Citrus Sinensis ID: 022719

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHccccccEEEcccccccEEEEEEEccccccccccEEEEEEEcccccccccccEEEEcccEEEcccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHccccccccccccccccEEEEEEEcccccccccccEEEEEEEccccccccccEEEEEEcEEEHHHHHHccccccccHHHHHHHHHHHHHcccccccccccHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccc
Coil and Loop (DISEMBL)
maedrynlknpAVKRILQEVKEmqsnpsddfmslpleeNIFEWQFairgpgdtefeggiyhgriqlpaeypfkppsfmlLTTKICLsisnhhpehwqpsWSVRTALVALIAFmptnpngalgsldykKEERRALAIKSreaapkfgtperQKLIDEIHEYmlskappvpqlstceeqpgnregeaqaSSIDAMVTgageglpapvgdRIIEEVQedlpasmnpnpvvagtsrevpanasgvqlqpkpetrvqkpaddrLFTWAAVGLTIAILVLLLKKFMksnghgtvfmdgs
Flexible Loop (DISEMBL)
maedrynlknpavKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNpngalgsldYKKEERRALAIksreaapkfgtpeRQKLIDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPAnasgvqlqpkpetrvqkpaDDRLFTWAAVGLTIAILVLLLKKFMKsnghgtvfmdgs
Low Complexity Region (SEG)
MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS
Disordered region (IsUnstruct)
*********************************LPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGAL****************************************************************************************************************************************RLFTWAAVGLTIAILVLLLKKFMKSNGH********
Disordered Region (DISOPRED)
***************ILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLID********************************************************************************************************FTWAAVGLTIAILVLLLKKFMKSNGHGTVFM***
Disordered Region (DISEMBL)
MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQ*****************SSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS
Disordered Region (DISPRO)
*********NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAP*******************************************************************************KPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDG*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
Q9LSP7	309	Ubiquitin-conjugating enz	yes	no	0.979	0.928	0.651	1e-106
Q9Y385	318	Ubiquitin-conjugating enz	yes	no	0.467	0.430	0.616	7e-50
Q9JJZ4	318	Ubiquitin-conjugating enz	yes	no	0.467	0.430	0.616	1e-49
Q6FQK7	246	Ubiquitin-conjugating enz	yes	no	0.430	0.512	0.422	2e-26
Q74Z34	242	Ubiquitin-conjugating enz	yes	no	0.436	0.528	0.401	8e-26
P33296	250	Ubiquitin-conjugating enz	yes	no	0.430	0.504	0.4	1e-25
Q6CMG6	251	Ubiquitin-conjugating enz	yes	no	0.433	0.505	0.404	2e-25
Q8N2K1	259	Ubiquitin-conjugating enz	no	no	0.430	0.486	0.392	5e-25
Q6BYG4	242	Ubiquitin-conjugating enz	yes	no	0.430	0.520	0.414	1e-24
Q2TA03	259	Ubiquitin-conjugating enz	no	no	0.430	0.486	0.392	2e-24

>sp|Q9LSP7|UBC32_ARATH Ubiquitin-conjugating enzyme E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/310 (65%), Positives = 231/310 (74%), Gaps = 23/310 (7%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MA++RYN KNPAVKRILQEVKEMQ+NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY
Sbjct: 1   MADERYNRKNPAVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAF 112
           HGRIQLPA+YPFKPPSFMLLT        TKICLSISN+HPEHWQPSWSVRTALVALIAF
Sbjct: 61  HGRIQLPADYPFKPPSFMLLTPNGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAF 120

Query: 113 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQ-- 170
           MPT+PNGALGS+DY K+ERR LAIKSRE  PK+G+PERQK+IDEIH+Y+LSKA  VP+  
Sbjct: 121 MPTSPNGALGSVDYPKDERRTLAIKSRETPPKYGSPERQKIIDEIHQYILSKATVVPKPL 180

Query: 171 LSTCEEQPG-NREGEAQASSIDAMVTGAGEGLPAP---VGDRIIEEVQEDLPASMNPNPV 226
              C + P    E  +Q    +A+       +      V D+IIEE  E    ++N    
Sbjct: 181 PLECSQAPSIVSEAHSQVEPQEAITVVEERSIATTDTIVDDQIIEETAE----AVNTAAS 236

Query: 227 VAGTSREVPANASGVQLQPKPETRV-----QKPADDRLFTWAAVGLTIAILVLLLKKFMK 281
           V   +  +PA    V+     E R+     QKP DDRLFTWAAVGLTIAI+VLLLKKF+K
Sbjct: 237 VVPAAAPLPAVEVVVKASVSGEQRMARRAAQKPVDDRLFTWAAVGLTIAIMVLLLKKFIK 296

Query: 282 SNGHGTVFMD 291
           SNG+ T FMD
Sbjct: 297 SNGYSTGFMD 306

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|Q9Y385|UB2J1_HUMAN Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens GN=UBE2J1 PE=1 SV=2

 Score =  197 bits (501), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 114/146 (78%), Gaps = 9/146 (6%)

Query: 3   EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
           E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHG
Sbjct: 2   ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG 60

Query: 63  RIQLPAEYPFKPPSFMLLTT--------KICLSISNHHPEHWQPSWSVRTALVALIAFMP 114
           RI LP EYP KPPS +LLT         KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct: 61  RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP 120

Query: 115 TNPNGALGSLDYKKEERRALAIKSRE 140
           T   GA+GSLDY  EERRALA KS++
Sbjct: 121 TKGEGAIGSLDYTPEERRALAKKSQD 146

Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9JJZ4|UB2J1_MOUSE Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus GN=Ube2j1 PE=1 SV=2

 Score =  197 bits (500), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 114/146 (78%), Gaps = 9/146 (6%)

Query: 3   EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
           E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHG
Sbjct: 2   ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG 60

Query: 63  RIQLPAEYPFKPPSFMLLTT--------KICLSISNHHPEHWQPSWSVRTALVALIAFMP 114
           RI LP EYP KPPS +LLT         KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct: 61  RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP 120

Query: 115 TNPNGALGSLDYKKEERRALAIKSRE 140
           T   GA+GSLDY  EERRALA KS++
Sbjct: 121 TKGEGAIGSLDYTPEERRALAKKSQD 146

Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6FQK7|UBC6_CANGA Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=UBC6 PE=3 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 84/135 (62%), Gaps = 9/135 (6%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KR+ +E K M  NP    ++ P EENI EW + I GP DT ++GG YHG +  P++YP
Sbjct: 6   AQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYP 65

Query: 72  FKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 123
           +KPP+  ++T        T++CLS+S++HP+ W P WSV T L  L++FM T      GS
Sbjct: 66  YKPPAIRMITPNGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFM-TGDESTTGS 124

Query: 124 LDYKKEERRALAIKS 138
           +   ++E++ LA KS
Sbjct: 125 ITTTQQEKKILAKKS 139

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q74Z34|UBC6_ASHGO Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=UBC6 PE=3 SV=1

 Score =  117 bits (294), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 83/137 (60%), Gaps = 9/137 (6%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KR+ +E K M  NP    ++ P E+NI  W + I GP +T +E G YHG +  P +YP
Sbjct: 6   AYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYP 65

Query: 72  FKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 123
           F PP+  +LT        T++CLS+S++HP+ W PSWSV T L  L++FM T+   ++G+
Sbjct: 66  FNPPAIRMLTPNGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMTTD-ESSIGT 124

Query: 124 LDYKKEERRALAIKSRE 140
           ++     +R  A KS+E
Sbjct: 125 MESTDSTKRKYAAKSKE 141

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P33296|UBC6_YEAST Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC6 PE=1 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 9/135 (6%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KR+ +E K M  NP    ++ P E+NI EW + I GP DT ++GG YHG +  P++YP
Sbjct: 6   AHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYP 65

Query: 72  FKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 123
           +KPP+  ++T        T++CLS+S++HP+ W P WSV T L  L++FM T+     GS
Sbjct: 66  YKPPAIRMITPNGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFM-TSDEATTGS 124

Query: 124 LDYKKEERRALAIKS 138
           +     +++ LA  S
Sbjct: 125 ITTSDHQKKTLARNS 139

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6CMG6|UBC6_KLULA Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=UBC6 PE=3 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/136 (40%), Positives = 83/136 (61%), Gaps = 9/136 (6%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KR+ +E K + +NP    ++ P E+NI EW + I GP  T +E G YHG +  P++YP
Sbjct: 6   ANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYP 65

Query: 72  FKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 123
           F PP+  ++T        T++CLS+S++HPE W P+WSV T L  L++FM T      GS
Sbjct: 66  FNPPAIRMITPNGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFM-TGDEQTTGS 124

Query: 124 LDYKKEERRALAIKSR 139
           +    +++R LA KS+
Sbjct: 125 VSTSDKDKRTLAKKSK 140

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q8N2K1|UB2J2_HUMAN Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3

 Score =  115 bits (287), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 9/135 (6%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A +R+ Q+   ++ +P     + PL  NI EW + +RGP  T +EGG YHG++  P E+P
Sbjct: 13  ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 72

Query: 72  FKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 123
           FKPPS  ++T        T++CLSI++ HP+ W P+WSV T L  L++FM       LGS
Sbjct: 73  FKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM-VEKGPTLGS 131

Query: 124 LDYKKEERRALAIKS 138
           ++     +R LA++S
Sbjct: 132 IETSDFTKRQLAVQS 146

Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum (ERAD).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6BYG4|UBC6_DEBHA Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=UBC6 PE=3 SV=2

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 80/135 (59%), Gaps = 9/135 (6%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KR+ +E K +  NP     + P +ENI EW + I GP  T FE G YHG ++ P+EYPFK
Sbjct: 8   KRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFK 67

Query: 74  PPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLD 125
           PPS  ++T        T++CLS+S++HP+ W P+WSV T L  L++FM T      GS+ 
Sbjct: 68  PPSISMITPNGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFM-TGDESTTGSIT 126

Query: 126 YKKEERRALAIKSRE 140
                ++ LA  S+E
Sbjct: 127 TSDNVKKRLARSSKE 141

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q2TA03|UB2J2_BOVIN Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus GN=UBE2J2 PE=2 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 9/135 (6%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A +R+ Q+   ++ +P     + PL  NI EW + +RGP  T +EGG YHG++  P E+P
Sbjct: 13  ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 72

Query: 72  FKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 123
           FKPPS  ++T        T++CLSI++ HP+ W P+WSV T L  L++FM       LGS
Sbjct: 73  FKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM-VEKGPTLGS 131

Query: 124 LDYKKEERRALAIKS 138
           ++     +R LA +S
Sbjct: 132 IETSDFTKRQLAAQS 146

Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum (ERAD).

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
224108707	308	predicted protein [Populus trichocarpa]	0.989	0.941	0.755	1e-128
255556356	309	non-canonical ubiquitin conjugating enzy	0.993	0.941	0.759	1e-127
224101573	310	predicted protein [Populus trichocarpa]	0.996	0.941	0.752	1e-127
147790480	297	hypothetical protein VITISV_020701 [Viti	0.972	0.959	0.754	1e-123
225431934	297	PREDICTED: ubiquitin-conjugating enzyme	0.972	0.959	0.750	1e-122
388522695	311	unknown [Lotus japonicus]	0.979	0.922	0.737	1e-122
449432914	297	PREDICTED: ubiquitin-conjugating enzyme	0.969	0.956	0.735	1e-120
356529168	308	PREDICTED: ubiquitin-conjugating enzyme	0.976	0.928	0.719	1e-117
357478955	307	Ubiquitin carrier protein E2 [Medicago t	0.976	0.931	0.721	1e-117
356556010	306	PREDICTED: ubiquitin-conjugating enzyme	0.969	0.928	0.729	1e-116

>gi|224108707|ref|XP_002314941.1| predicted protein [Populus trichocarpa] gi|222863981|gb|EEF01112.1| predicted protein [Populus trichocarpa]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/311 (75%), Positives = 258/311 (82%), Gaps = 21/311 (6%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MA D+YNLKNP+VKRILQEV+EMQS+PSDDFMSLPLEENIFEWQFAIRGPG+TEFEGGIY
Sbjct: 1   MAVDKYNLKNPSVKRILQEVREMQSSPSDDFMSLPLEENIFEWQFAIRGPGETEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAF 112
           HGRIQLPAEYPFKPPSFMLLT        TKICLSISNHHPEHWQPSWSVRTAL+ALIAF
Sbjct: 61  HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALLALIAF 120

Query: 113 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS 172
           MPT+PNGALGSLDYKKEERR LA+KSREAAP+FGTPERQKLIDEIH+YML KAP VPQ +
Sbjct: 121 MPTSPNGALGSLDYKKEERRVLAVKSREAAPRFGTPERQKLIDEIHQYMLGKAPSVPQQN 180

Query: 173 TC---EEQPGNREGEAQASSIDAMVTGAGEGLPAP-------VGDRIIEEVQEDLPASMN 222
           +    EE PGN EGEAQA   DA V  A E LP P       VG+R+IEEV E  P ++N
Sbjct: 181 SVQGSEEHPGNNEGEAQAQ--DAGVVAAAEELPNPAVGEIQEVGERVIEEVHE-APVNVN 237

Query: 223 PNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKS 282
           P+P     SRE+PA     QL  +P TRVQKPADDRLFTWAAVGLTIAI+VLLLKKFMKS
Sbjct: 238 PSPTGTSVSREIPARGPTDQLLQRPVTRVQKPADDRLFTWAAVGLTIAIVVLLLKKFMKS 297

Query: 283 NGHGTVFMDGS 293
           +G+G +FMDGS
Sbjct: 298 SGYGALFMDGS 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556356|ref|XP_002519212.1| non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis] gi|223541527|gb|EEF43076.1| non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/308 (75%), Positives = 253/308 (82%), Gaps = 17/308 (5%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNPAVKRILQEVKEMQSNPSDDFMS+PLEENIFEWQFAIRGP DTEFEGGIY
Sbjct: 1   MAEDKYNLKNPAVKRILQEVKEMQSNPSDDFMSMPLEENIFEWQFAIRGPCDTEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAF 112
           HGRIQLP+EYPFKPPSF+LLT        TKICLSISNHHPEHWQPSWSVRTALVALIAF
Sbjct: 61  HGRIQLPSEYPFKPPSFLLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120

Query: 113 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS 172
           MPTNPNGALGSLDYKKEERRALAIKSREAAP+FGTPERQKLIDEIH+YMLSKAPPVPQLS
Sbjct: 121 MPTNPNGALGSLDYKKEERRALAIKSREAAPRFGTPERQKLIDEIHQYMLSKAPPVPQLS 180

Query: 173 ---TCEEQPGNREGEAQA-----SSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPN 224
                EE    +E EA A      ++ A +          VGDRI+EEV E  P ++NP 
Sbjct: 181 PSQDSEEHHTGKEDEAHAILQEQGAVAANLPNLAVSEQLAVGDRIVEEVPE-APVNVNPG 239

Query: 225 PVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNG 284
                TS E+PA AS  QL  +PETRVQ+PADDRLFTWAAVGLTIAI+VLLLKKF+KS+G
Sbjct: 240 ATGVRTSTEIPARASSDQLLHRPETRVQRPADDRLFTWAAVGLTIAIVVLLLKKFLKSSG 299

Query: 285 HGTVFMDG 292
           HG VFMDG
Sbjct: 300 HGAVFMDG 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101573|ref|XP_002312335.1| predicted protein [Populus trichocarpa] gi|222852155|gb|EEE89702.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/311 (75%), Positives = 250/311 (80%), Gaps = 19/311 (6%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPG+TEFEGGIY
Sbjct: 1   MAEDKYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGETEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAF 112
           HGRIQLPAEYPFKPPSFMLLT        TKICLSISNHHPEHWQPSWSVRTALVALIAF
Sbjct: 61  HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120

Query: 113 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS 172
           MPT+PNGALGSLDYKKEERR LA+KSREAAP+FGTPERQKLIDEIH+YMLSKAP VPQ +
Sbjct: 121 MPTSPNGALGSLDYKKEERRVLAVKSREAAPRFGTPERQKLIDEIHQYMLSKAPSVPQQN 180

Query: 173 ---TCEEQPGNREGEAQASSIDAMVTGAGEGLPAP-------VGDRIIEEVQEDLPASMN 222
                EE P N   E Q SS DA    A E LP P       VG+R+ E+V E    + N
Sbjct: 181 PAQGSEEHPNNSVCETQESSPDAEAVTAAEDLPNPAVGEIQEVGERVFEQVHE-AHITAN 239

Query: 223 PNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKS 282
           P+P     SREVPA  S  QL  +  TRVQKPADDRLFTWAAVGL IAI+VLLLKKFMKS
Sbjct: 240 PSPAGTSASREVPAKCSSDQLLQRQVTRVQKPADDRLFTWAAVGLAIAIVVLLLKKFMKS 299

Query: 283 NGHGTVFMDGS 293
           +G+G  FMDGS
Sbjct: 300 SGYGAFFMDGS 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790480|emb|CAN72172.1| hypothetical protein VITISV_020701 [Vitis vinifera]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/305 (75%), Positives = 249/305 (81%), Gaps = 20/305 (6%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNP VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGP DTEFEGGIY
Sbjct: 1   MAEDKYNLKNPGVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPSDTEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAF 112
           HGRIQLPAEYPF+PPSFMLLT        TKICLSISNHHPEHWQPSWSVRTALVALIAF
Sbjct: 61  HGRIQLPAEYPFQPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120

Query: 113 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS 172
           MPT+PNGALGSLDYKKEER ALAIKSREAAPKFGTPERQKLIDEIHEYMLSK+PPVPQL+
Sbjct: 121 MPTSPNGALGSLDYKKEERHALAIKSREAAPKFGTPERQKLIDEIHEYMLSKSPPVPQLN 180

Query: 173 TC---EEQPGNREGEAQASSIDAMVTGAGEGLPAP-VGDRIIEEVQEDLPASMNPNPVVA 228
           +    EE   NREGE Q +  +     A + L  P V DRI+EE    +P + NP+PV  
Sbjct: 181 SSQAPEEPSTNREGEGQTNPPNGSAIAAADELSDPRVADRIVEEEPPQVPLNANPSPV-- 238

Query: 229 GTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTV 288
             SR+    AS V+L  KP  RVQ+ ADDRL TWAAVGLTIAI+VLLLKKF+KS+GHG V
Sbjct: 239 --SRQ----ASAVRLLQKPVPRVQRQADDRLLTWAAVGLTIAIMVLLLKKFLKSSGHGAV 292

Query: 289 FMDGS 293
           FMD S
Sbjct: 293 FMDES 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431934|ref|XP_002277394.1| PREDICTED: ubiquitin-conjugating enzyme E2 32 [Vitis vinifera] gi|296083258|emb|CBI22894.3| unnamed protein product [Vitis vinifera]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/305 (75%), Positives = 248/305 (81%), Gaps = 20/305 (6%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNP VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGP DTEFEGGIY
Sbjct: 1   MAEDKYNLKNPGVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPSDTEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAF 112
           HGRIQLPAEYPF+PPSFMLLT        TKICLSISNHHPEHWQPSWSVRTALVALIAF
Sbjct: 61  HGRIQLPAEYPFQPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120

Query: 113 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS 172
           MPT+PNGALGSLDYKKEER ALAIKSREAAPKFGTPERQKLIDEIHEYMLSK+PPVPQL+
Sbjct: 121 MPTSPNGALGSLDYKKEERHALAIKSREAAPKFGTPERQKLIDEIHEYMLSKSPPVPQLN 180

Query: 173 TC---EEQPGNREGEAQASSIDAMVTGAGEGLPAP-VGDRIIEEVQEDLPASMNPNPVVA 228
           +    EE   NREGE Q +  +     A + L  P V DRI+EE    +P + NP+PV  
Sbjct: 181 SSQAPEEPSTNREGEGQTNPPNGSAIAAADELSDPRVADRIVEEEPPQVPLNANPSPV-- 238

Query: 229 GTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTV 288
             SR+    AS  +L  KP  RVQ+ ADDRL TWAAVGLTIAI+VLLLKKF+KS+GHG V
Sbjct: 239 --SRQ----ASAARLLQKPMPRVQRQADDRLLTWAAVGLTIAIMVLLLKKFLKSSGHGAV 292

Query: 289 FMDGS 293
           FMD S
Sbjct: 293 FMDES 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522695|gb|AFK49409.1| unknown [Lotus japonicus]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/312 (73%), Positives = 249/312 (79%), Gaps = 25/312 (8%)

Query: 4   DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           D+YN+KNPAVKRILQEVKEMQSNPSDDFM+LPLEENIFEWQFAIRGPGDTEFEGGI+HGR
Sbjct: 3   DKYNMKNPAVKRILQEVKEMQSNPSDDFMNLPLEENIFEWQFAIRGPGDTEFEGGIFHGR 62

Query: 64  IQLPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 115
           IQLPAEYPFKPPSFMLLT        TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT
Sbjct: 63  IQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 122

Query: 116 NPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS--- 172
           NPNGALGSLDYKKEERRALAIKSREA+PKFGTPERQ+LIDEIHEYMLSKAPPVPQ+S   
Sbjct: 123 NPNGALGSLDYKKEERRALAIKSREASPKFGTPERQRLIDEIHEYMLSKAPPVPQVSPTQ 182

Query: 173 TCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSR 232
             EEQP   E + Q    +     AGE +P    DRIIEE  +++  + NPNP     S 
Sbjct: 183 ASEEQPPIEEDQTQVQLHNPEALPAGEVIPDQSVDRIIEE--QEVTVNANPNPSEVEAST 240

Query: 233 EVPAN--ASGVQLQP---------KPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMK 281
           E P+N  +S   LQ          KPETRVQKP DDRLFTWAA+GLTIAI+VLLLKKF+K
Sbjct: 241 ETPSNVVSSNQLLQNSETTRGQNLKPETRVQKP-DDRLFTWAAIGLTIAIVVLLLKKFIK 299

Query: 282 SNGHGTVFMDGS 293
           S  HG VFMDGS
Sbjct: 300 STEHGAVFMDGS 311

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432914|ref|XP_004134243.1| PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Cucumis sativus] gi|449503860|ref|XP_004162210.1| PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Cucumis sativus]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/306 (73%), Positives = 248/306 (81%), Gaps = 22/306 (7%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNPAVKRILQEVKEMQ+NPSDDFMSLPLEENIFEWQFAIRGPGD+EFEGGIY
Sbjct: 1   MAEDKYNLKNPAVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDSEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAF 112
           HGRIQLPAEYPFKPPSFMLLT        TKICLSISNHHPEHWQPSWSVRTALVALIAF
Sbjct: 61  HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120

Query: 113 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS 172
           MPTNPNGALGSLDYKKEERR LAIKSREA PKFGTPERQKLIDEIHEYMLSKAPPVPQ  
Sbjct: 121 MPTNPNGALGSLDYKKEERRVLAIKSREAPPKFGTPERQKLIDEIHEYMLSKAPPVPQSG 180

Query: 173 TCE---EQPGNREGEAQASSIDAMVTGAGEGLP-APVGDRIIEEVQEDLPASMNPNPVVA 228
           + +   E+P N E + Q +S  A +  A E L  +P  +RI+EE   ++       P VA
Sbjct: 181 STDVSGEKPTNEEADVQVTSETAELAAAVEELQNSPTINRIVEEAVPEV------QPEVA 234

Query: 229 GTSREVPANASGVQL-QPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGT 287
              R  P++    Q  Q +PETRV KPADDRLFTWAA+GLT+AI+VLLLKKFMK++ HG+
Sbjct: 235 ---RVAPSSRPTTQTEQGRPETRVHKPADDRLFTWAAIGLTLAIVVLLLKKFMKASAHGS 291

Query: 288 VFMDGS 293
           VFMD S
Sbjct: 292 VFMDES 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529168|ref|XP_003533168.1| PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Glycine max]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/310 (71%), Positives = 241/310 (77%), Gaps = 24/310 (7%)

Query: 4   DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           D+YNLKNPAVKRILQE+KEM SNPSDDFMSLPLEENIFEWQFAIRGP DTEFEGGIYHGR
Sbjct: 3   DKYNLKNPAVKRILQELKEMNSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGR 62

Query: 64  IQLPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 115
           IQLP+EYPFKPPSFMLLT        TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT
Sbjct: 63  IQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 122

Query: 116 NPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS--- 172
           NPNGALGSLDYKKEERR LA+KSREA PKFGTPERQKLIDEIHEYM+SKAPPVPQ S   
Sbjct: 123 NPNGALGSLDYKKEERRTLAVKSREAPPKFGTPERQKLIDEIHEYMVSKAPPVPQPSASE 182

Query: 173 TCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSR 232
             EE P N E E  A+S++     AGE +     D I+EE +E L    N NP     SR
Sbjct: 183 ASEENPRNEEAETHANSLNPESLTAGEVILDQEVDGIVEEQEEVL---ANANPAGVEASR 239

Query: 233 EVPANASGVQL---------QPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSN 283
           EV  + S  ++          PKPETRVQKP DDRLFT AA+GLTIAI+VLLLKKF+KS 
Sbjct: 240 EVQPSVSRYEVLQKSDTRVQNPKPETRVQKP-DDRLFTLAAIGLTIAIVVLLLKKFIKST 298

Query: 284 GHGTVFMDGS 293
            HG +F DGS
Sbjct: 299 QHGALFSDGS 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478955|ref|XP_003609763.1| Ubiquitin carrier protein E2 [Medicago truncatula] gi|355510818|gb|AES91960.1| Ubiquitin carrier protein E2 [Medicago truncatula]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/309 (72%), Positives = 243/309 (78%), Gaps = 23/309 (7%)

Query: 4   DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           D+YN+KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGP +TEFEGGIYHGR
Sbjct: 3   DKYNMKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPRETEFEGGIYHGR 62

Query: 64  IQLPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 115
           IQLPAEYPFKPPSFMLLT        TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT
Sbjct: 63  IQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 122

Query: 116 NPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCE 175
           NPNGALGSLDYKKE+RRALAIKSREA+PKFGTPERQKLIDEIHEYMLS A  VPQ S  +
Sbjct: 123 NPNGALGSLDYKKEDRRALAIKSREASPKFGTPERQKLIDEIHEYMLSMAAVVPQPSPLQ 182

Query: 176 --EQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSRE 233
             E+P N E E Q +  +     AGEG+P   GD I+EE  +++  + NPNP     S E
Sbjct: 183 ASEEPKNEEAETQVTQ-NPEAPPAGEGIPDQAGDGIVEE--QEVNVNANPNPAGVEASNE 239

Query: 234 VPANASGVQL---------QPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNG 284
            P+  S  QL           KPETRVQKP DDRLFT AA+GL IAI+VLLLKKF+KS  
Sbjct: 240 TPSGVSTNQLPRKSDTRVQNLKPETRVQKP-DDRLFTLAAIGLAIAIMVLLLKKFIKSTE 298

Query: 285 HGTVFMDGS 293
           HG VFM+GS
Sbjct: 299 HGAVFMNGS 307

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556010|ref|XP_003546320.1| PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Glycine max]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/310 (72%), Positives = 240/310 (77%), Gaps = 26/310 (8%)

Query: 4   DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           D+YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGP DTEFEGGIYHGR
Sbjct: 3   DKYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGR 62

Query: 64  IQLPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 115
           IQLP+EYPFKPPSFMLLT        TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT
Sbjct: 63  IQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 122

Query: 116 NPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTC- 174
           NPNGALGSLDYKKEER  LAIKSREA PKFGTPERQKLIDEIHEYMLSKAPPVPQ S   
Sbjct: 123 NPNGALGSLDYKKEERHTLAIKSREAPPKFGTPERQKLIDEIHEYMLSKAPPVPQPSATE 182

Query: 175 --EEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSR 232
             EE P N E E Q +S +     AGEG+     D I+EE QE + A    NP     SR
Sbjct: 183 ASEENPRNEEAETQVNSPNPESLPAGEGITDQEVDGIVEE-QEVILA----NPAGVEVSR 237

Query: 233 EVPANASGVQL---------QPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSN 283
           EV  + S  ++          PKPETRVQK  DDRLFT AA+GLTIAI+VLLLKKF+KS 
Sbjct: 238 EVQPSVSRNEVLQKSDTRAQNPKPETRVQK-HDDRLFTLAAIGLTIAIVVLLLKKFLKST 296

Query: 284 GHGTVFMDGS 293
            HG +F DGS
Sbjct: 297 QHGALFSDGS 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2086067	309	UBC32 "AT3G17000" [Arabidopsis	0.993	0.941	0.663	3.5e-98
UNIPROTKB|F1ND91	317	UBE2J1 "Uncharacterized protei	0.843	0.779	0.432	3.7e-48
MGI|MGI:1926245	318	Ube2j1 "ubiquitin-conjugating	0.832	0.767	0.419	5.4e-47
UNIPROTKB|Q9Y385	318	UBE2J1 "Ubiquitin-conjugating	0.467	0.430	0.616	1.4e-46
UNIPROTKB|F1S0C9	318	UBE2J1 "Uncharacterized protei	0.467	0.430	0.616	1.4e-46
RGD|1305067	248	Ube2j1 "ubiquitin-conjugating	0.467	0.552	0.616	1.4e-46
ZFIN|ZDB-GENE-040426-2853	314	ube2j1 "ubiquitin-conjugating	0.822	0.767	0.413	4.8e-46
DICTYBASE|DDB_G0281369	401	DDB_G0281369 "Ubiquitin-conjug	0.460	0.336	0.587	2.4e-44
UNIPROTKB|F1MBQ2	318	UBE2J1 "Uncharacterized protei	0.825	0.761	0.4	1.3e-43
UNIPROTKB|E2R4Q6	317	UBE2J1 "Uncharacterized protei	0.436	0.403	0.605	1.9e-42

TAIR|locus:2086067 UBC32 "AT3G17000" [Arabidopsis thaliana (taxid:3702)]

 Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
 Identities = 203/306 (66%), Positives = 229/306 (74%)

Query:     1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
             MA++RYN KNPAVKRILQEVKEMQ+NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY
Sbjct:     1 MADERYNRKNPAVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60

Query:    61 HGRIQLPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAF 112
             HGRIQLPA+YPFKPPSFMLLT        TKICLSISN+HPEHWQPSWSVRTALVALIAF
Sbjct:    61 HGRIQLPADYPFKPPSFMLLTPNGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAF 120

Query:   113 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQ-L 171
             MPT+PNGALGS+DY K+ERR LAIKSRE  PK+G+PERQK+IDEIH+Y+LSKA  VP+ L
Sbjct:   121 MPTSPNGALGSVDYPKDERRTLAIKSRETPPKYGSPERQKIIDEIHQYILSKATVVPKPL 180

Query:   172 ST-CEEQPGN-REGEAQASSIDAMVTGAGEGLPAP---VGDRIIEEVQEDLPASMNPNPV 226
                C + P    E  +Q    +A+       +      V D+IIEE  E +  + +  P 
Sbjct:   181 PLECSQAPSIVSEAHSQVEPQEAITVVEERSIATTDTIVDDQIIEETAEAVNTAASVVPA 240

Query:   227 VAGTSR-EVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGH 285
              A     EV   AS    Q       QKP DDRLFTWAAVGLTIAI+VLLLKKF+KSNG+
Sbjct:   241 AAPLPAVEVVVKASVSGEQRMARRAAQKPVDDRLFTWAAVGLTIAIMVLLLKKFIKSNGY 300

Query:   286 GTVFMD 291
              T FMD
Sbjct:   301 STGFMD 306

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0006301 "postreplication repair" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|F1ND91 UBE2J1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 115/266 (43%), Positives = 156/266 (58%)

Query:     3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
             E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GGIYHG
Sbjct:     2 EARYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGIYHG 60

Query:    63 RIQLPAEYPFKPPSFMLLTT--------KICLSISNHHPEHWQPSWSVRTALVALIAFMP 114
             RI LP EYP KPPS +LLT         KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct:    61 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP 120

Query:   115 TNPNGALGSLDYKKEERRALAIKSREAAPKF-GTPERQKLIDEIHEYMLSKAPP-----V 168
             T   GA+GSLDY  EERRALA KS++   +  GT  +  L+        S+A        
Sbjct:   121 TKGEGAIGSLDYTPEERRALAKKSQDFCCEMCGTSMKTALLPLTSGSGSSQADKEAKELA 180

Query:   169 PQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVA 228
              Q+S   E   +R+ EA+ S+   +   A    P P  D   +  +    A     P   
Sbjct:   181 RQISFKAEVHSSRKSEAEPSNSAGLNCSATS--PEPQQDGATQAFRGPASAMSEAQPSST 238

Query:   229 GTSRE-VPANASGVQLQPKPETRVQK 253
                +E  P+  +   L P+ + R Q+
Sbjct:   239 APGQERAPSVPTNTSLSPR-QRRAQQ 263

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

MGI|MGI:1926245 Ube2j1 "ubiquitin-conjugating enzyme E2J 1" [Mus musculus (taxid:10090)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 112/267 (41%), Positives = 155/267 (58%)

Query:     3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
             E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHG
Sbjct:     2 ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG 60

Query:    63 RIQLPAEYPFKPPSFMLLTT--------KICLSISNHHPEHWQPSWSVRTALVALIAFMP 114
             RI LP EYP KPPS +LLT         KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct:    61 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP 120

Query:   115 TNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTC 174
             T   GA+GSLDY  EERRALA KS++   + G     K      + +L    P+   S  
Sbjct:   121 TKGEGAIGSLDYTPEERRALAKKSQDFCCE-GCGSAMK------DVLL----PLKSGSGS 169

Query:   175 EEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRI--IEEVQEDLPASMNPNPVVAGTSR 232
              +     +  A+  S  A V  +G+ +     ++   + + Q+DLP +            
Sbjct:   170 SQADQEAKELARQISFKAEVNSSGKTIAESDLNQCFSLNDSQDDLPTTFQGATASTSYGA 229

Query:   233 EVPANASGVQ-LQPKPETRVQKPADDR 258
             + P+ A   Q  QP P+     P   R
Sbjct:   230 QNPSGAPLPQPTQPAPKNTSMSPRQRR 256

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

UNIPROTKB|Q9Y385 UBE2J1 "Ubiquitin-conjugating enzyme E2 J1" [Homo sapiens (taxid:9606)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 90/146 (61%), Positives = 114/146 (78%)

Query:     3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
             E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHG
Sbjct:     2 ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG 60

Query:    63 RIQLPAEYPFKPPSFMLLTT--------KICLSISNHHPEHWQPSWSVRTALVALIAFMP 114
             RI LP EYP KPPS +LLT         KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct:    61 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP 120

Query:   115 TNPNGALGSLDYKKEERRALAIKSRE 140
             T   GA+GSLDY  EERRALA KS++
Sbjct:   121 TKGEGAIGSLDYTPEERRALAKKSQD 146

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IMP

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

UNIPROTKB|F1S0C9 UBE2J1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 90/146 (61%), Positives = 114/146 (78%)

Query:     3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
             E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHG
Sbjct:     2 ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG 60

Query:    63 RIQLPAEYPFKPPSFMLLTT--------KICLSISNHHPEHWQPSWSVRTALVALIAFMP 114
             RI LP EYP KPPS +LLT         KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct:    61 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP 120

Query:   115 TNPNGALGSLDYKKEERRALAIKSRE 140
             T   GA+GSLDY  EERRALA KS++
Sbjct:   121 TKGEGAIGSLDYTPEERRALAKKSQD 146

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

RGD|1305067 Ube2j1 "ubiquitin-conjugating enzyme E2, J1" [Rattus norvegicus (taxid:10116)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 90/146 (61%), Positives = 114/146 (78%)

Query:     3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
             E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHG
Sbjct:     2 ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG 60

Query:    63 RIQLPAEYPFKPPSFMLLTT--------KICLSISNHHPEHWQPSWSVRTALVALIAFMP 114
             RI LP EYP KPPS +LLT         KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct:    61 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP 120

Query:   115 TNPNGALGSLDYKKEERRALAIKSRE 140
             T   GA+GSLDY  EERRALA KS++
Sbjct:   121 TKGEGAIGSLDYTPEERRALAKKSQD 146

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2853 ube2j1 "ubiquitin-conjugating enzyme E2, J1" [Danio rerio (taxid:7955)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 107/259 (41%), Positives = 151/259 (58%)

Query:     3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
             E +YNLK+PAVKR+++E  E++ +P++ + + PLE+N+FEW F++RGP D++F+GG+YHG
Sbjct:     2 ESKYNLKSPAVKRLMKEAAELR-DPTEHYHAQPLEDNLFEWHFSVRGPPDSDFDGGVYHG 60

Query:    63 RIQLPAEYPFKPPSFMLLTT--------KICLSISNHHPEHWQPSWSVRTALVALIAFMP 114
             RI LP EYP KPPS +LLT         KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct:    61 RIVLPPEYPMKPPSIILLTPNGRFEVGKKICLSISGHHPETWQPSWSIRTALIAIIGFMP 120

Query:   115 TNPNGALGSLDYKKEERRALAIKSRE-AAPKFGTPERQKLIDEIHEYMLSKAPP--VPQL 171
             T   GA+GSLDY  EER+ALA KS++       +  R  L+    +  L  A P  + Q 
Sbjct:   121 TKGEGAIGSLDYTPEERKALAKKSQDFCCEACSSCMRSALLPLSPDSDLRPADPQRLAQQ 180

Query:   172 STCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTS 231
                + +  +   ++ +SS  A    +     +   D+  E+           + V   TS
Sbjct:   181 INFKAESSSSAADSSSSSSAAAEVFSNTSESSETADQDTEDTSA--AEQTESSSVAPQTS 238

Query:   232 REVPANASGVQLQPKPETR 250
              E P+    V   P P  R
Sbjct:   239 AEDPS----VSAAPSPRQR 253

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0281369 DDB_G0281369 "Ubiquitin-conjugating enzyme E2 J1" [Dictyostelium discoideum (taxid:44689)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 84/143 (58%), Positives = 110/143 (76%)

Query:     4 DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
             D  N  NPAVKRIL+E++E++++ + D+ + PLE+NIFEW F IRGP D++F GGIYHGR
Sbjct:     2 DSCNPNNPAVKRILREIQELRNDTNPDYKAFPLEDNIFEWHFTIRGPQDSDFNGGIYHGR 61

Query:    64 IQLPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 115
             I LP+EYPFKPP+ +LLT         KICL++S HHPEHWQPSWS+RT LVALI FMPT
Sbjct:    62 IILPSEYPFKPPNIVLLTPNGRFETNVKICLTVSAHHPEHWQPSWSIRTVLVALIGFMPT 121

Query:   116 NPNGALGSLDYKKEERRALAIKS 138
                GA+G++D   ++R+ LA+KS
Sbjct:   122 EGKGAIGAIDLPTKDRKELALKS 144

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|F1MBQ2 UBE2J1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 106/265 (40%), Positives = 155/265 (58%)

Query:     5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRI 64
             RY +++ +VKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHGRI
Sbjct:     4 RYLIRSVSVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRI 62

Query:    65 QLPAEYPFKPPSFMLLTT--------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTN 116
              LP EYP KPPS +LLT         KICLSIS HHPE WQPSWS+RTAL+A+I FMPT 
Sbjct:    63 VLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTK 122

Query:   117 PNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCEE 176
               GA+GSLDY  EERRALA KS++   + G     K      + +L    P+   S   +
Sbjct:   123 GEGAIGSLDYTPEERRALAKKSQDFCCE-GCGFAMK------DILL----PLKSGSDSSQ 171

Query:   177 QPGNREGEAQASSIDAMVTGAGEGLP-APVGDRI-IEEVQEDLPASMNPNPVVAGTSREV 234
                  +  A+  S  A V  +G+ +  + +     + ++Q+D+PA+            + 
Sbjct:   172 ADQEAKELARQISFKAEVNSSGKTIAESDLNHSFSLNDLQDDIPATFQGATASTSYGTQN 231

Query:   235 PANASGVQ-LQPKPETRVQKPADDR 258
             P+ AS  Q  QP  ++    P   R
Sbjct:   232 PSAASLQQPAQPVAKSTSMSPRQRR 256

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|E2R4Q6 UBE2J1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 83/137 (60%), Positives = 106/137 (77%)

Query:    12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
             AVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHGRI LP EYP
Sbjct:    10 AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYP 68

Query:    72 FKPPSFMLLTT--------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 123
              KPPS +LLT         KICLSIS HHPE WQPSWS+RTAL+A+I FMPT   GA+GS
Sbjct:    69 MKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGS 128

Query:   124 LDYKKEERRALAIKSRE 140
             LDY  EERRALA KS++
Sbjct:   129 LDYTPEERRALAKKSQD 145

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LSP7	UBC32_ARATH	6, ., 3, ., 2, ., 1, 9	0.6516	0.9795	0.9288	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.991
3rd Layer	6.3.2	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	3e-40
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	4e-29
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	2e-28
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	5e-27
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	1e-15
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	2e-10

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  136 bits (345), Expect = 3e-40
 Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 17/138 (12%)

Query: 13  VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
            KR+ +E+K+++ +P     + P+EEN+ EW   IRGP DT +EGGI+   I+ P +YPF
Sbjct: 1   SKRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPF 60

Query: 73  KPPSFMLLT----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALG 122
           KPP    +T           KICLSI   H   W P++++RT L++L + +   PN +  
Sbjct: 61  KPPKVRFVTKIYHPNVDENGKICLSILKTH--GWSPAYTLRTVLLSLQSLL-NEPNPSDP 117

Query: 123 SLDYKKEERRALAIKSRE 140
                  E   L  ++RE
Sbjct: 118 L----NAEAAKLYKENRE 131

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  107 bits (270), Expect = 4e-29
 Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 15/115 (13%)

Query: 15  RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKP 74
           R+ +E+KE+  +P     + P+++N+FEW+  I GP  T +EGG++   I+ P +YPFKP
Sbjct: 1   RLQKELKELLKDPPPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKP 60

Query: 75  PSFMLLTTKI-----------CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           P  +  TTKI           CL I     E+W P+ ++   L+++ + + + PN
Sbjct: 61  PK-VKFTTKIYHPNVDPSGEICLDIL--KDENWSPALTIEQVLLSIQSLL-SEPN 111

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  106 bits (266), Expect = 2e-28
 Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 15/121 (12%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
            A+KR+L+E+K++Q +P     + P+++ N+F W+  I GP DT +EGGI+   ++ P +
Sbjct: 5   SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPED 64

Query: 70  YPFKPPSFMLLT----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNG 119
           YPFKPP     T            +CL I     + W P +++ T L++L + +  +PN 
Sbjct: 65  YPFKPPKVRFTTKIFHPNVDPSGNVCLDILK---DRWSPVYTLETILLSLQSLL-LSPNP 120

Query: 120 A 120
            
Sbjct: 121 D 121

Length = 153

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  102 bits (256), Expect = 5e-27
 Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 14/115 (12%)

Query: 15  RILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           R+L+E+KE++ +P   F + P+ +EN+ EW   I GP  T +EGG++   I+ P +YPFK
Sbjct: 1   RLLKELKELRKDPPPGFTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFK 60

Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           PP    +T           +ICL I     E W P+ ++ T L++L + + + PN
Sbjct: 61  PPKVKFITKIYHPNVDSSGEICLDI--LKQEKWSPALTLETVLLSLQSLL-SEPN 112

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 72.1 bits (176), Expect = 1e-15
 Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 14/117 (11%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KRI +E K++  +P  +  + P +EN+F W  +I GP D+ + GG++   I  P +YP
Sbjct: 2   ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYP 61

Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I     + W P+ +V   L+++ + + T+PN
Sbjct: 62  FKPPKVQFTTKIYHPNINSNGSICLDILR---DQWSPALTVSKVLLSISSLL-TDPN 114

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 13/110 (11%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI +E + + ++P     + P   N   ++  + GP  T +EGG Y   + LP +YP +
Sbjct: 5   KRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPME 64

Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM 113
           PP    LT           +ICL I     + W P+  +RT L+++ A +
Sbjct: 65  PPKVRFLTKIYHPNIDKLGRICLDILK---DKWSPALQIRTVLLSIQALL 111

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	99.98
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	99.98
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	99.98
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	99.97
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	99.97
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.96
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	99.94
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	99.93
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	99.91
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	99.9
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.88
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.6
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.58
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.45
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.03
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	97.99
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	97.31
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	97.22
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	96.79
KOG3357	167	consensus Uncharacterized conserved protein [Funct	95.64
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	95.18
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	94.89
smart00591	107	RWD domain in RING finger and WD repeat containing	94.47
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	90.15

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.1e-50  Score=358.32  Aligned_cols=289  Identities=44%  Similarity=0.672  Sum_probs=238.1

Q ss_pred             CCCcCCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus         1 ma~~~~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      |++.+||..|++.|||+||.++|+ +|...+.+.|.++|+|+|+++|+||.||-||||+||.+|.||.|||++||.+.++
T Consensus         1 ~m~erYN~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLL   79 (314)
T KOG0428|consen    1 MMEERYNLKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILL   79 (314)
T ss_pred             CchhhhcccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEE
Confidence            777899999999999999999999 7888999999999999999999999999999999999999999999999999999


Q ss_pred             c--------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCCCCCChHHHHHHHHHhHHHHHHHHHHHHhh-hCChhHH
Q 022719           81 T--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPK-FGTPERQ  151 (293)
Q Consensus        81 T--------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~~P~~~l~A~~~~~~dre~f~~kare~~~k-ya~~~~~  151 (293)
                      |        .+|||+|.++||+.|.|+|+|++.|+.|+.+|...|+.++++++|-.++|+.+++++++|.+| |++.-++
T Consensus        80 TpNGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~GAlGSlDYpp~ERr~LAkkS~e~~ck~cGs~mk~  159 (314)
T KOG0428|consen   80 TPNGRFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPEGALGSLDYPPEERRALAKKSQEFCCKGCGSAMKD  159 (314)
T ss_pred             cCCCceeeCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCCCccccCcCCHHHHHHHHHhhcccCccccCChhhh
Confidence            9        689999999999999999999999999999999999999999999999999999999999988 8888888


Q ss_pred             HHH----H-HHHHHHhcCCCCCCCCCCCCC---CCCCCccccccccccccccccCCCCCCC--ccccccccccc-ccccc
Q 022719          152 KLI----D-EIHEYMLSKAPPVPQLSTCEE---QPGNREGEAQASSIDAMVTGAGEGLPAP--VGDRIIEEVQE-DLPAS  220 (293)
Q Consensus       152 ~l~----~-e~~~~~~~~~~~vp~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~  220 (293)
                      .++    + ++|++...+...++-....|.   ....+++..++++..++.....++.+++  ..+.-.++.+| ..+|+
T Consensus       160 ~llp~~~d~~~~Q~~eaK~la~q~~f~~E~~~~~k~vsea~~q~~p~et~~~~e~~s~~T~~~~~~~~~a~~~e~~~~Vn  239 (314)
T KOG0428|consen  160 VLLPLKSDSDSSQAQEAKELARQISFKAEVNSSGKTVSEADLQHSPSETDLQDEIASASTSYGLQNSSAASFHEPTQPVN  239 (314)
T ss_pred             eeeeccCCchHHHHHHHHHHhhcCcchhhhccccchhhhhhccCCcccccchhhhhcccccccccchhhhhhcCCCcccc
Confidence            887    4 899998888888887777443   3346667778888877777766776653  22222223221 44556


Q ss_pred             cCCCCCCCC---CCcccCCCCccccCCCCCccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccccC
Q 022719          221 MNPNPVVAG---TSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDG  292 (293)
Q Consensus       221 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  292 (293)
                      .|.+...++   .++.+...++..-+|+...+..+++-|+  +||+++||||||++|++|||.++|||-.-|||.
T Consensus       240 ~n~S~vP~~~aqpavq~~~~~sp~v~Q~hapR~a~t~~d~--~t~l~viltiAl~~lif~~~~lan~y~~dfmd~  312 (314)
T KOG0428|consen  240 KNTSMVPQRRAQPAVQRRLSTSPDVIQGHAPRDAHTDHDG--STVLIVILTIALAALIFRRIYLANEYIFDFMDF  312 (314)
T ss_pred             cccccCchhcccccccceecCCchhhhccCcccccCCCCC--ceehHHHHHHHHHHHHHHHHHHhccceeccccc
Confidence            655544422   1222223344334444444667778776  999999999999999999999999999999974

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.8e-39  Score=269.76  Aligned_cols=133  Identities=32%  Similarity=0.709  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------
Q 022719           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------   81 (293)
Q Consensus        12 a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------   81 (293)
                      +.+||.+|+++|++++++|+.+.+.++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|+|          
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~   81 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN   81 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence            4579999999999999999999999999999999999999999999999999999999999999999999          


Q ss_pred             ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                      |+||+|||+   +.|+|+++|+.||.+|++||.+ ||++++.  .+..|+.|+.+|.+.||+|+++|+.
T Consensus        82 G~IclDILk---~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~  147 (148)
T KOG0417|consen   82 GRICLDILK---DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM  147 (148)
T ss_pred             ccchHHhhh---ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            999999998   7899999999999999999976 8888876  3677789999999999999999985

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-38  Score=271.10  Aligned_cols=136  Identities=33%  Similarity=0.747  Sum_probs=127.0

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec------
Q 022719            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT------   81 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~~gi~~~p~~~-di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T------   81 (293)
                      +..+.+||++|++.|++++++++.+.|..+ |+++|+++|.||.+||||||+|++.|.||++||++||+|+|+|      
T Consensus         3 s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPN   82 (153)
T COG5078           3 SPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPN   82 (153)
T ss_pred             chhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCC
Confidence            444999999999999999999999999988 9999999999999999999999999999999999999999999      


Q ss_pred             ----ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 ----TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 ----G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                          |+|||+||+   ++|+|+++|++||++|++||.+ |++++++  |+.++.+|+++|.++||+++++|+.
T Consensus        83 V~~~G~vCLdIL~---~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~  152 (153)
T COG5078          83 VDPSGNVCLDILK---DRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE  152 (153)
T ss_pred             cCCCCCChhHHHh---CCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence                999999998   8999999999999999999976 6667665  5677789999999999999999864

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=1.7e-35  Score=253.74  Aligned_cols=134  Identities=30%  Similarity=0.592  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------
Q 022719           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------   81 (293)
Q Consensus        12 a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------   81 (293)
                      +.|||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|+|          
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~   82 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL   82 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999          


Q ss_pred             ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719           82 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  148 (293)
Q Consensus        82 G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~  148 (293)
                      |.||+++|+   +.|+|++||++||.+|++||.+ +|+++++  ++.+|.+|++.|.++||+|+++|+..
T Consensus        83 G~iCl~iL~---~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~  149 (152)
T PTZ00390         83 GRICLDILK---DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH  149 (152)
T ss_pred             CeEECccCc---ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence            999999997   8899999999999999999965 7777776  57778899999999999999999863

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=3.3e-35  Score=250.66  Aligned_cols=132  Identities=33%  Similarity=0.682  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------
Q 022719           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------   81 (293)
Q Consensus        12 a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------   81 (293)
                      +.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|          
T Consensus         2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~   81 (147)
T PLN00172          2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN   81 (147)
T ss_pred             hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence            4699999999999999999999999999999999999999999999999999999999999999999999          


Q ss_pred             ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhC
Q 022719           82 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  146 (293)
Q Consensus        82 G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya  146 (293)
                      |.||+++|+   +.|+|+++|++||.+|++||.+ +++++++  ++.++.+|+++|.++||+|+++|+
T Consensus        82 G~iCl~il~---~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a  146 (147)
T PLN00172         82 GSICLDILR---DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA  146 (147)
T ss_pred             CEEEcccCc---CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            999999997   7899999999999999999965 6677766  468888999999999999999986

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-35  Score=242.29  Aligned_cols=134  Identities=31%  Similarity=0.683  Sum_probs=125.9

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec------
Q 022719            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT------   81 (293)
Q Consensus         8 ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T------   81 (293)
                      ||-+|.|||++|++.|+++++.||+..|.++|++.|.+.|+||.+|||+||+|++.|.|+++||.+||.|+|++      
T Consensus         1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN   80 (152)
T KOG0419|consen    1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN   80 (152)
T ss_pred             CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             ----ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhh
Q 022719           82 ----TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  144 (293)
Q Consensus        82 ----G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~k  144 (293)
                          |.+||+||.   ..|+|.|++..||.+||+||.+ ||+++.|  |+.++.+++++|.+++++.+.+
T Consensus        81 vya~G~iClDiLq---NrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veq  147 (152)
T KOG0419|consen   81 VYADGSICLDILQ---NRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQ  147 (152)
T ss_pred             cCCCCcchHHHHh---cCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHH
Confidence                999999998   7999999999999999999965 6666655  5788889999999999988654

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=3.2e-32  Score=240.63  Aligned_cols=149  Identities=39%  Similarity=0.805  Sum_probs=130.1

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-------
Q 022719            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-------   81 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-------   81 (293)
                      +..++|||+|||+.|+++|+++|.++|..+||.+||.+|.||+||||+||.|+..|.||.+||++||.|+++|       
T Consensus         3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFkt   82 (244)
T KOG0894|consen    3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKT   82 (244)
T ss_pred             chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceec
Confidence            6789999999999999999999999999999999999999999999999999999999999999999999999       


Q ss_pred             -ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCCCCCChHHHHHHHHHhHHHHHHHHHHHHhhhCChhHHHHHHHHHHH
Q 022719           82 -TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEY  160 (293)
Q Consensus        82 -G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~~P~~~l~A~~~~~~dre~f~~kare~~~kya~~~~~~l~~e~~~~  160 (293)
                       .++||+|.++||+.|+|.|++.+||.+|.++|.++ ....++..-...+++.|++.+..+-  +....+.++..|+.+.
T Consensus        83 ntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~-~pTtGSI~tS~~~kr~lA~~SlaFN--~kn~~F~~lFPE~Vee  159 (244)
T KOG0894|consen   83 NTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTED-SPTTGSIETSDQDKRMLAKSSLAFN--LKNPKFCELFPEVVEE  159 (244)
T ss_pred             CceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcC-CCccCcccccHHHHHHHHHhhhhhc--cCChHHHHHhHHHHHH
Confidence             68999999999999999999999999999999653 2234444455678899999887766  4455566666665544

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=4.6e-32  Score=226.35  Aligned_cols=139  Identities=24%  Similarity=0.533  Sum_probs=125.8

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCC-----CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-
Q 022719            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLE-----ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-   81 (293)
Q Consensus         8 ms~~a~kRL~kElk~L~~~p~~gi~~~p~~-----~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-   81 (293)
                      ||..++.||+.|-+.|.++.+.||++.|..     .|++.|+|.|.|++||+||||.|.+++.||++||++||+++|.+ 
T Consensus         1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p   80 (158)
T KOG0424|consen    1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP   80 (158)
T ss_pred             CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence            567789999999999999999999999973     48999999999999999999999999999999999999999999 


Q ss_pred             ---------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 ---------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 ---------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                               |.|||+||+.. .+|+|+.||.+||++|+.||.+ |+.++-+  |...|.+||..|.++||.++++|+.
T Consensus        81 l~HPNVypsgtVcLsiL~e~-~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~  157 (158)
T KOG0424|consen   81 LFHPNVYPSGTVCLSILNEE-KDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK  157 (158)
T ss_pred             CcCCCcCCCCcEehhhhccc-cCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence                     99999999842 4599999999999999999955 5555544  5678889999999999999998874

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=5.4e-32  Score=234.92  Aligned_cols=152  Identities=31%  Similarity=0.536  Sum_probs=136.1

Q ss_pred             CChHHHHHHHHHHHHHhhCC---CCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---
Q 022719            8 LKNPAVKRILQEVKEMQSNP---SDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---   81 (293)
Q Consensus         8 ms~~a~kRL~kElk~L~~~p---~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---   81 (293)
                      |++ +.+||.+|++++.+++   -.||.+....+|+.+..+.|.||+|||||||+|.+.|.+|++|||+||+|+|.|   
T Consensus         1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw   79 (200)
T KOG0418|consen    1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW   79 (200)
T ss_pred             Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence            677 8999999999999988   679999999999999999999999999999999999999999999999999999   


Q ss_pred             --------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHHH--HHHHHHhHHHHHHHHHHHHhhhCCh--
Q 022719           82 --------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGS--LDYKKEERRALAIKSREAAPKFGTP--  148 (293)
Q Consensus        82 --------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~A--~~~~~~dre~f~~kare~~~kya~~--  148 (293)
                              |.|||+||+   +.|.+++|++++|++||++|.. +|.++..|  +..|.++++.|.+.+|.|+..|++.  
T Consensus        80 HPnVSs~tGaICLDilk---d~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~~  156 (200)
T KOG0418|consen   80 HPNVSSQTGAICLDILK---DQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGRL  156 (200)
T ss_pred             cCCCCcccccchhhhhh---cccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCC
Confidence                    999999998   8999999999999999999965 66666554  4555699999999999999999865  


Q ss_pred             ----hHHHHHHHHHHHHhc
Q 022719          149 ----ERQKLIDEIHEYMLS  163 (293)
Q Consensus       149 ----~~~~l~~e~~~~~~~  163 (293)
                          .+++.++.+.+..-+
T Consensus       157 ~~~~~~~~~v~~l~~mGf~  175 (200)
T KOG0418|consen  157 PDDPWDKKKVDSLIEMGFS  175 (200)
T ss_pred             CCCchhHHHHHHHHHhccc
Confidence                356677777766543

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.5e-31  Score=216.45  Aligned_cols=137  Identities=31%  Similarity=0.698  Sum_probs=123.1

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecC-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-----
Q 022719            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-----   81 (293)
Q Consensus         8 ms~~a~kRL~kElk~L~~~p~~gi~~~p~-~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-----   81 (293)
                      |+..|+|||++||++|..++|+||.+.|. ++|+|+|.|.|.||++|+|+||+|..++.||.|||.+||+++|..     
T Consensus         1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP   80 (165)
T KOG0426|consen    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP   80 (165)
T ss_pred             CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence            56789999999999999999999999997 679999999999999999999999999999999999999999987     


Q ss_pred             -----ccceeccCCCCC----------CCCCCcccHHHHHHHHHHcCCCCCCCh----HHHHHHHHHhHHHHHHHHHHHH
Q 022719           82 -----TKICLSISNHHP----------EHWQPSWSVRTALVALIAFMPTNPNGA----LGSLDYKKEERRALAIKSREAA  142 (293)
Q Consensus        82 -----G~ICLsiL~~~p----------e~W~P~~sI~~VL~~I~~lL~~~P~~~----l~A~~~~~~dre~f~~kare~~  142 (293)
                           |+||++||....          +.|+|.++++.||+++.+|| ..|++.    ..|..++.+||++|.+.+|..+
T Consensus        81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SML-aEPNdESgANvdA~~mWRe~R~ef~~i~~~lv  159 (165)
T KOG0426|consen   81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSML-AEPNDESGANVDACKMWREDREEFEKIAKRLV  159 (165)
T ss_pred             cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHH-cCCCcccCcccHHHHHHHHhHHHHHHHHHHHH
Confidence                 999999996431          68999999999999999999 444433    3367889999999999999888


Q ss_pred             hhh
Q 022719          143 PKF  145 (293)
Q Consensus       143 ~ky  145 (293)
                      .|-
T Consensus       160 rKt  162 (165)
T KOG0426|consen  160 RKT  162 (165)
T ss_pred             HHh
Confidence            763

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.9e-30  Score=219.52  Aligned_cols=135  Identities=30%  Similarity=0.618  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCC-CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--------
Q 022719           11 PAVKRILQEVKEMQSNPSDDFMSLPLE-ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--------   81 (293)
Q Consensus        11 ~a~kRL~kElk~L~~~p~~gi~~~p~~-~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--------   81 (293)
                      .+..-|+++|++|+++|..|+.+...+ .|+++|.+.|.||++|+||||+|+.++.||.|||++||+++|+|        
T Consensus         5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy   84 (171)
T KOG0425|consen    5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY   84 (171)
T ss_pred             hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC
Confidence            367889999999999999999997775 49999999999999999999999999999999999999999999        


Q ss_pred             --ccceeccCCCCC----------CCCCCcccHHHHHHHHHHcCCC----CCCChHHHHHHHHHhHHHHHHHHHHHHhhh
Q 022719           82 --TKICLSISNHHP----------EHWQPSWSVRTALVALIAFMPT----NPNGALGSLDYKKEERRALAIKSREAAPKF  145 (293)
Q Consensus        82 --G~ICLsiL~~~p----------e~W~P~~sI~~VL~~I~~lL~~----~P~~~l~A~~~~~~dre~f~~kare~~~ky  145 (293)
                        |++|++||....          +.|.|.+|+++||++|++||.+    .|.|.+ |+..+.+++++|.+++++++.+.
T Consensus        85 ~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVD-Aa~~~Ren~~EykkkV~r~vr~s  163 (171)
T KOG0425|consen   85 EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVD-AAKEWRENPEEYKKKVRRCVRRS  163 (171)
T ss_pred             CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchH-HHHHHhhCHHHHHHHHHHHHHHH
Confidence              999999996532          6899999999999999999943    233333 45556688999999999998765


Q ss_pred             C
Q 022719          146 G  146 (293)
Q Consensus       146 a  146 (293)
                      .
T Consensus       164 ~  164 (171)
T KOG0425|consen  164 Q  164 (171)
T ss_pred             H
Confidence            3

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=99.97  E-value=1e-30  Score=219.81  Aligned_cols=126  Identities=40%  Similarity=0.830  Sum_probs=111.1

Q ss_pred             HHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------cc
Q 022719           15 RILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------TK   83 (293)
Q Consensus        15 RL~kElk~L~~~p~~gi~~~p~~~-di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------G~   83 (293)
                      ||++|+++|+++++.|+.+.+.++ |+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|          |.
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~   80 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR   80 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999986 9999999999999999999999999999999999999999999          99


Q ss_pred             ceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHH
Q 022719           84 ICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAA  142 (293)
Q Consensus        84 ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~  142 (293)
                      ||+++|+  ++.|+|.++|.+||.+|++||.+ +++++.+  ++.++.+|+++|.++||+|.
T Consensus        81 icl~~l~--~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~  140 (140)
T PF00179_consen   81 ICLDILN--PESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA  140 (140)
T ss_dssp             BGHGGGT--TTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred             chhhhhh--cccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence            9999997  24699999999999999999943 4444444  45777899999999999873

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=99.97  E-value=5.5e-30  Score=215.77  Aligned_cols=127  Identities=40%  Similarity=0.806  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------cc
Q 022719           14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------TK   83 (293)
Q Consensus        14 kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------G~   83 (293)
                      |||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||.|+|.+          |.
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~   81 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK   81 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999988          99


Q ss_pred             ceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHH
Q 022719           84 ICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAA  142 (293)
Q Consensus        84 ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~  142 (293)
                      ||+++|..  +.|+|+++|.+||.+|+++|.+ +++++.+  |+.++.+|++.|.++|++|+
T Consensus        82 icl~~l~~--~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~  141 (141)
T cd00195          82 ICLSILKT--HGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT  141 (141)
T ss_pred             CchhhcCC--CCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence            99999982  3499999999999999999964 4444444  56777899999999999874

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.96  E-value=6.7e-29  Score=210.09  Aligned_cols=131  Identities=36%  Similarity=0.756  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------c
Q 022719           14 KRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------T   82 (293)
Q Consensus        14 kRL~kElk~L~~~p~~gi~~~p~~~-di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------G   82 (293)
                      +||++|+++|++++++|+.+.+.++ |+++|+++|.||.+|||+||.|++.|.||++||++||+|+|.+          |
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G   80 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG   80 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence            5999999999999999999998875 9999999999999999999999999999999999999999999          9


Q ss_pred             cceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhC
Q 022719           83 KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  146 (293)
Q Consensus        83 ~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya  146 (293)
                      .||+++|.  ++.|+|.+++++||.+|+++|.+ +++++.+  |+.++.++++.|.++++++++||.
T Consensus        81 ~icl~~l~--~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~  145 (145)
T smart00212       81 EICLDILK--QEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA  145 (145)
T ss_pred             CEehhhcC--CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            99999996  26899999999999999999955 4455444  567778999999999999999874

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.5e-29  Score=209.18  Aligned_cols=132  Identities=26%  Similarity=0.538  Sum_probs=119.6

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-------
Q 022719            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-------   81 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-------   81 (293)
                      .....|||++|+..|.....+||+++|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|       
T Consensus        27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV  106 (175)
T KOG0421|consen   27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV  106 (175)
T ss_pred             CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence            4567899999999999999999999999999999999999999999999999999999999999999999999       


Q ss_pred             ---ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhh
Q 022719           82 ---TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  144 (293)
Q Consensus        82 ---G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~k  144 (293)
                         |.|||+||+   +.|+..|.+++||++||+||-+ |-..+++  |++++ .|.++|.+.+.++-++
T Consensus       107 D~~GnIcLDILk---dKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW-~d~~eykk~l~~~Y~~  171 (175)
T KOG0421|consen  107 DLSGNICLDILK---DKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELW-SDQEEYKKYLEALYKE  171 (175)
T ss_pred             cccccchHHHHH---HHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHh-cCHHHHHHHHHHHhhc
Confidence               999999998   9999999999999999999944 3345666  47888 5999999888665443

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.5e-27  Score=203.45  Aligned_cols=143  Identities=28%  Similarity=0.527  Sum_probs=133.5

Q ss_pred             CCCcCCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus         1 ma~~~~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      |+ ...|...-.+|.|.+|++.|..+||.||.+.++++|++...+.|.||.||||++|+|++.+.+..|||++||+-+|+
T Consensus         1 m~-snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFl   79 (223)
T KOG0423|consen    1 MA-SNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFL   79 (223)
T ss_pred             CC-cccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceee
Confidence            66 45889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           81 T----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        81 T----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                      |          |.||++.|+   .+|+|+++|+.||..|.+||.+ ||+++++  |..++.+++++|.+.+         
T Consensus        80 TKIFHPNVaaNGEICVNtLK---kDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rA---------  147 (223)
T KOG0423|consen   80 TKIFHPNVAANGEICVNTLK---KDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRA---------  147 (223)
T ss_pred             eeeccCCcccCceehhhhhh---cccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHH---------
Confidence            9          999999998   8899999999999999999976 9998887  4566669999999998         


Q ss_pred             hhHHHHHHHHHHH
Q 022719          148 PERQKLIDEIHEY  160 (293)
Q Consensus       148 ~~~~~l~~e~~~~  160 (293)
                          +++++||+.
T Consensus       148 ----Rl~TeIHa~  156 (223)
T KOG0423|consen  148 ----RLYTEIHAK  156 (223)
T ss_pred             ----HHHHHhhcC
Confidence                688899977

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.9e-25  Score=185.90  Aligned_cols=134  Identities=27%  Similarity=0.521  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEE-ecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---------
Q 022719           12 AVKRILQEVKEMQSNPSDDFMS-LPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------   81 (293)
Q Consensus        12 a~kRL~kElk~L~~~p~~gi~~-~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------   81 (293)
                      +.+||++|+.+|++++...+.- ..++.|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.|         
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe   81 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE   81 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence            6799999999999998775543 445789999999999 89999999999999999999999999999999         


Q ss_pred             -ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHHH--HHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719           82 -TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGS--LDYKKEERRALAIKSREAAPKFGTP  148 (293)
Q Consensus        82 -G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~A--~~~~~~dre~f~~kare~~~kya~~  148 (293)
                       |.+|+.|+..  |.|+|...+++||..|..++.+ +|.+++.+  +..|.+|+.+|.+++.+|++||+.+
T Consensus        82 ~gqvClPiis~--EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~  150 (153)
T KOG0422|consen   82 KGQVCLPIISA--ENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK  150 (153)
T ss_pred             CCceeeeeeec--ccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence             9999999985  8999999999999999999965 66777663  5666799999999999999999865

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.4e-24  Score=186.04  Aligned_cols=132  Identities=26%  Similarity=0.568  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-----------
Q 022719           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-----------   81 (293)
Q Consensus        13 ~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-----------   81 (293)
                      -|||..|+..|...   ++.+....+++.++++.+.||.+|||+||+|++++.+|++|||+.|+|.|++           
T Consensus         5 ~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~S   81 (189)
T KOG0416|consen    5 KRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEAS   81 (189)
T ss_pred             ccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhcc
Confidence            48999999999884   4577778888999999999999999999999999999999999999999999           


Q ss_pred             ccceeccCCCCCCCCCCcccHHHHHHHHHHcCC--CCCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCChhH
Q 022719           82 TKICLSISNHHPEHWQPSWSVRTALVALIAFMP--TNPNGALG--SLDYKKEERRALAIKSREAAPKFGTPER  150 (293)
Q Consensus        82 G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~--~~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~~~  150 (293)
                      |.|||++++   ..|+|.+.+..|+..+.-.|.  .||.+++|  |+.++..+++.|.+++|++++||+.+..
T Consensus        82 GsVCLDViN---QtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~  151 (189)
T KOG0416|consen   82 GSVCLDVIN---QTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEA  151 (189)
T ss_pred             CccHHHHHh---hhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhh
Confidence            999999999   789999999999987665443  37788877  4666679999999999999999998774

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.8e-23  Score=179.57  Aligned_cols=134  Identities=23%  Similarity=0.451  Sum_probs=114.0

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEE----ecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-
Q 022719            7 NLKNPAVKRILQEVKEMQSNPSDDFMS----LPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-   81 (293)
Q Consensus         7 ~ms~~a~kRL~kElk~L~~~p~~gi~~----~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-   81 (293)
                      ...+.+.-||.+|+.++.-  |+++..    .+.+-+..+++++|. |.++.|+||.|.|.+.+|+.||++||+|+|+| 
T Consensus        24 ~~~s~a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk  100 (184)
T KOG0420|consen   24 KKVSAALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK  100 (184)
T ss_pred             ccccHHHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec
Confidence            3456678888888888854  555542    233333336999999 99999999999999999999999999999999 


Q ss_pred             ---------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhC
Q 022719           82 ---------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  146 (293)
Q Consensus        82 ---------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya  146 (293)
                               |.|||+||+   ++|+|+.+|.+|+.+|+.||.+ +|+|++|  |++.+.+|++.|..+||+....++
T Consensus       101 V~HPNId~~GnVCLnILR---edW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~  174 (184)
T KOG0420|consen  101 VYHPNIDLDGNVCLNILR---EDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC  174 (184)
T ss_pred             cccCCcCCcchHHHHHHH---hcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence                     999999999   8899999999999999999977 8889887  678888999999999999876654

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.7e-22  Score=166.79  Aligned_cols=107  Identities=26%  Similarity=0.622  Sum_probs=100.9

Q ss_pred             CCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---
Q 022719            5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---   81 (293)
Q Consensus         5 ~~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---   81 (293)
                      +--|+..+.+||+||+.+|+.+||.|+... ..+|+..|.+-+.|.+||.|+|..|.+.+.||+.||+..|.|.|..   
T Consensus         9 rk~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P   87 (161)
T KOG0427|consen    9 RKALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAP   87 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCC
Confidence            345778899999999999999999999877 7789999999999999999999999999999999999999999998   


Q ss_pred             --------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC
Q 022719           82 --------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT  115 (293)
Q Consensus        82 --------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~  115 (293)
                              |.|||+||.   ++|+|++++.+|.++|.+||.+
T Consensus        88 ~HPHiYSNGHICL~iL~---d~WsPAmsv~SvClSIlSMLSS  126 (161)
T KOG0427|consen   88 LHPHIYSNGHICLDILY---DSWSPAMSVQSVCLSILSMLSS  126 (161)
T ss_pred             CCCceecCCeEEEEeec---ccCCcchhhHHHHHHHHHHHcc
Confidence                    999999998   9999999999999999999954

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=7.1e-15  Score=131.18  Aligned_cols=133  Identities=18%  Similarity=0.262  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCC--CCCCeeeeec----------
Q 022719           14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP--FKPPSFMLLT----------   81 (293)
Q Consensus        14 kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP--~~PP~v~F~T----------   81 (293)
                      -.|+.|+..+.+.+.+||++.|+..|-+.|.++|++ +.+.|.||+|+|.|.+|++||  ..-|+|.|.+          
T Consensus        22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~  100 (258)
T KOG0429|consen   22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK  100 (258)
T ss_pred             HHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence            357778888888999999999999999999999996 556999999999999999999  3689999999          


Q ss_pred             -ccceeccCCCCCCCCCC-cccHHHHHHHHHHcCCCCCCCh------HHHHHHHHHhHHHHHHHHHHHHhhhCChhHH
Q 022719           82 -TKICLSISNHHPEHWQP-SWSVRTALVALIAFMPTNPNGA------LGSLDYKKEERRALAIKSREAAPKFGTPERQ  151 (293)
Q Consensus        82 -G~ICLsiL~~~pe~W~P-~~sI~~VL~~I~~lL~~~P~~~------l~A~~~~~~dre~f~~kare~~~kya~~~~~  151 (293)
                       +..|++-  .+++ |+. ..+|++||++|+.+|.+ |+..      -+|+.+|.+++++|.++++++++.+-+..|+
T Consensus       101 skeLdl~r--af~e-WRk~ehhiwqvL~ylqriF~d-pd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~~iyD  174 (258)
T KOG0429|consen  101 SKELDLNR--AFPE-WRKEEHHIWQVLVYLQRIFYD-PDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRSMIYD  174 (258)
T ss_pred             ccceeHhh--hhhh-hhccccHHHHHHHHHHHHhcC-cccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence             5555543  3455 755 78999999999999943 3321      2366778899999999999999876655544

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.5e-15  Score=158.96  Aligned_cols=105  Identities=26%  Similarity=0.472  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-----------
Q 022719           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-----------   81 (293)
Q Consensus        13 ~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-----------   81 (293)
                      .+..+.|++-|..+-|.||+++..++.+....+.|.||.+|||.+|.|.|.|.||++||..||.|...+           
T Consensus       853 ~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~  932 (1101)
T KOG0895|consen  853 AKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE  932 (1101)
T ss_pred             HHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc
Confidence            445566777788888999999999999999999999999999999999999999999999999999988           


Q ss_pred             -ccceeccCCCC----CCCCCCcccHHHHHHHHHHcCCC-CC
Q 022719           82 -TKICLSISNHH----PEHWQPSWSVRTALVALIAFMPT-NP  117 (293)
Q Consensus        82 -G~ICLsiL~~~----pe~W~P~~sI~~VL~~I~~lL~~-~P  117 (293)
                       |+|||++|++|    -+-|+|+.+|.+||++||.|+.. .|
T Consensus       933 ~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~p  974 (1101)
T KOG0895|consen  933 DGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEP  974 (1101)
T ss_pred             ccceehhhhccccCCCccccCcchhHHHHHHHhhhhhccccc
Confidence             99999999986    37899999999999999999743 44

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=2.6e-13  Score=142.52  Aligned_cols=106  Identities=26%  Similarity=0.466  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---------
Q 022719           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------   81 (293)
Q Consensus        11 ~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------   81 (293)
                      -..+|+++|++.|.++.+.|+++.|.+.++...++.|.||.||||++|+|.|+|.||..||..||.+.++|         
T Consensus       282 ~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN  361 (1101)
T KOG0895|consen  282 NWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN  361 (1101)
T ss_pred             hhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999         


Q ss_pred             ----ccceeccCCCCC----CCCCCc-ccHHHHHHHHHHcCCCC
Q 022719           82 ----TKICLSISNHHP----EHWQPS-WSVRTALVALIAFMPTN  116 (293)
Q Consensus        82 ----G~ICLsiL~~~p----e~W~P~-~sI~~VL~~I~~lL~~~  116 (293)
                          |+||+++|..|-    +.|+|. .+|.++|..|+.++.++
T Consensus       362 lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e  405 (1101)
T KOG0895|consen  362 LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE  405 (1101)
T ss_pred             cccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence                999999998762    689997 89999999999998554

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=6.4e-10  Score=92.74  Aligned_cols=96  Identities=28%  Similarity=0.455  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhhCCCCCeEEec--CCCC--ceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--------
Q 022719           14 KRILQEVKEMQSNPSDDFMSLP--LEEN--IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--------   81 (293)
Q Consensus        14 kRL~kElk~L~~~p~~gi~~~p--~~~d--i~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--------   81 (293)
                      -||++|+..=++--.+|....-  +.+|  +..|...|.||+.|+||+-+|.++|.+..+||..||.|+|.+        
T Consensus         8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn   87 (138)
T KOG0896|consen    8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVN   87 (138)
T ss_pred             hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccc
Confidence            4788888877654444443322  2334  568999999999999999999999999999999999999999        


Q ss_pred             ---ccc---eeccCCCCCCCCCCcccHHHHHHHHHHcC
Q 022719           82 ---TKI---CLSISNHHPEHWQPSWSVRTALVALIAFM  113 (293)
Q Consensus        82 ---G~I---CLsiL~~~pe~W~P~~sI~~VL~~I~~lL  113 (293)
                         |.|   -+..|    ..|+-.+++..+|..++.+|
T Consensus        88 ~~~g~Vd~~~i~~L----~~W~~~y~~~~vl~~lr~~m  121 (138)
T KOG0896|consen   88 SSNGVVDPRDITVL----ARWQRSYSIKMVLGQLRKEM  121 (138)
T ss_pred             cCCCccCccccchh----hcccccchhhHHHHhhhHHH
Confidence               222   13334    58999999999999998765

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=1.5e-05  Score=65.15  Aligned_cols=53  Identities=17%  Similarity=0.411  Sum_probs=48.1

Q ss_pred             EEEEeeCCCCCCCCCCeeeeec-----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCC
Q 022719           60 YHGRIQLPAEYPFKPPSFMLLT-----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMP  114 (293)
Q Consensus        60 F~~~I~fP~dYP~~PP~v~F~T-----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~  114 (293)
                      .-+.+.|++|||+.||.++...           |.||+.+|.  +++|+..++|+.++++|-..+.
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt--~qgwssay~Ve~vi~qiaatlV   76 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT--KQGWSSAYEVERVIMQIAATLV   76 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc--cccccchhhHHHHHHHHHHHhh
Confidence            3567889999999999999888           899999998  5899999999999999999884

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=97.31  E-value=0.00046  Score=57.84  Aligned_cols=62  Identities=24%  Similarity=0.519  Sum_probs=51.3

Q ss_pred             CCCeEEEEeeCCCCCCCCCCeeeeec-------------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCCCC
Q 022719           56 EGGIYHGRIQLPAEYPFKPPSFMLLT-------------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP  117 (293)
Q Consensus        56 eGG~F~~~I~fP~dYP~~PP~v~F~T-------------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~~P  117 (293)
                      .|+.|.+.|.||++||..||.|....             |.+|+.--....+.|.|...+.++|...+.+|.+.+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~~~  108 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLEDGL  108 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHHhh
Confidence            58999999999999999999997775             999993222223899999999999999999995433

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=97.22  E-value=0.00036  Score=57.92  Aligned_cols=71  Identities=24%  Similarity=0.473  Sum_probs=50.3

Q ss_pred             CceEEEEEEeCCCCCCCCCCeEE--EEeeCCCCCCCCCCeeeeec---------------ccceeccCCCCCCCCCC-cc
Q 022719           39 NIFEWQFAIRGPGDTEFEGGIYH--GRIQLPAEYPFKPPSFMLLT---------------TKICLSISNHHPEHWQP-SW  100 (293)
Q Consensus        39 di~~W~~~I~GP~~TpYeGG~F~--~~I~fP~dYP~~PP~v~F~T---------------G~ICLsiL~~~pe~W~P-~~  100 (293)
                      .+....++|.    -.|+|..|.  +.|.||.+||..||.|...-               |+|.+..|.    .|++ ..
T Consensus        31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~----~W~~~~s  102 (121)
T PF05743_consen   31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ----NWNPPSS  102 (121)
T ss_dssp             EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH----T--TTTS
T ss_pred             eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc----cCCCCCC
Confidence            4556666664    247888885  67889999999999997655               888888884    7887 88


Q ss_pred             cHHHHHHHHHHcCCCCC
Q 022719          101 SVRTALVALIAFMPTNP  117 (293)
Q Consensus       101 sI~~VL~~I~~lL~~~P  117 (293)
                      ++.+++..+...|.++|
T Consensus       103 ~L~~lv~~l~~~F~~~p  119 (121)
T PF05743_consen  103 NLVDLVQELQAVFSEEP  119 (121)
T ss_dssp             -HHHHHHHHHHCCCHS-
T ss_pred             CHHHHHHHHHHHHhHcC
Confidence            99999999998885543

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=96.79  E-value=0.00065  Score=57.76  Aligned_cols=90  Identities=22%  Similarity=0.313  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHHHHhh-------CCCCCeEEecCCCCceEEEEEEeCCCCCCCCC--CeEEEEeeCCCCCCCCCCeeeee
Q 022719           10 NPAVKRILQEVKEMQS-------NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEG--GIYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus        10 ~~a~kRL~kElk~L~~-------~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeG--G~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      ..-..||..||..|-+       +-...|.+. +..+=+.|.+..-=    .|+-  --|.+++.+|..||..||.+..-
T Consensus        23 ~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lP   97 (161)
T PF08694_consen   23 DLWVQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALP   97 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-G
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceecc
Confidence            4567899999998754       112233333 22223444433210    0112  23556677899999999999876


Q ss_pred             c-----------ccceeccCCCCCCCC---CCcccHHHHH
Q 022719           81 T-----------TKICLSISNHHPEHW---QPSWSVRTAL  106 (293)
Q Consensus        81 T-----------G~ICLsiL~~~pe~W---~P~~sI~~VL  106 (293)
                      .           |+|||++=  +..-|   .|.++|...|
T Consensus        98 eLdGKTaKMYRGGkIClt~H--FkPLWakN~PkfGIaHal  135 (161)
T PF08694_consen   98 ELDGKTAKMYRGGKICLTDH--FKPLWAKNVPKFGIAHAL  135 (161)
T ss_dssp             GGTTT-SSBCCCCBB---TT--HHHHHHCTTTT--HHHHH
T ss_pred             ccCCchhhhhcCceEeeecc--cchhhhhcCCchhHHHHH
Confidence            6           99999842  12234   3566666654

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.64  E-value=0.016  Score=48.80  Aligned_cols=87  Identities=23%  Similarity=0.404  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCC----------eEEEEeeCCCCCCCCCCeeeee
Q 022719           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGG----------IYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus        11 ~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG----------~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      .-++||..||+.|-.      ++.-+.++-..|.-.=.-++||-|-|.          .|.+++.+|-.||-..|.+..-
T Consensus        27 ~wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialp  100 (167)
T KOG3357|consen   27 LWVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALP  100 (167)
T ss_pred             HHHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccc
Confidence            457899999998854      222233333344433344677777663          3556677899999999888665


Q ss_pred             c-----------ccceeccCCCCCCCCC---CcccHHHH
Q 022719           81 T-----------TKICLSISNHHPEHWQ---PSWSVRTA  105 (293)
Q Consensus        81 T-----------G~ICLsiL~~~pe~W~---P~~sI~~V  105 (293)
                      .           |+|||.-  +++.-|.   |..+|...
T Consensus       101 eldgktakmyrggkiclt~--hfkplwarn~pkfgiaha  137 (167)
T KOG3357|consen  101 ELDGKTAKMYRGGKICLTD--HFKPLWARNVPKFGIAHA  137 (167)
T ss_pred             ccCchhhhhhcCceEeecc--ccchhhhhcCcchhHHHH
Confidence            4           9999862  2234452   44555543

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=95.18  E-value=0.062  Score=42.28  Aligned_cols=66  Identities=20%  Similarity=0.176  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeC--CCCCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719           14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRG--PGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus        14 kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~G--P~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      .+...|+..|+.--+..+ ......+...+.+.+.+  ...+.-....+++.|.||++||..+|.|.+.
T Consensus         4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~   71 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLE   71 (113)
T ss_dssp             HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEE
T ss_pred             HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEE
Confidence            567788888887554444 23334455566666632  2333444668999999999999999999765

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.89  E-value=0.13  Score=49.70  Aligned_cols=102  Identities=24%  Similarity=0.381  Sum_probs=68.8

Q ss_pred             CCCChHHHHHHHHHHHHHhhC-CCCCeEEecCC--CCceEEEEEEeCCCCCCCCCCeEE--EEeeCCCCCCCCCCeeeee
Q 022719            6 YNLKNPAVKRILQEVKEMQSN-PSDDFMSLPLE--ENIFEWQFAIRGPGDTEFEGGIYH--GRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus         6 ~~ms~~a~kRL~kElk~L~~~-p~~gi~~~p~~--~di~~W~~~I~GP~~TpYeGG~F~--~~I~fP~dYP~~PP~v~F~   80 (293)
                      +|-...+.+.+...+.....- |....+.+.+.  .+++...++|.    .+|.|..|.  +.|.+.+.||+.||.|...
T Consensus        15 ~~~~~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~Vn   90 (365)
T KOG2391|consen   15 YNYKDLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVN   90 (365)
T ss_pred             ccchhhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEec
Confidence            344444555555555555443 22234445443  35666666664    467787776  6788999999999999655


Q ss_pred             c---------------ccceeccCCCCCCCCCC-cccHHHHHHHHHHcCCC
Q 022719           81 T---------------TKICLSISNHHPEHWQP-SWSVRTALVALIAFMPT  115 (293)
Q Consensus        81 T---------------G~ICLsiL~~~pe~W~P-~~sI~~VL~~I~~lL~~  115 (293)
                      -               |.|.|..|.    .|.+ +.++..++..+...|.+
T Consensus        91 PT~~M~ik~~~hVd~nG~V~LPYLh----~W~~pssdLv~Liq~l~a~f~~  137 (365)
T KOG2391|consen   91 PTSTMIIKVHEHVDPNGKVYLPYLH----NWDPPSSDLVGLIQELIAAFSE  137 (365)
T ss_pred             CCchhhhHHhhccCCCCeEechhhc----cCCCccchHHHHHHHHHHHhcC
Confidence            4               999999995    5875 77888888888888744

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=94.47  E-value=0.19  Score=39.18  Aligned_cols=45  Identities=20%  Similarity=0.213  Sum_probs=31.2

Q ss_pred             CCeEEEEeeCCCCCCCCCCeeeeecccceeccCCCCCCCCCCcccHHHHHHHHHHcC
Q 022719           57 GGIYHGRIQLPAEYPFKPPSFMLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFM  113 (293)
Q Consensus        57 GG~F~~~I~fP~dYP~~PP~v~F~TG~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL  113 (293)
                      .-.+.+.+.||.+||..+|.+.+.+            ..|-+...+..+...|....
T Consensus        40 ~~~~~l~~~~p~~YP~~~P~i~~~~------------~~~l~~~~~~~l~~~l~~~~   84 (107)
T smart00591       40 YVSLTLQVKLPENYPDEAPPISLLN------------SEGLSDEQLAELLKKLEEIA   84 (107)
T ss_pred             ceEEEEEEECCCCCCCCCCCeEEEC------------CCCCCHHHHHHHHHHHHHHH
Confidence            4558899999999999999997652            12544455555555555555

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=90.15  E-value=3.1  Score=34.76  Aligned_cols=84  Identities=17%  Similarity=0.288  Sum_probs=55.3

Q ss_pred             CCeEEecCCCCceEEEEEEeC--CCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--------ccc--eeccCCCC----
Q 022719           29 DDFMSLPLEENIFEWQFAIRG--PGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--------TKI--CLSISNHH----   92 (293)
Q Consensus        29 ~gi~~~p~~~di~~W~~~I~G--P~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--------G~I--CLsiL~~~----   92 (293)
                      .|+......+.-..|.+ |.|  -+.+.|....-.+-|.+|..||..+|.+.+..        |.|  |-+....+    
T Consensus        12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~   90 (122)
T PF14462_consen   12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRT   90 (122)
T ss_pred             cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCee
Confidence            35555555455556765 655  45667999999999999999999988776666        444  54333221    


Q ss_pred             -------CCCCCC-cccHHHHHHHHHHcC
Q 022719           93 -------PEHWQP-SWSVRTALVALIAFM  113 (293)
Q Consensus        93 -------pe~W~P-~~sI~~VL~~I~~lL  113 (293)
                             ...|.| .-+|.+.|..|...|
T Consensus        91 wQrWSRH~~~W~P~~D~l~T~l~~v~~~L  119 (122)
T PF14462_consen   91 WQRWSRHNNPWRPGVDDLWTHLARVEHAL  119 (122)
T ss_pred             eeeecCCCCCCCCCCCcHHHHHHHHHHHH
Confidence                   245777 346777777776655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	293
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		4e-26
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		1e-13
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		2e-13
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		2e-13
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		4e-13
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		4e-13
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		5e-13
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		1e-12
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-12
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		2e-12
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-12
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		2e-12
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		2e-12
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		3e-12
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		3e-12
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		3e-12
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		3e-12
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		3e-12
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		3e-12
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		4e-12
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		4e-12
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		4e-12
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		4e-12
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		1e-11
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		1e-11
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		1e-11
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		1e-11
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-11
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-11
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		2e-11
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-11
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		2e-11
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-11
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		2e-11
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		2e-11
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		2e-11
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		3e-11
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		3e-11
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		3e-11
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		3e-11
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		3e-11
1jas_A	152	Hsubc2b Length = 152		5e-11
3jvz_A	146	E2~ubiquitin-Hect Length = 146		7e-11
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		1e-10
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		1e-10
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		2e-10
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		4e-10
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		5e-10
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		6e-10
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		6e-10
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		6e-10
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		2e-09
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		3e-09
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		3e-09
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		3e-09
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		3e-09
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		3e-09
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		5e-09
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		7e-09
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		7e-09
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		1e-08
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		1e-08
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		1e-08
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		1e-08
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		3e-08
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		6e-08
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		7e-08
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		7e-08
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		8e-08
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		1e-07
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		3e-06
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		3e-06
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		3e-06
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		4e-06
4epo_A	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		8e-06
1j74_A	145	Crystal Structure Of Mms2 Length = 145		8e-06
3von_B	138	Crystalstructure Of The Ubiquitin Protease Length =		9e-06
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		1e-05
1zgu_A	139	Solution Structure Of The Human Mms2-Ubiquitin Comp		1e-05
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		1e-05
2c2v_C	142	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		1e-05
2hlw_A	170	Solution Structure Of The Human Ubiquitin-Conjugati		1e-05
2a4d_A	160	Structure Of The Human Ubiquitin-Conjugating Enzyme		1e-05
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		2e-05
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		2e-05
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		2e-05
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		2e-05
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		3e-05
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		3e-05
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		3e-05
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		3e-05
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		3e-05
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		5e-05
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		6e-05
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		7e-05
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		1e-04
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		1e-04
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		1e-04
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		2e-04
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		5e-04
2h2y_A	136	Crystal Structure Of Ubiquitin Conjugating Enzyme E		6e-04
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		6e-04
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		9e-04

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 9/135 (6%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A +R+ Q+   ++ +P     + PL  NI EW + +RGP  T +EGG YHG++  P E+P
Sbjct: 15  ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 74
Query: 72  FKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 123
           FKPPS  ++T        T++CLSI++ HP+ W P+WSV T L  L++FM       LGS
Sbjct: 75  FKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM-VEKGPTLGS 133
Query: 124 LDYKKEERRALAIKS 138
           ++     +R LA++S
Sbjct: 134 IETSDFTKRQLAVQS 148

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 25/123 (20%)
Query: 14  KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           K +L E+K +Q  P + F ++L  E +++ W+ AI GP +T +EGG +  R++ P +YP+
Sbjct: 10  KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69
Query: 73  KPPSFMLLTT----------KICLSISNHHP------------EHWQPSWSVRTALVALI 110
            PP+F  LT            +C+SI   HP            E W P+ +VRT L+++I
Sbjct: 70  SPPAFRFLTKMWHPNIYETGDVCISI--LHPPVDDPQSGELPSERWNPTQNVRTILLSVI 127
Query: 111 AFM 113
           + +
Sbjct: 128 SLL 130

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E++++Q +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 7   ALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYP 66
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ +V   L+++ + +  +PN
Sbjct: 67  FKPPKVAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 119

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 25/123 (20%)
Query: 14  KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           K +L E+K +Q  P + F ++L  E +++ W+ AI GP +T +EGG +  R++ P +YP+
Sbjct: 7   KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 66
Query: 73  KPPSFMLLTT----------KICLSISNHHP------------EHWQPSWSVRTALVALI 110
            PP+F  LT            +C+SI   HP            E W P+ +VRT L+++I
Sbjct: 67  SPPAFRFLTKMWHPNIYETGDVCISI--LHPPVDDPQSGELPSERWNPTQNVRTILLSVI 124
Query: 111 AFM 113
           + +
Sbjct: 125 SLL 127

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YP
Sbjct: 20  ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 79
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ +V   L+++ + +  +PN
Sbjct: 80  FKPPKIAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 132

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YP
Sbjct: 4   ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 63
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ +V   L+++ + +  +PN
Sbjct: 64  FKPPKIAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 116

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YP
Sbjct: 8   ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ +V   L+++ + +  +PN
Sbjct: 68  FKPPKIAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 120

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P  +  + P+ +++F WQ  I GP D+ + GG++   I  P++YP
Sbjct: 22  ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I     + W P+ ++   L+++ + + T+PN
Sbjct: 82  FKPPKVNFTTKIYHPNINSQGAICLDILK---DQWSPALTISKVLLSISSLL-TDPN 134

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ + GG++   I  P +YP
Sbjct: 2   ALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I     + W P+ ++   L+++ + + T+PN
Sbjct: 62  FKPPKVNFTTRIYHPNINSNGSICLDILR---DQWSPALTISKVLLSISSLL-TDPN 114

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 22/121 (18%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YP
Sbjct: 8   ALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 72  FKPPSFMLLTTKICLSISNHHPE--------------HWQPSWSVRTALVALIAFMPTNP 117
           FKPP  +  TTKI      +HP                W P+ +V   L+++ + +  +P
Sbjct: 68  FKPPK-IAFTTKI------YHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLL-CDP 119
Query: 118 N 118
           N
Sbjct: 120 N 120

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 20  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 80  FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 132

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A++RI +E++E+Q +P  +  + P+ ++IF W   I GP D+ ++GG++   +  P +YP
Sbjct: 5   AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FK P    +T            ICL I     + W P+ ++   L+++ + + T+PN
Sbjct: 65  FKAPRVTFMTKVYHPNINKNGVICLDILK---DQWSPALTLSRVLLSISSLL-TDPN 117

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 7   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 66
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 67  FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 119

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 2   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 62  FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 114

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 10  ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 69
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 70  FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 122

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 12  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 72  FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 124

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 1   ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 61  FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 113

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 12  ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 72  FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 124

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWGPALTISKVLLSICSLL-CDPN 116

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI +E+ +++ +P     + P+ ++++ WQ +I GP D+ + GG++   I  P +YPFK
Sbjct: 5   KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMP-TNPNGAL 121
           PP     T            ICL I     + W P+ ++   L+++ + +   NP+  L
Sbjct: 65  PPKISFTTKIYHPNINANGNICLDILK---DQWSPALTLSKVLLSICSLLTDANPDDPL 120

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 25/133 (18%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +Y
Sbjct: 4   ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 71  PFKPPSFMLLTT----------KICLSISNHHP-----------EHWQPSWSVRTALVAL 109
           P  PP                 ++C+SI  H P           E W P  SV   L+++
Sbjct: 64  PLSPPKMRFTCEMFHPNIYPDGRVCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSV 122
Query: 110 IAFM--PTNPNGA 120
           ++ +  P + +GA
Sbjct: 123 VSMLAEPNDESGA 135

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 25/138 (18%)
Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
           ++   A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   + 
Sbjct: 3   HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 62
Query: 66  LPAEYPFKPPSFMLLTT----------KICLSISNHHP-----------EHWQPSWSVRT 104
            P +YP  PP                 ++C+SI  H P           E W P  SV  
Sbjct: 63  FPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISIL-HAPGDDPMGYESSAERWSPVQSVEK 121
Query: 105 ALVALIAFM--PTNPNGA 120
            L+++++ +  P + +GA
Sbjct: 122 ILLSVVSMLAEPNDESGA 139

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 25/138 (18%)
Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
           ++   A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   + 
Sbjct: 2   HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 61
Query: 66  LPAEYPFKPPSFMLLTT----------KICLSISNHHP-----------EHWQPSWSVRT 104
            P +YP  PP                 ++C+SI  H P           E W P  SV  
Sbjct: 62  FPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISIL-HAPGDDPMGYESSAERWSPVQSVEK 120
Query: 105 ALVALIAFM--PTNPNGA 120
            L+++++ +  P + +GA
Sbjct: 121 ILLSVVSMLAEPNDESGA 138

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 25/133 (18%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +Y
Sbjct: 10  ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 69
Query: 71  PFKPPSFMLLTT----------KICLSISNHHP-----------EHWQPSWSVRTALVAL 109
           P  PP                 ++C+SI  H P           E W P  SV   L+++
Sbjct: 70  PLSPPKMRFTCEMFHPNIYPDGRVCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSV 128
Query: 110 IAFM--PTNPNGA 120
           ++ +  P + +GA
Sbjct: 129 VSMLAEPNDESGA 141

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL         W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPKVAFTTRIYHPNINSNGSICLDALR---SQWSPALTISKVLLSICSLL-CDPN 116

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ    GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E++++  +P     + P+ +++F WQ  I GP ++ ++GG++   I  P +YP
Sbjct: 5   ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 64
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP     T            ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 65  FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 117

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 22/121 (18%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 20  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 72  FKPPSFMLLTTKICLSISNHHPE--------------HWQPSWSVRTALVALIAFMPTNP 117
           FKPP  +  TT+I      +HP                W P+ ++   L+++ + +  +P
Sbjct: 80  FKPPK-VAFTTRI------YHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLL-CDP 131
Query: 118 N 118
           N
Sbjct: 132 N 132

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 22/121 (18%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 5   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 64
Query: 72  FKPPSFMLLTTKICLSISNHHPE--------------HWQPSWSVRTALVALIAFMPTNP 117
           FKPP  +  TT+I      +HP                W P+ ++   L+++ + +  +P
Sbjct: 65  FKPPK-VAFTTRI------YHPNINSNGSISLDILRSQWSPALTISKVLLSICSLL-CDP 116
Query: 118 N 118
           N
Sbjct: 117 N 117

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           +  P+ +R++++ K++Q +P       P E+NI  W+  I GP +T FE G +   ++  
Sbjct: 1   MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 68  AEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM---- 113
            EYP KPP+   ++            ICL I  +    W P++ V   L ++ + +    
Sbjct: 61  EEYPNKPPTVKFISKMFHPNVYADGSICLDILQN---RWSPTYDVAAILTSIQSLLDEPN 117
Query: 114 PTNPNGALGSLDYKKEER 131
           P +P  +L +  Y++  R
Sbjct: 118 PNSPANSLAAQLYQENRR 135

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 22/121 (18%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 2   ALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72  FKPPSFMLLTTKICLSISNHHP--------------EHWQPSWSVRTALVALIAFMPTNP 117
           FKPP  +  TT+I      +HP                W P+ ++   L+++ + +  +P
Sbjct: 62  FKPPK-VAFTTRI------YHPAINSNGSISLDILRSQWSPALTISKVLLSICSLL-CDP 113
Query: 118 N 118
           N
Sbjct: 114 N 114

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           ++  P+ +R++++ K++Q +P       P E+NI  W+  I GP +T FE G +   ++ 
Sbjct: 3   HMTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEF 62
Query: 67  PAEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM--- 113
             EYP KPP+   ++            ICL I  +    W P++ V   L ++ + +   
Sbjct: 63  TEEYPNKPPTVKFISKMFHPNVYADGSICLDILQN---RWSPTYDVAAILTSIQSLLDEP 119
Query: 114 -PTNPNGALGSLDYKKEER 131
            P +P  +L +  Y++  R
Sbjct: 120 NPNSPANSLAAQLYQENRR 138

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 22/121 (18%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 2   ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72  FKPPSFMLLTTKICLSISNHHPE--------------HWQPSWSVRTALVALIAFMPTNP 117
           FKPP  +  TT+I      +HP                W P+ ++   L+++ + +  +P
Sbjct: 62  FKPPK-VAFTTRI------YHPNINSNGSISLDILRSQWSPALTISKVLLSICSLL-CDP 113
Query: 118 N 118
           N
Sbjct: 114 N 114

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI +E + + + P    M++P+ EN   +   I GP  T +EGG Y   + LP +YP +
Sbjct: 4   RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM 113
           PP    LT           +ICL I     + W P+  +RT L+++ A +
Sbjct: 64  PPKVRFLTKIYHPNIDKLGRICLDILK---DKWSPALQIRTVLLSIQALL 110

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 18/141 (12%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 8   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
            P    LT           +ICL +      +W P+  +RT L+++ A + + NPN  L 
Sbjct: 68  APKVRFLTKIYHPNIDRLGRICLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLA 124
Query: 123 ---SLDYKKEERRALAIKSRE 140
              + D+ K E+ A A K+RE
Sbjct: 125 NDVAEDWIKNEQGAKA-KARE 144

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI +E + + + P    M++P+ EN   +   I GP  T +EGG Y   + LP +YP +
Sbjct: 4   RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM 113
           PP    LT           +ICL I     + W P+  +RT L+++ A +
Sbjct: 64  PPKVRFLTKIYHPNIDKLGRICLDILK---DKWSPALQIRTVLLSIQALL 110

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 22/121 (18%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72  FKPPSFMLLTTKICLSISNHHPE--------------HWQPSWSVRTALVALIAFMPTNP 117
           FKPP  +  TT+I      +HP                W P+ ++   L+++ + +  +P
Sbjct: 64  FKPPK-VAFTTRI------YHPNINSNGSISLDILRSQWSPALTISKVLLSICSLL-CDP 115
Query: 118 N 118
           N
Sbjct: 116 N 116

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 18/141 (12%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
            P    LT           +ICL +      +W P+  +RT L+++ A + + NPN  L 
Sbjct: 66  APKVRFLTKIYHPNIDRLGRICLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLA 122
Query: 123 ---SLDYKKEERRALAIKSRE 140
              + D+ K E+ A A K+RE
Sbjct: 123 NDVAEDWIKNEQGAKA-KARE 142

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           +  PA +R++++ K +Q +P       P E NI +W   I GP  T FE G +   I+  
Sbjct: 1   MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 68  AEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM---- 113
            EYP KPP+   L+            ICL I  +    W P++ V + L ++ + +    
Sbjct: 61  EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQN---RWSPTYDVSSILTSIQSLLDEPN 117
Query: 114 ---PTNPNGALGSLDYKKE-ERRALAI 136
              P N   A    + K+E E+R  AI
Sbjct: 118 PNSPANSQAAQLYQENKREYEKRVSAI 144

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 22/121 (18%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 1   ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 72  FKPPSFMLLTTKICLSISNHHPE--------------HWQPSWSVRTALVALIAFMPTNP 117
           FKPP  +  TT+I      +HP                W P+  +   L+++ + +  +P
Sbjct: 61  FKPPK-VAFTTRI------YHPNINSNGSISLDILRSQWSPALKISKVLLSICSLL-CDP 112
Query: 118 N 118
           N
Sbjct: 113 N 113

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 25/182 (13%)
Query: 3   EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
           E+ Y   +  + R+ +E+K++++    +  +   + N FEW   I+GP  T +EGG +  
Sbjct: 15  ENLYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTL 74
Query: 63  RIQLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIA 111
            I +P +YP+ PP    +T             ICL +  +    W P+ ++RTAL+++ A
Sbjct: 75  AITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKN---EWSPALTIRTALLSIQA 131
Query: 112 FM----PTNPNGALGSLDYKKEERRALAIKSREAAPK-FGT-PE---RQKLIDEIHEYML 162
            +    P +P  A  +  YK  E  AL +K+     K F T P+   R+ +I +I E   
Sbjct: 132 LLSDPQPDDPQDAEVAKMYK--ENHALFVKTASVWTKTFATGPKEEPREVIIKKITEMGF 189
Query: 163 SK 164
           S+
Sbjct: 190 SE 191

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 25/137 (18%)
Query: 18  QEVKEMQSNPSDDFMSLPLEEN-IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS 76
           +++ E+  NP + F +  +++N ++ W+  I GP DT +EGG++   +  P +YP +PP 
Sbjct: 24  RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPK 83
Query: 77  FMLLTT----------KICLSISNHHP-----------EHWQPSWSVRTALVALIAFMPT 115
              +T            +C+SI  H P           E W P  +V T ++++I+ +  
Sbjct: 84  MKFITEIWHPNVDKNGDVCISIL-HEPGEDKYGYEKPEERWLPIHTVETIMISVISML-A 141
Query: 116 NPNG-ALGSLDYKKEER 131
           +PNG +  ++D  KE R
Sbjct: 142 DPNGDSPANVDAAKEWR 158

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           +  PA KR++++ K +Q +P       P + NI  W   I GP DT ++GG +   +Q  
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 68  AEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-N 116
            +YP KPP+   ++            ICL I  +    W P + V   L ++ + +   N
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN---QWSPIYDVAAILTSIQSLLCDPN 117
Query: 117 PNGALGS 123
           PN    S
Sbjct: 118 PNSPANS 124

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 15/138 (10%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           L + + KRI +E+ ++  +P  +  + P  +NI+EW+  I GP  + +EGG++   I   
Sbjct: 45  LLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFT 104
Query: 68  AEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMP-TN 116
            EYPFKPP     T            ICL I     ++W P+ ++   L+++ + +   N
Sbjct: 105 PEYPFKPPKVTFRTRIYHCNINSQGVICLDILK---DNWSPALTISKVLLSICSLLTDCN 161
Query: 117 PNGAL-GSLDYKKEERRA 133
           P   L GS+  +    RA
Sbjct: 162 PADPLVGSIATQYMTNRA 179

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           + KRI +E+ E+  +P  +  + P  +NI+EW+  I GP  + +EGG++   I    +YP
Sbjct: 4   SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 63
Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMP-TNPNGA 120
           FKPP     T            ICL I     ++W P+ ++   L+++ + +   NP   
Sbjct: 64  FKPPKVTFRTRIYHCNINSQGVICLDILK---DNWSPALTISKVLLSICSLLTDCNPADP 120
Query: 121 L-GSLDYKKEERRA 133
           L GS+  +    RA
Sbjct: 121 LVGSIATQYMTNRA 134

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
           ++   KR+ QE++ +  +      + P  +N+F+W   + GP DT +E   Y   ++ P+
Sbjct: 7   RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPS 66
Query: 69  EYPFKPPSFMLLT----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           +YP+KPP     T            ICL I     E+W  S+ VRT L++L + +   PN
Sbjct: 67  DYPYKPPVVKFTTPCWHPNVDQSGNICLDILK---ENWTASYDVRTILLSLQSLL-GEPN 122
Query: 119 GA 120
            A
Sbjct: 123 NA 124

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 18/141 (12%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
            P    LT           +I L +      +W P+  +RT L+++ A + + NPN  L 
Sbjct: 66  APKVRFLTKIYHPAIDRLGRISLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLA 122
Query: 123 ---SLDYKKEERRALAIKSRE 140
              + D+ K E+ A A K+RE
Sbjct: 123 NDVAEDWIKNEQGAKA-KARE 142

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 18/141 (12%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
            P    LT           +I L +      +W P+  +RT L+++ A + + NPN  L 
Sbjct: 66  APKVRFLTKIYHPNIDRLGRISLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLA 122
Query: 123 ---SLDYKKEERRALAIKSRE 140
              + D+ K E+ A A K+RE
Sbjct: 123 NDVAEDWIKNEQGAKA-KARE 142

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           +  PA +R++++ K M+ +      + PL +N+  W   I GP DT +E G +   ++  
Sbjct: 1   MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 68  AEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP 117
            EYP KPP    L+           +ICL I  +    W P++ V + L ++ +    +P
Sbjct: 61  EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQN---RWTPTYDVASILTSIQSLF-NDP 116
Query: 118 NGA 120
           N A
Sbjct: 117 NPA 119

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 8   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
            P    +T           +ICL I     + W P+  +RT L+++ A +   NP+  L 
Sbjct: 68  APKVRFMTKIYHPNVDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLA 124
Query: 123 S 123
           +
Sbjct: 125 N 125

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 6   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
            P    +T           +ICL I     + W P+  +RT L+++ A +   NP+  L 
Sbjct: 66  APKVRFMTKIYHPNVDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLA 122
Query: 123 S 123
           +
Sbjct: 123 N 123

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 11  RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
            P    +T           +ICL I     + W P+  +RT L+++ A +   NP+  L 
Sbjct: 71  APKVRFMTKIYHPNVDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLA 127
Query: 123 S 123
           +
Sbjct: 128 N 128

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 4   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
            P    +T           +ICL I     + W P+  +RT L+++ A +   NP+  L 
Sbjct: 64  APKVRFMTKIYHPNVDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLA 120
Query: 123 S 123
           +
Sbjct: 121 N 121

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 9   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
            P    +T           +ICL I     + W P+  +RT L+++ A +   NP+  L 
Sbjct: 69  APKVRFMTKIYHPNVDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLA 125
Query: 123 S 123
           +
Sbjct: 126 N 126

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 25/148 (16%)
Query: 18  QEVKEMQSNPSDDFMSLPLEEN-IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS 76
           +++ +M+  P D F +  +++N I++W+  + GP DT +EGG +   +  P +YP KPP 
Sbjct: 10  KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 77  FMLLTT----------KICLSISNHHP-----------EHWQPSWSVRTALVALIAFMPT 115
              ++            +C+SI  H P           E W P  +V T L+++I+ M T
Sbjct: 70  MKFISEIWHPNIDKEGNVCISIL-HDPGDDKWGYERPEERWLPVHTVETILLSVIS-MLT 127
Query: 116 NPN-GALGSLDYKKEERRALAIKSREAA 142
           +PN  +  ++D  K +R   A   ++ A
Sbjct: 128 DPNFESPANVDAAKMQRENYAEFKKKVA 155

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 19/150 (12%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A +R+++E++E++     +F ++ ++E N+  WQ  I  P +  ++ G +   I  PAEY
Sbjct: 3   ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 61
Query: 71  PFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM----PTN 116
           PFKPP     T           ++CL + +   E+W+P+      + +LIA +    P +
Sbjct: 62  PFKPPKITFKTKIYHPNIDEKGQVCLPVISA--ENWKPATKTDQVIQSLIALVNDPQPEH 119
Query: 117 PNGALGSLDYKKEERRALAIKSREAAPKFG 146
           P  A  + +Y K +R+     + E   K+G
Sbjct: 120 PLRADLAEEYSK-DRKKFCKNAEEFTKKYG 148

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 19/150 (12%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A +R+++E++E++     +F ++ ++E N+  WQ  I  P +  ++ G +   I  PAEY
Sbjct: 5   ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 63
Query: 71  PFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM----PTN 116
           PFKPP     T           ++CL + +   E+W+P+      + +LIA +    P +
Sbjct: 64  PFKPPKITFKTKIYHPNIDEKGQVCLPVISA--ENWKPATKTDQVIQSLIALVNDPQPEH 121
Query: 117 PNGALGSLDYKKEERRALAIKSREAAPKFG 146
           P  A  + +Y K +R+     + E   K+G
Sbjct: 122 PLRADLAEEYSK-DRKKFCKNAEEFTKKYG 150

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 21/141 (14%)
Query: 6   YNLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHG 62
           +++ N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y  
Sbjct: 52  FDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 111
Query: 63  RIQLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIA 111
            I++P  YPF PP    +T             ICL I     + W  + ++RT L++L A
Sbjct: 112 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQA 168
Query: 112 FM----PTNPNGALGSLDYKK 128
            +    P +P  A+ +  YK+
Sbjct: 169 LLAAAEPDDPQDAVVANQYKQ 189

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 24/134 (17%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A KR+L+E++++  +     ++ P  E NIF W   I+GP DT +  G+++ +++ P +Y
Sbjct: 5   AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 71  PFKPPSFMLLTT----------KICLSISNHHP-----------EHWQPSWSVRTALVAL 109
           P  PP      +          ++C+SI  H P           E W P  SV   L+++
Sbjct: 65  PLSPPKLTFTPSILHPNIYPNGEVCISIL-HSPGDDPNMYELAEERWSPVQSVEKILLSV 123
Query: 110 IAFMPTNPNGALGS 123
           ++ + + PN   G+
Sbjct: 124 MSML-SEPNIESGA 136

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 19/123 (15%)
Query: 14  KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           KRI++E++ ++ +P+    +    E +I   +    GP  T +EGG +   I++P EYPF
Sbjct: 5   KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 73  KPPSFML-----------LTTKICLSISNHHPEHWQPSWSVRTALVALIAFM----PTNP 117
           KPP               +T  ICL I  +    W P  ++++AL++L A +    P +P
Sbjct: 65  KPPKMQFDTKVYHPNISSVTGAICLDILRN---AWSPVITLKSALISLQALLQSPEPNDP 121
Query: 118 NGA 120
             A
Sbjct: 122 QDA 124

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 19/132 (14%)
Query: 14  KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           KRI++E++ ++ +P+    +    E +I   +    GP  T +EGG +   I++P EYPF
Sbjct: 4   KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 73  KPPSFML-----------LTTKICLSISNHHPEHWQPSWSVRTALVALIAFM----PTNP 117
           KPP               +T  ICL I  +    W P  ++++AL++L A +    P +P
Sbjct: 64  KPPKMQFDTKVYHPNISSVTGAICLDILKN---AWSPVITLKSALISLQALLQSPEPNDP 120
Query: 118 NGALGSLDYKKE 129
             A  +  Y ++
Sbjct: 121 QDAEVAQHYLRD 132

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 21/142 (14%)
Query: 5   RYNLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYH 61
           R ++ N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y 
Sbjct: 15  RGSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQ 74
Query: 62  GRIQLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALI 110
             I++P  YPF PP    +T             ICL I     + W  + ++RT L++L 
Sbjct: 75  LEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQ 131
Query: 111 AFM----PTNPNGALGSLDYKK 128
           A +    P +P  A+ +  YK+
Sbjct: 132 ALLAAAEPDDPQDAVVANQYKQ 153

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 21/139 (15%)
Query: 8   LKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
           + N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y   I
Sbjct: 5   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 64
Query: 65  QLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIAFM 113
           ++P  YPF PP    +T             ICL I     + W  + ++RT L++L A +
Sbjct: 65  KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALL 121
Query: 114 ----PTNPNGALGSLDYKK 128
               P +P  A+ +  YK+
Sbjct: 122 AAAEPDDPQDAVVANQYKQ 140

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 21/140 (15%)
Query: 7   NLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGR 63
           ++ N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y   
Sbjct: 2   SMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 61
Query: 64  IQLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIAF 112
           I++P  YPF PP    +T             ICL I     + W  + ++RT L++L A 
Sbjct: 62  IKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQAL 118
Query: 113 M----PTNPNGALGSLDYKK 128
           +    P +P  A+ +  YK+
Sbjct: 119 LAAAEPDDPQDAVVANQYKQ 138

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 18/97 (18%)
Query: 39  NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTT-----------KICLS 87
           +I  W+  I GP  T +EGG +   I +P +YP+ PP    +T             ICL 
Sbjct: 73  DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLD 132
Query: 88  ISNHHPEHWQPSWSVRTALVALIAFM----PTNPNGA 120
           I  H    W P+ ++RTAL+++ A +    PT+P  A
Sbjct: 133 ILKH---EWSPALTIRTALLSIQAMLADPVPTDPQDA 166

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 21/139 (15%)
Query: 8   LKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
           + N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y   I
Sbjct: 2   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61
Query: 65  QLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIAFM 113
           ++P  YPF PP    +T             ICL I     + W  + ++RT L++L A +
Sbjct: 62  KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALL 118
Query: 114 ----PTNPNGALGSLDYKK 128
               P +P  A+ +  YK+
Sbjct: 119 AAAEPDDPQDAVVANQYKQ 137

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           M  +  NL    ++ + +EV  + ++P D     P EE++ + Q  I GP  T + GG++
Sbjct: 3   MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF 62
Query: 61  HGRIQLPAEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALI 110
             ++ L  ++P  PP    LT           +IC+++       W     +R  L+ + 
Sbjct: 63  RMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLK---RDWTAELGIRHVLLTIK 119
Query: 111 AFMPT-NPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIH 158
             +   NP  AL      +E  R L     E A       R +L+ EIH
Sbjct: 120 CLLIHPNPESAL-----NEEAGRLLLENYEEYA------ARARLLTEIH 157

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 26/126 (20%)
Query: 8   LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
           + +  + RI++E K  +++  SDD ++ P            E ++ +W+  I GP DT +
Sbjct: 3   MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56  EGGIYHGRIQLPAEYPFKPPSFMLL------------TTKICLSISNHHPEHWQPSWSVR 103
           E   +   I++P+ YP  PP    +            T +ICL+I    PE W P W + 
Sbjct: 63  ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK--PEEWTPVWDLL 120
Query: 104 TALVAL 109
             + A+
Sbjct: 121 HCVHAV 126

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 26/126 (20%)
Query: 8   LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
           + +  + RI++E K  +++  SDD ++ P            E ++ +W+  I GP DT +
Sbjct: 3   MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56  EGGIYHGRIQLPAEYPFKPPSFMLL------------TTKICLSISNHHPEHWQPSWSVR 103
           E   +   I++P+ YP  PP    +            T +ICL+I    PE W P W + 
Sbjct: 63  ENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILK--PEEWTPVWDLL 120
Query: 104 TALVAL 109
             + A+
Sbjct: 121 HCVHAV 126

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 26/126 (20%)
Query: 8   LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
           + +  + RI++E K  +++  SDD ++ P            E ++ +W+  I GP DT +
Sbjct: 3   MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56  EGGIYHGRIQLPAEYPFKPPSFMLL------------TTKICLSISNHHPEHWQPSWSVR 103
           E   +   I++P+ YP  PP    +            T +ICL+I    PE W P W + 
Sbjct: 63  ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK--PEEWTPVWDLL 120
Query: 104 TALVAL 109
             + A+
Sbjct: 121 HCVHAV 126

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
           + P  KR+ QE+  +  +      + P  +N+F+W   I G   T +E   Y   ++ P+
Sbjct: 28  RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPS 87
Query: 69  EYPFKPPSFMLLT----------TKICLSISNHHPEHWQPSWSVRTALVALIAFM 113
            YP+  P+   LT            I L I     E W   + VRT L+++ + +
Sbjct: 88  GYPYNAPTVKFLTPCYHPNVDTQGNISLDILK---EKWSALYDVRTILLSIQSLL 139

>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
           +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 12  VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 71
Query: 64  IQLPAEYPFKPPSFMLLTTKICLSISNHHP----------EHWQPSWSVRTALVALIAFM 113
           ++   +YP  PPS   +T      I+N               WQ S+S++  L  L   M
Sbjct: 72  VECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 131
Query: 114 PTNPNGAL 121
            +  N  L
Sbjct: 132 MSKENMKL 139

>pdb|1J74|A Chain A, Crystal Structure Of Mms2 Length = 145

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
           +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 7   VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 66
Query: 64  IQLPAEYPFKPPSFMLLTTKICLSISNHHP----------EHWQPSWSVRTALVALIAFM 113
           ++   +YP  PPS   +T      I+N               WQ S+S++  L  L   M
Sbjct: 67  VECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 126
Query: 114 PTNPNGAL 121
            +  N  L
Sbjct: 127 MSKENMKL 134

>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease Length = 138

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
           +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 2   VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 61
Query: 64  IQLPAEYPFKPPSFMLLTTKICLSISNHHP----------EHWQPSWSVRTALVALIAFM 113
           ++   +YP  PPS   +T      I+N               WQ S+S++  L  L   M
Sbjct: 62  VECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 121
Query: 114 PTNPNGAL 121
            +  N  L
Sbjct: 122 MSKENMKL 129

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYH 61
           N+   A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++ 
Sbjct: 2   NMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 62  GRIQLPAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
            R+    +YP       F+PP F   +  +  +CLSI     + W+P+ +++  L+ +
Sbjct: 62  LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 118

>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 139

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
           +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 1   VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 60
Query: 64  IQLPAEYPFKPPSFMLLTTKICLSISNHHP----------EHWQPSWSVRTALVALIAFM 113
           ++   +YP  PPS   +T      I+N               WQ S+S++  L  L   M
Sbjct: 61  VECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 120
Query: 114 PTNPNGAL 121
            +  N  L
Sbjct: 121 MSKENMKL 128

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 27/153 (17%)
Query: 15  RILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           R+ +E K+ + +    F + P +      ++  W+  I G   T +EGG+Y   +  P E
Sbjct: 14  RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 70  YPFKPPSFMLL----------TTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNG 119
           YP +PP               +  +CLSI N   E W+P+ +++  L+ +   +  +PN 
Sbjct: 74  YPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEE-EGWKPAITIKQILLGIQDLL-DDPNI 131
Query: 120 A---------LGSLDYKKEERRALAIKSREAAP 143
           A         +   D  + E+R  A ++RE AP
Sbjct: 132 ASPAQTEAYTMFKKDKVEYEKRVRA-QARENAP 163

>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 142

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
           +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 4   VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLK 63
Query: 64  IQLPAEYPFKPPSFMLLTTKICLSISNHHP-----------EHWQPSWSVRTALVALIAF 112
           I+   +YP  PP F+   TKI ++  N                WQ S+S++  L  L   
Sbjct: 64  IECGPKYPEAPP-FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRL 122
Query: 113 MPTNPNGAL 121
           M +  N  L
Sbjct: 123 MMSKENMKL 131

>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating Enzyme Variant Uev1a Length = 170

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
           +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 32  VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 91
Query: 64  IQLPAEYPFKPPSFMLLTTKICLSISNHHP-----------EHWQPSWSVRTALVALIAF 112
           I+   +YP  PP F+   TKI ++  N                WQ S+S++  L  L   
Sbjct: 92  IECGPKYPEAPP-FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRL 150
Query: 113 MPTNPNGAL 121
           M +  N  L
Sbjct: 151 MMSKENMKL 159

>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2 Variant 1 (Uev- 1) Length = 160

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
           +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 22  VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 81
Query: 64  IQLPAEYPFKPPSFMLLTTKICLSISNHHP-----------EHWQPSWSVRTALVALIAF 112
           I+   +YP  PP F+   TKI ++  N                WQ S+S++  L  L   
Sbjct: 82  IECGPKYPEAPP-FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRL 140
Query: 113 MPTNPNGAL 121
           M +  N  L
Sbjct: 141 MMSKENMKL 149

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 10  ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 69
Query: 67  PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
             +YP       F+PP F   +  +  +CLSI     + W+P+ +++  L+ +
Sbjct: 70  KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 121

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 7   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 66
Query: 67  PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
             +YP       F+PP F   +  +  +CLSI     + W+P+ +++  L+ +
Sbjct: 67  KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 118

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 5   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67  PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
             +YP       F+PP F   +  +  +CLSI     + W+P+ +++  L+ +
Sbjct: 65  KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 116

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 6   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 65
Query: 67  PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
             +YP       F+PP F   +  +  +CLSI     + W+P+ +++  L+ +
Sbjct: 66  KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 117

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
             +YP       F+PP F   +  +  +CLSI     + W+P+ +++  L+ +
Sbjct: 68  KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 119

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
             +YP       F+PP F   +  +  +CLSI     + W+P+ +++  L+ +
Sbjct: 68  KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 119

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
             +YP       F+PP F   +  +  +CLSI     + W+P+ +++  L+ +
Sbjct: 68  KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 119

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
             +YP       F+PP F   +  +  +CLSI     + W+P+ +++  L+ +
Sbjct: 68  KDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEED-KDWRPAITIKQILLGI 119

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
             +YP       F+PP F   +  +  +CLSI     + W+P+ +++  L+ +
Sbjct: 68  KDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEED-KDWRPAITIKQILLGI 119

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 17/123 (13%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
            ++R+ +E K+ + +    F + P+++     ++ +W+  I G   T + GG+Y   ++ 
Sbjct: 7   CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEY 66
Query: 67  PAEYPFKPPSF----------MLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT- 115
           P EYP KPP            +  +  ICLSI N   + W+P+ +++  ++ +   + + 
Sbjct: 67  PNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED-QDWRPAITLKQIVLGVQDLLDSP 125
Query: 116 NPN 118
           NPN
Sbjct: 126 NPN 128

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 17/123 (13%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
            ++R+ +E K+ + +    F + P+++     ++ +W+  I G   T + GG+Y   ++ 
Sbjct: 5   CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEY 64
Query: 67  PAEYPFKPPSF----------MLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT- 115
           P EYP KPP            +  +  ICLSI N   + W+P+ +++  ++ +   + + 
Sbjct: 65  PNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED-QDWRPAITLKQIVLGVQDLLDSP 123
Query: 116 NPN 118
           NPN
Sbjct: 124 NPN 126

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 15  RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKP 74
           R+ +E+  + + P         ++ + + +  I G  +T +E G++   + +P  YPF+P
Sbjct: 8   RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 75  PSFMLLTT----------KICLSISNHHPE-HWQPSWSVRTALVALIAFMPT-NPNGAL 121
           P    LT           +ICL +    P+  W+PS ++ T L ++   M   NP+  L
Sbjct: 68  PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPL 126

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A  R+++E++++Q  P     +L  ++ N+  W  A+  P    +    ++ RI  P EY
Sbjct: 2   ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEY 60
Query: 71  PFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVAL 109
           PFKPP     T           +ICL I +   E+W+P       L AL
Sbjct: 61  PFKPPMIKFTTKIYHPNVDENGQICLPIISS--ENWKPCTKTCQVLEAL 107

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A  R+++E++++Q  P     +L  ++ N+  W  A+  P    +    ++ RI  P EY
Sbjct: 5   ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEY 63
Query: 71  PFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVAL 109
           PFKPP     T           +ICL I +   E+W+P       L AL
Sbjct: 64  PFKPPMIKFTTKIYHPNVDENGQICLPIISS--ENWKPCTKTCQVLEAL 110

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 18  QEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSF 77
           ++  +++ N      + P+ E++ EW+  I G  ++ ++G ++   I   +EY + PP  
Sbjct: 30  RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVV 89
Query: 78  MLLTTKICLSISNH----------HPEHWQPSWSVRTALVALIAFMPTNP 117
             +T     ++  H          +PE W  ++++ + L+AL   M +NP
Sbjct: 90  KFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLAL-QVMLSNP 138

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 42  EWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL-----------TTKICLSISN 90
           ++     GP  T +EGGI+   + LP +YPF  PS   +           +  +CL + N
Sbjct: 30  DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN 89
Query: 91  HHPEHWQPSWSVRTALVALIAFMPTNPN 118
              + W P +S+       +  + T PN
Sbjct: 90  ---QTWTPLYSLVNVFEVFLPQLLTYPN 114

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 5   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67  PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
             +YP       F+PP F   +  +  + LSI     + W+P+ +++  L+ +
Sbjct: 65  KDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEED-KDWRPAITIKQILLGI 116

>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 3   EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
           + +YNL N A  RI +E+     NP  +        NI  W     G  +T +   +Y  
Sbjct: 13  KTKYNLGN-ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKI 71
Query: 63  RIQLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIA 111
           +I  P  YP KPP    L              ICLS+     + + PS S+   ++++I+
Sbjct: 72  KIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLG---DDYNPSLSISGLILSIIS 128
Query: 112 FM 113
            +
Sbjct: 129 ML 130

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 5   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67  PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
             +YP       F+PP F   +  +  + LSI     + W+P+ +++  L+ +
Sbjct: 65  KDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEED-KDWRPAITIKQILLGI 116

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 5   RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRI 64
           +YN+ N A  RI +E+    +NP  +        NI  W     G  +T +   +Y  +I
Sbjct: 1   KYNMGN-ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKI 59
Query: 65  QLPAEYPFKPPSFMLL-----------TTKICLSISNHHPEHWQPSWSVRTALVALIAFM 113
             P +YP KPP    L              ICLS+     + + PS S+   ++++I+ +
Sbjct: 60  IFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLG---DDYNPSLSISGLVLSIISML 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	4e-54
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	4e-28
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	5e-28
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	7e-28
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	3e-27
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	3e-27
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	1e-26
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	1e-26
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	2e-26
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	3e-26
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	3e-26
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	3e-26
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	4e-26
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	6e-26
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	1e-25
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	1e-25
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	1e-25
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	2e-25
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	2e-25
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	2e-25
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	3e-25
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	3e-25
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	4e-25
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	5e-25
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	5e-25
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	6e-25
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	8e-25
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	9e-25
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	9e-25
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	1e-24
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	1e-24
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	2e-24
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	2e-24
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	3e-24
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	3e-24
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	3e-24
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	5e-24
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	6e-24
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	7e-24
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	2e-23
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	2e-23
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	2e-23
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	3e-23
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	5e-22
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	5e-21
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	8e-21
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	5e-20
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	5e-20
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	8e-20
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	5e-17

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score =  173 bits (440), Expect = 4e-54
 Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 9/143 (6%)

Query: 6   YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
                 A +R+ Q+   ++ +P     + PL  NI EW + +RGP  T +EGG YHG++ 
Sbjct: 9   KRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLI 68

Query: 66  LPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP 117
            P E+PFKPPS  ++T        T++CLSI++ HP+ W P+WSV T L  L++FM    
Sbjct: 69  FPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVE-K 127

Query: 118 NGALGSLDYKKEERRALAIKSRE 140
              LGS++     +R LA++S  
Sbjct: 128 GPTLGSIETSDFTKRQLAVQSLA 150

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  105 bits (264), Expect = 4e-28
 Identities = 25/126 (19%), Positives = 57/126 (45%), Gaps = 15/126 (11%)

Query: 5   RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRI 64
           R ++   A   + ++  +++ N      + P+ E++ EW+  I G  ++ ++G ++   I
Sbjct: 17  RGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTI 76

Query: 65  QLPAEYPFKPPSFMLLTTK------------ICLSISNHHPEHWQPSWSVRTALVALIAF 112
              +EY + PP  +   T              C+     +PE W  ++++ + L+AL   
Sbjct: 77  HFTSEYNYAPPV-VKFITIPFHPNVDPHTGQPCIDFL-DNPEKWNTNYTLSSILLALQVM 134

Query: 113 MPTNPN 118
           + +NP 
Sbjct: 135 L-SNPV 139

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  103 bits (260), Expect = 5e-28
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 5   RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRI 64
           +YN+   A  RI +E+    +NP  +        NI  W     G  +T +   +Y  +I
Sbjct: 1   KYNM-GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKI 59

Query: 65  QLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIAFM 113
             P +YP KPP    L              ICLS+     + + PS S+   ++++I+ +
Sbjct: 60  IFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLG---DDYNPSLSISGLVLSIISML 116

Query: 114 PTNPN 118
            ++  
Sbjct: 117 -SSAK 120

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  104 bits (262), Expect = 7e-28
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 14/119 (11%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           +   KR+ QE++ +  +      + P  +N+F+W   + GP DT +E   Y   ++ P++
Sbjct: 8   HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67

Query: 70  YPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           YP+KPP     T            ICL I     E+W  S+ VRT L++L + +   PN
Sbjct: 68  YPYKPPVVKFTTPCWHPNVDQSGNICLDILK---ENWTASYDVRTILLSLQSLL-GEPN 122

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  102 bits (256), Expect = 3e-27
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 15/120 (12%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
             A  RI +E+     NP  +        NI  W     G  +T +   +Y  +I  P  
Sbjct: 19  GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDN 78

Query: 70  YPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           YP KPP    L              ICLS+     + + PS S+   ++++I+ + ++  
Sbjct: 79  YPLKPPIVYFLQKPPKHTHVYSNGDICLSVLG---DDYNPSLSISGLILSIISML-SSAK 134

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  103 bits (258), Expect = 3e-27
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 14/120 (11%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
           + P  KR+ QE+  +  +      + P  +N+F+W   I G   T +E   Y   ++ P+
Sbjct: 28  RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPS 87

Query: 69  EYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
            YP+  P+   LT            I L I     E W   + VRT L+++ + +   PN
Sbjct: 88  GYPYNAPTVKFLTPCYHPNVDTQGNISLDILK---EKWSALYDVRTILLSIQSLL-GEPN 143

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  101 bits (253), Expect = 1e-26
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 14/118 (11%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           PA KR++++ K +Q +P       P + NI  W   I GP DT ++GG +   +Q   +Y
Sbjct: 4   PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDY 63

Query: 71  PFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           P KPP+   ++            ICL I       W P + V   L ++ + +  +PN
Sbjct: 64  PNKPPTVRFVSRMFHPNIYADGSICLDILQ---NQWSPIYDVAAILTSIQSLL-CDPN 117

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  100 bits (252), Expect = 1e-26
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 20/126 (15%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           K P   R+L+E+++ +     +  S  L +     + +W   I GP  +  E  IY   I
Sbjct: 4   KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSI 63

Query: 65  QLPAEYPFKPPSFMLLTTK------------ICLSISNHHPEHWQPSWSVRTALVALIAF 112
                YP  PP  +   +K            +      H    W+ ++++ T L+ L   
Sbjct: 64  DCGPNYPDSPPK-VTFISKINLPCVNPTTGEVQTDF--HTLRDWKRAYTMETLLLDLRKE 120

Query: 113 MPTNPN 118
           M   P 
Sbjct: 121 M-ATPA 125

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  100 bits (251), Expect = 2e-26
 Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 16/120 (13%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A+KRI +E++++  +P     + P+ +++F WQ  I GP ++ ++GG++   I  P +
Sbjct: 3   HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTD 62

Query: 70  YPFKPPSFMLLTTK-----------ICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           YPFKPP  +  TT+           ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 63  YPFKPPK-VAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 117

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  100 bits (251), Expect = 3e-26
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 14/118 (11%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           PA +R++++ K M+ +      + PL +N+  W   I GP DT +E G +   ++   EY
Sbjct: 4   PARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 63

Query: 71  PFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           P KPP    L+           +ICL I       W P++ V + L ++ +    +PN
Sbjct: 64  PNKPPHVKFLSEMFHPNVYANGEICLDILQ---NRWTPTYDVASILTSIQSLF-NDPN 117

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  100 bits (250), Expect = 3e-26
 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 26/133 (19%)

Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHG 62
            +K P   R+L+E++E Q    D  +S  LE+     +  W   I GP  T +E  IY  
Sbjct: 21  GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSL 80

Query: 63  RIQLPAEYPFKPPSFMLLTTKI---------------CLSISNHHPEHWQPSWSVRTALV 107
           +I+   +YP  PP  +   TKI                +S+       WQ S+S++  L 
Sbjct: 81  KIECGPKYPEAPPF-VRFVTKINMNGVNSSNGVVDPRAISV----LAKWQNSYSIKVVLQ 135

Query: 108 ALIAFM--PTNPN 118
            L   M    N  
Sbjct: 136 ELRRLMMSKENMK 148

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  100 bits (251), Expect = 3e-26
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 27/133 (20%)

Query: 10  NPAVKRILQEVKEMQ---------SNPSDDFMSLPL---EENIFEWQFAIRGPGDTEFEG 57
           +  + RI++E K +          +NP    +       E ++ +W+  I GP DT +E 
Sbjct: 5   DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYEN 64

Query: 58  GIYHGRIQLPAEYPFKPPSFMLLTTK------------ICLSISNHHPEHWQPSWSVRTA 105
             +   I++P+ YP  PP    +               ICL+I    PE W P W +   
Sbjct: 65  HQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNIL--KPEEWTPVWDLLHC 122

Query: 106 LVALIAFMPTNPN 118
           + A+   +   P 
Sbjct: 123 VHAVWRLL-REPV 134

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score = 99.6 bits (249), Expect = 4e-26
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 16/129 (12%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           M  +  NL    ++ + +EV  + ++P D     P EE++ + Q  I GP  T + GG++
Sbjct: 3   MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF 62

Query: 61  HGRIQLPAEYPFKPPSFMLLTTK-----------ICLSISNHHPEHWQPSWSVRTALVAL 109
             ++ L  ++P  PP      TK           IC+++       W     +R  L+ +
Sbjct: 63  RMKLLLGKDFPASPPK-GYFLTKIFHPNVGANGEICVNVLK---RDWTAELGIRHVLLTI 118

Query: 110 IAFMPTNPN 118
              +  +PN
Sbjct: 119 KCLL-IHPN 126

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 99.8 bits (249), Expect = 6e-26
 Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 26/134 (19%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           K P   R+L+E++E Q    D  +S  LE+     +  W   I GP  T +E  IY  +I
Sbjct: 33  KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 92

Query: 65  QLPAEYPFKPPSFMLLTTKI---------------CLSISNHHPEHWQPSWSVRTALVAL 109
           +   +YP  PP  +   TKI                +S+       WQ S+S++  L  L
Sbjct: 93  ECGPKYPEAPPF-VRFVTKINMNGVNSSNGVVDPRAISVLA----KWQNSYSIKVVLQEL 147

Query: 110 IAFM--PTNPNGAL 121
              M    N     
Sbjct: 148 RRLMMSKENMKLPQ 161

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 99.0 bits (247), Expect = 1e-25
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 15/122 (12%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
              K +++EV E+++N          + N          P +  ++GG +    ++P  Y
Sbjct: 14  VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAY 73

Query: 71  PFKPPSFMLLTTKI-----------CLSI---SNHHPEHWQPSWSVRTALVALIAFMPTN 116
              PP  +   TKI           CLS+    +     W P+ +++  +  L +     
Sbjct: 74  NMVPPK-VKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDL 132

Query: 117 PN 118
            N
Sbjct: 133 LN 134

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  100 bits (250), Expect = 1e-25
 Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 17/129 (13%)

Query: 2   AEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYH 61
            E+ Y   +  + R+ +E+K++++    +  +   + N FEW   I+GP  T +EGG + 
Sbjct: 14  RENLYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFT 73

Query: 62  GRIQLPAEYPFKPPSFMLLTTK------------ICLSISNHHPEHWQPSWSVRTALVAL 109
             I +P +YP+ PP  +   TK            ICL +       W P+ ++RTAL+++
Sbjct: 74  LAITIPNDYPYNPPK-IKFVTKIWHPNISSQTGAICLDVLK---NEWSPALTIRTALLSI 129

Query: 110 IAFMPTNPN 118
            A + ++P 
Sbjct: 130 QALL-SDPQ 137

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 98.5 bits (246), Expect = 1e-25
 Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 16/120 (13%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +
Sbjct: 18  SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 77

Query: 70  YPFKPPSFMLLTTK-----------ICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           YPFKPP  +  TT+           ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 78  YPFKPPK-VAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 132

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 98.1 bits (245), Expect = 2e-25
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 14/118 (11%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
              +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EY
Sbjct: 5   GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 64

Query: 71  PFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           P   P    +T           +ICL I     + W P+  +RT L+++ A + + PN
Sbjct: 65  PMAAPKVRFMTKIYHPNVDKLGRICLDILK---DKWSPALQIRTVLLSIQALL-SAPN 118

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 98.5 bits (246), Expect = 2e-25
 Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 16/118 (13%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P  +  + P+ +++F WQ  I GP D+ + GG++   I  P++YP
Sbjct: 22  ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81

Query: 72  FKPPSFMLLTTK-----------ICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP  +  TTK           ICL I     + W P+ ++   L+++ + + T+PN
Sbjct: 82  FKPPK-VNFTTKIYHPNINSQGAICLDILK---DQWSPALTISKVLLSISSLL-TDPN 134

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 98.2 bits (245), Expect = 2e-25
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 14/119 (11%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
              R+ +E+  + + P         ++ + + +  I G  +T +E G++   + +P  YP
Sbjct: 5   RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYP 64

Query: 72  FKPPSFMLLTTK-----------ICLSI-SNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           F+PP  +   T            ICL +        W+PS ++ T L ++   M + PN
Sbjct: 65  FEPPQ-IRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLM-SEPN 121

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 97.7 bits (244), Expect = 3e-25
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 16/117 (13%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
             + ++  +        +       +  ++     GP  T +EGGI+   + LP +YPF 
Sbjct: 2   TSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFA 61

Query: 74  PPSFMLLTTK------------ICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
            PS +    K            +CL + N   + W P +S+       +  + T PN
Sbjct: 62  SPS-IGFMNKLLHPNVDEASGSVCLDVIN---QTWTPLYSLVNVFEVFLPQLLTYPN 114

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score = 97.8 bits (244), Expect = 3e-25
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 17/124 (13%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
             A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+
Sbjct: 6   GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65

Query: 65  QLPAEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMP 114
               +YP  PP                  +CLSI     + W+P+ +++  L+ +   + 
Sbjct: 66  LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL-EEDKDWRPAITIKQILLGIQELL- 123

Query: 115 TNPN 118
             PN
Sbjct: 124 NEPN 127

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 97.4 bits (243), Expect = 4e-25
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 18/123 (14%)

Query: 10  NPAVKRILQEVKEMQSNPSD---DFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           N AV+RI +E KE+  +            ++EN  E +  I GP DT +EGG Y   I++
Sbjct: 7   NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 66

Query: 67  PAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT 115
           P  YPF PP    +T             ICL I     + W  + ++RT L++L A +  
Sbjct: 67  PETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALL-A 122

Query: 116 NPN 118
              
Sbjct: 123 AAE 125

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 98.3 bits (245), Expect = 5e-25
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 27/173 (15%)

Query: 10  NPAVKRILQEVKEMQSNPSD---DFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           N AV+RI +E KE+  +            ++EN  E +  I GP DT +EGG Y   I++
Sbjct: 4   NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 63

Query: 67  PAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT 115
           P  YPF PP    +T             ICL I     + W  + ++RT L++L A +  
Sbjct: 64  PETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALL-A 119

Query: 116 NPN---------GALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHE 159
                             + +  ++ A       A     +PE  K I+ +  
Sbjct: 120 AAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCA 172

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 96.5 bits (241), Expect = 5e-25
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 16/116 (13%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI +E + + + P    M++P+ EN   +   I GP  T +EGG Y   + LP +YP +
Sbjct: 4   RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63

Query: 74  PPSFMLLTTK-----------ICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           PP  +   TK           ICL I     + W P+  +RT L+++ A + ++P 
Sbjct: 64  PPK-VRFLTKIYHPNIDKLGRICLDILK---DKWSPALQIRTVLLSIQALL-SSPE 114

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 96.6 bits (241), Expect = 6e-25
 Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 14/117 (11%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
             KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP
Sbjct: 6   LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYP 65

Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
            + P    LT           +ICL +      +W P+  +RT L+++ A +  +PN
Sbjct: 66  MEAPKVRFLTKIYHPNIDRLGRICLDVLK---TNWSPALQIRTVLLSIQALL-ASPN 118

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 96.7 bits (241), Expect = 8e-25
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 22/128 (17%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +Y
Sbjct: 4   ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63

Query: 71  PFKPPSFMLLTT----------KICLSI----------SNHHPEHWQPSWSVRTALVALI 110
           P  PP                 ++C+SI               E W P  SV   L++++
Sbjct: 64  PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 123

Query: 111 AFMPTNPN 118
           + +   PN
Sbjct: 124 SML-AEPN 130

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score = 96.2 bits (240), Expect = 9e-25
 Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           +  ++R+ +E K+ + +    F + P+++     ++ +W+  I G   T + GG+Y   +
Sbjct: 3   SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITV 62

Query: 65  QLPAEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMP 114
           + P EYP KPP                  ICLSI  +  + W+P+ +++  ++ +   + 
Sbjct: 63  EYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSIL-NEDQDWRPAITLKQIVLGVQDLL- 120

Query: 115 TNPN 118
            +PN
Sbjct: 121 DSPN 124

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 96.2 bits (240), Expect = 9e-25
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 18/120 (15%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
             KRI++E++ ++ +P+       + E +I   +    GP  T +EGG +   I++P EY
Sbjct: 2   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 71  PFKPPSFMLLTTK------------ICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           PFKPP  M   TK            ICL I       W P  ++++AL++L A +  +P 
Sbjct: 62  PFKPPK-MQFDTKVYHPNISSVTGAICLDILK---NAWSPVITLKSALISLQALL-QSPE 116

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 96.7 bits (241), Expect = 1e-24
 Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 22/129 (17%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
                + +++ E+  NP + F +  +++ +++ W+  I GP DT +EGG++   +  P +
Sbjct: 17  RGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKD 76

Query: 70  YPFKPPSFMLLTT----------KICLSI----------SNHHPEHWQPSWSVRTALVAL 109
           YP +PP    +T            +C+SI               E W P  +V T ++++
Sbjct: 77  YPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISV 136

Query: 110 IAFMPTNPN 118
           I+ +  +PN
Sbjct: 137 ISML-ADPN 144

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score = 96.2 bits (240), Expect = 1e-24
 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 17/124 (13%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           +    R+ +E K+ + +    F + P +      ++  W+  I G   T +EGG+Y   +
Sbjct: 9   SLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTM 68

Query: 65  QLPAEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMP 114
             P EYP +PP                  +CLSI  +  E W+P+ +++  L+ +   + 
Sbjct: 69  AFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSIL-NEEEGWKPAITIKQILLGIQDLL- 126

Query: 115 TNPN 118
            +PN
Sbjct: 127 DDPN 130

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 95.1 bits (237), Expect = 2e-24
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 17/117 (14%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLP--LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
              KR+ +E+  +Q++P          ++ +I +W   + G   T +EG  +    +  +
Sbjct: 22  SMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSS 81

Query: 69  EYPFKPPSFMLLTT------------KICLSISNHHPEHWQPSWSVRTALVALIAFM 113
            YPF  P  M                 ICLSI     E W P+ SV++  +++I+ +
Sbjct: 82  RYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT---EDWSPALSVQSVCLSIISML 135

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 97.7 bits (243), Expect = 2e-24
 Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 27/191 (14%)

Query: 7   NLKNPAVKRILQEVKEMQSNPSD---DFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           ++ N AV+RI +E KE+  +            ++EN  E +  I GP DT +EGG Y   
Sbjct: 53  DMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 112

Query: 64  IQLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIAF 112
           I++P  YPF PP    +T             ICL I     + W  + ++RT L++L A 
Sbjct: 113 IKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQAL 169

Query: 113 MPTNPN---------GALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLS 163
           +                    + +  ++ A       A     +PE  K I+ +      
Sbjct: 170 L-AAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAAGFD 228

Query: 164 KAPPVPQLSTC 174
           +   +  LS+ 
Sbjct: 229 RNAVIVALSSK 239

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 96.0 bits (239), Expect = 3e-24
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 22/129 (17%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
            + K +L E+K +Q  P + F    + E +++ W+ AI GP +T +EGG +  R++ P +
Sbjct: 7   SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 66

Query: 70  YPFKPPSFMLLTT----------KICLSI----------SNHHPEHWQPSWSVRTALVAL 109
           YP+ PP+F  LT            +C+SI               E W P+ +VRT L+++
Sbjct: 67  YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 126

Query: 110 IAFMPTNPN 118
           I+ +   PN
Sbjct: 127 ISLL-NEPN 134

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =   99 bits (249), Expect = 3e-24
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 16/118 (13%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63

Query: 72  FKPPSFMLLTTK-----------ICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FKPP  +  TT+           I L I       W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPK-VAFTTRIYHPNINSNGSISLDILR---SQWSPALTISKVLLSICSLL-CDPN 116

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 96.0 bits (239), Expect = 3e-24
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 14/119 (11%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + + KRI +E+ ++  +P  +  + P  +NI+EW+  I GP  + +EGG++   I    E
Sbjct: 47  STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE 106

Query: 70  YPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           YPFKPP     T            ICL I     ++W P+ ++   L+++ + + T+ N
Sbjct: 107 YPFKPPKVTFRTRIYHCNINSQGVICLDILK---DNWSPALTISKVLLSICSLL-TDCN 161

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 94.3 bits (235), Expect = 5e-24
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 17/129 (13%)

Query: 5   RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIY 60
            +    P   R+L E++  Q     + +S  LE      +  W   I G   T FE  IY
Sbjct: 15  YFQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIY 74

Query: 61  HGRIQLPAEYPFKPPSFMLLTTK-----------ICLSISNHHPEHWQPSWSVRTALVAL 109
              I     YP  PP+ +   TK           +  +   H  ++W  ++++ T L++L
Sbjct: 75  SLTIFCDDNYPDSPPT-VKFDTKIEMSCVDNCGRVIKNNL-HILKNWNRNYTIETILISL 132

Query: 110 IAFMPTNPN 118
              M ++ N
Sbjct: 133 RQEMLSSAN 141

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 93.9 bits (234), Expect = 6e-24
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 17/119 (14%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A +R+++E++E++     +F ++ + E N+  WQ  I  P +  ++ G +   I  PAEY
Sbjct: 3   ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 61

Query: 71  PFKPPSFMLLTTKI-----------CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           PFKPP  +   TKI           CL +     E+W+P+      + +LIA +  +P 
Sbjct: 62  PFKPPK-ITFKTKIYHPNIDEKGQVCLPVI--SAENWKPATKTDQVIQSLIALV-NDPQ 116

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 94.3 bits (235), Expect = 7e-24
 Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 22/130 (16%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
             A KR+L+E++++  +     ++ P  E NIF W   I+GP DT +  G+++ +++ P 
Sbjct: 3   KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 62

Query: 69  EYPFKPPSFMLLTT----------KICLSI----------SNHHPEHWQPSWSVRTALVA 108
           +YP  PP      +          ++C+SI               E W P  SV   L++
Sbjct: 63  DYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS 122

Query: 109 LIAFMPTNPN 118
           +++ + + PN
Sbjct: 123 VMSML-SEPN 131

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 94.5 bits (235), Expect = 2e-23
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 18/120 (15%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
             KRI++E++ ++ +P+       + E +I   +    GP  T +EGG +   I++P EY
Sbjct: 3   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 62

Query: 71  PFKPPSFMLLTTK------------ICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           PFKPP  M   TK            ICL I       W P  ++++AL++L A +  +P 
Sbjct: 63  PFKPPK-MQFDTKVYHPNISSVTGAICLDILR---NAWSPVITLKSALISLQALL-QSPE 117

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 93.6 bits (233), Expect = 2e-23
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 20/120 (16%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           P  +R+  +V ++  +  +      +   + E+     GP  T +EGG++  R+ LP +Y
Sbjct: 25  PGKRRMDTDVIKLIESKHEV----TILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKY 80

Query: 71  PFKPPSFMLLTTK------------ICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           PFK PS +    K            +CL + N   + W   + +     + +  +   PN
Sbjct: 81  PFKSPS-IGFMNKIFHPNIDEASGTVCLDVIN---QTWTALYDLTNIFESFLPQLLAYPN 136

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 92.7 bits (231), Expect = 2e-23
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A  R+++E++++Q  P     +L  ++ N+  W  A+  P    +    ++ RI  P EY
Sbjct: 5   ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEY 63

Query: 71  PFKPPSFMLLTTKI-----------CLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           PFKPP  +  TTKI           CL I     E+W+P       L AL   +   PN
Sbjct: 64  PFKPPM-IKFTTKIYHPNVDENGQICLPII--SSENWKPCTKTCQVLEALNVLV-NRPN 118

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 92.4 bits (230), Expect = 3e-23
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 20/119 (16%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           + +R   +   + ++       +   + + E+    +GP  T +E G +   +QLP++YP
Sbjct: 13  SNRRREMDYMRLCNST----RKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYP 68

Query: 72  FKPPSFMLLTTK------------ICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           FK PS +    +            +CL + N   + W P + +       +  +   PN
Sbjct: 69  FKSPS-IGFCNRILHPNVDERSGSVCLDVIN---QTWTPMYQLENIFDVFLPQLLRYPN 123

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 90.2 bits (224), Expect = 5e-22
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 28/142 (19%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQ-------------SNPSDDFMSLPLEENIFEWQFAI 47
           MA  +         R+L+E+ ++Q              + S    +  +  +I  W+  I
Sbjct: 22  MATAQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFI 81

Query: 48  RGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHW 96
            GP  T +EGG +   I +P +YP+ PP    +T             ICL I       W
Sbjct: 82  AGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILK---HEW 138

Query: 97  QPSWSVRTALVALIAFMPTNPN 118
            P+ ++RTAL+++ A +  +P 
Sbjct: 139 SPALTIRTALLSIQAML-ADPV 159

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 86.6 bits (215), Expect = 5e-21
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 16/119 (13%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A  RI +++ E+    + D  S    +++  ++  I  P +  ++ G +    ++   
Sbjct: 5   SAAQLRIQKDINELNLPKTCDI-SFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 62

Query: 70  YPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           YP  PP     T            +CL+I     E W+P  ++ + +  L       PN
Sbjct: 63  YPHDPPKVKCETMVYHPNIDLEGNVCLNILR---EDWKPVLTINSIIYGLQYLF-LEPN 117

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 86.7 bits (215), Expect = 8e-21
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 18/123 (14%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFA----IRGPGDTEFEGGIYHGRIQ 65
           + A  R+ +++  +   P+     +   ++    Q      I  P +  +  G  +  + 
Sbjct: 28  SAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLD 87

Query: 66  LPAEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT 115
               YP +PP  + L             +CL+I     E W P+  +++ +  L+     
Sbjct: 88  FNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILR---EDWSPALDLQSIITGLLFLF-L 143

Query: 116 NPN 118
            PN
Sbjct: 144 EPN 146

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 84.0 bits (208), Expect = 5e-20
 Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 31/137 (22%)

Query: 9   KNPAVKRILQEVKEMQ------------SNPSDDFMSLPLEENIFEWQFAIRGPGDTEF- 55
           KN + KRI++++K +              +P    +     + I+ W   ++ P D+ + 
Sbjct: 6   KNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYG 65

Query: 56  -EGGIYHGRIQLPAEYPFKPPSFMLLTTK-----------ICLSISNHHPEHWQPSWSVR 103
             G  Y   +    +YP +PP+ +   T            IC  + N   + W P     
Sbjct: 66  GAGNTYQLSVLFSDDYPHEPPT-VRFVTPVYSPLVTGEGGICDRMVN---DFWTPDQHAS 121

Query: 104 TALVALIA--FMPTNPN 118
             +  ++   F      
Sbjct: 122 DVIKLVLDRVFSQYKSR 138

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 84.3 bits (209), Expect = 5e-20
 Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 16/119 (13%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A  RI +++ E+    +   +S    +++  ++  I  P +  ++ G +    ++   
Sbjct: 25  SAAQLRIQKDINELNLPKTC-DISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 82

Query: 70  YPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           YP  PP     T            + L+I     E W+P  ++ + +  L       PN
Sbjct: 83  YPHDPPKVKCETMVYHPNIDLEGNVALNILR---EDWKPVLTINSIIYGLQYLF-LEPN 137

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 86.7 bits (214), Expect = 8e-20
 Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 23/133 (17%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPL----EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
                +R+ QE   + ++      S       EE +   +  I GP DT +  G +   +
Sbjct: 74  SAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDV 133

Query: 65  QLPAEYPFKPPSFMLLTT---------------KICLSI----SNHHPEHWQPSWSVRTA 105
             P +YP  PP   L TT               K+CLSI         E W P  S    
Sbjct: 134 YFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQ 193

Query: 106 LVALIAFMPTNPN 118
           ++  +  +     
Sbjct: 194 VLVSVQSLILVAE 206

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 76.1 bits (187), Expect = 5e-17
 Identities = 14/135 (10%), Positives = 48/135 (35%), Gaps = 29/135 (21%)

Query: 10  NPAVKRILQEVKEMQSNPSDD---FMSLPLEENIFEWQFAIRG-PGDTEFEGGIYHG--- 62
             A  R+++E++++  + S     +    + +++++W   ++    D+     +      
Sbjct: 26  VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEK 85

Query: 63  --------RIQLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVR 103
                          +PF PP   ++              +C+ +     + W  ++S+ 
Sbjct: 86  EGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELL--TKQGWSSAYSIE 143

Query: 104 TALVALIAFMPTNPN 118
           + ++ + A +     
Sbjct: 144 SVIMQINATL-VKGK 157

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	99.98
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	99.98
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	99.97
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	99.97
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	99.97
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	99.97
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	99.97
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	99.96
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	99.96
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.95
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	99.95
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	99.95
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.79
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.37
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.29
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	98.87
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	94.75
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	94.24
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	94.18
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	91.04
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	90.25
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	89.79
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	86.16
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	82.63

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.8e-38  Score=271.99  Aligned_cols=143  Identities=25%  Similarity=0.512  Sum_probs=129.8

Q ss_pred             CCCcCCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus         1 ma~~~~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      |+....+||..+.+||++|+++|++++++||++.+.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|+
T Consensus         3 ~~~~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   82 (158)
T 1zdn_A            3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFL   82 (158)
T ss_dssp             -----CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             ccccccccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEec
Confidence            66667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhC
Q 022719           81 T----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  146 (293)
Q Consensus        81 T----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya  146 (293)
                      |          |.||+++|+   +.|+|.++|++||.+|++||.+ ||+++++  |+.++.+|++.|.++||+|+++|+
T Consensus        83 t~i~HPnv~~~G~iCl~iL~---~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A  158 (158)
T 1zdn_A           83 TKIFHPNVGANGEICVNVLK---RDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  158 (158)
T ss_dssp             SCCCCTTBCTTSBBCHHHHT---TTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             cCcccCCCCCCCEEehhhcC---CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9          999999997   7899999999999999999954 6666554  466778999999999999999986

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-37  Score=266.25  Aligned_cols=138  Identities=27%  Similarity=0.520  Sum_probs=127.9

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec------
Q 022719            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT------   81 (293)
Q Consensus         8 ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T------   81 (293)
                      ||..+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|      
T Consensus         2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   81 (154)
T 2c2v_B            2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN   81 (154)
T ss_dssp             CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             ----ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719           82 ----TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  148 (293)
Q Consensus        82 ----G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~  148 (293)
                          |.|||++|+   +.|+|+++|++||.+|++||.+ ||+++++  ++.++.+|+++|.++||+|+++|+..
T Consensus        82 v~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~  152 (154)
T 2c2v_B           82 VDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN  152 (154)
T ss_dssp             BCTTCBBCCHHHH---TSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CccCCeEEchhcc---CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence                999999997   7899999999999999999965 7777766  56777899999999999999999864

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=2.3e-37  Score=263.40  Aligned_cols=138  Identities=28%  Similarity=0.608  Sum_probs=128.3

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec------
Q 022719            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT------   81 (293)
Q Consensus         8 ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T------   81 (293)
                      ||+.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|      
T Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   80 (152)
T 2aak_A            1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN   80 (152)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCC
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             ----ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719           82 ----TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  148 (293)
Q Consensus        82 ----G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~  148 (293)
                          |.||+++|+   +.|+|+++|++||.+|++||.+ +|+++++  |+.++.+|++.|.++||+|+++|+..
T Consensus        81 v~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~  151 (152)
T 2aak_A           81 IYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA  151 (152)
T ss_dssp             BCTTSBBCCGGGT---TSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred             CCCCCEEechhhc---CCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence                999999997   7899999999999999999965 6666654  46677899999999999999999864

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-37  Score=270.15  Aligned_cols=140  Identities=26%  Similarity=0.567  Sum_probs=129.1

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec------
Q 022719            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT------   81 (293)
Q Consensus         8 ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T------   81 (293)
                      ||+.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|      
T Consensus         1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN   80 (169)
T 1ayz_A            1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN   80 (169)
T ss_dssp             -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCC
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             ----ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCChhH
Q 022719           82 ----TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPER  150 (293)
Q Consensus        82 ----G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~~~  150 (293)
                          |.|||++|+   +.|+|+++|++||.+|++||.+ +|+++++  |+.++.++++.|.++||+|+++|+....
T Consensus        81 I~~~G~ICl~iL~---~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~~~  153 (169)
T 1ayz_A           81 VYANGEICLDILQ---NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDM  153 (169)
T ss_dssp             BCTTSBBCCGGGT---TTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCeEeehhhc---cCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCCCc
Confidence                999999997   7899999999999999999965 6666655  4667789999999999999999986543

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=2.7e-37  Score=262.81  Aligned_cols=136  Identities=26%  Similarity=0.656  Sum_probs=127.5

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-------
Q 022719            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-------   81 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-------   81 (293)
                      +..+.+||++|+++|+++++.||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|       
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   81 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI   81 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999999       


Q ss_pred             ---ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 ---TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 ---G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                         |.||+++|+   ++|+|.++|++||.+|++||.+ ||+++++  ++.++.+|++.|.++||+|+++|+.
T Consensus        82 ~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~  150 (151)
T 4gpr_A           82 NKNGVICLDILK---DQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYAR  150 (151)
T ss_dssp             CTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCEEEccccc---CCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence               999999998   8999999999999999999965 6777665  4677789999999999999999986

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.5e-37  Score=266.15  Aligned_cols=141  Identities=23%  Similarity=0.465  Sum_probs=129.9

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-------
Q 022719            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-------   81 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-------   81 (293)
                      |..+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|       
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv   81 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI   81 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence            5678999999999999999999999999999999999999999999999999999999999999999999999       


Q ss_pred             ---ccceeccCCCCC-CCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCChh
Q 022719           82 ---TKICLSISNHHP-EHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPE  149 (293)
Q Consensus        82 ---G~ICLsiL~~~p-e~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~~  149 (293)
                         |.|||++|+.|+ +.|+|+++|++||.+|++||.+ +|+++++  |+.++.+|++.|.++||+|+++|+...
T Consensus        82 ~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~  156 (169)
T 1yh2_A           82 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQK  156 (169)
T ss_dssp             CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC
T ss_pred             CcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Confidence               999999998665 7899999999999999999955 6666654  456677999999999999999999754

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=6.5e-37  Score=260.04  Aligned_cols=136  Identities=29%  Similarity=0.647  Sum_probs=126.3

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-------
Q 022719            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-------   81 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-------   81 (293)
                      |..+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|       
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   81 (150)
T 1z2u_A            2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI   81 (150)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcC
Confidence            5678999999999999999999999999999999999999999999999999999999999999999999999       


Q ss_pred             ---ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 ---TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 ---G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                         |.||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  ++.++.+|++.|.++||+|+++|+.
T Consensus        82 ~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~  150 (150)
T 1z2u_A           82 NSNGSICLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM  150 (150)
T ss_dssp             CTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCeEeecccc---CCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence               999999998   8899999999999999999954 6666654  4567789999999999999999974

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=6.7e-37  Score=264.56  Aligned_cols=138  Identities=29%  Similarity=0.643  Sum_probs=126.2

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----
Q 022719            6 YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----   81 (293)
Q Consensus         6 ~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----   81 (293)
                      ...++.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|    
T Consensus        16 ~~~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H   95 (166)
T 2ayv_A           16 NLYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYH   95 (166)
T ss_dssp             ---CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred             cccCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcC
Confidence            3456678999999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             ------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhC
Q 022719           82 ------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  146 (293)
Q Consensus        82 ------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya  146 (293)
                            |.|||++|+   +.|+|+++|++||.+|++||.+ ||+++++  ++.++.+|++.|.++||+|+++|+
T Consensus        96 PNI~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A  166 (166)
T 2ayv_A           96 PNINSQGAICLDILK---DQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA  166 (166)
T ss_dssp             TTBCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CcCCCCCeEEccccc---ccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence                  999999998   8999999999999999999955 6666655  456778999999999999999986

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=4.7e-37  Score=262.62  Aligned_cols=141  Identities=27%  Similarity=0.517  Sum_probs=128.4

Q ss_pred             CCCcCCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus         1 ma~~~~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      |+  ...|+..+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus         1 m~--~~~~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   78 (156)
T 2e2c_A            1 MT--TSKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFT   78 (156)
T ss_dssp             CC--CCCSCCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             CC--ccccchHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEe
Confidence            66  3446677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           81 T----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        81 T----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                      |          |.|||++|+   +.|+|+++|++||.+|++||.+ ||+++++  |+.++ +|+++|.++||+|+++|++
T Consensus        79 t~i~HPnv~~~G~iCl~iL~---~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~  154 (156)
T 2e2c_A           79 TPCWHPNVDQSGNICLDILK---ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS  154 (156)
T ss_dssp             SCCCBTTBCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCCccCceEECcccc---ccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence            9          999999997   8899999999999999999965 6666654  45666 7999999999999999864

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=1.3e-36  Score=262.47  Aligned_cols=138  Identities=29%  Similarity=0.635  Sum_probs=127.4

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-----
Q 022719            7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-----   81 (293)
Q Consensus         7 ~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-----   81 (293)
                      ...+.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|     
T Consensus        15 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HP   94 (165)
T 2c4o_A           15 PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP   94 (165)
T ss_dssp             -CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBT
T ss_pred             cCCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCC
Confidence            456779999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             -----ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 -----TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 -----G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                           |.||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  ++.++.+|+++|.++||+|+++|+.
T Consensus        95 nV~~~G~ICl~iL~---~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~  165 (165)
T 2c4o_A           95 NINSNGSICLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM  165 (165)
T ss_dssp             TBCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             cCCCCCeEeehhhc---CCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                 999999998   8999999999999999999954 6666654  4567789999999999999999974

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=1.3e-36  Score=260.68  Aligned_cols=138  Identities=30%  Similarity=0.542  Sum_probs=127.5

Q ss_pred             CCChHHHHHHHHHHHHHhhC---CCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--
Q 022719            7 NLKNPAVKRILQEVKEMQSN---PSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--   81 (293)
Q Consensus         7 ~ms~~a~kRL~kElk~L~~~---p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--   81 (293)
                      .|++.+.+||++|+++|+++   ++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|  
T Consensus         4 ~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   83 (159)
T 2bep_A            4 AMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI   83 (159)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             cchHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCC
Confidence            48899999999999999985   5789999999999999999999999999999999999999999999999999999  


Q ss_pred             ---------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 ---------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 ---------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                               |.|||++|+   +.|+|+++|++||.+|++||.+ +|+++++  ++.++.+|++.|.++||+|+++|+.
T Consensus        84 ~HPni~~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~  158 (159)
T 2bep_A           84 WHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG  158 (159)
T ss_dssp             CBTTBCTTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CccCCCCCCCEEeChhhh---ccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence                     999999998   7899999999999999999954 6666654  4567779999999999999999985

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=7.1e-37  Score=270.40  Aligned_cols=144  Identities=25%  Similarity=0.478  Sum_probs=122.6

Q ss_pred             CCCcCCCCChHHHHHHHHHHHHHhhCCC-------------CCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCC
Q 022719            1 MAEDRYNLKNPAVKRILQEVKEMQSNPS-------------DDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP   67 (293)
Q Consensus         1 ma~~~~~ms~~a~kRL~kElk~L~~~p~-------------~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP   67 (293)
                      ||..+.+.+..+.+||++|+++|+++++             .||++.+.++|+++|+++|.||++|||+||+|+|+|.||
T Consensus        22 m~~~~~~~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp  101 (193)
T 2f4z_A           22 MATAQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIP  101 (193)
T ss_dssp             ----------CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECC
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECC
Confidence            6666666677789999999999999987             799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCeeeeec-----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHH
Q 022719           68 AEYPFKPPSFMLLT-----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRA  133 (293)
Q Consensus        68 ~dYP~~PP~v~F~T-----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~  133 (293)
                      ++||++||+|+|+|           |.|||++|+   +.|+|+++|++||++|++||.+ +|+++++  ++.+|.+|++.
T Consensus       102 ~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~  178 (193)
T 2f4z_A          102 PDYPYNPPKMKFVTKIWHPNISSQTGAICLDILK---HEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPL  178 (193)
T ss_dssp             TTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGT---TTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHH
T ss_pred             CcCCCCCCeEEEecCCccCCCcCCCCEEECcccc---ccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHH
Confidence            99999999999999           999999998   7899999999999999999955 6666655  46777799999


Q ss_pred             HHHHHHHHHhhhCC
Q 022719          134 LAIKSREAAPKFGT  147 (293)
Q Consensus       134 f~~kare~~~kya~  147 (293)
                      |.++||+|+++|+.
T Consensus       179 f~~~ar~~t~~ya~  192 (193)
T 2f4z_A          179 FVQTAKLWTETFAK  192 (193)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHcc
Confidence            99999999999985

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=9.7e-37  Score=262.74  Aligned_cols=140  Identities=24%  Similarity=0.544  Sum_probs=125.3

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCC-CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-----
Q 022719            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLE-ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-----   81 (293)
Q Consensus         8 ms~~a~kRL~kElk~L~~~p~~gi~~~p~~-~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-----   81 (293)
                      |++.+.+||++|+++|++++++||++.+.+ +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|     
T Consensus         1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   80 (165)
T 2ucz_A            1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP   80 (165)
T ss_dssp             -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccC
Confidence            678899999999999999999999999875 79999999999999999999999999999999999999999999     


Q ss_pred             -----ccceeccCCC----------CCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHh
Q 022719           82 -----TKICLSISNH----------HPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAP  143 (293)
Q Consensus        82 -----G~ICLsiL~~----------~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~  143 (293)
                           |+|||++|+.          +.+.|+|+++|++||.+|++||.+ ||+++++  |+.++.+|+++|.++||+|++
T Consensus        81 Nv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~  160 (165)
T 2ucz_A           81 NIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSIL  160 (165)
T ss_dssp             TBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             CCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHH
Confidence                 9999999942          147899999999999999999954 5555444  456677999999999999999


Q ss_pred             hhCC
Q 022719          144 KFGT  147 (293)
Q Consensus       144 kya~  147 (293)
                      +|..
T Consensus       161 ~~~~  164 (165)
T 2ucz_A          161 KSLG  164 (165)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            9864

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=1.9e-36  Score=257.00  Aligned_cols=133  Identities=29%  Similarity=0.632  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------c
Q 022719           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------T   82 (293)
Q Consensus        13 ~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------G   82 (293)
                      .+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|          |
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   82 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG   82 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCC
Confidence            589999999999999999999999999999999999999999999999999999999999999999999          9


Q ss_pred             cceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719           83 KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  148 (293)
Q Consensus        83 ~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~  148 (293)
                      +||+++|+   +.|+|+++|++||.+|++||.+ +|+++++  ++.++.+|++.|.++||+|+++|+..
T Consensus        83 ~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~  148 (149)
T 2r0j_A           83 RICLDILK---DKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN  148 (149)
T ss_dssp             BBCCGGGT---TTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             EEechhcC---CCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence            99999998   8999999999999999999954 6666654  45667799999999999999999864

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=2.1e-36  Score=258.95  Aligned_cols=139  Identities=23%  Similarity=0.505  Sum_probs=124.2

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCC-----CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-
Q 022719            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLE-----ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-   81 (293)
Q Consensus         8 ms~~a~kRL~kElk~L~~~p~~gi~~~p~~-----~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-   81 (293)
                      ||+.+.+||++|+++|++++++||++.|..     +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+| 
T Consensus         1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   80 (157)
T 2gjd_A            1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG   80 (157)
T ss_dssp             --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence            677899999999999999999999998874     48999999999999999999999999999999999999999999 


Q ss_pred             ---------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 ---------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 ---------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                               |.||+++|+.+ ++|+|+++|++||.+|++||.+ +|+++++  ++.++.+|++.|.++||+|+++|+.
T Consensus        81 i~HPnv~~~G~iCl~iL~~~-~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~  157 (157)
T 2gjd_A           81 FYHPNVYPSGTICLSILNED-QDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK  157 (157)
T ss_dssp             CCCTTBCTTSBBCCGGGCTT-TTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred             CccCCCCCCCcEeeecccCC-CCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence                     99999999832 3799999999999999999955 5555544  4566779999999999999999974

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=2.9e-36  Score=259.37  Aligned_cols=139  Identities=27%  Similarity=0.584  Sum_probs=125.7

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec------
Q 022719            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT------   81 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~~gi~~~p~~~-di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T------   81 (293)
                      ++.+.+||++|+++|++++++||++.|.++ |+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|      
T Consensus         1 a~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN   80 (164)
T 3h8k_A            1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN   80 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCC
Confidence            356899999999999999999999998866 9999999999999999999999999999999999999999999      


Q ss_pred             ----ccceeccCCC----------CCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhh
Q 022719           82 ----TKICLSISNH----------HPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  144 (293)
Q Consensus        82 ----G~ICLsiL~~----------~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~k  144 (293)
                          |+||+++|+.          +.+.|+|+++|++||.+|++||.+ ||+++++  |+.+|.+|+++|.++||+|+++
T Consensus        81 V~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~  160 (164)
T 3h8k_A           81 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK  160 (164)
T ss_dssp             BCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHH
Confidence                9999999973          237899999999999999999965 6666655  4667779999999999999998


Q ss_pred             hCC
Q 022719          145 FGT  147 (293)
Q Consensus       145 ya~  147 (293)
                      +.+
T Consensus       161 s~~  163 (164)
T 3h8k_A          161 SLG  163 (164)
T ss_dssp             HHT
T ss_pred             hhc
Confidence            753

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=2.4e-36  Score=260.40  Aligned_cols=142  Identities=23%  Similarity=0.478  Sum_probs=125.5

Q ss_pred             CCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCC-----CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeee
Q 022719            5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML   79 (293)
Q Consensus         5 ~~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~-----di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F   79 (293)
                      ...-|..|++||++|+++|++++++||++.|.++     |+++|+++|.||++|||+||+|+|+|.||++||++||+|+|
T Consensus         4 ~~~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F   83 (163)
T 3rcz_B            4 HHHHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRF   83 (163)
T ss_dssp             -----CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred             CcCCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEE
Confidence            4566889999999999999999999999999866     99999999999999999999999999999999999999999


Q ss_pred             ec----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhC
Q 022719           80 LT----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  146 (293)
Q Consensus        80 ~T----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya  146 (293)
                      +|          |.||+++|+. .++|+|+++|++||.+|++||.+ +|+++++  ++.++.+|++.|.++||+|+++|+
T Consensus        84 ~t~i~HPnV~~~G~iCl~iL~~-~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya  162 (163)
T 3rcz_B           84 TPPLFHPNVYPSGTVCLSILNE-EEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA  162 (163)
T ss_dssp             SSCCCSTTBCTTSBBCCGGGCT-TTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred             eCCCccCCCCCCCcEeccccCC-CCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            99          9999999983 24699999999999999999965 5665544  456678999999999999999997


Q ss_pred             C
Q 022719          147 T  147 (293)
Q Consensus       147 ~  147 (293)
                      .
T Consensus       163 ~  163 (163)
T 3rcz_B          163 P  163 (163)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=3e-36  Score=267.52  Aligned_cols=138  Identities=30%  Similarity=0.543  Sum_probs=126.7

Q ss_pred             CChHHHHHHHHHHHHHhhC---CCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---
Q 022719            8 LKNPAVKRILQEVKEMQSN---PSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---   81 (293)
Q Consensus         8 ms~~a~kRL~kElk~L~~~---p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---   81 (293)
                      ||+.+.+||++|+++|+++   ++.||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|   
T Consensus         2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~   81 (201)
T 3k9o_A            2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   81 (201)
T ss_dssp             --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence            7788999999999999987   3689999999999999999999999999999999999999999999999999999   


Q ss_pred             --------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719           82 --------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  148 (293)
Q Consensus        82 --------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~  148 (293)
                              |.||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  ++.+|.+|++.|.++||+|+++|+..
T Consensus        82 HPnv~~~~G~iCl~iL~---~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~  156 (201)
T 3k9o_A           82 HPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA  156 (201)
T ss_dssp             BTTBCTTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCcCCCCeeeCcccc---cCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence                    999999997   8999999999999999999965 7777765  46777899999999999999999865

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=2.3e-36  Score=258.13  Aligned_cols=135  Identities=28%  Similarity=0.589  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---------
Q 022719           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------   81 (293)
Q Consensus        11 ~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------   81 (293)
                      .+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|         
T Consensus         5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   84 (155)
T 1jat_A            5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR   84 (155)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999         


Q ss_pred             -ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719           82 -TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  148 (293)
Q Consensus        82 -G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~  148 (293)
                       |.|||++|+   +.|+|+++|++||.+|++||.+ +|+++++  ++.++.+|++.|.++||+|+++|+..
T Consensus        85 ~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~  152 (155)
T 1jat_A           85 LGRICLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK  152 (155)
T ss_dssp             TCCBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred             CCEEEchhhc---cCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence             999999997   8999999999999999999955 6666665  45667799999999999999999864

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=4.8e-36  Score=257.69  Aligned_cols=140  Identities=24%  Similarity=0.506  Sum_probs=126.4

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEEecCC-----CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec
Q 022719            7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLE-----ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT   81 (293)
Q Consensus         7 ~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~-----~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T   81 (293)
                      +|++.+.+||++|+++|++++++||.+.|..     +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|
T Consensus         3 ~M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   82 (161)
T 2grr_A            3 HMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP   82 (161)
T ss_dssp             -CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             cccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEec
Confidence            5888999999999999999999999998863     68999999999999999999999999999999999999999999


Q ss_pred             ----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 ----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 ----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                                |.||+++|+. .++|+|.++|++||.+|++||.+ +|+++++  |+.++.+|+++|.++||+|+++|+.
T Consensus        83 ~i~HPnv~~~G~iCl~iL~~-~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~  160 (161)
T 2grr_A           83 PLFHPNVYPSGTVCLSILEE-DKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP  160 (161)
T ss_dssp             CCCSTTBCTTSBBCCGGGCT-TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             CcccCCCCCCCeEeehhcCC-CCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence                      9999999983 24899999999999999999954 5555544  4566779999999999999999985

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=1.4e-36  Score=257.65  Aligned_cols=133  Identities=27%  Similarity=0.532  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---------
Q 022719           12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------   81 (293)
Q Consensus        12 a~kRL~kElk~L~~~p~~gi~~~p~~~-di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------   81 (293)
                      +.+||++|+++|++++++||++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|         
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~   81 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence            469999999999999999999999887 9999999999999999999999999999999999999999999         


Q ss_pred             --ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 --TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 --G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                        |.|||++|+   ++|+|+++|++||.+|++||.+ +|+++++  ++.++.+|++.|.++||+|+++|+.
T Consensus        82 ~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~  149 (149)
T 1fxt_A           82 VTGAICLDILK---NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             SSCCBCCHHHH---TSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred             CCCeEeCCcCC---CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence              999999997   8899999999999999999955 6666655  4667789999999999999999974

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=2.6e-36  Score=270.99  Aligned_cols=143  Identities=26%  Similarity=0.557  Sum_probs=130.3

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----
Q 022719            6 YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----   81 (293)
Q Consensus         6 ~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----   81 (293)
                      ..+++.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|    
T Consensus        18 ~~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H   97 (216)
T 2pwq_A           18 YFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH   97 (216)
T ss_dssp             -CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence            4567789999999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             -------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCChhHH
Q 022719           82 -------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPERQ  151 (293)
Q Consensus        82 -------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~~~~  151 (293)
                             |.|||++|+   +.|+|+++|++||.+|++||.+ ||+++++  ++.+|.+|++.|.++||+|+++|+.....
T Consensus        98 PNI~~~~G~ICL~iL~---~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~~~~  174 (216)
T 2pwq_A           98 PNISSQTGAICLDVLK---NEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPKE  174 (216)
T ss_dssp             TTBCTTTCBBCCHHHH---HHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC--
T ss_pred             CCCcCCCCEEEchhhc---ccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCCcc
Confidence                   999999998   7899999999999999999955 6776655  45677799999999999999999986543

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1.1e-35  Score=262.86  Aligned_cols=135  Identities=28%  Similarity=0.595  Sum_probs=126.2

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--------
Q 022719           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--------   81 (293)
Q Consensus        10 ~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--------   81 (293)
                      +.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|        
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~  126 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN  126 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence            568999999999999999999999999999999999999999999999999999999999999999999999        


Q ss_pred             --ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 --TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 --G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                        |.|||++|+   +.|+|.++|.+||.+|++||.+ ||+++++  ++.+|.+|++.|.++||+|+++|+.
T Consensus       127 ~~G~ICL~iL~---~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~  194 (194)
T 3bzh_A          127 SQGVICLDILK---DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  194 (194)
T ss_dssp             TTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCceechhhh---ccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence              999999997   8899999999999999999965 7776655  4667789999999999999999974

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=1.3e-35  Score=272.19  Aligned_cols=152  Identities=30%  Similarity=0.537  Sum_probs=135.6

Q ss_pred             CCCCChHHHHHHHHHHHHHhhC---CCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec
Q 022719            5 RYNLKNPAVKRILQEVKEMQSN---PSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT   81 (293)
Q Consensus         5 ~~~ms~~a~kRL~kElk~L~~~---p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T   81 (293)
                      ..+|++.+.+||++|+++|+++   ++.||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|
T Consensus        51 ~~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T  130 (253)
T 3e46_A           51 EFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT  130 (253)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             cccccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecC
Confidence            5789999999999999999987   4689999999999999999999999999999999999999999999999999998


Q ss_pred             -----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 -----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 -----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                                 |.|||++|+   +.|+|.++|++||.+|++||.+ ||+++++  ++.+|.+|++.|.++||+|+++|+.
T Consensus       131 ~i~HPNV~~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~  207 (253)
T 3e46_A          131 KIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG  207 (253)
T ss_dssp             CCCBTTBCTTTCBBCCGGGT---TCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHC
T ss_pred             CCccCCccCCCCeeeccccc---CCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence                       999999997   8999999999999999999965 7777765  4677789999999999999999986


Q ss_pred             h-----hHHHHHHHHHH
Q 022719          148 P-----ERQKLIDEIHE  159 (293)
Q Consensus       148 ~-----~~~~l~~e~~~  159 (293)
                      .     .+++.++.+.+
T Consensus       208 ~~~~~~~~~~~v~~l~~  224 (253)
T 3e46_A          208 APVSSPEYTKKIENLCA  224 (253)
T ss_dssp             CSCCCHHHHHHHHHHHH
T ss_pred             cccCcchHHHHHHHHHH
Confidence            5     34444444443

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=9e-36  Score=260.50  Aligned_cols=139  Identities=25%  Similarity=0.464  Sum_probs=124.7

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-----
Q 022719            7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-----   81 (293)
Q Consensus         7 ~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-----   81 (293)
                      +|+..+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|     
T Consensus        26 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP  105 (179)
T 1i7k_A           26 AARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHP  105 (179)
T ss_dssp             ----CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred             ccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccC
Confidence            378889999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             -----ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCChh
Q 022719           82 -----TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPE  149 (293)
Q Consensus        82 -----G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~~  149 (293)
                           |.|||++|+   +.|+|.++|++||.+|++||.+ +|+++++  ++.+| +|+++|.++||++++++....
T Consensus       106 NV~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~~  177 (179)
T 1i7k_A          106 NVDTQGNISLDILK---EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTSQ  177 (179)
T ss_dssp             TBCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC--
T ss_pred             ccccCCeEEcccCc---CcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhccc
Confidence                 999999997   8899999999999999999955 6666654  45677 999999999999999987643

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=4.9e-35  Score=252.54  Aligned_cols=142  Identities=18%  Similarity=0.360  Sum_probs=127.5

Q ss_pred             CCCCChHHHHHHHHHHHHHhhCCCCCeEEecC-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--
Q 022719            5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--   81 (293)
Q Consensus         5 ~~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~-~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--   81 (293)
                      .-+..+.+.+||++|+++|++++++||++.+. ++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|+|  
T Consensus         8 ~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i   86 (167)
T 3fn1_B            8 STRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKI   86 (167)
T ss_dssp             CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCC
T ss_pred             CccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCc
Confidence            34566789999999999999999999999854 67899999999 899999999999999999999999999999999  


Q ss_pred             --------ccceeccCCCC---CCCCCCcccHHHHHHHHHHcCCC--CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhC
Q 022719           82 --------TKICLSISNHH---PEHWQPSWSVRTALVALIAFMPT--NPNGALG--SLDYKKEERRALAIKSREAAPKFG  146 (293)
Q Consensus        82 --------G~ICLsiL~~~---pe~W~P~~sI~~VL~~I~~lL~~--~P~~~l~--A~~~~~~dre~f~~kare~~~kya  146 (293)
                              |.||+++|+.+   +++|+|.++|++||.+|++||.+  ||+++++  |+.+|.+|++.|.++||+|+++|+
T Consensus        87 ~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A  166 (167)
T 3fn1_B           87 WHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA  166 (167)
T ss_dssp             CCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence                    99999999854   45899999999999999999976  5666655  466778999999999999999997


Q ss_pred             C
Q 022719          147 T  147 (293)
Q Consensus       147 ~  147 (293)
                      .
T Consensus       167 ~  167 (167)
T 3fn1_B          167 R  167 (167)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.7e-36  Score=258.68  Aligned_cols=139  Identities=17%  Similarity=0.415  Sum_probs=126.4

Q ss_pred             cCCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--
Q 022719            4 DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--   81 (293)
Q Consensus         4 ~~~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--   81 (293)
                      ...+|++.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|  
T Consensus        16 ~~~~M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i   95 (169)
T 1yrv_A           16 PRGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIP   95 (169)
T ss_dssp             CTTGGGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCC
T ss_pred             ccCccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCC
Confidence            356899999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             ---------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhh
Q 022719           82 ---------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  144 (293)
Q Consensus        82 ---------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~k  144 (293)
                               |.||+++|+ +++.|+|+++|++||.+|++||.+ ||+++++  |+.+|.+|++.|.++ |+++++
T Consensus        96 ~HPNI~~~~G~ICL~iL~-~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~  168 (169)
T 1yrv_A           96 FHPNVDPHTGQPCIDFLD-NPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR  168 (169)
T ss_dssp             CCTTBCTTTCCBCCHHHH-CGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred             ccCcccCCCCeEeehhhc-CCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence                     999999997 347899999999999999999965 6666654  467778999999998 888764

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=7.4e-35  Score=248.62  Aligned_cols=135  Identities=26%  Similarity=0.486  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEE-ecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--------
Q 022719           11 PAVKRILQEVKEMQSNPSDDFMS-LPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--------   81 (293)
Q Consensus        11 ~a~kRL~kElk~L~~~p~~gi~~-~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--------   81 (293)
                      .+.+||++|+++|++++++||.+ .+.++|+++|+++|. |++|||+||+|+|+|.||++||++||+|+|+|        
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~   82 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD   82 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence            36799999999999999999999 888999999999999 99999999999999999999999999999999        


Q ss_pred             --ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719           82 --TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  148 (293)
Q Consensus        82 --G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~  148 (293)
                        |.||+++|+  +++|+|+++|++||.+|++||.+ +|+++++  ++.++.+|++.|.++||+|+++|+..
T Consensus        83 ~~G~iCl~iL~--~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~  152 (155)
T 1wzv_A           83 ENGQICLPIIS--SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD  152 (155)
T ss_dssp             TTCBCCCGGGC--TTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred             CCCeEeecCCC--ccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence              999999993  28999999999999999999955 6666654  45677899999999999999999864

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=2e-34  Score=250.19  Aligned_cols=138  Identities=22%  Similarity=0.414  Sum_probs=122.1

Q ss_pred             CChHHHHHHHHHHHHHhh-C-C------CC---CeEEec-CCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCC
Q 022719            8 LKNPAVKRILQEVKEMQS-N-P------SD---DFMSLP-LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPP   75 (293)
Q Consensus         8 ms~~a~kRL~kElk~L~~-~-p------~~---gi~~~p-~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP   75 (293)
                      |++.+.+||++|+++|++ + +      +.   ++.+.| .++|+++|+++|.||++|||+||+|+|+|.||++||++||
T Consensus         3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP   82 (172)
T 2y9m_A            3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP   82 (172)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred             CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence            899999999999999998 5 3      33   467788 7889999999999999999999999999999999999999


Q ss_pred             eeeeec------------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHH-hHHHHHHHHH
Q 022719           76 SFMLLT------------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKE-ERRALAIKSR  139 (293)
Q Consensus        76 ~v~F~T------------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~-dre~f~~kar  139 (293)
                      +|+|+|            |.|||++|+  ++.|+|+++|++||.+|++||.+ +|+++++  |+.++.+ |++.|.++||
T Consensus        83 ~v~f~t~~i~HPni~~~~G~iCl~iL~--~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~  160 (172)
T 2y9m_A           83 KISFMQNNILHCNVKSATGEICLNILK--PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVK  160 (172)
T ss_dssp             EEEECTTSCCCTTEETTTTEECCGGGS--TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHH
T ss_pred             EEEEeeCCeecCCCcCCCCEEeccccC--CCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHH
Confidence            999998            999999996  47899999999999999999955 6666654  4566677 9999999999


Q ss_pred             HHHhhhCC
Q 022719          140 EAAPKFGT  147 (293)
Q Consensus       140 e~~~kya~  147 (293)
                      +|++++..
T Consensus       161 ~~~~~~~~  168 (172)
T 2y9m_A          161 YFLAERER  168 (172)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99998754

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=2.5e-34  Score=251.88  Aligned_cols=139  Identities=29%  Similarity=0.586  Sum_probs=122.0

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEe-cCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec------
Q 022719            9 KNPAVKRILQEVKEMQSNPSDDFMSL-PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT------   81 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~~gi~~~-p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T------   81 (293)
                      +..+.|||++|+++|++++++||++. ++++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|      
T Consensus         5 ~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   84 (183)
T 3rz3_A            5 SPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPN   84 (183)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCC
Confidence            46789999999999999999999998 77889999999999999999999999999999999999999999999      


Q ss_pred             ----ccceeccCCCC----------CCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHH------hHHHHHHHH
Q 022719           82 ----TKICLSISNHH----------PEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKE------ERRALAIKS  138 (293)
Q Consensus        82 ----G~ICLsiL~~~----------pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~------dre~f~~ka  138 (293)
                          |+||+++|+.+          .+.|+|+++|++||++|++||.+ ||+++++  |+.++.+      ++++|.+++
T Consensus        85 V~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v  164 (183)
T 3rz3_A           85 IYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDII  164 (183)
T ss_dssp             BCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred             CCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHH
Confidence                99999999621          27899999999999999999965 6666654  4455556      678999999


Q ss_pred             HHHHhhhCC
Q 022719          139 REAAPKFGT  147 (293)
Q Consensus       139 re~~~kya~  147 (293)
                      |+++.++..
T Consensus       165 ~~~v~~s~~  173 (183)
T 3rz3_A          165 RKQVLGTKV  173 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988753

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=2.6e-34  Score=249.59  Aligned_cols=134  Identities=25%  Similarity=0.606  Sum_probs=100.4

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCC-CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-----
Q 022719            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLE-ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-----   81 (293)
Q Consensus         8 ms~~a~kRL~kElk~L~~~p~~gi~~~p~~-~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-----   81 (293)
                      .+..+.+||++|+++|++++++||++.|.+ +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|     
T Consensus        14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HP   93 (172)
T 2awf_A           14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHP   93 (172)
T ss_dssp             CCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCT
T ss_pred             ChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccC
Confidence            456789999999999999999999999875 79999999999999999999999999999999999999999999     


Q ss_pred             -----ccceeccCCC----------CCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHH-HHHHHHHHH
Q 022719           82 -----TKICLSISNH----------HPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERR-ALAIKSREA  141 (293)
Q Consensus        82 -----G~ICLsiL~~----------~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre-~f~~kare~  141 (293)
                           |+||+++|+.          +.+.|+|+++|++||.+|++||.+ ||+++++  |+.+|.+|++ +|.++||+|
T Consensus        94 NV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~  172 (172)
T 2awf_A           94 NVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC  172 (172)
T ss_dssp             TBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred             CCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence                 9999999973          136899999999999999999965 6666665  4677789999 999999875

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=1.1e-34  Score=260.29  Aligned_cols=136  Identities=26%  Similarity=0.518  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--------
Q 022719           11 PAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--------   81 (293)
Q Consensus        11 ~a~kRL~kElk~L~~~p~~gi~~~p~~~-di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--------   81 (293)
                      .+.+||++|+++|++++++||++.|.++ ++++|+++|.||++|||+||+|+++|.||++||++||+|+|+|        
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~   81 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   81 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence            3679999999999999999999999876 5669999999999999999999999999999999999999999        


Q ss_pred             ---ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCChh
Q 022719           82 ---TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPE  149 (293)
Q Consensus        82 ---G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~~  149 (293)
                         |.|||++|+   +.|+|+++|++||.+|++||.+ +|+++++  ++.+|.+|++.|.++||+|+++|+...
T Consensus        82 ~~~G~ICL~iL~---~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~  152 (215)
T 1tte_A           82 SVTGAICLDILR---NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASET  152 (215)
T ss_dssp             SSSSCCCSSTTT---CCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCCC
T ss_pred             CCCCEEECccCC---CCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccCC
Confidence               999999998   8899999999999999999965 6666655  356777999999999999999999653

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.1e-34  Score=249.98  Aligned_cols=149  Identities=39%  Similarity=0.775  Sum_probs=116.7

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-----
Q 022719            7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-----   81 (293)
Q Consensus         7 ~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-----   81 (293)
                      +.++.+.+||++|+++|++++++||.+.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|     
T Consensus        10 ~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~~~~~   89 (187)
T 2f4w_A           10 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRF   89 (187)
T ss_dssp             ----CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSB
T ss_pred             CCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCCCcee
Confidence            667789999999999999999999999999999999999999999999999999999999999999999999998     


Q ss_pred             ---ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHHHHHHHHHhHHHHHHHHHHHHhhhCChhHHHHHHHH
Q 022719           82 ---TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEI  157 (293)
Q Consensus        82 ---G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~A~~~~~~dre~f~~kare~~~kya~~~~~~l~~e~  157 (293)
                         |+|||++|+.|++.|+|.++|.+||.+|++||.+ +|+  .++......+++.|++.++.|..+.  +.+.++..++
T Consensus        90 ~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~--~g~~~~~~~~r~~~a~~s~~~~~~~--~~f~~~fp~~  165 (187)
T 2f4w_A           90 KCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT--LGSIETSDFTKRQLAVQSLAFNLKD--KVFCELFPEV  165 (187)
T ss_dssp             CTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCC--TTBCCCCHHHHHHHHHHHHHHHHTC--HHHHHHCHHH
T ss_pred             ccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCC--CcccccChHHHHHHHHHHHHHhhcC--chHHHhhHHH
Confidence               9999999987778999999999999999999944 544  3333334567889999999998765  4444444444


Q ss_pred             HH
Q 022719          158 HE  159 (293)
Q Consensus       158 ~~  159 (293)
                      .+
T Consensus       166 ~~  167 (187)
T 2f4w_A          166 VE  167 (187)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=2e-34  Score=245.70  Aligned_cols=133  Identities=20%  Similarity=0.461  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------
Q 022719           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------   81 (293)
Q Consensus        12 a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------   81 (293)
                      +.+||++|+++|+++   |+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|          
T Consensus         3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~   79 (152)
T 2onu_A            3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEA   79 (152)
T ss_dssp             CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred             HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCc
Confidence            568999999999884   7888899999999999999999999999999999999999999999999998          


Q ss_pred             -ccceeccCCCCCCCCCCcccHHHHHHH-HHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCChhH
Q 022719           82 -TKICLSISNHHPEHWQPSWSVRTALVA-LIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPER  150 (293)
Q Consensus        82 -G~ICLsiL~~~pe~W~P~~sI~~VL~~-I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~~~  150 (293)
                       |.||+++|+   +.|+|+++|++||.+ |++||.+ ||+++++  |+.++.+|++.|.++||+|+++|+....
T Consensus        80 ~G~iCl~il~---~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~~~  150 (152)
T 2onu_A           80 SGSVCLDVIN---QTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASKDL  150 (152)
T ss_dssp             TCBBCHHHHH---HHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCGGG
T ss_pred             CCeEeccccc---ccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccCcc
Confidence             999999997   789999999999999 6788854 6666554  4567789999999999999999998653

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=4.2e-34  Score=243.73  Aligned_cols=135  Identities=27%  Similarity=0.598  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEe-cCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---------
Q 022719           12 AVKRILQEVKEMQSNPSDDFMSL-PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------   81 (293)
Q Consensus        12 a~kRL~kElk~L~~~p~~gi~~~-p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------   81 (293)
                      +.+||++|+++|++++++|+.+. +.++|+++|+++|. |++|||+||+|+|+|.||++||++||+|+|+|         
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   81 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE   81 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence            56899999999999999999855 46789999999998 99999999999999999999999999999999         


Q ss_pred             -ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCChh
Q 022719           82 -TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPE  149 (293)
Q Consensus        82 -G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~~  149 (293)
                       |.||+++|+  +++|+|+++|++||.+|++||.+ +|+++++  ++.++.+|++.|.++||+|+++|+...
T Consensus        82 ~G~iCl~iL~--~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~  151 (154)
T 1c4z_D           82 KGQVCLPVIS--AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKR  151 (154)
T ss_dssp             TCBBCCTTTS--SSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC----
T ss_pred             CCEEECCCCC--CCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcccC
Confidence             999999996  37899999999999999999954 6666554  456677999999999999999999743

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.5e-33  Score=239.84  Aligned_cols=130  Identities=19%  Similarity=0.411  Sum_probs=118.0

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEe-cCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec------
Q 022719            9 KNPAVKRILQEVKEMQSNPSDDFMSL-PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT------   81 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~~gi~~~-p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T------   81 (293)
                      ++.+.+||++|+++|  ++++|+++. |+++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|+|      
T Consensus         4 ~~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   80 (160)
T 1y8x_A            4 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN   80 (160)
T ss_dssp             CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             ccHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCc
Confidence            457899999999999  577899997 8899999999998 999999999999999999999999999999999      


Q ss_pred             ----ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhh
Q 022719           82 ----TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  144 (293)
Q Consensus        82 ----G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~k  144 (293)
                          |.|||++|+   +.|+|+++|++||.+|++||.+ +|+++++  ++.++.+|++.|.++||+|++.
T Consensus        81 v~~~G~iCl~iL~---~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~  147 (160)
T 1y8x_A           81 IDLEGNVCLNILR---EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG  147 (160)
T ss_dssp             BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred             CCCCCeEEcccch---hhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence                999999998   7899999999999999999955 6666544  4566779999999999999874

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.5e-34  Score=249.20  Aligned_cols=138  Identities=24%  Similarity=0.475  Sum_probs=120.2

Q ss_pred             CCCCh--HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--
Q 022719            6 YNLKN--PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--   81 (293)
Q Consensus         6 ~~ms~--~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--   81 (293)
                      ..|++  .+.+||++|+++|+.   .|+++.+. +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|  
T Consensus        18 ~~ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i   93 (179)
T 2z5d_A           18 GSMSSPSPGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKI   93 (179)
T ss_dssp             -----CCHHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             ccCCCchHHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCC
Confidence            35655  589999999999985   57888887 67999999999999999999999999999999999999999999  


Q ss_pred             ---------ccceeccCCCCCCCCCCcccHHHHHHH-HHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719           82 ---------TKICLSISNHHPEHWQPSWSVRTALVA-LIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  148 (293)
Q Consensus        82 ---------G~ICLsiL~~~pe~W~P~~sI~~VL~~-I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~  148 (293)
                               |.||+++|+   +.|+|+++|++||.+ |++||.+ ||+++++  ++.+|.+|+++|.++||+|+++|+..
T Consensus        94 ~HPNV~~~~G~ICL~iL~---~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~  170 (179)
T 2z5d_A           94 FHPNIDEASGTVCLDVIN---QTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE  170 (179)
T ss_dssp             CBTTBCTTTCBBCHHHHH---HHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSH
T ss_pred             ccCcCCCCCCeEeccccc---cCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence                     999999998   789999999999999 9999954 6666554  45677899999999999999999986


Q ss_pred             hH
Q 022719          149 ER  150 (293)
Q Consensus       149 ~~  150 (293)
                      ..
T Consensus       171 ~~  172 (179)
T 2z5d_A          171 EA  172 (179)
T ss_dssp             HH
T ss_pred             ch
Confidence            53

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=5.3e-33  Score=243.06  Aligned_cols=134  Identities=18%  Similarity=0.363  Sum_probs=121.4

Q ss_pred             CCCCChHHHHHHHHHHHHHhhCCCCCeEEe-cCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--
Q 022719            5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSL-PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--   81 (293)
Q Consensus         5 ~~~ms~~a~kRL~kElk~L~~~p~~gi~~~-p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--   81 (293)
                      ..++++.+.+||++|+++|  ++++|+++. |.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|+|  
T Consensus        20 ~~~~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i   96 (180)
T 2nvu_C           20 SSKKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV   96 (180)
T ss_dssp             CCCSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCC
T ss_pred             ccCCccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccC
Confidence            3567788999999999999  578899997 8899999999998 999999999999999999999999999999999  


Q ss_pred             --------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhh
Q 022719           82 --------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  144 (293)
Q Consensus        82 --------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~k  144 (293)
                              |.||+++|+   ++|+|+++|++||.+|++||.+ ||+++++  ++.+|.+|++.|.++||+|++.
T Consensus        97 ~HPNV~~~G~iCl~iL~---~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~  167 (180)
T 2nvu_C           97 YHPNIDLEGNVALNILR---EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG  167 (180)
T ss_dssp             CBTTBCTTSBBCCGGGT---TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred             ccCCCCCCCcEEccccc---ccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence                    999999998   7899999999999999999955 6666554  4667779999999999999875

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=1.4e-32  Score=266.47  Aligned_cols=137  Identities=28%  Similarity=0.613  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--------
Q 022719           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--------   81 (293)
Q Consensus        10 ~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--------   81 (293)
                      +.+.|||++|+++|++++++|+++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|        
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~   81 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   81 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence            468999999999999999999999999999999999999999999999999999999999999999999999        


Q ss_pred             --ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCChh
Q 022719           82 --TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPE  149 (293)
Q Consensus        82 --G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~~  149 (293)
                        |.||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  ++.++.+|++.|.++||+|+++|+...
T Consensus        82 ~~G~iCl~il~---~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~~  151 (399)
T 4ddg_A           82 SNGSISLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGG  151 (399)
T ss_dssp             TTCBBCCGGGT---TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSCT
T ss_pred             CCCeEeCcccc---cCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhccc
Confidence              999999997   8999999999999999999965 7777765  467778999999999999999998654

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=99.98  E-value=4.9e-33  Score=241.48  Aligned_cols=132  Identities=22%  Similarity=0.468  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---------
Q 022719           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------   81 (293)
Q Consensus        11 ~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------   81 (293)
                      .+.+||++|+++|++++. ++   +.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|         
T Consensus        12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~   87 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE   87 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred             cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence            467999999999999874 44   35789999999999999999999999999999999999999999998         


Q ss_pred             --ccceeccCCCCCCCCCCcccHHHHHHHH-HHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCChh
Q 022719           82 --TKICLSISNHHPEHWQPSWSVRTALVAL-IAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPE  149 (293)
Q Consensus        82 --G~ICLsiL~~~pe~W~P~~sI~~VL~~I-~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~~  149 (293)
                        |.||+++|+   +.|+|+++|++||.+| ++||.+ +|+++++  ++.++.+|++.|.++||+|+++|+...
T Consensus        88 ~~G~iCl~iL~---~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~~  158 (171)
T 1yf9_A           88 RSGSVCLDVIN---QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATPQ  158 (171)
T ss_dssp             TTCBBCHHHHH---HHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCHH
T ss_pred             cCCeEeccccc---cCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcChh
Confidence              999999997   7899999999999997 688854 5555544  456677999999999999999999864

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=99.98  E-value=2.7e-32  Score=225.30  Aligned_cols=106  Identities=29%  Similarity=0.561  Sum_probs=95.6

Q ss_pred             CCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---
Q 022719            5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---   81 (293)
Q Consensus         5 ~~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---   81 (293)
                      +|||+. +.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|   
T Consensus         1 ~~~m~~-a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~   79 (125)
T 2fo3_A            1 KYNMGN-ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPP   79 (125)
T ss_dssp             ---------CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCC
T ss_pred             CCCchH-HHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCC
Confidence            578864 7899999999999999999999999999999999999999999999999999999999999999999998   


Q ss_pred             --------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCC
Q 022719           82 --------TKICLSISNHHPEHWQPSWSVRTALVALIAFMP  114 (293)
Q Consensus        82 --------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~  114 (293)
                              |+||+++|+   ++|+|+++|++||.+|++||.
T Consensus        80 ~HPnv~~~G~iCl~iL~---~~W~P~~~i~~vl~si~~ll~  117 (125)
T 2fo3_A           80 KHTHVYSNGDICLSLLG---DDYNPSLSISGLVLSIISMLS  117 (125)
T ss_dssp             CBTTBCTTSBBCCGGGT---TTCCTTCCHHHHHHHHHHHHC
T ss_pred             CCCcCCCCCEEEchhcC---CCCCCCCcHHHHHHHHHHHHh
Confidence                    999999997   889999999999999999994

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=99.97  E-value=4.6e-32  Score=238.97  Aligned_cols=135  Identities=19%  Similarity=0.342  Sum_probs=122.4

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCCeEEe----cCCCCce---EEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeee
Q 022719            6 YNLKNPAVKRILQEVKEMQSNPSDDFMSL----PLEENIF---EWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFM   78 (293)
Q Consensus         6 ~~ms~~a~kRL~kElk~L~~~p~~gi~~~----p~~~di~---~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~   78 (293)
                      .+.++.+.+||++|+++|+  +++|+++.    |+++|++   +|+++|. |++|||+||+|+++|.||++||++||+|+
T Consensus        24 ~~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~  100 (190)
T 3o2u_A           24 QPNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVV  100 (190)
T ss_dssp             SCCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEE
T ss_pred             CCCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeE
Confidence            4566789999999999998  67899987    8999999   9999997 88899999999999999999999999999


Q ss_pred             eec----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhh
Q 022719           79 LLT----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKF  145 (293)
Q Consensus        79 F~T----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~ky  145 (293)
                      |+|          |.||+++|+   ++|+|.++|++||.+|++||.+ ||+++++  |+.+|.+|++.|.++||+|++.+
T Consensus       101 f~t~i~HPnV~~~G~iCl~iL~---~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~  177 (190)
T 3o2u_A          101 CLKKIFHPNIDLKGNVCLNILR---EDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGG  177 (190)
T ss_dssp             ECSCCCCTTBCTTSBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTC
T ss_pred             EecCcccCCCCCCCeEechhcc---CCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence            999          999999998   8999999999999999999965 7777665  46677799999999999999765


Q ss_pred             C
Q 022719          146 G  146 (293)
Q Consensus       146 a  146 (293)
                      .
T Consensus       178 ~  178 (190)
T 3o2u_A          178 S  178 (190)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=99.97  E-value=1.6e-31  Score=223.79  Aligned_cols=110  Identities=29%  Similarity=0.550  Sum_probs=102.9

Q ss_pred             cCCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--
Q 022719            4 DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--   81 (293)
Q Consensus         4 ~~~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--   81 (293)
                      .+++|+. +.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|  
T Consensus        14 ~~~~~~~-~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i   92 (136)
T 2h2y_A           14 TKYNLGN-ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKP   92 (136)
T ss_dssp             SCCCTTS-HHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSC
T ss_pred             hhccchH-HHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCC
Confidence            4567764 7899999999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             ---------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCCCCC
Q 022719           82 ---------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN  118 (293)
Q Consensus        82 ---------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~~P~  118 (293)
                               |+||+++|+   ++|+|+++|++||.+|++|| .+|+
T Consensus        93 ~~HPnv~~~G~ICl~iL~---~~WsP~~ti~~vL~si~sll-~~p~  134 (136)
T 2h2y_A           93 PKHTHVYSNGDICLSVLG---DDYNPSLSISGLILSIISML-SSAK  134 (136)
T ss_dssp             CCCTTBCTTCCBCCGGGT---TTCCTTCCHHHHHHHHHHHH-SSSC
T ss_pred             CCCCcCCCCCEEECcccc---CCCCCCCcHHHHHHHHHHHH-hCcC
Confidence                     999999997   88999999999999999999 4443

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=99.97  E-value=9.2e-32  Score=232.29  Aligned_cols=131  Identities=20%  Similarity=0.449  Sum_probs=115.7

Q ss_pred             CCCChHHHHHHHHHHHHHhhCC------------CCCeEEecCCCCceEEEEEEeCCCCCCCC--CCeEEEEeeCCCCCC
Q 022719            6 YNLKNPAVKRILQEVKEMQSNP------------SDDFMSLPLEENIFEWQFAIRGPGDTEFE--GGIYHGRIQLPAEYP   71 (293)
Q Consensus         6 ~~ms~~a~kRL~kElk~L~~~p------------~~gi~~~p~~~di~~W~~~I~GP~~TpYe--GG~F~~~I~fP~dYP   71 (293)
                      ..||+.+.+||++|+++|++++            +.|+++.+.++|+++|+++|.||++|||+  ||+|+|+|.||++||
T Consensus         3 ~~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP   82 (167)
T 4ds2_A            3 GSMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYP   82 (167)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTT
T ss_pred             ccccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCC
Confidence            4688889999999999999987            78999999999999999999999999999  999999999999999


Q ss_pred             CCCCeeeeec----------ccceeccCCCCCCCCCCcccHHHHHH-HHHHcCCC---CCCChHH--HHHHHHHhHHHHH
Q 022719           72 FKPPSFMLLT----------TKICLSISNHHPEHWQPSWSVRTALV-ALIAFMPT---NPNGALG--SLDYKKEERRALA  135 (293)
Q Consensus        72 ~~PP~v~F~T----------G~ICLsiL~~~pe~W~P~~sI~~VL~-~I~~lL~~---~P~~~l~--A~~~~~~dre~f~  135 (293)
                      ++||+|+|+|          |.||+++|+   ++|+|+++|+++|+ .|++|+..   ||+++++  |+.++.+|+++|.
T Consensus        83 ~~pP~v~f~t~i~HPnv~~~G~iCl~il~---~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~  159 (167)
T 4ds2_A           83 HEPPTVRFVTPVYSPLVTGEGGICDRMVN---DFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFA  159 (167)
T ss_dssp             TSCCEEEESSCCCCSSCCTTSCCCTHHHH---TTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHH
T ss_pred             CCCCEEEEeCCcccccCCCCCEEEcccCc---CCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHH
Confidence            9999999999          999999997   89999999999754 56666642   5566654  5677789999999


Q ss_pred             HHHH
Q 022719          136 IKSR  139 (293)
Q Consensus       136 ~kar  139 (293)
                      ++||
T Consensus       160 ~~vr  163 (167)
T 4ds2_A          160 ARVR  163 (167)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9987

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=99.97  E-value=1.2e-30  Score=246.09  Aligned_cols=144  Identities=25%  Similarity=0.355  Sum_probs=126.4

Q ss_pred             CCCCChHHHHHHHHHHHHHhhCCCCC----eEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719            5 RYNLKNPAVKRILQEVKEMQSNPSDD----FMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus         5 ~~~ms~~a~kRL~kElk~L~~~p~~g----i~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      .-+||..+.+||++|+++|++++++|    +++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus        70 ~~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~  149 (323)
T 3ceg_A           70 NDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE  149 (323)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence            34689999999999999999988774    55778899999999999999999999999999999999999999999998


Q ss_pred             c---------------ccceeccCCCC----CCCCCCcc-cHHHHHHHHHHcCC-CCC--CChHHH----HHHHHHhHHH
Q 022719           81 T---------------TKICLSISNHH----PEHWQPSW-SVRTALVALIAFMP-TNP--NGALGS----LDYKKEERRA  133 (293)
Q Consensus        81 T---------------G~ICLsiL~~~----pe~W~P~~-sI~~VL~~I~~lL~-~~P--~~~l~A----~~~~~~dre~  133 (293)
                      |               |+|||++|+.+    ++.|+|++ +|++||++|++||. .+|  +++++.    ..++.+|++.
T Consensus       150 T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~  229 (323)
T 3ceg_A          150 TTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSRE  229 (323)
T ss_dssp             CSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHH
T ss_pred             ccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHH
Confidence            7               89999999743    26899999 89999999999995 344  555542    4677899999


Q ss_pred             HHHHHHHHHhhhCCh
Q 022719          134 LAIKSREAAPKFGTP  148 (293)
Q Consensus       134 f~~kare~~~kya~~  148 (293)
                      |.+++|+|+++|+..
T Consensus       230 Y~~~vr~~t~k~A~~  244 (323)
T 3ceg_A          230 YDGNIRQATVKWAML  244 (323)
T ss_dssp             HHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHhhH
Confidence            999999999999864

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=7.3e-31  Score=220.07  Aligned_cols=105  Identities=27%  Similarity=0.583  Sum_probs=98.7

Q ss_pred             CCCCChHHHHHHHHHHHHHhhCCCCCeEEe--cCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-
Q 022719            5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSL--PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-   81 (293)
Q Consensus         5 ~~~ms~~a~kRL~kElk~L~~~p~~gi~~~--p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-   81 (293)
                      ..+|++.+ +||++|+++|++++++||++.  +.++|+++|+++|.||+|||||||+|+++|.||++||++||+|+|+| 
T Consensus        17 ~~~Ms~~~-~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~   95 (136)
T 2a7l_A           17 RGSMASMQ-KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE   95 (136)
T ss_dssp             GGGGTTSC-HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS
T ss_pred             chhccHHH-HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCC
Confidence            45677644 999999999999999999865  88999999999999999999999999999999999999999999998 


Q ss_pred             -----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcC
Q 022719           82 -----------TKICLSISNHHPEHWQPSWSVRTALVALIAFM  113 (293)
Q Consensus        82 -----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL  113 (293)
                                 |+||+++|+   ++|+|+++|++||.+|++||
T Consensus        96 i~~~HPNV~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~slL  135 (136)
T 2a7l_A           96 NIPVHPHVYSNGHICLSILT---EDWSPALSVQSVCLSIISML  135 (136)
T ss_dssp             CCCCBTTBCTTCBBCCGGGT---TTCCTTSCHHHHHHHHHHHT
T ss_pred             CcCCCccCCCCCeEEchhcC---CCCCCCCcHHHHHHHHHHHh
Confidence                       899999998   89999999999999999998

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=99.96  E-value=1.8e-29  Score=217.02  Aligned_cols=115  Identities=27%  Similarity=0.353  Sum_probs=101.5

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCC-eEEec-CCCC--ceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-
Q 022719            7 NLKNPAVKRILQEVKEMQSNPSDD-FMSLP-LEEN--IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-   81 (293)
Q Consensus         7 ~ms~~a~kRL~kElk~L~~~p~~g-i~~~p-~~~d--i~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-   81 (293)
                      .+..++.+||++|+++|++++++| +.+.+ +++|  +++|+++|.||++||||||+|+++|.||++||++||+|+|+| 
T Consensus        21 ~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~  100 (160)
T 2a4d_A           21 GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK  100 (160)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             eeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence            456789999999999999999888 67776 4554  999999999999999999999999999999999999999999 


Q ss_pred             ----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC--CCCChHH
Q 022719           82 ----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT--NPNGALG  122 (293)
Q Consensus        82 ----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~--~P~~~l~  122 (293)
                                |+||+++|+.+ +.|+|+++|++||.+|++||.+  |++++++
T Consensus       101 i~HPNV~~~~G~ICl~iL~~~-~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n  152 (160)
T 2a4d_A          101 INMNGVNSSNGVVDPRAISVL-AKWQNSYSIKVVLQELRRLMMSKENMKLPQP  152 (160)
T ss_dssp             CCCTTBCTTTCBBCGGGSHHH-HTCCTTCCHHHHHHHHHHHHTSTTTTTCCCC
T ss_pred             ceeCCEECCCCEEehhhcCCc-cCCCccCcHHHHHHHHHHHHccCCCCCCCCC
Confidence                      99999999633 5799999999999999999954  5555544

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=99.96  E-value=1.9e-29  Score=215.97  Aligned_cols=112  Identities=24%  Similarity=0.333  Sum_probs=100.0

Q ss_pred             CCChHHHHHHHHHHHHHhhC-CCCCeEEecCC-C--CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-
Q 022719            7 NLKNPAVKRILQEVKEMQSN-PSDDFMSLPLE-E--NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-   81 (293)
Q Consensus         7 ~ms~~a~kRL~kElk~L~~~-p~~gi~~~p~~-~--di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-   81 (293)
                      ..+.++.+||++|+++|+++ +++|+++.+.. +  |+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+| 
T Consensus        17 ~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~   96 (156)
T 2q0v_A           17 QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK   96 (156)
T ss_dssp             SSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             cccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcc
Confidence            45567899999999999998 78899998853 3  5999999999999999999999999999999999999999999 


Q ss_pred             ---------ccc---eeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH
Q 022719           82 ---------TKI---CLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG  122 (293)
Q Consensus        82 ---------G~I---CLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~  122 (293)
                               |+|   ||++|+    .|+|+++|++||.+|++||.+ +|+++++
T Consensus        97 i~HPNV~~~G~icisCL~iL~----~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n  146 (156)
T 2q0v_A           97 IEMSCVDNCGRVIKNNLHILK----NWNRNYTIETILISLRQEMLSSANKRLPQ  146 (156)
T ss_dssp             CCCTTBCTTSBBCGGGSHHHH----TCCTTCCHHHHHHHHHHHTTSTTTTTCCC
T ss_pred             cccCCCccCCeEehhhccccc----CCCCcCcHHHHHHHHHHHHhCCCCCCcCC
Confidence                     999   899996    499999999999999999955 5555443

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.95  E-value=6.1e-30  Score=224.80  Aligned_cols=110  Identities=12%  Similarity=0.404  Sum_probs=100.4

Q ss_pred             cCCCCChHHHHHHHHHHHHHhhCC---CCCeEEecCCCCceEEEEEEeCC-CCCCCCC-----------CeEEEEeeCCC
Q 022719            4 DRYNLKNPAVKRILQEVKEMQSNP---SDDFMSLPLEENIFEWQFAIRGP-GDTEFEG-----------GIYHGRIQLPA   68 (293)
Q Consensus         4 ~~~~ms~~a~kRL~kElk~L~~~p---~~gi~~~p~~~di~~W~~~I~GP-~~TpYeG-----------G~F~~~I~fP~   68 (293)
                      ....|+..+.+||++|+++|++++   +.||.+.|.++|+++|+++|.|| ++|||+|           |+|+|+|.||+
T Consensus        20 g~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~   99 (186)
T 1zuo_A           20 GAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKD   99 (186)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCT
T ss_pred             CcccccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCC
Confidence            467899999999999999999998   68899999999999999999998 9999998           89999999999


Q ss_pred             CCCCCCCeeeeec-----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC
Q 022719           69 EYPFKPPSFMLLT-----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT  115 (293)
Q Consensus        69 dYP~~PP~v~F~T-----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~  115 (293)
                      +||++||+|+|.|           |.|||++|+  ++.|+|+++|++||.+|++||.+
T Consensus       100 ~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~--~~~WsP~~ti~~VL~sI~slL~~  155 (186)
T 1zuo_A          100 NFPFDPPFVRVVLPVLSGGYVLGGGALCMELLT--KQGWSSAYSIESVIMQINATLVK  155 (186)
T ss_dssp             TTTSSCCEEEEEESCEESTTBCGGGBBCCGGGS--TTTCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCeEEEeCCccCCCccCCCCcEEeccCC--CCCCCCcCcHHHHHHHHHHHHcC
Confidence            9999999999998           899999996  37899999999999999999944

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=99.95  E-value=4.5e-29  Score=209.25  Aligned_cols=102  Identities=22%  Similarity=0.404  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHHHHHhhC-CCCCeEEecCC-C--CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----
Q 022719           10 NPAVKRILQEVKEMQSN-PSDDFMSLPLE-E--NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----   81 (293)
Q Consensus        10 ~~a~kRL~kElk~L~~~-p~~gi~~~p~~-~--di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----   81 (293)
                      .++.+||++|+++|+++ ++.|+.+.+.. +  |+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|    
T Consensus         5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   84 (138)
T 1jat_B            5 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL   84 (138)
T ss_dssp             CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEccccc
Confidence            36779999999999998 78899998853 3  5999999999999999999999999999999999999999999    


Q ss_pred             -------ccc--eeccCCCCCCCCCCcccHHHHHHHHHHcCCC
Q 022719           82 -------TKI--CLSISNHHPEHWQPSWSVRTALVALIAFMPT  115 (293)
Q Consensus        82 -------G~I--CLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~  115 (293)
                             |.|  ||++|+    +|+|+++|++||.+|++||.+
T Consensus        85 Pnv~~~~G~i~~cL~~l~----~W~p~~~i~~vl~~i~~ll~~  123 (138)
T 1jat_B           85 PCVNPTTGEVQTDFHTLR----DWKRAYTMETLLLDLRKEMAT  123 (138)
T ss_dssp             TTBCTTTCBBCTTSHHHH----TCCTTCCHHHHHHHHHHHHTS
T ss_pred             CCEeCCCCEEeeecccCC----CCCCcCcHHHHHHHHHHHHcC
Confidence                   899  999984    699999999999999999965

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=99.95  E-value=5e-29  Score=216.15  Aligned_cols=113  Identities=27%  Similarity=0.353  Sum_probs=99.4

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCC-eEEec-CCCC--ceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---
Q 022719            9 KNPAVKRILQEVKEMQSNPSDD-FMSLP-LEEN--IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---   81 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~~g-i~~~p-~~~d--i~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---   81 (293)
                      ..++.+||++|+++|++++++| +.+.+ +++|  +++|+++|.||++|||+||+|+++|.||++||++||+|+|+|   
T Consensus        33 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~  112 (170)
T 2hlw_A           33 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN  112 (170)
T ss_dssp             CCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCC
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccc
Confidence            3568999999999999999888 66766 4554  999999999999999999999999999999999999999999   


Q ss_pred             --------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC--CCCChHH
Q 022719           82 --------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT--NPNGALG  122 (293)
Q Consensus        82 --------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~--~P~~~l~  122 (293)
                              |.||+++|+.+ +.|+|+++|++||.+|++||.+  |++++++
T Consensus       113 HPNV~~~~G~ICl~iL~~~-~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n  162 (170)
T 2hlw_A          113 MNGVNSSNGVVDPRAISVL-AKWQNSYSIKVVLQELRRLMMSKENMKLPQP  162 (170)
T ss_dssp             CSSBCSSSCBBCTTTCHHH-HTCCSSCCHHHHHHHHHHHHHSTTTSSSCCC
T ss_pred             cCCEeCCCCEEEhhhcCCC-CCCCccCcHHHHHHHHHHHHccCCCCCCCCC
Confidence                    99999999643 6799999999999999999954  5455443

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.79  E-value=5e-21  Score=164.32  Aligned_cols=87  Identities=17%  Similarity=0.290  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCC----------eEEEEeeCCCCCCCCCCeeeeec-
Q 022719           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGG----------IYHGRIQLPAEYPFKPPSFMLLT-   81 (293)
Q Consensus        13 ~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG----------~F~~~I~fP~dYP~~PP~v~F~T-   81 (293)
                      .+||++|++.|++      ++.+..+|++.|+++|.||.||+|+||          .|+++|.||++||++||+|+|.+ 
T Consensus        34 ~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~  107 (172)
T 2z6o_A           34 VQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPEL  107 (172)
T ss_dssp             HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred             HHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCC
Confidence            9999999999999      477888999999999999999999999          99999999999999999999966 


Q ss_pred             ----------ccceeccCCCCCC---CCCCcccHHHHHH
Q 022719           82 ----------TKICLSISNHHPE---HWQPSWSVRTALV  107 (293)
Q Consensus        82 ----------G~ICLsiL~~~pe---~W~P~~sI~~VL~  107 (293)
                                |+|||++|..  .   .|+|.++|.++|.
T Consensus       108 ~~~hpnmY~~G~ICLdIL~k--p~Ws~~~P~~~IahiL~  144 (172)
T 2z6o_A          108 DGKTAKMYRGGKICLTDHFK--PLWARNVPKFGLAHLMA  144 (172)
T ss_dssp             TTTCSSBCTTSBBCCCTTHH--HHHHHHTTSCCHHHHHH
T ss_pred             CCCCCCCCCCCcEechhhcc--ccccccCCccCHHHHHh
Confidence                      9999999941  3   3559999999984

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.37  E-value=4.7e-14  Score=118.93  Aligned_cols=80  Identities=21%  Similarity=0.441  Sum_probs=68.3

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCC----------eEEEEeeCCCCCCCCCCeeee
Q 022719           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGG----------IYHGRIQLPAEYPFKPPSFML   79 (293)
Q Consensus        10 ~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG----------~F~~~I~fP~dYP~~PP~v~F   79 (293)
                      ..=..||..||..|-+      ++..+.++-.+|...+.||.||+|.|+          .|.+.|.||.+||++||.|+|
T Consensus        33 ~~w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~F  106 (168)
T 3kpa_A           33 DKWTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIAL  106 (168)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeec
Confidence            3457899999999976      444554445689999999999999999          999999999999999999999


Q ss_pred             ec-----------ccceeccCCCCCCCCCCccc
Q 022719           80 LT-----------TKICLSISNHHPEHWQPSWS  101 (293)
Q Consensus        80 ~T-----------G~ICLsiL~~~pe~W~P~~s  101 (293)
                      .+           |+|||+++      |+|.|+
T Consensus       107 p~ldgkt~kmYr~GkICLdIh------wkPlW~  133 (168)
T 3kpa_A          107 PELEGKTVKMYRGGKICMTTH------FFPLWA  133 (168)
T ss_dssp             GGGTTTCSSEETTTEECCCTT------HHHHHH
T ss_pred             ccccCcCccccCCCcEEeccc------cchhhH
Confidence            98           99999975      777653

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.29  E-value=1e-11  Score=106.59  Aligned_cols=101  Identities=17%  Similarity=0.284  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHhhCCC---CCeEEecCCCCceEEEEEEeCCCCCCCCCCe---EEEEeeCCCCCCCCCCeeeee-------
Q 022719           14 KRILQEVKEMQSNPS---DDFMSLPLEENIFEWQFAIRGPGDTEFEGGI---YHGRIQLPAEYPFKPPSFMLL-------   80 (293)
Q Consensus        14 kRL~kElk~L~~~p~---~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~---F~~~I~fP~dYP~~PP~v~F~-------   80 (293)
                      +|..+|+..+.+.-+   +...+...++...++-+.+.|.-.++|+||.   |.+.|.||.+||++||.|.|.       
T Consensus        31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~  110 (162)
T 3r3q_A           31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN  110 (162)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred             hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence            677788887755331   1222344456666777777777779999999   889999999999999999883       


Q ss_pred             --------c------ccceeccCCCCCCCCCC-cccHHHHHHHHHHcCCC-CCC
Q 022719           81 --------T------TKICLSISNHHPEHWQP-SWSVRTALVALIAFMPT-NPN  118 (293)
Q Consensus        81 --------T------G~ICLsiL~~~pe~W~P-~~sI~~VL~~I~~lL~~-~P~  118 (293)
                              .      |+||+++|.    .|+| +.+|.++|.+|+++|.+ ||+
T Consensus       111 ~~~~~I~~hpnVD~~G~I~lpyL~----~W~p~~s~L~~ll~~l~~lf~ep~~d  160 (162)
T 3r3q_A          111 TISSSLPIQEYIDSNGWIALPILH----AWDPAAMNLIMVVQELMSLLHEPPQD  160 (162)
T ss_dssp             TSCTTSTHHHHBCTTSBBCCGGGG----SCCGGGCCHHHHHHHHHHTTSCCCCC
T ss_pred             ccccccCCCCCCCCCCcEeCcccc----cCCCCcCcHHHHHHHHHHHhcCCCCC
Confidence                    1      999999995    5998 78999999999999955 554

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=98.87  E-value=1.4e-09  Score=91.86  Aligned_cols=71  Identities=18%  Similarity=0.400  Sum_probs=62.7

Q ss_pred             CCCceEEEEEEeCCCCCCCCCCeEEE--EeeCCCCCCCCCCeeeeec----------------ccceeccCCCCCCCCCC
Q 022719           37 EENIFEWQFAIRGPGDTEFEGGIYHG--RIQLPAEYPFKPPSFMLLT----------------TKICLSISNHHPEHWQP   98 (293)
Q Consensus        37 ~~di~~W~~~I~GP~~TpYeGG~F~~--~I~fP~dYP~~PP~v~F~T----------------G~ICLsiL~~~pe~W~P   98 (293)
                      ..+++.|.++|.    .+|+|+.|.+  .|.||++||++||.| |++                |+||+.+|.    +|++
T Consensus        50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~----~W~~  120 (146)
T 3obq_A           50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH----EWKH  120 (146)
T ss_dssp             TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH----TCCT
T ss_pred             hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEeccccc----ccCC
Confidence            468999999997    6899999995  999999999999999 554                999999995    4987


Q ss_pred             -cccHHHHHHHHHHcCCCC
Q 022719           99 -SWSVRTALVALIAFMPTN  116 (293)
Q Consensus        99 -~~sI~~VL~~I~~lL~~~  116 (293)
                       ..+|.+++..++..|.++
T Consensus       121 ~~snL~~ll~~l~~~F~~e  139 (146)
T 3obq_A          121 PQSDLLGLIQVMIVVFGDE  139 (146)
T ss_dssp             TTCCHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHhhC
Confidence             899999999999998543

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.75  E-value=0.14  Score=40.77  Aligned_cols=88  Identities=16%  Similarity=0.157  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeecccceeccCCC
Q 022719           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTTKICLSISNH   91 (293)
Q Consensus        12 a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~TG~ICLsiL~~   91 (293)
                      ...+...|+..|+.--+..+....  .....+.+.|..-.+..-+.-.+.+.|.||.+||..||.+.+..          
T Consensus        11 ~~e~q~~EleaL~sIy~d~~~~~~--~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~----------   78 (128)
T 2ebm_A           11 YGEEQRNELEALESIYPDSFTVLS--ENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS----------   78 (128)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEECC--SSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE----------
T ss_pred             hHHHHHHHHHHHHHHccCceEEcc--CCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc----------
Confidence            356678899999875545554422  22355666665211222233478899999999999999997542          


Q ss_pred             CCCCCCCcccHHHHHHHHHHcC
Q 022719           92 HPEHWQPSWSVRTALVALIAFM  113 (293)
Q Consensus        92 ~pe~W~P~~sI~~VL~~I~~lL  113 (293)
                        ..|-+...+..+...|....
T Consensus        79 --~~~l~~~~~~~L~~~L~~~~   98 (128)
T 2ebm_A           79 --QENLEDNDVSDILKLLALQA   98 (128)
T ss_dssp             --ESSCCHHHHHHHHHHHHHHH
T ss_pred             --CCCCCHHHHHHHHHHHHHHH
Confidence              13555555555555555444

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=94.24  E-value=0.28  Score=39.49  Aligned_cols=67  Identities=16%  Similarity=0.253  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCC------CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719           13 VKRILQEVKEMQSNPSDDFMSLPLE------ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus        13 ~kRL~kElk~L~~~p~~gi~~~p~~------~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      ..+-..|+..|+.--+..+...-..      +....+.+.|....+ .-..-.+.+.|.||.+||..||.|.+.
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~   84 (138)
T 2yz0_A           12 YEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFK   84 (138)
T ss_dssp             HHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEE
T ss_pred             HHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEe
Confidence            4566788888887554444432211      124567777763222 111346789999999999999999865

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=94.18  E-value=0.2  Score=39.89  Aligned_cols=68  Identities=18%  Similarity=0.234  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCC--CCceEEEEEEeCCCCCCCC--CCeEEEEeeCCCCCCCCCCeeeeec
Q 022719           14 KRILQEVKEMQSNPSDDFMSLPLE--ENIFEWQFAIRGPGDTEFE--GGIYHGRIQLPAEYPFKPPSFMLLT   81 (293)
Q Consensus        14 kRL~kElk~L~~~p~~gi~~~p~~--~di~~W~~~I~GP~~TpYe--GG~F~~~I~fP~dYP~~PP~v~F~T   81 (293)
                      .+...|+..|+.--+..+......  .+...+.+.|..+.+..-+  .-.+.+.|.||.+||..+|.+.+.+
T Consensus        11 e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~   82 (128)
T 2day_A           11 WVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   82 (128)
T ss_dssp             CHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence            357889998887555556543322  2345556666532221111  2367899999999999999998663

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=91.04  E-value=1.3  Score=38.43  Aligned_cols=83  Identities=13%  Similarity=0.271  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeecccceeccCCCCC
Q 022719           14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTTKICLSISNHHP   93 (293)
Q Consensus        14 kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~TG~ICLsiL~~~p   93 (293)
                      .+|.+|+..|-=+.     +.-.+.++...++.+..-.     |....++|.++.+||.+||.+..--     ...  .-
T Consensus         4 ~~li~Ei~~iGW~~-----l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~Dl-----P~~--~~   66 (186)
T 3zqs_A            4 SSLIEEIGTLGWDK-----LVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDF-----PVP--FC   66 (186)
T ss_dssp             CSHHHHHHHHCGGG-----EEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCC-----SSC--CC
T ss_pred             HHHHHHHHHhCCce-----eeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcC-----CCC--cc
Confidence            46888999883332     2223567889999998433     6788999999999999999875321     111  11


Q ss_pred             CCCCCcccHHHHHHHHHHcC
Q 022719           94 EHWQPSWSVRTALVALIAFM  113 (293)
Q Consensus        94 e~W~P~~sI~~VL~~I~~lL  113 (293)
                      -.|.+..++.+++..++..|
T Consensus        67 ~~w~~~ssL~~v~~qF~~~L   86 (186)
T 3zqs_A           67 ASWTPQSSLISIYSQFLAAI   86 (186)
T ss_dssp             CCCCTTCCHHHHHHHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHH
Confidence            46999999999888877666

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=90.25  E-value=1.4  Score=35.21  Aligned_cols=67  Identities=19%  Similarity=0.200  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCC-----CceEEEEEEeCCCC-CCC-CCCeEEEEeeCCCCCCCCCCeeeee
Q 022719           13 VKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGD-TEF-EGGIYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus        13 ~kRL~kElk~L~~~p~~gi~~~p~~~-----di~~W~~~I~GP~~-TpY-eGG~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      ..+...|+..|+.--+..+.......     ....+.+.|. |.+ .-- ..-.+.+.|.||.+||..+|.|.+.
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~   85 (137)
T 1ukx_A           12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK   85 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred             HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence            45678899888875545554432211     1345566665 221 100 1236889999999999999999764

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.79  E-value=1  Score=35.64  Aligned_cols=66  Identities=12%  Similarity=0.112  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhhCCCC--CeEEecC-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719           14 KRILQEVKEMQSNPSD--DFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus        14 kRL~kElk~L~~~p~~--gi~~~p~-~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      .+...|+..|+.--+.  .+..... ..+...+.+.|.. .+..=..-.+.+.|.||.+||..||.+.+.
T Consensus        10 e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~   78 (128)
T 2ebk_A           10 EPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISIN   78 (128)
T ss_dssp             HHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence            3567788888763322  3332211 1234577777763 221001236889999999999999998643

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=86.16  E-value=3.9  Score=33.69  Aligned_cols=44  Identities=11%  Similarity=0.126  Sum_probs=30.1

Q ss_pred             eEEEEeeCCCCCCCCCCeeeeecccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC
Q 022719           59 IYHGRIQLPAEYPFKPPSFMLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT  115 (293)
Q Consensus        59 ~F~~~I~fP~dYP~~PP~v~F~TG~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~  115 (293)
                      .+.++|.||.+||..+|.|...             ..|-...-...+...|...+.+
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~-------------~~~l~~~~~~~L~~~L~~~l~~  119 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGR-------------SSELDRHQQLLLNKGLTSYIGT  119 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEE-------------CSSSCHHHHHHHHHHHHHHHTT
T ss_pred             eEEEEEEcCCCCCCCCCcEEEE-------------eCCCCHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999754             1243333344455556666533

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=82.63  E-value=1.4  Score=36.09  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             eEEEEeeCCCCCCCCCCeeeee
Q 022719           59 IYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus        59 ~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      .+.+.|.||.+||..||.+.+.
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~   95 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVR   95 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEE
T ss_pred             eEEEEEECCCCCCCCCCeEEEE
Confidence            5889999999999999999755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	293
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	4e-31
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	7e-25
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	4e-24
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	8e-24
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	8e-23
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	2e-22
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	5e-22
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	1e-21
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	1e-21
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	5e-21
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	8e-21
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	1e-19
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	1e-19
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	2e-19
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	3e-19
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-19
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	6e-19
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	1e-18
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	2e-18
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-18
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	4e-18
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	5e-18
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	3e-17
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-17
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	4e-17
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	4e-17
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	5e-17
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	6e-17
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	6e-17
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	4e-14
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	2e-05

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score =  111 bits (279), Expect = 4e-31
 Identities = 53/137 (38%), Positives = 81/137 (59%), Gaps = 9/137 (6%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A +R+ Q+   ++ +P     + PL  NI EW + +RGP  T +EGG YHG++  P E+P
Sbjct: 2   ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 61

Query: 72  FKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 123
           FKPPS  ++T        T++CLSI++ HP+ W P+WSV T L  L++FM       LGS
Sbjct: 62  FKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM-VEKGPTLGS 120

Query: 124 LDYKKEERRALAIKSRE 140
           ++     +R LA++S  
Sbjct: 121 IETSDFTKRQLAVQSLA 137

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 94.7 bits (235), Expect = 7e-25
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 18/125 (14%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           K P   R+L+E+++ +     +  S  L +     + +W   I GP  +  E  IY   I
Sbjct: 2   KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSI 61

Query: 65  QLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIAFM 113
                YP  PP    ++            ++      H    W+ ++++ T L+ L   M
Sbjct: 62  DCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF--HTLRDWKRAYTMETLLLDLRKEM 119

Query: 114 PTNPN 118
              P 
Sbjct: 120 -ATPA 123

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 93.3 bits (231), Expect = 4e-24
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 10/144 (6%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           PA +R++++ K M+ +      + PL +N+  W   I GP DT +E G +   ++   EY
Sbjct: 3   PARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62

Query: 71  PFKPPSFMLLTT-------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
           P KPP    L+               +     W P++ V + L ++ +     NP     
Sbjct: 63  PNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPAN 122

Query: 123 SLDYK--KEERRALAIKSREAAPK 144
                  K+ +     + +E   K
Sbjct: 123 VEAATLFKDHKSQYVKRVKETVEK 146

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 92.3 bits (229), Expect = 8e-24
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 14/122 (11%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           P   R+L+E++E Q    D  +S  LE+     +  W   I GP  T +E  IY  +I+ 
Sbjct: 5   PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIEC 64

Query: 67  PAEYPFKPPSFMLLT----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTN 116
             +YP  PP    +T            +    +      WQ S+S++  L  L   M + 
Sbjct: 65  GPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSK 124

Query: 117 PN 118
            N
Sbjct: 125 EN 126

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 8e-23
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 17/116 (14%)

Query: 12  AVKRILQEVKEMQSNPSDDFM--SLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
             KR+ +E+  +Q++P          ++ +I +W   + G   T +EG  +    +  + 
Sbjct: 4   MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSR 63

Query: 70  YPFKPPSFMLLT------------TKICLSISNHHPEHWQPSWSVRTALVALIAFM 113
           YPF  P  M                 ICLSI     E W P+ SV++  +++I+ +
Sbjct: 64  YPFDSPQVMFTGENIPVHPHVYSNGHICLSILT---EDWSPALSVQSVCLSIISML 116

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 89.0 bits (220), Expect = 2e-22
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 10/140 (7%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           P+ +R++++ K++Q +P       P E+NI  W+  I GP +T FE G +   ++   EY
Sbjct: 3   PSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEY 62

Query: 71  PFKPPSFMLLTTKICLSIS-------NHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
           P KPP+   ++     ++        +     W P++ V   L ++ + +   NPN    
Sbjct: 63  PNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPAN 122

Query: 123 SLDYK--KEERRALAIKSRE 140
           SL  +  +E RR    + ++
Sbjct: 123 SLAAQLYQENRREYEKRVQQ 142

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 86.3 bits (213), Expect = 5e-22
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 14/110 (12%)

Query: 15  RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKP 74
           RI +E+    +NP  +        NI  W     G  +T +   +Y  +I  P +YP KP
Sbjct: 2   RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 61

Query: 75  PSFMLLT-----------TKICLSISNHHPEHWQPSWSVRTALVALIAFM 113
           P    L              ICLS+     + + PS S+   ++++I+ +
Sbjct: 62  PIVYFLQKPPKHTHVYSNGDICLSLLG---DDYNPSLSISGLVLSIISML 108

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 86.3 bits (213), Expect = 1e-21
 Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 22/124 (17%)

Query: 15  RILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
            + +++ E+  NP + F +  +++ +++ W+  I GP DT +EGG++   +  P +YP +
Sbjct: 3   LLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLR 62

Query: 74  PPSFMLLTT----------KICLSISNH----------HPEHWQPSWSVRTALVALIAFM 113
           PP    +T            +C+SI +             E W P  +V T ++++I+ +
Sbjct: 63  PPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML 122

Query: 114 PTNP 117
             +P
Sbjct: 123 -ADP 125

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 86.4 bits (213), Expect = 1e-21
 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 15/145 (10%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           +R+++E++E++     +F ++ + E N+  WQ  I  P +  ++ G +   I  PAEYPF
Sbjct: 2   RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPF 60

Query: 73  KPPSFMLLTT--------KICLSISNHHPEHWQPSWSVRTALVALIAFM----PTNPNGA 120
           KPP     T         K  + +     E+W+P+      + +LIA +    P +P  A
Sbjct: 61  KPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA 120

Query: 121 LGSLDYKKEERRALAIKSREAAPKF 145
             + +Y K +R+     + E   K+
Sbjct: 121 DLAEEYSK-DRKKFCKNAEEFTKKY 144

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 84.8 bits (209), Expect = 5e-21
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 10/144 (6%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E++++  +P     + P+ +++F WQ  I GP ++ ++GG++   I  P +YP
Sbjct: 2   ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 61

Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGAL 121
           FKPP     T            ICL I             V  ++ +L+     +     
Sbjct: 62  FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121

Query: 122 GSLDYKKEERRALAIKSREAAPKF 145
                 K +R      +RE   K+
Sbjct: 122 EIARIYKTDRERYNQLAREWTQKY 145

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 84.8 bits (209), Expect = 8e-21
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
           ++   KR+ QE++ +  +      + P  +N+F+W   + GP DT +E   Y   ++ P+
Sbjct: 7   RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPS 66

Query: 69  EYPFKPPSFMLLTTKICLSIS-------NHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           +YP+KPP     T     ++        +   E+W  S+ VRT L++L + +   PN
Sbjct: 67  DYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLL-GEPN 122

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 1e-19
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 16/151 (10%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + + KRI +E+ E+  +P  +  + P  +NI+EW+  I GP  + +EGG++   I    +
Sbjct: 1   STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPD 60

Query: 70  YPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPN 118
           YPFKPP     T            ICL I     ++W P+ ++   L+++ + +   NP 
Sbjct: 61  YPFKPPKVTFRTRIYHCNINSQGVICLDI---LKDNWSPALTISKVLLSICSLLTDCNPA 117

Query: 119 GALGSLDYK--KEERRALAIKSREAAPKFGT 147
             L           R      +R+   ++ T
Sbjct: 118 DPLVGSIATQYMTNRAEHDRMARQWTKRYAT 148

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 1e-19
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 11/119 (9%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
             A   + ++  +++ N      + P+ E++ EW+  I G  ++ ++G ++   I   +E
Sbjct: 3   GRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSE 62

Query: 70  YPFKPPSFMLLTTKICLSIS----------NHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           Y + PP    +T     ++             +PE W  ++++ + L+AL   + +NP 
Sbjct: 63  YNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVML-SNPV 120

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 80.6 bits (198), Expect = 2e-19
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 19/152 (12%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 3   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 62

Query: 67  PAEYPFKPPSFMLLT----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT- 115
             +YP  PP                  + LSI     + W+P+ +++  L+ +   +   
Sbjct: 63  KDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSIL-EEDKDWRPAITIKQILLGIQELLNEP 121

Query: 116 NPNGALGSLDYK--KEERRALAIKSREAAPKF 145
           N      +  Y    + R     + R  A KF
Sbjct: 122 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 153

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 80.2 bits (197), Expect = 3e-19
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 10/150 (6%)

Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           NL    ++ + +EV  + ++P D     P EE++ + Q  I GP  T + GG++  ++ L
Sbjct: 2   NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLL 61

Query: 67  PAEYPFKPPSFMLLTTKICLSIS-------NHHPEHWQPSWSVRTALVALIAFMPT-NPN 118
             ++P  PP    LT     ++        N     W     +R  L+ +   +   NP 
Sbjct: 62  GKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPE 121

Query: 119 GALGSLDYK--KEERRALAIKSREAAPKFG 146
            AL     +   E     A ++R      G
Sbjct: 122 SALNEEAGRLLLENYEEYAARARLLTEIHG 151

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 80.2 bits (197), Expect = 3e-19
 Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 10/146 (6%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65

Query: 74  PPSFMLLTT-------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGSLD 125
            P    LT        ++     +    +W P+  +RT L+++ A + + NPN  L +  
Sbjct: 66  APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDV 125

Query: 126 YK--KEERRALAIKSREAAPKFGTPE 149
            +   +  +    K+RE    +   +
Sbjct: 126 AEDWIKNEQGAKAKAREWTKLYAKKK 151

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 79.4 bits (195), Expect = 6e-19
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           P  KR+ QE+  +  +      + P  +N+F+W   I G   T +E   Y   ++ P+ Y
Sbjct: 1   PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 60

Query: 71  PFKPPSFMLLTTKICLSIS-------NHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           P+  P+   LT     ++        +   E W   + VRT L+++ + +   PN
Sbjct: 61  PYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLL-GEPN 114

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 79.0 bits (194), Expect = 1e-18
 Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 31/152 (20%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           +   + +++ +M+  P D F +  +++ +I++W+  + GP DT +EGG +   +  P +Y
Sbjct: 1   SSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDY 60

Query: 71  PFKPPSFMLLT--------TKICLSISNHHPEH------------WQPSWSVRTALVALI 110
           P KPP    ++         +  + IS  H               W P  +V T L+++I
Sbjct: 61  PQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVI 120

Query: 111 AFMPTNPN---------GALGSLDYKKEERRA 133
           + + T+PN           +   +Y + +++ 
Sbjct: 121 SML-TDPNFESPANVDAAKMQRENYAEFKKKV 151

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 78.4 bits (192), Expect = 2e-18
 Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 14/152 (9%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
              R+ +E+  + + P         ++ + + +  I G  +T +E G++   + +P  YP
Sbjct: 3   RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYP 62

Query: 72  FKPPSFMLLTT----------KICLSISNHHPEHWQ-PSWSVRTALVALIAFMPT-NPNG 119
           F+PP    LT           +ICL +    P+    PS ++ T L ++   M   NP+ 
Sbjct: 63  FEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDD 122

Query: 120 ALGSLDYK--KEERRALAIKSREAAPKFGTPE 149
            L +      K  + A    +R+   K    +
Sbjct: 123 PLMADISSEFKYNKPAFLKNARQWTEKHARQK 154

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 78.3 bits (192), Expect = 2e-18
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 12/148 (8%)

Query: 12  AVKRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
             KRI++E++ ++ +P+    +    E +I   +    GP  T +EGG +   I++P EY
Sbjct: 2   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 71  PFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGAL 121
           PFKPP     T        +       +     W P  ++++AL++L A + +  PN   
Sbjct: 62  PFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQ 121

Query: 122 GSLDYK--KEERRALAIKSREAAPKFGT 147
            +   +    +R +    +      + +
Sbjct: 122 DAEVAQHYLRDRESFNKTAALWTRLYAS 149

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.2 bits (189), Expect = 5e-18
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSL---PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           N AV+RI +E KE+  +       +    ++EN  E +  I GP DT +EGG Y   I++
Sbjct: 3   NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 62

Query: 67  PAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           P  YPF PP    +T        +       +   + W  + ++RT L++L A +     
Sbjct: 63  PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALL-AAAE 121

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (183), Expect = 3e-17
 Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 15/127 (11%)

Query: 5   RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG-- 62
           +Y  ++    R    V  +  +      S    +        + G     + G  Y+   
Sbjct: 12  KYKYRD-LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPI 70

Query: 63  RIQLPAEYPFKPPSFMLLTTK---------ICLSISNHHP---EHWQPSWSVRTALVALI 110
            + L   YP+ PP   +  T          +  +   + P   E   P   +   +  +I
Sbjct: 71  CLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMI 130

Query: 111 AFMPTNP 117
                 P
Sbjct: 131 VVFGDEP 137

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 75.2 bits (184), Expect = 3e-17
 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 31/154 (20%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
             A KR+L+E++++  +     ++ P  E NIF W   I+GP DT +  G+++ +++ P 
Sbjct: 2   KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 61

Query: 69  EYPFKPPSFMLL----------TTKICLSI----------SNHHPEHWQPSWSVRTALVA 108
           +YP  PP                 ++C+SI               E W P  SV   L++
Sbjct: 62  DYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS 121

Query: 109 LIAFMPTNPN---------GALGSLDYKKEERRA 133
           +++ + + PN           L   +  + ER+ 
Sbjct: 122 VMSML-SEPNIESGANIDACILWRDNRPEFERQV 154

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 74.7 bits (183), Expect = 4e-17
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 10/116 (8%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A  RI +++ E+    + D  S    +++  ++  I  P +  ++ G +    ++   
Sbjct: 2   SAAQLRIQKDINELNLPKTCDI-SFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 59

Query: 70  YPFKPPSFMLLTTKICLSISNH-------HPEHWQPSWSVRTALVALIAFMPTNPN 118
           YP  PP     T     +I            E W+P  ++ + +  L       PN
Sbjct: 60  YPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLF-LEPN 114

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 74.8 bits (183), Expect = 4e-17
 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 26/158 (16%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           + +R   +   + ++    + S    + + E+    +GP  T +E G +   +QLP++YP
Sbjct: 1   SNRRREMDYMRLCNSTRKVYPS----DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYP 56

Query: 72  FKPPSFMLLTT--------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN----- 118
           FK PS              +      +   + W P + +       +  +   PN     
Sbjct: 57  FKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPL 116

Query: 119 ----GALGSLDYKKEERRALAIKSREAAPKFGTPERQK 152
                 L   D    +        RE      TP++  
Sbjct: 117 NVQAAHLLHADRVGFDALL-----REHVSTHATPQKAL 149

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 5e-17
 Identities = 15/150 (10%), Positives = 49/150 (32%), Gaps = 27/150 (18%)

Query: 11  PAVKRILQEVKEMQSNPSDD---FMSLPLEENIFEWQFAIRG-PGDTEFEGGI------- 59
            A  R+++E++++  + S     +    + +++++W   ++    D+     +       
Sbjct: 4   QASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKE 63

Query: 60  ----YHGRIQLPAEYPFKPPSFMLLTTKIC---------LSISNHHPEHWQPSWSVRTAL 106
                         +PF PP   ++   +          L +     + W  ++S+ + +
Sbjct: 64  GIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVI 123

Query: 107 VALIAFM---PTNPNGALGSLDYKKEERRA 133
           + + A +               Y     + 
Sbjct: 124 MQINATLVKGKARVQFGANKNQYNLARAQQ 153

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 74.0 bits (181), Expect = 6e-17
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 14/115 (12%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 5   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 64

Query: 74  PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
            P    +T           +ICL I     + W P+  +RT L+++ A + + PN
Sbjct: 65  APKVRFMTKIYHPNVDKLGRICLDI---LKDKWSPALQIRTVLLSIQALL-SAPN 115

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 74.5 bits (182), Expect = 6e-17
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 22/126 (17%)

Query: 14  KRILQEVKEMQ-------------SNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
            R+L+E+ ++Q              + S    +  +  +I  W+  I GP  T +EGG +
Sbjct: 4   ARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHF 63

Query: 61  HGRIQLPAEYPFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAF 112
              I +P +YP+ PP    +T        ++      +     W P+ ++RTAL+++ A 
Sbjct: 64  TLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAM 123

Query: 113 MPTNPN 118
           +  +P 
Sbjct: 124 L-ADPV 128

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 4e-14
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 11/116 (9%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A  R+++E++++Q  P     +L  ++ N+  W   +  P    +    ++ RI  P EY
Sbjct: 1   ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEY 59

Query: 71  PFKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
           PFKPP     T            + +     E+W+P       L AL   +   PN
Sbjct: 60  PFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLV-NRPN 114

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 31/130 (23%)

Query: 13  VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG---RIQLPAE 69
              +L     ++  P     +    +   +   +I G   T  +G   H     + +P+ 
Sbjct: 28  SLALLDNFHSLR--PRTRVFTHS--DGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSM 83

Query: 70  YPFKPPSFMLLTT---------------------KICLSISNHHPEHWQPSWSVRTALVA 108
           YP KPP   +                         I L I +        + ++   +  
Sbjct: 84  YPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILH---CWDPAAMNLIMVVQE 140

Query: 109 LIAFMPTNPN 118
           L++ +   P 
Sbjct: 141 LMSLLHEPPQ 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	99.97
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	99.97
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.96
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.95
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.94
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.93
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.59
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.39
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	96.72
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	94.68
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	83.46
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	82.98
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	81.62

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=2.2e-36  Score=253.96  Aligned_cols=135  Identities=28%  Similarity=0.596  Sum_probs=126.1

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--------
Q 022719           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--------   81 (293)
Q Consensus        10 ~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--------   81 (293)
                      +.+.|||++|+++|+++++.|+++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|+|        
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~   80 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNIN   80 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceEC
Confidence            368899999999999999999999999999999999999999999999999999999999999999999999        


Q ss_pred             --ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 --TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 --G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                        |.||+++|.   ++|+|.++|.+||.+|+.||.+ +++++++  |+.++.+|+++|.++||+|++|||+
T Consensus        81 ~~G~iCl~~l~---~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~k~A~  148 (148)
T d1y6la_          81 SQGVICLDILK---DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  148 (148)
T ss_dssp             TTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCeEEEEecC---CcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence              999999997   8899999999999999999955 5566655  5677789999999999999999985

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=2.3e-36  Score=255.23  Aligned_cols=138  Identities=25%  Similarity=0.520  Sum_probs=128.0

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----
Q 022719            6 YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----   81 (293)
Q Consensus         6 ~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----   81 (293)
                      .||+..++|||++|+++|++++++|+++.|.++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|    
T Consensus         1 ~~~~~~~~kRl~kEl~~l~~~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (151)
T d1zdna1           1 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFH   80 (151)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCC
Confidence            3799999999999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             ------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhC
Q 022719           82 ------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  146 (293)
Q Consensus        82 ------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya  146 (293)
                            |.+|++++.   +.|+|+++|++||.+|+++|.+ +++++++  +++++.+|++.|.++||+|+++|+
T Consensus        81 PnI~~~G~ic~~~l~---~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~ar~~~~~~g  151 (151)
T d1zdna1          81 PNVGANGEICVNVLK---RDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  151 (151)
T ss_dssp             TTBCTTSBBCHHHHT---TTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ceecCCCCccccccc---ccCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence                  999999997   8899999999999999999954 4444443  456778999999999999999985

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=5.5e-36  Score=250.72  Aligned_cols=133  Identities=29%  Similarity=0.660  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---------
Q 022719           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------   81 (293)
Q Consensus        11 ~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------   81 (293)
                      .|+|||++|+++|+++++.||++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|+|         
T Consensus         1 ~a~kRL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~   80 (147)
T d1z2ua1           1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS   80 (147)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             CHHHHHHHHHHHHHhCCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeECC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999         


Q ss_pred             -ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhC
Q 022719           82 -TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  146 (293)
Q Consensus        82 -G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya  146 (293)
                       |.||+++|+   ++|+|++++.+||.+|+++|.+ +++++++  ++.++.+|+++|.++||+|++||+
T Consensus        81 ~G~iCl~~l~---~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~k~A  146 (147)
T d1z2ua1          81 NGSICLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA  146 (147)
T ss_dssp             TCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCEeeehhc---ccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence             999999998   7899999999999999999954 5555544  457778999999999999999997

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=4.2e-36  Score=252.99  Aligned_cols=137  Identities=26%  Similarity=0.570  Sum_probs=126.5

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-------
Q 022719            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-------   81 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-------   81 (293)
                      |.+|.|||++|+++|+++++.||++.|.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|       
T Consensus         1 st~A~kRl~~El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI   80 (153)
T d1ayza_           1 STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV   80 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             CCHHHHHHHHHHHHHhHCCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccCC
Confidence            5689999999999999999999999999999999999999999999999999999999999999999999999       


Q ss_pred             ---ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719           82 ---TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  148 (293)
Q Consensus        82 ---G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~  148 (293)
                         |.||+++|.   +.|+|.++|++||.+|++||.+ +++++++  ++.++.+++++|.+++|+|++++...
T Consensus        81 ~~~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~~~~~~~f~~~~~~~~~ks~~~  150 (153)
T d1ayza_          81 YANGEICLDILQ---NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWED  150 (153)
T ss_dssp             CTTSBBCCGGGT---TTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccccccc---ccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               999999997   8999999999999999999965 4555544  56778899999999999999988643

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=1.5e-35  Score=249.28  Aligned_cols=134  Identities=28%  Similarity=0.637  Sum_probs=124.2

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-------
Q 022719            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-------   81 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-------   81 (293)
                      |.+|.|||++|+++|+++++.|+++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|       
T Consensus         1 ~~pa~rRl~~E~~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI   80 (149)
T d1z3da1           1 TTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNV   80 (149)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             CCHHHHHHHHHHHHHhhCCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccceeE
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999999       


Q ss_pred             ---ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhh
Q 022719           82 ---TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKF  145 (293)
Q Consensus        82 ---G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~ky  145 (293)
                         |.||+++|+   +.|+|+++|.+||.+|++||.+ +++++++  |+.++.+|+++|.++||+|+++.
T Consensus        81 ~~~G~iCl~~l~---~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~ks  147 (149)
T d1z3da1          81 YADGSICLDILQ---NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS  147 (149)
T ss_dssp             CTTCBBCCGGGT---TSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEecccc---ccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               999999997   7899999999999999999964 5555544  56777899999999999999874

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=250.05  Aligned_cols=138  Identities=24%  Similarity=0.477  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---------
Q 022719           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------   81 (293)
Q Consensus        11 ~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------   81 (293)
                      .+.+||++|+++|++++++||++.|.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|+|         
T Consensus         2 ~~~~Rl~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~~   81 (154)
T d1yh2a1           2 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS   81 (154)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             cHHHHHHHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCcCC
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999         


Q ss_pred             -ccceeccCCCCC-CCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719           82 -TKICLSISNHHP-EHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  148 (293)
Q Consensus        82 -G~ICLsiL~~~p-e~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~  148 (293)
                       |.||+++|+.+. +.|+|.+++++||.+|++||.+ +++++.+  |+.++.+|++.|.++||+|++||+..
T Consensus        82 ~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~k~a~~  153 (154)
T d1yh2a1          82 AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ  153 (154)
T ss_dssp             TCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence             999999998543 5899999999999999999954 5555544  46777899999999999999999863

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=249.27  Aligned_cols=132  Identities=28%  Similarity=0.564  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------c
Q 022719           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------T   82 (293)
Q Consensus        13 ~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------G   82 (293)
                      .|||++|+++|+++++.||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|          |
T Consensus         4 ~kRl~kEl~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G   83 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG   83 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             cHHHHHHHHHHHhCCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECCCC
Confidence            389999999999999999999999999999999999999999999999999999999999999999999          9


Q ss_pred             cceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           83 KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        83 ~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                      .||+++|.   +.|+|.+++.+||.+|++||.+ +++++++  |+.++.+|+++|.++||+|+++||.
T Consensus        84 ~icl~~l~---~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~ar~~~~kyA~  148 (149)
T d1j7db_          84 RICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM  148 (149)
T ss_dssp             BBCCGGGT---TSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             cEehHHhc---CCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence            99999997   7899999999999999999954 5566655  5677789999999999999999985

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-35  Score=249.27  Aligned_cols=137  Identities=31%  Similarity=0.544  Sum_probs=126.0

Q ss_pred             CChHHHHHHHHHHHHHhhCC---CCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---
Q 022719            8 LKNPAVKRILQEVKEMQSNP---SDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---   81 (293)
Q Consensus         8 ms~~a~kRL~kElk~L~~~p---~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---   81 (293)
                      |++.+.+||++|+++|++++   ..++.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|   
T Consensus         1 Ms~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (154)
T d2bepa1           1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   80 (154)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             CchHHHHHHHHHHHHHHHCCCCCCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCC
Confidence            88999999999999998764   578999999999999999999999999999999999999999999999999999   


Q ss_pred             --------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 --------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 --------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                              |.+|++++.   +.|+|+++|.+||.+|++||.+ +++++++  ++.++.+|++.|.++||+|++|||+
T Consensus        81 Hpni~~~~g~ic~~~~~---~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~t~k~A~  154 (154)
T d2bepa1          81 HPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG  154 (154)
T ss_dssp             BTTBCTTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CCCeeCCCCcccccccc---ccCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence                    999999997   8999999999999999999954 5555543  4677789999999999999999985

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=3e-35  Score=250.83  Aligned_cols=139  Identities=24%  Similarity=0.549  Sum_probs=125.0

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecC-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec------
Q 022719            9 KNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT------   81 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~~gi~~~p~-~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T------   81 (293)
                      |..|.|||++|+++|++++++||++.|. ++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|      
T Consensus         1 s~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   80 (164)
T d2ucza_           1 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPN   80 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTT
T ss_pred             CHHHHHHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceece
Confidence            5689999999999999999999999985 579999999999999999999999999999999999999999999      


Q ss_pred             ----ccceeccCCCC----------CCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhh
Q 022719           82 ----TKICLSISNHH----------PEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  144 (293)
Q Consensus        82 ----G~ICLsiL~~~----------pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~k  144 (293)
                          |+||+++|+..          ++.|+|+++|++||.+|+.||.+ +++++++  |+.++.+|+++|.++||+++.|
T Consensus        81 v~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~~r~~~~k  160 (164)
T d2ucza_          81 IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILK  160 (164)
T ss_dssp             BCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             EcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Confidence                99999999642          46799999999999999999954 4455544  5677789999999999999998


Q ss_pred             hCC
Q 022719          145 FGT  147 (293)
Q Consensus       145 ya~  147 (293)
                      +.+
T Consensus       161 ~~~  163 (164)
T d2ucza_         161 SLG  163 (164)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            753

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=2.9e-35  Score=249.71  Aligned_cols=136  Identities=24%  Similarity=0.489  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCC-----CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----
Q 022719           11 PAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----   81 (293)
Q Consensus        11 ~a~kRL~kElk~L~~~p~~gi~~~p~~~-----di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----   81 (293)
                      .|++||++|+++|+++++.|+++.|.++     |+++|+++|.||+||||+||+|+|+|.||++||++||+|+|+|    
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccc
Confidence            4899999999999999999999999865     9999999999999999999999999999999999999999999    


Q ss_pred             ------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 ------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 ------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                            |.+|+++|.. .++|+|+++|.+||.+|+++|.+ +++++++  ++.++.+++++|.++||+|++|||.
T Consensus        82 PnV~~~G~icl~~l~~-~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~k~A~  155 (156)
T d2uyza1          82 PNVYPSGTVSLSILEE-DKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP  155 (156)
T ss_dssp             TTBCTTSBBCCGGGCT-TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             ccccccceeeecccCc-ccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHCC
Confidence                  9999999963 26899999999999999999954 4555443  4667789999999999999999985

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=2.1e-35  Score=249.54  Aligned_cols=134  Identities=28%  Similarity=0.592  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------
Q 022719           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------   81 (293)
Q Consensus        12 a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------   81 (293)
                      +.|||++|+++|++++++||++.|.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|+|          
T Consensus         4 ~~rRl~~E~~~l~~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~   83 (152)
T d1jata_           4 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL   83 (152)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCCCC
Confidence            3599999999999999999999999999999999999999999999999999999999999999999999          


Q ss_pred             ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719           82 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  148 (293)
Q Consensus        82 G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~  148 (293)
                      |.+|++++.   +.|+|.++|.+||.+|++||.+ +++++++  |+.++.+|++.|.++||+|+++|+..
T Consensus        84 G~icl~~~~---~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~d~~~f~~~~r~~~~~~a~~  150 (152)
T d1jata_          84 GRICLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK  150 (152)
T ss_dssp             CCBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred             CCeeecccc---ccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence            999999998   7899999999999999999954 5555554  56777899999999999999999863

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=4.5e-35  Score=246.01  Aligned_cols=133  Identities=26%  Similarity=0.475  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---------
Q 022719           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------   81 (293)
Q Consensus        11 ~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------   81 (293)
                      ++.|||++|+++|++++++|+++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|+|         
T Consensus         1 p~~kRl~~El~~l~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~   80 (146)
T d1i7ka_           1 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT   80 (146)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999         


Q ss_pred             -ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 -TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 -G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                       |.||+++|.   +.|+|+++|++||.+|++||.+ +++++++  |+.++ +|+++|.+++|+++.||++
T Consensus        81 ~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~-~n~~~f~k~~~~~~~K~~~  146 (146)
T d1i7ka_          81 QGNISLDILK---EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVT  146 (146)
T ss_dssp             TCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC
T ss_pred             CCcccccccc---ccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHh-hCHHHHHHHHHHHHHccCC
Confidence             999999997   8999999999999999999954 5555544  45677 5899999999999999974

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=1.7e-34  Score=242.60  Aligned_cols=133  Identities=27%  Similarity=0.522  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEec-CCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---------
Q 022719           12 AVKRILQEVKEMQSNPSDDFMSLP-LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------   81 (293)
Q Consensus        12 a~kRL~kElk~L~~~p~~gi~~~p-~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------   81 (293)
                      +.|||++|+++|++++++||++.+ .++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|+|         
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~   81 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCcccC
Confidence            579999999999999999999975 5679999999999999999999999999999999999999999999         


Q ss_pred             --ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 --TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 --G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                        |.+|++++.   ++|+|+++|++||.+|++||.+ +++++++  |+.++.+|+++|.++||+|+++||+
T Consensus        82 ~~~~~~~~~~~---~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~k~A~  149 (149)
T d1fzya_          82 VTGAICLDILK---NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             TTCCBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             Ccceeechhhc---ccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence              789999887   8999999999999999999954 5566655  4677789999999999999999984

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=5.8e-34  Score=241.70  Aligned_cols=139  Identities=27%  Similarity=0.520  Sum_probs=122.6

Q ss_pred             CCCcCCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus         1 ma~~~~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      |+..+.+.  .+.|||++|+++|++++++||++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|+
T Consensus         1 m~~~~~~~--~~~kRl~kEl~~l~~~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~   78 (156)
T d2e2ca_           1 MTTSKERH--SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFT   78 (156)
T ss_dssp             CCCCCSCC--CHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             CCCCcccc--hHHHHHHHHHHHHhHCCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeecc
Confidence            66444444  3689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhh
Q 022719           81 T----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKF  145 (293)
Q Consensus        81 T----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~ky  145 (293)
                      |          |.||+++|.   +.|+|.++|.+||.+|++||.+ +++++++  ++.+++ ++.+|.+++|+.+.+.
T Consensus        79 t~i~Hpnv~~~G~icl~~l~---~~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~~-n~~~y~k~~~e~~~~~  152 (156)
T d2e2ca_          79 TPCWHPNVDQSGNICLDILK---ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYKTA  152 (156)
T ss_dssp             SCCCBTTBCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             ccCcCCCCCCCCCccccccC---CCCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-CHHHHHHHHHHHHHHH
Confidence            9          999999997   8899999999999999999954 5555554  356664 6678999999987654

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=4.2e-34  Score=243.79  Aligned_cols=133  Identities=26%  Similarity=0.537  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHhh-------------CCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeee
Q 022719           12 AVKRILQEVKEMQS-------------NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFM   78 (293)
Q Consensus        12 a~kRL~kElk~L~~-------------~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~   78 (293)
                      ..+||+||+++|++             ++..|+.+.+.++|+++|+++|.||.||||+||+|+|+|.||++||++||+|+
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~   81 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK   81 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEE
Confidence            46899999999976             34568999999999999999999999999999999999999999999999999


Q ss_pred             eec-----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhh
Q 022719           79 LLT-----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  144 (293)
Q Consensus        79 F~T-----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~k  144 (293)
                      |+|           |.||++++.   +.|+|+++|.+||.+|+.||.+ +|+++++  |+.++.+|+++|.++||+|+++
T Consensus        82 F~t~i~HPni~~~~G~icl~~l~---~~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~~~d~~~y~~~v~~~t~~  158 (161)
T d2f4za1          82 FVTKIWHPNISSQTGAICLDILK---HEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTET  158 (161)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGT---TTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ecCCCCCCceECCCCCeecCccc---ccCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            999           999999997   7899999999999999999954 5566555  4677789999999999999999


Q ss_pred             hCC
Q 022719          145 FGT  147 (293)
Q Consensus       145 ya~  147 (293)
                      |+.
T Consensus       159 ~a~  161 (161)
T d2f4za1         159 FAK  161 (161)
T ss_dssp             HCC
T ss_pred             HhC
Confidence            974

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=242.86  Aligned_cols=133  Identities=17%  Similarity=0.434  Sum_probs=121.7

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec------
Q 022719            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT------   81 (293)
Q Consensus         8 ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T------   81 (293)
                      ||+.|.+||+||+++|+++++.||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|      
T Consensus         1 m~~~a~~~L~kE~~~l~~~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   80 (148)
T d1yrva1           1 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN   80 (148)
T ss_dssp             GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccCc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             -----ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHH
Q 022719           82 -----TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREA  141 (293)
Q Consensus        82 -----G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~  141 (293)
                           |.||+++|+. ++.|+|+++|++||.+|++||.+ +++++++  |+.++.+|+++|.++||++
T Consensus        81 V~~~~G~iC~~~l~~-~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1          81 VDPHTGQPCIDFLDN-PEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF  147 (148)
T ss_dssp             BCTTTCCBCCHHHHC-GGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHHHHHH
T ss_pred             eecCcccccccccCc-hhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHhh
Confidence                 8999999962 36899999999999999999954 4444444  4677789999999999875

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=9e-34  Score=238.38  Aligned_cols=134  Identities=27%  Similarity=0.510  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecC-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---------
Q 022719           12 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------   81 (293)
Q Consensus        12 a~kRL~kElk~L~~~p~~gi~~~p~-~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------   81 (293)
                      |.+||++|+++|++++++|+++.+. ++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|+|         
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~   79 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE   79 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceECC
Confidence            4689999999999999999998887 46899999866 899999999999999999999999999999999         


Q ss_pred             -ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719           82 -TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  148 (293)
Q Consensus        82 -G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~  148 (293)
                       |.||+++|.  +++|+|+++|.+||.+|+++|.+ +++++++  ++.++.+|+++|.++||+|+++|+..
T Consensus        80 ~G~icl~~l~--~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~a~~~~~kya~~  148 (150)
T d1wzva1          80 NGQICLPIIS--SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD  148 (150)
T ss_dssp             TCBCCCGGGC--TTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred             CCCccccccc--ccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence             999999996  37899999999999999999954 4555543  46777899999999999999999853

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=3e-33  Score=237.24  Aligned_cols=136  Identities=37%  Similarity=0.756  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--------c
Q 022719           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--------T   82 (293)
Q Consensus        11 ~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--------G   82 (293)
                      +|.|||++|+++|++++++|+++.|.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|+|        |
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~g   80 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT   80 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTTS
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCCC
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999        8


Q ss_pred             cceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCCh-----HHHHHHHHHhHHHHHHHHHHHHhhhC
Q 022719           83 KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA-----LGSLDYKKEERRALAIKSREAAPKFG  146 (293)
Q Consensus        83 ~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~-----l~A~~~~~~dre~f~~kare~~~kya  146 (293)
                      .+|+.++..++++|+|+++|++||++|++||.+ ||+..     ..+...+..+...|..++++++++|.
T Consensus        81 ~~~~~~l~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~~~~~~~~~~f~~k~~~~~~~~~  150 (157)
T d2f4wa1          81 RLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFP  150 (157)
T ss_dssp             CBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCHHHHHHCH
T ss_pred             CeeeeeccccCCCCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888876678999999999999999999954 55431     22333455677888888888888774

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=3.3e-33  Score=237.57  Aligned_cols=135  Identities=24%  Similarity=0.557  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecC-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------
Q 022719           13 VKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------   81 (293)
Q Consensus        13 ~kRL~kElk~L~~~p~~gi~~~p~-~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------   81 (293)
                      ..||++|+++|++++++||++.+. ++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|          
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~   81 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKE   81 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCTT
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCCC
Confidence            379999999999999999999986 468999999999999999999999999999999999999999999          


Q ss_pred             ccceeccCCCC----------CCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719           82 TKICLSISNHH----------PEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  147 (293)
Q Consensus        82 G~ICLsiL~~~----------pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~  147 (293)
                      |.||+++|..+          .+.|+|+++|++||.+|++||.+ +++++++  |+.++.+++++|.++|++|++++..
T Consensus        82 G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~v~k~~e  160 (161)
T d1pzva_          82 GNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQE  160 (161)
T ss_dssp             SBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             CccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            99999999742          13599999999999999999954 5555544  5677789999999999999998753

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=9.6e-34  Score=236.87  Aligned_cols=129  Identities=27%  Similarity=0.618  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecC-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------c
Q 022719           14 KRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------T   82 (293)
Q Consensus        14 kRL~kElk~L~~~p~~gi~~~p~-~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------G   82 (293)
                      |||++|+++|+++++.|+.+.+. ++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|+|          |
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G   80 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKG   80 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCccCC
Confidence            89999999999999999987665 67999999999 999999999999999999999999999999999          9


Q ss_pred             cceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhh
Q 022719           83 KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKF  145 (293)
Q Consensus        83 ~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~ky  145 (293)
                      .||+++|+.  ++|+|.+++.+||.+|++||.+ +++++++  ++.++.+|+++|.++||+|++||
T Consensus        81 ~icl~~l~~--~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~ky  144 (144)
T d1c4zd_          81 QVCLPVISA--ENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY  144 (144)
T ss_dssp             BBCCTTTSS--SSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC
T ss_pred             ccccccccC--CCCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999983  6899999999999999999954 4455443  45677799999999999999987

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=99.97  E-value=4e-31  Score=224.29  Aligned_cols=132  Identities=19%  Similarity=0.409  Sum_probs=115.5

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-------
Q 022719            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-------   81 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-------   81 (293)
                      |+.|.+||++|+++|++.+..++. .+.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|       
T Consensus         1 ~~~a~~Rl~kEl~~l~~~~~~~i~-~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnv   78 (157)
T d1y8xa1           1 ASAAQLRIQKDINELNLPKTCDIS-FSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI   78 (157)
T ss_dssp             CCHHHHHHHHHHHTCCCCTTEEEE-CSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             CCHHHHHHHHHHHHhCCCCCCcEE-EcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCccc
Confidence            578999999999999865533332 45678999999999 899999999999999999999999999999999       


Q ss_pred             ---ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhh
Q 022719           82 ---TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKF  145 (293)
Q Consensus        82 ---G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~ky  145 (293)
                         |.||++++.   ++|+|+++|++||.+|++||.+ +++++++  |+.++.+|+++|.++||+|++..
T Consensus        79 ~~~G~ic~~~~~---~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~~~~~~~f~~~v~~~~~~~  145 (157)
T d1y8xa1          79 DLEGNVCLNILR---EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG  145 (157)
T ss_dssp             CTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSE
T ss_pred             cccceeeeeecc---cCCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHHHHCHHHHHHHHHHHHcCC
Confidence               999999987   8899999999999999999955 5566554  56777899999999999998754

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.9e-31  Score=212.74  Aligned_cols=98  Identities=28%  Similarity=0.608  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEec--CCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---------
Q 022719           13 VKRILQEVKEMQSNPSDDFMSLP--LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------   81 (293)
Q Consensus        13 ~kRL~kElk~L~~~p~~gi~~~p--~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------   81 (293)
                      .|||++|+++|++++++|+.+.+  .++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|+|         
T Consensus         5 ~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpnv   84 (117)
T d2a7la1           5 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV   84 (117)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred             HHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccccC
Confidence            59999999999999999998865  4679999999999999999999999999999999999999999988         


Q ss_pred             ---ccceeccCCCCCCCCCCcccHHHHHHHHHHcC
Q 022719           82 ---TKICLSISNHHPEHWQPSWSVRTALVALIAFM  113 (293)
Q Consensus        82 ---G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL  113 (293)
                         |+||+++|+   +.|+|++||++||++|++||
T Consensus        85 ~~~G~iCl~~l~---~~Wsp~~ti~~vl~~i~~lL  116 (117)
T d2a7la1          85 YSNGHICLSILT---EDWSPALSVQSVCLSIISML  116 (117)
T ss_dssp             CTTCBBCCGGGT---TTCCTTSCHHHHHHHHHHHT
T ss_pred             cCCCeEEeecCc---CCCCCcCcHHHHHHHHHHHh
Confidence               999999997   88999999999999999998

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=99.97  E-value=1.7e-30  Score=207.95  Aligned_cols=96  Identities=28%  Similarity=0.556  Sum_probs=94.2

Q ss_pred             HHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-----------cc
Q 022719           15 RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-----------TK   83 (293)
Q Consensus        15 RL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-----------G~   83 (293)
                      ||+||+++|++++++|+.+.+.++|+++|++.|.||++|||+||+|+++|.||++||++||+|+|+|           |+
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~~G~   81 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD   81 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSB
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECCCCe
Confidence            8999999999999999999999999999999999999999999999999999999999999999998           99


Q ss_pred             ceeccCCCCCCCCCCcccHHHHHHHHHHcC
Q 022719           84 ICLSISNHHPEHWQPSWSVRTALVALIAFM  113 (293)
Q Consensus        84 ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL  113 (293)
                      ||+++|+   ++|+|++||++||++|++||
T Consensus        82 iCl~il~---~~Wsp~~ti~~vl~~i~~ll  108 (109)
T d2fo3a1          82 ICLSLLG---DDYNPSLSISGLVLSIISML  108 (109)
T ss_dssp             BCCGGGT---TTCCTTCCHHHHHHHHHHHH
T ss_pred             EEeeccc---CCCCccCCHHHHHHHHHHHh
Confidence            9999998   88999999999999999987

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.96  E-value=3.2e-30  Score=219.06  Aligned_cols=131  Identities=24%  Similarity=0.502  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-----------
Q 022719           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-----------   81 (293)
Q Consensus        13 ~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-----------   81 (293)
                      .|||++|+++|.+++.   .+.|+ +|+++|++.|.||++|||+||+|+|+|.||++||++||+|+|.|           
T Consensus         2 ~rr~~~e~~~l~~~~~---~~~~~-d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~~   77 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTR---KVYPS-DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERS   77 (158)
T ss_dssp             CHHHHHHHHHHHSSSS---CEEEC-SSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTT
T ss_pred             chHHHHHHHHHhcCCC---cCCCC-CCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccCc
Confidence            4999999999998774   35664 79999999999999999999999999999999999999999999           


Q ss_pred             ccceeccCCCCCCCCCCcccHHHHHHH-HHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCChhH
Q 022719           82 TKICLSISNHHPEHWQPSWSVRTALVA-LIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPER  150 (293)
Q Consensus        82 G~ICLsiL~~~pe~W~P~~sI~~VL~~-I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~~~  150 (293)
                      |.||+++|.   +.|+|.+++.++|.. |+.||.+ +++++++  |+.++.+|+++|.++||+|+++|+....
T Consensus        78 G~vcl~il~---~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~~~n~~~f~~~~k~~~~k~a~~~~  147 (158)
T d1yf9a1          78 GSVCLDVIN---QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATPQK  147 (158)
T ss_dssp             CBBCHHHHH---HHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCHHH
T ss_pred             ccccccccc---cccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHHCChhh
Confidence            999999997   789999999999976 4556633 4445444  4677889999999999999999997754

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=99.96  E-value=1.8e-29  Score=206.28  Aligned_cols=100  Identities=28%  Similarity=0.741  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHhhCCCCCeEEec-CCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------c
Q 022719           14 KRILQEVKEMQSNPSDDFMSLP-LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------T   82 (293)
Q Consensus        14 kRL~kElk~L~~~p~~gi~~~p-~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------G   82 (293)
                      -||+||+++|++++++|+.+.+ +++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|+|          |
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G   81 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNG   81 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTC
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCCCC
Confidence            5899999999999999999987 4678999999999999999999999999999999999999999999          9


Q ss_pred             cceeccCCC----------CCCCCCCcccHHHHHHHHHHcC
Q 022719           83 KICLSISNH----------HPEHWQPSWSVRTALVALIAFM  113 (293)
Q Consensus        83 ~ICLsiL~~----------~pe~W~P~~sI~~VL~~I~~lL  113 (293)
                      .||+++|+.          +.++|+|++|+++||++|++||
T Consensus        82 ~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll  122 (125)
T d2awfa1          82 DVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML  122 (125)
T ss_dssp             BBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHH
T ss_pred             EEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHh
Confidence            999999963          2367999999999999999999

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.6e-29  Score=212.98  Aligned_cols=129  Identities=11%  Similarity=0.385  Sum_probs=108.7

Q ss_pred             ChHHHHHHHHHHHHHhhCCC--CC-eEEecCCCCceEEEEEEeC-CCCCCCCCCe-----------EEEEeeCCCCCCCC
Q 022719            9 KNPAVKRILQEVKEMQSNPS--DD-FMSLPLEENIFEWQFAIRG-PGDTEFEGGI-----------YHGRIQLPAEYPFK   73 (293)
Q Consensus         9 s~~a~kRL~kElk~L~~~p~--~g-i~~~p~~~di~~W~~~I~G-P~~TpYeGG~-----------F~~~I~fP~dYP~~   73 (293)
                      |..|.+||++|+++|++++.  .| +.+.+.++|+++|++.|.| |++|||+||.           |+++|.||++||++
T Consensus         2 s~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~   81 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD   81 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhh
Confidence            67899999999999998774  34 4567788899999999999 8999999986           99999999999999


Q ss_pred             CCeeeeec-----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChH----HHHHHHHHhHHHHHHH
Q 022719           74 PPSFMLLT-----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGAL----GSLDYKKEERRALAIK  137 (293)
Q Consensus        74 PP~v~F~T-----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l----~A~~~~~~dre~f~~k  137 (293)
                      ||+|+|+|           |.||+++|.  +++|+|++||++||.+|+++|.+ +|....    .++.+ .++++.|.+.
T Consensus        82 PP~v~f~t~i~hpn~~~~~G~iCl~iL~--~~~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y~~-~~~~~~y~~~  158 (162)
T d1zuoa1          82 PPFVRVVLPVLSGGYVLGGGALCMELLT--KQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNL-ARAQQSYNSI  158 (162)
T ss_dssp             CCEEEEEESCEESTTBCGGGBBCCGGGS--TTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCCCH-HHHHHHHHHH
T ss_pred             cceEEEEEEeeccccccCCceeeccccc--CCCCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHHHH-HHhHHHHHHH
Confidence            99999999           999999996  37799999999999999999854 443222    12333 3677889998


Q ss_pred             HHH
Q 022719          138 SRE  140 (293)
Q Consensus       138 are  140 (293)
                      +|.
T Consensus       159 ~~~  161 (162)
T d1zuoa1         159 VQI  161 (162)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            874

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.94  E-value=1.5e-27  Score=198.54  Aligned_cols=104  Identities=29%  Similarity=0.431  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecC----CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-----
Q 022719           11 PAVKRILQEVKEMQSNPSDDFMSLPL----EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-----   81 (293)
Q Consensus        11 ~a~kRL~kElk~L~~~p~~gi~~~p~----~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-----   81 (293)
                      ++.+||+||+++|++++++|+...+.    ++|+++|+++|.||.+|||+||+|+++|.||++||++||+|+|+|     
T Consensus         5 ~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~Hp   84 (139)
T d2a4da1           5 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN   84 (139)
T ss_dssp             HHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred             chhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCcccc
Confidence            67899999999999999998766554    347999999999999999999999999999999999999999999     


Q ss_pred             ------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC
Q 022719           82 ------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT  115 (293)
Q Consensus        82 ------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~  115 (293)
                            |.+|++.+.. .+.|+|++||++||.+|++||.+
T Consensus        85 nV~~~~g~~~~~~l~~-l~~Wsp~~ti~~iL~~i~slL~~  123 (139)
T d2a4da1          85 GVNSSNGVVDPRAISV-LAKWQNSYSIKVVLQELRRLMMS  123 (139)
T ss_dssp             TBCTTTCBBCGGGSHH-HHTCCTTCCHHHHHHHHHHHHTS
T ss_pred             cCcCCCCEEcceecCc-ccCCCccCcHHHHHHHHHHHHCC
Confidence                  6665554421 04699999999999999999954

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.93  E-value=4.9e-27  Score=194.87  Aligned_cols=103  Identities=20%  Similarity=0.376  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHHHhhCCCC-CeEEecCC-C--CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----
Q 022719           10 NPAVKRILQEVKEMQSNPSD-DFMSLPLE-E--NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----   81 (293)
Q Consensus        10 ~~a~kRL~kElk~L~~~p~~-gi~~~p~~-~--di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----   81 (293)
                      .++..||+||+++++++.++ ++.....+ +  |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|    
T Consensus         3 ~p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~H   82 (136)
T d1jatb_           3 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL   82 (136)
T ss_dssp             CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             CchHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccc
Confidence            46789999999999998644 45444433 2  5999999999999999999999999999999999999999999    


Q ss_pred             -------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCC
Q 022719           82 -------TKICLSISNHHPEHWQPSWSVRTALVALIAFMP  114 (293)
Q Consensus        82 -------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~  114 (293)
                             |.||++++..  ++|+|++||++||.+|++||.
T Consensus        83 pnV~~~~G~icl~~l~~--~~Wsp~~ti~~IL~~i~~lL~  120 (136)
T d1jatb_          83 PCVNPTTGEVQTDFHTL--RDWKRAYTMETLLLDLRKEMA  120 (136)
T ss_dssp             TTBCTTTCBBCTTSHHH--HTCCTTCCHHHHHHHHHHHHT
T ss_pred             cccccCCCeEECCCCcc--cCcCccCcHHHHHHHHHHHHc
Confidence                   9999998752  679999999999999999993

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.5e-16  Score=129.36  Aligned_cols=98  Identities=16%  Similarity=0.225  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhhCC---CCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEE--EeeCCCCCCCCCCeeeeec--------
Q 022719           15 RILQEVKEMQSNP---SDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG--RIQLPAEYPFKPPSFMLLT--------   81 (293)
Q Consensus        15 RL~kElk~L~~~p---~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~--~I~fP~dYP~~PP~v~F~T--------   81 (293)
                      ++.+|+.++.+.-   .++..+...+++...|.+.|.|+.+++|+||.|++  .|.||.+||++||.|.|.+        
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~   97 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKT   97 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECC
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccC
Confidence            4556777665543   35666777888899999999999999999999998  6668999999999998864        


Q ss_pred             -------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC
Q 022719           82 -------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT  115 (293)
Q Consensus        82 -------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~  115 (293)
                             |+||+++|+   ++|.+.+++.++|..|+.+|.+
T Consensus        98 h~~V~~~G~V~lp~L~---~W~~~~s~L~~ll~~L~~~f~~  135 (141)
T d1s1qa_          98 GKHVDANGKIYLPYLH---EWKHPQSDLLGLIQVMIVVFGD  135 (141)
T ss_dssp             SSSBCTTCBBCCHHHH---TCCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCeECCCCCCcchhhc---CCCcccccHHHHHHHHHHHhCC
Confidence                   999999997   5567788999999999999954

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=4e-13  Score=112.10  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhhCCC---CCeEEecCCCCceEEEEEEeCCCCCCCCCCe---EEEEeeCCCCCCCCCCeeeeec------
Q 022719           14 KRILQEVKEMQSNPS---DDFMSLPLEENIFEWQFAIRGPGDTEFEGGI---YHGRIQLPAEYPFKPPSFMLLT------   81 (293)
Q Consensus        14 kRL~kElk~L~~~p~---~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~---F~~~I~fP~dYP~~PP~v~F~T------   81 (293)
                      +|+.+|+..+.++-+   +.......++....+.+.|.|.-..+|+|+.   |.+.|.||++||+.||.|.|.+      
T Consensus        22 ~~v~~dv~~~l~~y~~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~~  101 (152)
T d1uzxa_          22 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN  101 (152)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCSC
T ss_pred             chHHHHHHHHHHhCCCCCcccceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCccccc
Confidence            678888888866543   2333444556677888889999999999995   7888999999999999999942      


Q ss_pred             ---------------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCCCCCC
Q 022719           82 ---------------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNG  119 (293)
Q Consensus        82 ---------------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~~P~~  119 (293)
                                     |+||+++|+   ++|.+..+|.++|..|+.+|.+.|.|
T Consensus       102 ~~~~~i~~hp~Vd~~G~V~lp~L~---~W~~~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_         102 TISSSLPIQEYIDSNGWIALPILH---CWDPAAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             C----CGGGGGBCTTSCBCCHHHH---SCCTTTCCHHHHHHHHHTGGGSCCCC
T ss_pred             CCCcccccCCCCCCCCcEehHHhc---CCCCccCcHHHHHHHHHHHhcCCCCC
Confidence                           999999997   67789999999999999999777754

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00025  Score=57.08  Aligned_cols=88  Identities=18%  Similarity=0.271  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHhh-------CCCCCeEEecCCCCceEEEEEEeCCCCCCCCC--CeEEEEeeCCCCCCCCCCeeeeec-
Q 022719           12 AVKRILQEVKEMQS-------NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEG--GIYHGRIQLPAEYPFKPPSFMLLT-   81 (293)
Q Consensus        12 a~kRL~kElk~L~~-------~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeG--G~F~~~I~fP~dYP~~PP~v~F~T-   81 (293)
                      =..||..||..|-+       +-...|.+..+ .+=+.|.+..-=    .+.-  -.|.+++.+|..||..||.|..-. 
T Consensus        26 W~~RLKEEy~aLI~Yv~nNK~~dndWF~lesn-~~GT~W~GkCWy----ihnl~kYeFd~eFdIP~tYP~t~pEi~lPeL  100 (162)
T d2in1a1          26 WVQRLKEEYQSLIRYVENNKNADNDWFRLESN-KEGTRWFGKCWY----IHDLLKYEFDIEFDIPITYPTTAPEIAVPEL  100 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEC-TTSSEEEEEEEE----EETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCeEEeccC-CCCCeeeceeeE----EEeeeEEEEEEEeccCCCCCCCCcceecccc
Confidence            57899999998854       12234444432 223455433210    0111  235667778999999999997765 


Q ss_pred             ----------ccceeccCCCCCCCC---CCcccHHHHH
Q 022719           82 ----------TKICLSISNHHPEHW---QPSWSVRTAL  106 (293)
Q Consensus        82 ----------G~ICLsiL~~~pe~W---~P~~sI~~VL  106 (293)
                                |+|||++-  +..-|   .|.++|...|
T Consensus       101 dGKTaKMYRGGkIClt~H--FkPLWarN~PkfGIaHal  136 (162)
T d2in1a1         101 DGKTAKMYRGGKICLTDH--FKPLWARNVPKFGLAHLM  136 (162)
T ss_dssp             SSSCSSSCGGGBCCCCTT--SHHHHHTTTTSCCHHHHH
T ss_pred             CCchhhhhcCceeecccc--chhhhhhcCCchhHHHHH
Confidence                      99999752  22334   3567777654

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.06  Score=40.30  Aligned_cols=65  Identities=20%  Similarity=0.324  Sum_probs=41.7

Q ss_pred             HHHHHHHHhhCCCCCeEEecCCCCceEEEEE--EeCCC--CCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719           16 ILQEVKEMQSNPSDDFMSLPLEENIFEWQFA--IRGPG--DTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus        16 L~kElk~L~~~p~~gi~~~p~~~di~~W~~~--I~GP~--~TpYeGG~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      |..|+..|+.--+..+......++...+.+.  +....  +..=......+.+.||.+||..+|.+.++
T Consensus         6 ~~~EleaL~SIY~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~   74 (115)
T d2daya1           6 LPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIR   74 (115)
T ss_dssp             HHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEE
T ss_pred             HHHHHHHHHhHCCCceEEeccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEee
Confidence            5678888888666667665554444444444  43111  11112245788899999999999999865

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.46  E-value=2.4  Score=31.89  Aligned_cols=67  Identities=21%  Similarity=0.208  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCCC-----CceEEEEEEeCCC-CCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719           14 KRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPG-DTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (293)
Q Consensus        14 kRL~kElk~L~~~p~~gi~~~p~~~-----di~~W~~~I~GP~-~TpYeGG~F~~~I~fP~dYP~~PP~v~F~   80 (293)
                      .+-..|+..|..--+..+.......     ......+.|.... +.....-.+.+.|.||.+||..+|.+.+.
T Consensus        13 E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~   85 (137)
T d1ukxa_          13 QRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK   85 (137)
T ss_dssp             HHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred             HHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEe
Confidence            4557788888764444554432221     1123444554222 22333456899999999999999998765

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.98  E-value=0.76  Score=34.82  Aligned_cols=47  Identities=11%  Similarity=0.068  Sum_probs=35.2

Q ss_pred             CeEEEEeeCCCCCCCCCCeeeeecccceeccCCCCCCCCCCcccHHHHHHHHHHcCCCCC
Q 022719           58 GIYHGRIQLPAEYPFKPPSFMLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP  117 (293)
Q Consensus        58 G~F~~~I~fP~dYP~~PP~v~F~TG~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~~P  117 (293)
                      -.+.+.+.+|.+||..+|.|.+.             ..|-+......+...|..++.+++
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~-------------~~~l~~~~~~~l~~~l~~~~~e~~  114 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGR-------------SSELDRHQQLLLNKGLTSYIGTFD  114 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEE-------------CSSSCHHHHHHHHHHHHHHHTTSC
T ss_pred             ceEEEEEEeCCCCCCCCCCceee-------------ccccCHHHHHHHHHHHHHHHHHhc
Confidence            35778899999999999998754             235556667777888888775553

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.62  E-value=0.64  Score=35.03  Aligned_cols=45  Identities=18%  Similarity=0.194  Sum_probs=31.7

Q ss_pred             CCeEEEEeeCCCCCCCCCCeeeeecccceeccCCCCCCCCCCcccHHHHHHHHHHcCC
Q 022719           57 GGIYHGRIQLPAEYPFKPPSFMLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMP  114 (293)
Q Consensus        57 GG~F~~~I~fP~dYP~~PP~v~F~TG~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~  114 (293)
                      .....+.+.+|.+||..+|.|.+.             ..|-.......++..+..++.
T Consensus        65 ~~~l~L~~~lP~~YP~~~P~i~l~-------------~~~l~~~~~~~l~~~l~~~~~  109 (140)
T d2daxa1          65 MAMFSLACILPFKYPAVLPEITVR-------------SVLLSRSQQTQLNTDLTAFLQ  109 (140)
T ss_dssp             EEEEEEEEEECSSTTSSCCCCEEE-------------CTTSCHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEecCcCCCcCCceecc-------------CCCCCHHHHHHHHHHHHHHHH
Confidence            456889999999999999999754             234444555666666666553