTLNAQAPESVWP 276
                      +   +YY L     +       +H +      +GKLY   AQA +  W 
Sbjct: 95  IANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWF 154

Query: 277 E-VKSELYTVADSFSLT 292
           +  K  +   A SFSL 
Sbjct: 155 KGAKKFVENTATSFSLA 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	98.67

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=3.4e-37  Score=265.14  Aligned_cols=154  Identities=23%  Similarity=0.351  Sum_probs=128.6

Q ss_pred             CceEEeeCCCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCceEEeCCCCCCCCceEEEE
Q 022699          102 GYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVI  181 (293)
Q Consensus       102 gf~~y~D~~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep~v~F~p~~~~~~~nVSVv  181 (293)
                      +|++|.|  |||+|+||++|+.+++                               ++..+.+++|+||. ++.+||+|+
T Consensus         2 ~~~~y~~--dgy~f~~P~~W~~~~~-------------------------------~~~~g~d~~f~d~~-~~~~nv~V~   47 (171)
T d1v2ba_           2 DFQTYNG--DGFKLQIPSKWNPNKE-------------------------------VEYPGQVLRFEDNF-DATSNVIVA   47 (171)
T ss_dssp             CEEEEEC--SSEEEEEETTCEECCC-------------------------------CCSTTEEEEEEETT-EEEEEEEEE
T ss_pred             CcccccC--CCEEEECCCCCceecc-------------------------------cCCCCceEEEeccc-cCCceEEEE
Confidence            5899987  8999999999976543                               11236788999998 899999999


Q ss_pred             EeeCCCCCCccccCCHHHHHHHHHHhHhc------------CCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCC--
Q 022699          182 VSPVPPDFSIEAFGGPKEVGEAVVRTITG------------SGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPS--  247 (293)
Q Consensus       182 VsPv~~~~sI~d~GspeeVa~~Ll~~~~~------------~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~--  247 (293)
                      |+|+. +.+|++||+|+++++.+...+.+            ..+++++.++|+++.+++.  ||++||+|||.+++++  
T Consensus        48 v~p~~-~~sl~~~G~p~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~a~v~~a~~~~~--~G~~YY~~Ey~~~~~~~~  124 (171)
T d1v2ba_          48 ITPTD-KKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEV--GGKQYYYLSILTRTADGN  124 (171)
T ss_dssp             EEECS-CSSGGGGCSHHHHHHHTGGGC------------------CCCEEEEEEEEEEEE--TTEEEEEEEEEEEC----
T ss_pred             EecCC-CcchhhccChHHHHHHHHHHHhhhhhcccccccccccccccceeEEEEeeeeec--CCEEEEEEEEEEecCCCC
Confidence            99987 77999999999998887665431            2345678899999999985  9999999999999864  


Q ss_pred             -cceEEEEEEEEeCCEEEEEEeecCCCCchhh-HHHHHhhhccceee
Q 022699          248 -FQRHNIAVCCTRNGKLYTLNAQAPESVWPEV-KSELYTVADSFSLT  292 (293)
Q Consensus       248 -~~RH~La~vaV~~GrLYTL~aqapE~rW~k~-~~~Lr~vv~SFrvl  292 (293)
                       +.||+|++++|.+||||||++|+||++|++. +..|++|++||+|.
T Consensus       125 ~~~rh~l~~~~v~~grLYtl~~~~pe~~w~~~~~~~l~~~v~SF~v~  171 (171)
T d1v2ba_         125 EGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA  171 (171)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEEEEGGGCSTTTTHHHHHHHHTCEEC
T ss_pred             CcccEEEEEEEEeCCEEEEEEEecCHHHhhhhhHHHHHHHHhceEeC
Confidence             6899999999999999999999999999985 56799999999983

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.67  E-value=5.3e-07  Score=72.92  Aligned_cols=105  Identities=6%  Similarity=-0.070  Sum_probs=85.0

Q ss_pred             ceEEEEEeeCCCCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCCcceEEEEE
Q 022699          176 LNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAV  255 (293)
Q Consensus       176 ~nVSVvVsPv~~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~~~RH~La~  255 (293)
                      .|+.|+..+.+.+      .+++++.++.+..+.+.-++    -++++...-.  ++|.+-+..||.-...+...|..-+
T Consensus        38 ~~lvIsr~~l~~~------~~l~~~~~~~~~~l~~~l~~----~~~~~~~~~~--l~g~pa~~~~~t~~~~~~~v~Q~q~  105 (144)
T d1tu1a_          38 ASFVISRDASQGD------APFADYVARQLENAEKQLPG----FKLHKRWDIN--IHGHAAVLLDYQWQREGRDLMLRQV  105 (144)
T ss_dssp             EEEEEEEECCCTT------SCHHHHHHHHHHHHHHHSTT----CEEEEEEEEE--ETTEEEEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEeecCCCC------CCHHHHHHHHHHHHHhhCCC----cEEEeeEecc--cCCCcEEEEEEEEeeCCEeEEEEEE
Confidence            4666665566544      57788888888877533222    4788765443  6999999999999988888999999


Q ss_pred             EEEeCCEEEEEEeecCCCCchhhHHHHHhhhccceee
Q 022699          256 CCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT  292 (293)
Q Consensus       256 vaV~~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl  292 (293)
                      +.+.++++|+|+++++...|+..++.++++++||+.-
T Consensus       106 ~~~~~~~~~~lt~t~~~~~~~~~~~~~~~il~Sf~p~  142 (144)
T d1tu1a_         106 FIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVPR  142 (144)
T ss_dssp             EECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEEC
T ss_pred             EEEeCCCEEEEEEecCCcCCHHHHHHHHHHHHhCccC
Confidence            9999999999999999999999999999999999864