Citrus Sinensis ID: 022792

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
Protein Sequence
MGAFVLQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEEEcccccEEEEEEccccccccccEEEEEEccccccccEEEEEccccccccccccEEEEEEccEEEcEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEccccEEEcccccEEEEEEccccccccccccEEEEEEEEcccEEEEEccccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHccccccccEEEEEEEEcccccEEEEEEEcccccccccEEEEEEEEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEcccccccccccccccccEEEcccccccccccccEEEEEEEEEEcccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHccccccEEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEEcccccEcccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mgafvlqpgprgsllQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAArkcrrptctdyiislncddvskgsstyigrlrsnflgtkftiydghppnaearVTKCRSTRqvnmkqvspkllagnyHVAHISYELNvlgsrgprrmqcvmdaipassiepggvaptqtefhhsgldsfpsipffrsksiraenfqnDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASlengvagqehENVILQFgkvgkdvftmdyQYPISAFQAFAICLSSfdtkiace
Flexible Loop (DISEMBL)
mgafvlqpgprgsLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDyiislncddvskgSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Low Complexity Region (SEG)
MGAFVLQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Disordered region (IsUnstruct)
***********GSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHP*****RVTKC*****VNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAI************************FPSIPFFR*************KEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKI***
Disordered Region (DISOPRED)
MGAFVLQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHP****************************NYHVAHISYELNVLGSRGPRRMQCVMDAIP**********************************************GLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Disordered Region (DISEMBL)
MGAFVLQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Disordered Region (DISPRO)
MGAFVLQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHP***********STRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPAS******************************************KEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIAC*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAFVLQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	292	2.2.26 [Sep-21-2011]
Q8VY21	406	Tubby-like F-box protein	yes	no	0.979	0.704	0.811	1e-132
Q10LG8	403	Tubby-like F-box protein	no	no	0.979	0.709	0.723	1e-125
Q8H485	406	Tubby-like F-box protein	no	no	0.969	0.697	0.684	1e-117
Q6NPQ1	389	Tubby-like F-box protein	no	no	0.955	0.717	0.612	5e-96
Q9SQU1	380	Tubby-like F-box protein	no	no	0.948	0.728	0.617	4e-95
Q75HX5	445	Tubby-like F-box protein	no	no	0.979	0.642	0.533	4e-92
Q6Z2G9	428	Tubby-like F-box protein	no	no	0.976	0.665	0.561	3e-89
Q2QXB2	445	Tubby-like F-box protein	no	no	0.979	0.642	0.527	2e-88
Q8GVE5	394	Tubby-like F-box protein	no	no	0.941	0.697	0.557	3e-88
Q8LJA9	448	Tubby-like F-box protein	no	no	0.979	0.638	0.519	2e-87

>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1

 Score =  472 bits (1214), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/292 (81%), Positives = 261/292 (89%), Gaps = 6/292 (2%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQS-SNDDGKFLLAARKCRRPTCTDYIISLNC 65
           QPGPRGSL+QCYI RNRS+QTYYLYLGLNQ+ SNDDGKFLLAA++ RRPTCTDYIISLNC
Sbjct: 115 QPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNC 174

Query: 66  DDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNY 125
           DDVS+GS+TYIG+LRSNFLGTKFT+YD  P N   +VT+ RS+R +++KQVSP++ +GNY
Sbjct: 175 DDVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGNY 234

Query: 126 HVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRS 185
            VAHISYELNVLGSRGPRRMQCVMDAIPAS++EPGG APTQTE  HS LDSFPS  FFRS
Sbjct: 235 PVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFSFFRS 294

Query: 186 KSIRAENFQND-----QKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASL 240
           KSIRAE+  +      QKEGLLVL+NKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVA+ 
Sbjct: 295 KSIRAESLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAP 354

Query: 241 ENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           ENG AG EHENVILQFGKVGKDVFTMDYQYPISAFQAF ICLSSFDTKIACE
Sbjct: 355 ENGPAGPEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFDTKIACE 406

Arabidopsis thaliana (taxid: 3702)

>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1

 Score =  446 bits (1148), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 209/289 (72%), Positives = 245/289 (84%), Gaps = 3/289 (1%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCD 66
           QPGPR   L+C+I+RNR++QTYYLY+GL ++  DDGKFLLAARKCR+PTCTDY+ISL+  
Sbjct: 115 QPGPRDGTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISLDMS 174

Query: 67  DVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYH 126
           D+SKGS+TYIG+LRSNFLGTKFT+YD HPP   A V+K RS R V + QVSP++ AGNY 
Sbjct: 175 DMSKGSNTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKSRSARVVGLNQVSPRVPAGNYP 234

Query: 127 VAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSK 186
           V+HISYELNVLG+RGPRRM C+MD+IP S+++ GG APTQTEF  SGLDSFPSI FFRSK
Sbjct: 235 VSHISYELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEFPLSGLDSFPSISFFRSK 294

Query: 187 SIRAENFQND---QKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENG 243
           S R ++  +    QKE  LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVAS ENG
Sbjct: 295 SARIDSATSQLSTQKEEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDENG 354

Query: 244 VAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
              QE + VILQFGK+GKD+FTMDY+YPISAFQ+FAICLSSFDTKIACE
Sbjct: 355 PTNQEQDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 403

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1

 Score =  420 bits (1080), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/292 (68%), Positives = 238/292 (81%), Gaps = 9/292 (3%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCD 66
           QPGPR + ++C+I RNR++QTYYLY+GL  +  DDGKFLLAARKCRR TCT+Y+ISL+ +
Sbjct: 118 QPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALTDDGKFLLAARKCRRTTCTEYLISLDMN 177

Query: 67  DVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYH 126
           D+SK + +Y+G+LRSNFLGTKFTIYD HPP A   ++K +S R +    +SP++ AGNY 
Sbjct: 178 DISKRTDSYVGKLRSNFLGTKFTIYDAHPPYAGDVISKGQSARVIGSNHLSPRIPAGNYP 237

Query: 127 VAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSK 186
           V+HISYELNVLGSRGPRRM C MD+IP S+IE GG APTQTEF  S  +SF SIPFF+SK
Sbjct: 238 VSHISYELNVLGSRGPRRMHCAMDSIPVSAIEQGGTAPTQTEFPLSYHESFTSIPFFKSK 297

Query: 187 SIRAEN------FQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASL 240
           S+RA N       QN  K   LVL+NK+PRWHE LQCWCLNF+GRVTVASVKNFQLVAS 
Sbjct: 298 SVRANNSTASLLTQNGSK---LVLKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVASD 354

Query: 241 ENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           E+    QEH++VILQFGKVGKD+FTMDY+YPISAFQAFAICLSSFDTKIACE
Sbjct: 355 ESNPTNQEHDDVILQFGKVGKDMFTMDYRYPISAFQAFAICLSSFDTKIACE 406

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6NPQ1|TLP11_ARATH Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1

 Score =  351 bits (900), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 180/294 (61%), Positives = 218/294 (74%), Gaps = 15/294 (5%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCD 66
           QPGPR SL+QC+IKRNR +Q+Y+LYLGL  S  DDGKFLLAA K +  TCTDYIISL  D
Sbjct: 103 QPGPRDSLVQCFIKRNRITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIISLRSD 162

Query: 67  DVSKGSSTYIGRLRSNFLGTKFTIYDGH--PPNAEARVTKCRSTRQVNMKQVSPKLLAGN 124
           D+S+ S  Y+G++RSNFLGTKFT++DG+  P    A   K R +R  N  +VS K+  G+
Sbjct: 163 DMSRRSQAYVGKVRSNFLGTKFTVFDGNLLPSTGAA---KLRKSRSYNPAKVSAKVPLGS 219

Query: 125 YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFR 184
           Y VAHI+YELNVLGSRGPR+MQC+MD IP S++EP GVA   +EF   G  S  S    R
Sbjct: 220 YPVAHITYELNVLGSRGPRKMQCLMDTIPTSTMEPQGVASEPSEFPLLGTRSTLS----R 275

Query: 185 SKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGV 244
           S+S    +  +  KE  LVL NK PRWHEQL+CWCLNF+GRVTVASVKNFQLVA+  +  
Sbjct: 276 SQSKPLRSSSSHLKETPLVLSNKTPRWHEQLRCWCLNFHGRVTVASVKNFQLVAAGASCG 335

Query: 245 AG------QEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           +G      ++ E +ILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct: 336 SGTGMSPERQSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 389

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQU1|TLP9_ARATH Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1

 Score =  347 bits (891), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 181/293 (61%), Positives = 221/293 (75%), Gaps = 16/293 (5%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCD 66
           Q GPR SL+QC+IKRNR++Q+Y+LYLGL  S  D+GKFLLAA K +R TCTDYIISL  D
Sbjct: 97  QSGPRDSLVQCFIKRNRNTQSYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRSD 156

Query: 67  DVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYH 126
           D+SK S+ Y+GR+RSNFLGTKFT++DG    A A++ K RS+   N  +VSP++  G+Y 
Sbjct: 157 DISKRSNAYLGRMRSNFLGTKFTVFDGSQTGA-AKMQKSRSS---NFIKVSPRVPQGSYP 212

Query: 127 VAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFR-- 184
           +AHISYELNVLGSRGPRRM+C+MD IP S +E  GV  + +    S   S    P FR  
Sbjct: 213 IAHISYELNVLGSRGPRRMRCIMDTIPMSIVESRGVVASTSISSFSSRSS----PVFRSH 268

Query: 185 SKSIRAENFQ-----NDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS 239
           SK +R+ +       N+  +  LVL NKAPRWHEQL+CWCLNF+GRVTVASVKNFQLVA 
Sbjct: 269 SKPLRSNSASCSDSGNNLGDPPLVLSNKAPRWHEQLRCWCLNFHGRVTVASVKNFQLVA- 327

Query: 240 LENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           + +  AGQ  E +ILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct: 328 VSDCEAGQTSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 380

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Confers sensitivity to ABA during seed germination and early seedling development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1

 Score =  338 bits (866), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 173/324 (53%), Positives = 221/324 (68%), Gaps = 38/324 (11%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSS-NDDGKFLLAARKCRRPTCTDYIISLNC 65
           QPGPR  ++QC+IKR++S  TY+LYL L+ +   D GKFLL+A++ R+ TCT+Y+IS++ 
Sbjct: 122 QPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMDA 181

Query: 66  DDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKC-RSTRQVNMKQVSPKLLAGN 124
           D++S+ SSTYIG+LRSNFLGTKF IYD  P    A +    RS+R+ N K+VSPK+ +G+
Sbjct: 182 DNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRRFNSKKVSPKMPSGS 241

Query: 125 YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTE--FHHSGLDSFPSIPF 182
           Y++A ++YELNVLG+RGPRRM CVM +IPASS+EPGG+ P Q E     +  +SF S   
Sbjct: 242 YNIAQVTYELNVLGTRGPRRMHCVMHSIPASSVEPGGIVPGQPEQIVPRAFEESFRSTTS 301

Query: 183 FRSKSIRAENF-------------------------QNDQKEGLLVLRNKAPRWHEQLQC 217
           F   SI   +                          +   KE  LVLRNKAPRWHEQLQC
Sbjct: 302 FSKSSIMDRSMDFSSSRDFSSARFSDIAGGTINGDEEGQNKERPLVLRNKAPRWHEQLQC 361

Query: 218 WCLNFNGRVTVASVKNFQLVASLENGV---------AGQEHENVILQFGKVGKDVFTMDY 268
           WCLNF GRVT+ASVKNFQL+A+              A  E + +ILQFGKV KD+FTMDY
Sbjct: 362 WCLNFRGRVTIASVKNFQLIAAPAQPPAGAPTPSQPAPPEQDKIILQFGKVAKDMFTMDY 421

Query: 269 QYPISAFQAFAICLSSFDTKIACE 292
           +YP+SAFQAFAICLSSFDTK+ACE
Sbjct: 422 RYPLSAFQAFAICLSSFDTKLACE 445

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1

 Score =  328 bits (841), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 168/299 (56%), Positives = 209/299 (69%), Gaps = 14/299 (4%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQS-SNDDGKFLLAARKCRRPTCTDYIISLNC 65
           QPGPR   +QC+++R+R++ TY LYLGL+ S   ++ K LLAARK RR T T ++ISL  
Sbjct: 131 QPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRATRTSFVISLVS 190

Query: 66  DDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNY 125
           +D S  SSTY+G+L+ NFLGTKFTI+D  PP     +   R +++ + KQVSP+L  GNY
Sbjct: 191 NDFSLSSSTYVGKLKPNFLGTKFTIFDSQPPCDAVVLPNNRPSKR-HFKQVSPRLPLGNY 249

Query: 126 HVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRS 185
           +VA +SYEL VL +RGPRRMQC M +IPA  I+ GG APT T   HS  +  P++   + 
Sbjct: 250 NVATVSYELTVLRNRGPRRMQCTMHSIPALCIQEGGKAPTPTGIIHSLDEQVPALSTSKG 309

Query: 186 KSIRAENFQNDQKEGL----------LVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQ 235
           K    E         L          LVL+NKAPRWHEQLQCWCLNF GRVTVASVKNFQ
Sbjct: 310 KEPAIEFSSTSLSADLSGPVCTNEVPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQ 369

Query: 236 LVASLEN--GVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           LVAS++   G+   E E VILQFGK+GKD+FTMDY+YP+SAFQAFAICL+SFDTK ACE
Sbjct: 370 LVASVDPSLGIPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTKPACE 428

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1

 Score =  325 bits (833), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/324 (52%), Positives = 218/324 (67%), Gaps = 38/324 (11%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSS-NDDGKFLLAARKCRRPTCTDYIISLNC 65
           QPGPR   +QC+IKR++S+QTY LYL L+ +   + GKFLL+A++  R TCT+Y I ++ 
Sbjct: 122 QPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSA 181

Query: 66  DDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKC-RSTRQVNMKQVSPKLLAGN 124
           D+ S+ S+ YIG+LRSN LGTKF IYD  PP   A V++  +++R+   ++VSPK  +  
Sbjct: 182 DNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNPSST 241

Query: 125 YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTE--FHHSGLDSFPSIPF 182
           Y +A +SYELNVLG+RGPRRM CVM +IPASS+E GG  P Q +     S  +SF SI F
Sbjct: 242 YSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDESFGSISF 301

Query: 183 FRS----KSIR-------------------AENFQNDQKEGLLVLRNKAPRWHEQLQCWC 219
            +S    +SIR                   A    ++ KE  L+LRNKAPRWHEQLQCWC
Sbjct: 302 SKSSIMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCWC 361

Query: 220 LNFNGRVTVASVKNFQLVASLENGVAGQ-----------EHENVILQFGKVGKDVFTMDY 268
           LNF GRVTVASVKNFQLVA+ +                 +H+ VILQFGKV KD+FTMDY
Sbjct: 362 LNFKGRVTVASVKNFQLVAATQPAAGAPTPSQPAPPPPPDHDKVILQFGKVAKDMFTMDY 421

Query: 269 QYPISAFQAFAICLSSFDTKIACE 292
           +YP+SAFQAFAICLSSFDTK+ACE
Sbjct: 422 RYPLSAFQAFAICLSSFDTKLACE 445

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GVE5|TLP2_ARATH Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1

 Score =  325 bits (833), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 164/294 (55%), Positives = 207/294 (70%), Gaps = 19/294 (6%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCD 66
           QPGPR S +QC+IKRNR++ TY LY GL  S  ++ K LLAAR+ RR TCTD+IISL+  
Sbjct: 111 QPGPRDSPIQCFIKRNRATATYILYYGLMPSETENDKLLLAARRIRRATCTDFIISLSAK 170

Query: 67  DVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYH 126
           + S+ SSTY+G+LRS FLGTKFTIYD    ++ A   + +  R+++ KQ +PKL   +  
Sbjct: 171 NFSRSSSTYVGKLRSGFLGTKFTIYDNQTASSTA---QAQPNRRLHPKQAAPKLPTNSST 227

Query: 127 VAHISYELNVLGSRGPRRMQCVMDAIPASSI--EPGGVAPTQTEFHHSGLDSFPSIPFFR 184
           V +I+YELNVL +RGPRRM C MD+IP SS+  EP  V   + E   S        P  +
Sbjct: 228 VGNITYELNVLRTRGPRRMHCAMDSIPLSSVIAEPSVVQGIEEEVSSS--------PSPK 279

Query: 185 SKSIRAENFQNDQKEGL----LVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASL 240
            ++I  +    D    L    LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA +
Sbjct: 280 GETITTDKEIPDNSPSLRDQPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAEI 339

Query: 241 ENGVAG--QEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           +  +    +EHE VILQFGK+GKD+FTMDY+YP+SAFQAFAIC+SSFDTK ACE
Sbjct: 340 DASLDAPPEEHERVILQFGKIGKDIFTMDYRYPLSAFQAFAICISSFDTKPACE 393

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LJA9|TLP3_ORYSJ Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1

 Score =  322 bits (826), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/331 (51%), Positives = 218/331 (65%), Gaps = 45/331 (13%)

Query: 5   VLQPGPRGSLLQCYIKRNRSSQTYYLYLGL-NQSSNDDGKFLLAARKCRRPTCTDYIISL 63
           + QPGPR  ++QCYIKRNRS  TY+LYL L N  + + GKF+LAA++ R+ TCT+Y IS+
Sbjct: 120 IKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISM 179

Query: 64  NCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKC-RSTRQVNMKQVSPKLLA 122
              ++S+ S T IG+LRSNFLGTKF IYD  PP   A V    R++++ N  +VSPK+ +
Sbjct: 180 VSGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKVPS 239

Query: 123 GNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQ---------------- 166
             Y++A +SYELNVLG+RGPRRM+C+M +IPASS+EPGG+ P Q                
Sbjct: 240 VTYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDSFRST 299

Query: 167 ----------TEFHHSGLDSFPSIPFFRSK------SIRAENFQNDQKEGLLVLRNKAPR 210
                     T F  S +D  PS+ F  ++      SI   +   + KE  LVLRNK PR
Sbjct: 300 TSFSQSFRSTTSFSKSIMD--PSMDFSSARFSDISGSIMGGDDNGEIKERPLVLRNKPPR 357

Query: 211 WHEQLQCWCLNFNGRVTVASVKNFQLVASLENGV---------AGQEHENVILQFGKVGK 261
           WHEQLQCWCLNF GRVT+ASVKNFQLVA+                 + E VILQFGKV +
Sbjct: 358 WHEQLQCWCLNFRGRVTIASVKNFQLVAAPSPPPAGAPTPSQPGPADPEKVILQFGKVAR 417

Query: 262 DVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           D+FTMDY+YP+SAFQAFAICLSSFDTK+ACE
Sbjct: 418 DMFTMDYRYPLSAFQAFAICLSSFDTKLACE 448

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
225436797	405	PREDICTED: tubby-like F-box protein 3-li	0.979	0.706	0.837	1e-142
302399093	401	TLP domain class transcription factor [M	0.972	0.708	0.806	1e-138
297828507	407	hypothetical protein ARALYDRAFT_322431 [	0.979	0.702	0.798	1e-137
356555565	385	PREDICTED: tubby-like F-box protein 6-li	0.986	0.748	0.767	1e-132
356549056	389	PREDICTED: tubby-like F-box protein 6-li	0.986	0.740	0.763	1e-132
357447461	393	Tubby-like F-box protein [Medicago trunc	0.986	0.732	0.765	1e-132
388509992	402	unknown [Lotus japonicus]	0.979	0.711	0.782	1e-132
118486104	392	unknown [Populus trichocarpa]	0.986	0.734	0.763	1e-131
30690823	406	Tubby-like F-box protein 3 [Arabidopsis	0.979	0.704	0.811	1e-131
334184979	407	Tubby-like F-box protein 3 [Arabidopsis	0.979	0.702	0.808	1e-130

>gi|225436797|ref|XP_002269323.1| PREDICTED: tubby-like F-box protein 3-like [Vitis vinifera]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/290 (83%), Positives = 264/290 (91%), Gaps = 4/290 (1%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCD 66
           QPGPRGSLLQCYIKRNRS+QTY+LYLGLNQ+S DDGKFLLAARKCRRPTCTDYIISLN D
Sbjct: 116 QPGPRGSLLQCYIKRNRSNQTYHLYLGLNQASTDDGKFLLAARKCRRPTCTDYIISLNAD 175

Query: 67  DVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYH 126
           DVSKGS+TYIG+LRSNFLGTKFT+YD  PPNA AR++K RSTR++  +QVSP++ AGNY 
Sbjct: 176 DVSKGSTTYIGKLRSNFLGTKFTVYDAQPPNAGARISKSRSTRRLGSRQVSPRVPAGNYP 235

Query: 127 VAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSK 186
           VAHISYELNVLGSRGPRRMQCVMDAIPA++IEPGGVAPTQTEF  S +DSFPS PFFRSK
Sbjct: 236 VAHISYELNVLGSRGPRRMQCVMDAIPANAIEPGGVAPTQTEFVLSNVDSFPSFPFFRSK 295

Query: 187 SIRAENFQ----NDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLEN 242
           S R E+      +  K+ +LVL+NKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS EN
Sbjct: 296 SNRTESLHSGPLSGPKDEMLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASAEN 355

Query: 243 GVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           GVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Sbjct: 356 GVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399093|gb|ADL36841.1| TLP domain class transcription factor [Malus x domestica]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 234/290 (80%), Positives = 263/290 (90%), Gaps = 6/290 (2%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCD 66
           QPGPR SLLQCYIKR+RS+QTYYL+LGL+Q+S DDGKFLLAA+KCRRPTCTDYIISLN +
Sbjct: 114 QPGPRNSLLQCYIKRSRSNQTYYLFLGLSQASTDDGKFLLAAKKCRRPTCTDYIISLNAE 173

Query: 67  DVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYH 126
            VSKG+S ++G+LRSNFLGTKFTIYD  P N+ A+VTKCRSTR VN  +VSP++ AGNY 
Sbjct: 174 VVSKGNSAFVGKLRSNFLGTKFTIYDAQPTNSGAKVTKCRSTRLVN--KVSPRVPAGNYP 231

Query: 127 VAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSK 186
           VAHI+YELNV+G+RGPRRMQCVMD+IPA ++EPGGVAPTQTEF HS  DSFPS+PFFRSK
Sbjct: 232 VAHIAYELNVMGARGPRRMQCVMDSIPARAVEPGGVAPTQTEFMHSNTDSFPSVPFFRSK 291

Query: 187 SIRAENF----QNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLEN 242
           S R ENF    ++ + EG+LVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLV+S EN
Sbjct: 292 STRTENFPSPLESGENEGMLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVSSPEN 351

Query: 243 GVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           GVAGQEHENVILQFGKVGKDVFTMDY+YPISAFQAFAICLSSFDTKIACE
Sbjct: 352 GVAGQEHENVILQFGKVGKDVFTMDYRYPISAFQAFAICLSSFDTKIACE 401

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828507|ref|XP_002882136.1| hypothetical protein ARALYDRAFT_322431 [Arabidopsis lyrata subsp. lyrata] gi|297327975|gb|EFH58395.1| hypothetical protein ARALYDRAFT_322431 [Arabidopsis lyrata subsp. lyrata]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/293 (79%), Positives = 261/293 (89%), Gaps = 7/293 (2%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQS--SNDDGKFLLAARKCRRPTCTDYIISLN 64
           QPGPRGSL+QCYI RNRS+QTYYLYLGLNQ+  SNDDGKFLLAA++ RRPTCTDYIISLN
Sbjct: 115 QPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAAASNDDGKFLLAAKRFRRPTCTDYIISLN 174

Query: 65  CDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGN 124
           CDDVS+GS+TYIG+LRSNFLGTKFT++D  P N   +VT+ RS+R +++KQVSP++ +GN
Sbjct: 175 CDDVSRGSNTYIGKLRSNFLGTKFTVFDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGN 234

Query: 125 YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFR 184
           Y VAHISYELNVLGSRGPRRMQCVMDAIPAS++EPGG APTQTE  HS L++FPS  FFR
Sbjct: 235 YPVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELIHSNLENFPSFSFFR 294

Query: 185 SKSIRAENFQND-----QKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS 239
           SKSIRAE+  +      QKEGLLVL+NKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVA+
Sbjct: 295 SKSIRAESLSSGPASAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAA 354

Query: 240 LENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
            ENG AG EHENVILQFGKVGKDVFTMDYQYPISAFQAF ICLSSFDTKIACE
Sbjct: 355 PENGPAGPEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFDTKIACE 407

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555565|ref|XP_003546101.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/292 (76%), Positives = 256/292 (87%), Gaps = 4/292 (1%)

Query: 5   VLQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLN 64
           V QPGPR +LL+C+IKRNRSSQTYYLYL L  +  +DGKFLLAARKCRRPTCTDYIISL+
Sbjct: 94  VKQPGPRENLLRCFIKRNRSSQTYYLYLSLTNTLAEDGKFLLAARKCRRPTCTDYIISLD 153

Query: 65  CDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGN 124
            DD+SKGS++Y+G+LRSNFLGTKFTIYDG PP+A A++ K RSTR VN+KQVSPK+  GN
Sbjct: 154 ADDMSKGSNSYVGKLRSNFLGTKFTIYDGQPPHAGAKIMKSRSTRLVNLKQVSPKVPTGN 213

Query: 125 YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFR 184
           Y VAHISYELNVLGSRGPRRM CVMD+IPA++IEPGGVAP QTEF  + +D FPS PFFR
Sbjct: 214 YPVAHISYELNVLGSRGPRRMHCVMDSIPAAAIEPGGVAPVQTEFSLNNIDMFPSFPFFR 273

Query: 185 SKSIRAENFQN----DQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASL 240
           SKS R EN  +    DQK+G+LVL+NKAPRWHEQLQCWCLNF+GRVT+ASVKNFQLVAS 
Sbjct: 274 SKSNRVENSVSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASA 333

Query: 241 ENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           EN  AG EH+ +ILQFGKVGKD+FTMDY++PISAFQAFAICLSSFDTKIACE
Sbjct: 334 ENRPAGPEHDKIILQFGKVGKDLFTMDYRFPISAFQAFAICLSSFDTKIACE 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549056|ref|XP_003542914.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 223/292 (76%), Positives = 256/292 (87%), Gaps = 4/292 (1%)

Query: 5   VLQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLN 64
           V QPGPR +LL+C+IKRNRS+QTYYL+L L  +  +DGKFLLAARKCRRPTCTDYIISL+
Sbjct: 98  VKQPGPRENLLRCFIKRNRSTQTYYLFLSLTSTLAEDGKFLLAARKCRRPTCTDYIISLD 157

Query: 65  CDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGN 124
            DD+SKGS++Y+G+LRSNFLGTKFTIYD   P+  A++ K RSTR VN+KQVSPK+  GN
Sbjct: 158 ADDMSKGSNSYVGKLRSNFLGTKFTIYDSQLPHTGAKIMKSRSTRLVNLKQVSPKVPTGN 217

Query: 125 YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFR 184
           Y VAHISYELNVLGSRGPRRM CVMD+IPA++IEPGGVAPTQTEF  + +D FPS PFFR
Sbjct: 218 YPVAHISYELNVLGSRGPRRMHCVMDSIPATAIEPGGVAPTQTEFSLNNIDMFPSFPFFR 277

Query: 185 SKSIRAENFQN----DQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASL 240
           SKS RAEN  +    DQK+G+LVL+NKAPRWHEQLQCWCLNF+GRVT+ASVKNFQLVAS 
Sbjct: 278 SKSNRAENSMSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASA 337

Query: 241 ENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           ENG AG EH+ +ILQFGKVGKD+FTMDY+YPISAFQAFAICLSSFDTKIACE
Sbjct: 338 ENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447461|ref|XP_003594006.1| Tubby-like F-box protein [Medicago truncatula] gi|355483054|gb|AES64257.1| Tubby-like F-box protein [Medicago truncatula]

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/294 (76%), Positives = 255/294 (86%), Gaps = 6/294 (2%)

Query: 5   VLQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLN 64
           V QPGPR +LLQC+IKRNRS+QTYYL+L L  S  DDGKFLLAARKCRRPTCTDYIISL+
Sbjct: 100 VKQPGPRENLLQCFIKRNRSTQTYYLFLSLTSSLGDDGKFLLAARKCRRPTCTDYIISLD 159

Query: 65  CDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGN 124
            DD+S+GS+ Y+G+LRSNFLGTKFTIYDG PP+A A+ TK RSTR VN+KQVSPK+  GN
Sbjct: 160 ADDMSRGSNNYVGKLRSNFLGTKFTIYDGQPPHAGAKFTKSRSTRLVNLKQVSPKVPTGN 219

Query: 125 YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFR 184
           Y VAHISYELNVLGSRGPRRM CVMD+IP+SSIEPGGVAPTQTEF  + ++ FP  PFFR
Sbjct: 220 YPVAHISYELNVLGSRGPRRMHCVMDSIPSSSIEPGGVAPTQTEFSLNNIEMFPLFPFFR 279

Query: 185 SKSIR-AEN-----FQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVA 238
           SKS R  EN        D+K+G+LVL+NKAPRWHEQLQCWCLNF+GRVT+ASVKNFQLVA
Sbjct: 280 SKSNRVVENSLSGPLVGDKKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVA 339

Query: 239 SLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           S ENG AG EH+ +ILQFGKVGKD+FTMD++YPISAFQAFAICLSSFDTKIACE
Sbjct: 340 SAENGTAGPEHDKIILQFGKVGKDLFTMDFRYPISAFQAFAICLSSFDTKIACE 393

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509992|gb|AFK43062.1| unknown [Lotus japonicus]

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/290 (78%), Positives = 253/290 (87%), Gaps = 4/290 (1%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCD 66
           QPGPR SLLQC IKRNRS+QTYYL+LGLNQ+S DDGKFLLAARKCR  T TDYIISLN D
Sbjct: 113 QPGPRDSLLQCCIKRNRSNQTYYLFLGLNQASTDDGKFLLAARKCRHATHTDYIISLNHD 172

Query: 67  DVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYH 126
           DVS+GSSTYIG+LRSNFLGTKFT+YD HPP   A+VTK RSTR V++KQVSP++ AGN  
Sbjct: 173 DVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGAKVTKSRSTRLVSLKQVSPRVPAGNLP 232

Query: 127 VAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSK 186
           + H+SY+LNVLGSRGPR MQCVMDAIPAS++EPGG APTQT+F HS +D+ PSIPFFRSK
Sbjct: 233 IVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGSAPTQTQFLHSRIDASPSIPFFRSK 292

Query: 187 SIRAENFQND----QKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLEN 242
           S R EN  +     Q EG+LVL+NK+PRWHEQLQCWCLNFNGRVTVASVKNFQLVAS  N
Sbjct: 293 STRMENLPSVPSTCQNEGMLVLKNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPRN 352

Query: 243 GVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           GV+ Q  ENV+LQFGKVGKDVFTMDYQYPISAF+AFAICLSSFDTKIACE
Sbjct: 353 GVSEQAQENVVLQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 402

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486104|gb|ABK94895.1| unknown [Populus trichocarpa]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/292 (76%), Positives = 255/292 (87%), Gaps = 4/292 (1%)

Query: 5   VLQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLN 64
           V QPGPR  LLQC+IKR RS+QTY LYLGLN +  +DGKFLLAARKCRRPTCTDYIISL+
Sbjct: 101 VKQPGPRDFLLQCFIKRCRSAQTYRLYLGLNNALTEDGKFLLAARKCRRPTCTDYIISLD 160

Query: 65  CDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGN 124
            DD+SKGS+ Y+G+LRSNFLGTKFT++DG PP+A A++TK RS+R VN+KQVSP++  GN
Sbjct: 161 TDDMSKGSNAYVGKLRSNFLGTKFTVFDGQPPHAGAKMTKSRSSRLVNLKQVSPRVPTGN 220

Query: 125 YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFR 184
           Y VA ISYELNVLGSRGPRRM C+MDAIPAS+IEPGG+APTQTEF H  +D  PS+PFFR
Sbjct: 221 YPVASISYELNVLGSRGPRRMHCIMDAIPASAIEPGGIAPTQTEFSHHNVDFLPSLPFFR 280

Query: 185 SKSIRAENFQ----NDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASL 240
           SKS R E+FQ    + Q+E  LVL+NKAPRWHEQLQCWCLNF+GRVTVASVKNFQLV S 
Sbjct: 281 SKSSRVESFQSGSLSSQRERALVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVVSP 340

Query: 241 ENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           ENG AG EHEN+ILQFGKVGKD+FTMDY+YPISAFQAFA+CLSSFDTKIACE
Sbjct: 341 ENGPAGPEHENIILQFGKVGKDLFTMDYRYPISAFQAFALCLSSFDTKIACE 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690823|ref|NP_850481.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] gi|79324947|ref|NP_001031558.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] gi|75248467|sp|Q8VY21.1|TLP3_ARATH RecName: Full=Tubby-like F-box protein 3; Short=AtTLP3 gi|18377640|gb|AAL66970.1| putative tubby protein [Arabidopsis thaliana] gi|20465543|gb|AAM20254.1| putative tubby protein [Arabidopsis thaliana] gi|27372514|gb|AAK98802.1| tubby-like protein 3 [Arabidopsis thaliana] gi|330255813|gb|AEC10907.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] gi|330255814|gb|AEC10908.1| Tubby-like F-box protein 3 [Arabidopsis thaliana]

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/292 (81%), Positives = 261/292 (89%), Gaps = 6/292 (2%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQS-SNDDGKFLLAARKCRRPTCTDYIISLNC 65
           QPGPRGSL+QCYI RNRS+QTYYLYLGLNQ+ SNDDGKFLLAA++ RRPTCTDYIISLNC
Sbjct: 115 QPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNC 174

Query: 66  DDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNY 125
           DDVS+GS+TYIG+LRSNFLGTKFT+YD  P N   +VT+ RS+R +++KQVSP++ +GNY
Sbjct: 175 DDVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGNY 234

Query: 126 HVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRS 185
            VAHISYELNVLGSRGPRRMQCVMDAIPAS++EPGG APTQTE  HS LDSFPS  FFRS
Sbjct: 235 PVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFSFFRS 294

Query: 186 KSIRAENFQND-----QKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASL 240
           KSIRAE+  +      QKEGLLVL+NKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVA+ 
Sbjct: 295 KSIRAESLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAP 354

Query: 241 ENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           ENG AG EHENVILQFGKVGKDVFTMDYQYPISAFQAF ICLSSFDTKIACE
Sbjct: 355 ENGPAGPEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFDTKIACE 406

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184979|ref|NP_001189775.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] gi|3738302|gb|AAC63644.1| putative tubby protein [Arabidopsis thaliana] gi|20197552|gb|AAM15124.1| putative tubby protein [Arabidopsis thaliana] gi|227204449|dbj|BAH57076.1| AT2G47900 [Arabidopsis thaliana] gi|330255815|gb|AEC10909.1| Tubby-like F-box protein 3 [Arabidopsis thaliana]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/293 (80%), Positives = 261/293 (89%), Gaps = 7/293 (2%)

Query: 7   QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQS--SNDDGKFLLAARKCRRPTCTDYIISLN 64
           QPGPRGSL+QCYI RNRS+QTYYLYLGLNQ+  SNDDGKFLLAA++ RRPTCTDYIISLN
Sbjct: 115 QPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAAASNDDGKFLLAAKRFRRPTCTDYIISLN 174

Query: 65  CDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGN 124
           CDDVS+GS+TYIG+LRSNFLGTKFT+YD  P N   +VT+ RS+R +++KQVSP++ +GN
Sbjct: 175 CDDVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGN 234

Query: 125 YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFR 184
           Y VAHISYELNVLGSRGPRRMQCVMDAIPAS++EPGG APTQTE  HS LDSFPS  FFR
Sbjct: 235 YPVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFSFFR 294

Query: 185 SKSIRAENFQND-----QKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS 239
           SKSIRAE+  +      QKEGLLVL+NKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVA+
Sbjct: 295 SKSIRAESLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAA 354

Query: 240 LENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
            ENG AG EHENVILQFGKVGKDVFTMDYQYPISAFQAF ICLSSFDTKIACE
Sbjct: 355 PENGPAGPEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFDTKIACE 407

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
TAIR|locus:2081101	380	TLP9 "AT3G06380" [Arabidopsis	0.948	0.728	0.621	1.2e-88
TAIR|locus:2180034	389	TLP11 "AT5G18680" [Arabidopsis	0.958	0.719	0.614	3.2e-88
TAIR|locus:2032950	445	TLP10 "AT1G25280" [Arabidopsis	0.613	0.402	0.494	1.7e-82
TAIR|locus:2025327	455	TLP1 "AT1G76900" [Arabidopsis	0.647	0.415	0.502	3.1e-81
TAIR|locus:2062121	394	TLP2 "AT2G18280" [Arabidopsis	0.941	0.697	0.564	3.7e-80
TAIR|locus:2194686	429	TLP5 "AT1G43640" [Arabidopsis	0.797	0.543	0.506	4.6e-80
TAIR|locus:2036730	413	TLP6 "AT1G47270" [Arabidopsis	0.938	0.663	0.534	5.7e-75
TAIR|locus:2009610	379	TLP7 "AT1G53320" [Arabidopsis	0.924	0.712	0.526	9.6e-73
UNIPROTKB|E1B8A6	508	TUB "Uncharacterized protein"	0.318	0.183	0.52	2.2e-45
RGD|3918	505	Tub "tubby homolog (mouse)" [R	0.318	0.184	0.52	4.4e-45

TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 182/293 (62%), Positives = 221/293 (75%)

Query:     7 QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCD 66
             Q GPR SL+QC+IKRNR++Q+Y+LYLGL  S  D+GKFLLAA K +R TCTDYIISL  D
Sbjct:    97 QSGPRDSLVQCFIKRNRNTQSYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRSD 156

Query:    67 DVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYH 126
             D+SK S+ Y+GR+RSNFLGTKFT++DG    A A++ K RS+   N  +VSP++  G+Y 
Sbjct:   157 DISKRSNAYLGRMRSNFLGTKFTVFDGSQTGA-AKMQKSRSS---NFIKVSPRVPQGSYP 212

Query:   127 VAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRS- 185
             +AHISYELNVLGSRGPRRM+C+MD IP S +E  GV  + +    S   S    P FRS 
Sbjct:   213 IAHISYELNVLGSRGPRRMRCIMDTIPMSIVESRGVVASTSISSFSSRSS----PVFRSH 268

Query:   186 -KSIRAENFQ-NDQKEGL----LVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS 239
              K +R+ +   +D    L    LVL NKAPRWHEQL+CWCLNF+GRVTVASVKNFQLVA 
Sbjct:   269 SKPLRSNSASCSDSGNNLGDPPLVLSNKAPRWHEQLRCWCLNFHGRVTVASVKNFQLVA- 327

Query:   240 LENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
             + +  AGQ  E +ILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct:   328 VSDCEAGQTSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 380

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)]

 Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
 Identities = 180/293 (61%), Positives = 221/293 (75%)

Query:     7 QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCD 66
             QPGPR SL+QC+IKRNR +Q+Y+LYLGL  S  DDGKFLLAA K +  TCTDYIISL  D
Sbjct:   103 QPGPRDSLVQCFIKRNRITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIISLRSD 162

Query:    67 DVSKGSSTYIGRLRSNFLGTKFTIYDGHP-PNAEARVTKCRSTRQVNMKQVSPKLLAGNY 125
             D+S+ S  Y+G++RSNFLGTKFT++DG+  P+  A   K R +R  N  +VS K+  G+Y
Sbjct:   163 DMSRRSQAYVGKVRSNFLGTKFTVFDGNLLPSTGA--AKLRKSRSYNPAKVSAKVPLGSY 220

Query:   126 HVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRS 185
              VAHI+YELNVLGSRGPR+MQC+MD IP S++EP GVA   +EF   G  S  ++   +S
Sbjct:   221 PVAHITYELNVLGSRGPRKMQCLMDTIPTSTMEPQGVASEPSEFPLLGTRS--TLSRSQS 278

Query:   186 KSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVA---SLEN 242
             K +R+ +  +  KE  LVL NK PRWHEQL+CWCLNF+GRVTVASVKNFQLVA   S  +
Sbjct:   279 KPLRSSS--SHLKETPLVLSNKTPRWHEQLRCWCLNFHGRVTVASVKNFQLVAAGASCGS 336

Query:   243 GVA---GQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
             G      ++ E +ILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct:   337 GTGMSPERQSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
 Identities = 93/188 (49%), Positives = 140/188 (74%)

Query:     7 QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSN-DDGKFLLAARKCRRPTCTDYIISLNC 65
             QPGPR +++QC+IKR++S  T++L+L L+ +   ++GKFLL+A++ RR T T+YIIS++ 
Sbjct:   122 QPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEYIISMDA 181

Query:    66 DDVSKGSSTYIGRLRSNFLGTKFTIYDGHPP---NAEARVTKCRSTRQVNMKQVSPKLLA 122
             D++S+ S++Y+G+LRSNFLGTKF +YD  PP   ++ A +T   S  + + ++VSPK+ +
Sbjct:   182 DNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPNTSSSALITDRTSRSRFHSRRVSPKVPS 241

Query:   123 GNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTE----FHHSGLDSFP 178
             G+Y++A I+YELNVLG+RGPRRM C+M++IP SS+EPGG  P Q E      +S  DSF 
Sbjct:   242 GSYNIAQITYELNVLGTRGPRRMHCIMNSIPISSLEPGGSVPNQPEKLVPAPYSLDDSFR 301

Query:   179 S-IPFFRS 185
             S I F +S
Sbjct:   302 SNISFSKS 309

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 3.1e-81, Sum P(3) = 3.1e-81
 Identities = 99/197 (50%), Positives = 139/197 (70%)

Query:     7 QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSN-DDGKFLLAARKCRRPTCTDYIISLNC 65
             QPGPR + +QC+IKR++S+ TY+LYL L+ +   ++GKFLL+A++ RR T T+Y+IS++ 
Sbjct:   120 QPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMHA 179

Query:    66 DDVSKGSSTYIGRLRSNFLGTKFTIYDGHPP-NAE-AR-VTKCRSTRQVNMKQVSPKLLA 122
             D +S+ S+TYIG++RSNFLGTKF IYD  P  N+  AR V     +R+   K+VSPK+ +
Sbjct:   180 DTISRSSNTYIGKIRSNFLGTKFIIYDTQPAYNSNIARAVQPVGLSRRFYSKRVSPKVPS 239

Query:   123 GNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF--HHSGLD-SFPS 179
             G+Y +A +SYELNVLG+RGPRRM C M++IPASS+  GG  P Q +     S LD SF S
Sbjct:   240 GSYKIAQVSYELNVLGTRGPRRMHCAMNSIPASSLAEGGTVPGQPDIIVPRSILDESFRS 299

Query:   180 IPFFRSKSIRAENFQND 196
             I    S+ I  + + ND
Sbjct:   300 ITSSSSRKITYD-YSND 315

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 166/294 (56%), Positives = 210/294 (71%)

Query:     7 QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCD 66
             QPGPR S +QC+IKRNR++ TY LY GL  S  ++ K LLAAR+ RR TCTD+IISL+  
Sbjct:   111 QPGPRDSPIQCFIKRNRATATYILYYGLMPSETENDKLLLAARRIRRATCTDFIISLSAK 170

Query:    67 DVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYH 126
             + S+ SSTY+G+LRS FLGTKFTIYD    ++ A+    +  R+++ KQ +PKL   +  
Sbjct:   171 NFSRSSSTYVGKLRSGFLGTKFTIYDNQTASSTAQA---QPNRRLHPKQAAPKLPTNSST 227

Query:   127 VAHISYELNVLGSRGPRRMQCVMDAIPASSI--EPGGVAPTQTEFHHSGLDSFPSIPFFR 184
             V +I+YELNVL +RGPRRM C MD+IP SS+  EP  V   + E     + S PS P  +
Sbjct:   228 VGNITYELNVLRTRGPRRMHCAMDSIPLSSVIAEPSVVQGIEEE-----VSSSPS-P--K 279

Query:   185 SKSIRAENFQNDQKEGL----LVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASL 240
              ++I  +    D    L    LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA +
Sbjct:   280 GETITTDKEIPDNSPSLRDQPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAEI 339

Query:   241 ENGVAG--QEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
             +  +    +EHE VILQFGK+GKD+FTMDY+YP+SAFQAFAIC+SSFDTK ACE
Sbjct:   340 DASLDAPPEEHERVILQFGKIGKDIFTMDYRYPLSAFQAFAICISSFDTKPACE 393

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 4.6e-80, Sum P(2) = 4.6e-80
 Identities = 121/239 (50%), Positives = 175/239 (73%)

Query:     7 QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSN-DDGKFLLAARKCRRPTCTDYIISLNC 65
             QPGPR  ++QCYIKR++S+ TY+LYL L+ +   + GKFLL+A++ RR T T+Y+IS++ 
Sbjct:   118 QPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVISMDA 177

Query:    66 DDVSKGSSTYIGRLRSNFLGTKFTIYDGHPP-NAEARVTKCRSTRQVNMKQVSPKLLAGN 124
             D++S+ SSTYIG+L+SNFLGTKF +YD  P  N+   ++    +R  N K+VSPK+ +G+
Sbjct:   178 DNISRSSSTYIGKLKSNFLGTKFIVYDTAPAYNSSQILSPPNRSRSFNSKKVSPKVPSGS 237

Query:   125 YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLD-SFPSIPFF 183
             Y++A ++YELN+LG+RGPRRM C+M +IP+ ++EPGG  P+Q EF    LD SF SI   
Sbjct:   238 YNIAQVTYELNLLGTRGPRRMNCIMHSIPSLALEPGGTVPSQPEFLQRSLDESFRSIGSS 297

Query:   184 RSKSIRAENFQNDQKEGL---LVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS 239
             +  +   +  +  ++EG    LVL+ K PRW + L+CWCLNF GRVTVASVKNFQL+++
Sbjct:   298 KIVNHSGDFTRPKEEEGKVRPLVLKTKPPRWLQPLRCWCLNFKGRVTVASVKNFQLMSA 356

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 157/294 (53%), Positives = 207/294 (70%)

Query:     7 QPGPRGSLLQCYIKRNRSSQTYYLYLGLNQS-SNDDGKFLLAARKCRRPTCTDYIISLNC 65
             QPGPR + +QC+IKR R++  Y LYLGL+ + S D  K LL+A++ RR T  ++++SL+ 
Sbjct:   132 QPGPRDAPIQCFIKRERATGIYRLYLGLSPALSGDKSKLLLSAKRVRRATGAEFVVSLSG 191

Query:    66 DDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGN- 124
             +D S+ SS YIG+LRSNFLGTKFT+Y+  PP    ++         +M QVSP + + + 
Sbjct:   192 NDFSRSSSNYIGKLRSNFLGTKFTVYENQPPPFNRKLPP-------SM-QVSPWVSSSSS 243

Query:   125 -YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFF 183
              Y++A I YELNVL +RGPRRMQC+M +IP S+I+ GG   + TEF + G      +  F
Sbjct:   244 SYNIASILYELNVLRTRGPRRMQCIMHSIPISAIQEGGKIQSPTEFTNQGKKKKKPLMDF 303

Query:   184 RSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASL-EN 242
              S ++  E+   +     L+L+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA+  E 
Sbjct:   304 CSGNLGGESVIKEP----LILKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAAEA 359

Query:   243 G----VAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
             G    +  +E + VILQFGK+GKD+FTMDY+YPISAFQAFAICLSSFDTK  CE
Sbjct:   360 GKNMNIPEEEQDRVILQFGKIGKDIFTMDYRYPISAFQAFAICLSSFDTKPVCE 413

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 151/287 (52%), Positives = 199/287 (69%)

Query:     8 PGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDD 67
             PGPR    QC IKRN+ + T+YLYL L  S  D GKFLLAAR+ R    T+YIISL+ DD
Sbjct:   108 PGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDADD 167

Query:    68 VSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHV 127
              S+GS+ Y+G+LRS+FLGT FT+YD  PP+  A+ +  +++R+   KQ+SP++ AGN+ V
Sbjct:   168 FSQGSNAYVGKLRSDFLGTNFTVYDSQPPHNGAKPSNGKASRRFASKQISPQVPAGNFEV 227

Query:   128 AHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKS 187
              H+SY+ N+L SRGPRRM   +   P+ S       P+ +    +GL S    P   +K 
Sbjct:   228 GHVSYKFNLLKSRGPRRMVSTLRC-PSPS-------PSSSS---AGLSSDQK-PCDVTKI 275

Query:   188 IRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGV-AG 246
             ++  N        L +L+NKAPRWHE LQCWCLNF+GRVTVASVKNFQLVA+++    +G
Sbjct:   276 MKKPNKDGSS---LTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPSG 332

Query:   247 Q-EHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
             + + E V+LQFGKVG D FTMDY+ P+SAFQAFAICL+SF TK+ACE
Sbjct:   333 KGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 379

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

UNIPROTKB|E1B8A6 TUB "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 275 (101.9 bits), Expect = 2.2e-45, Sum P(2) = 2.2e-45
 Identities = 52/100 (52%), Positives = 72/100 (72%)

Query:   193 FQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENV 252
             +QN   E ++ L+NK P W++  Q + LNF+GRVT ASVKNFQ++        G + + +
Sbjct:   416 WQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH-------GNDPDYI 468

Query:   253 ILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
             ++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct:   469 VMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 508

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0050766 "positive regulation of phagocytosis" evidence=IEA

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

RGD|3918 Tub "tubby homolog (mouse)" [Rattus norvegicus (taxid:10116)]

 Score = 275 (101.9 bits), Expect = 4.4e-45, Sum P(2) = 4.4e-45
 Identities = 52/100 (52%), Positives = 72/100 (72%)

Query:   193 FQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENV 252
             +QN   E ++ L+NK P W++  Q + LNF+GRVT ASVKNFQ++        G + + +
Sbjct:   413 WQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH-------GNDPDYI 465

Query:   253 ILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
             ++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct:   466 VMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007602 "phototransduction" evidence=IEA;ISO

GO:0007605 "sensory perception of sound" evidence=IEA;ISO

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA;ISO

GO:0009584 "detection of visible light" evidence=ISO

GO:0009725 "response to hormone stimulus" evidence=IEP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IEA;ISO

GO:0050766 "positive regulation of phagocytosis" evidence=ISO;ISS

GO:0060041 "retina development in camera-type eye" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY21	TLP3_ARATH	No assigned EC number	0.8116	0.9794	0.7044	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pm.C_scaffold_4002488 annotation not avaliable (407 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	292
pfam01167	243	pfam01167, Tub, Tub family	1e-117

>gnl|CDD|216339 pfam01167, Tub, Tub family

 Score =  335 bits (861), Expect = e-117
 Identities = 128/282 (45%), Positives = 167/282 (59%), Gaps = 42/282 (14%)

Query: 8   PGPRGSLLQCYIKRNRSSQTYYLYLGLN---QSSNDDGKFLLAARKCRRPTCTDYIISLN 64
           P PRG  +QC I R++S   Y L+       +  N   KFLLAARK +R   ++Y+ISL+
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 65  CDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGN 124
             D+S+    YIG+LRSNFLGTKFT++D      +AR+             V+PK+ +G 
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKARL-------------VTPKVASGR 107

Query: 125 YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFR 184
             +A + YE NVLG RGPR+M  +M  IP+S        P Q       L S        
Sbjct: 108 QELAAVCYETNVLGFRGPRKMTVIMPGIPSSHE----RVPIQPLNDQESLLS-------- 155

Query: 185 SKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGV 244
                   +QN  KE LLVL NKAPRW++QLQ + LNF+GRVT ASVKNFQ+       V
Sbjct: 156 -------RWQNKNKESLLVLHNKAPRWNDQLQSYVLNFHGRVTQASVKNFQI-------V 201

Query: 245 AGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 286
              + + ++LQFG+V KD+FTMDY+YP+SAFQAFAICLSSFD
Sbjct: 202 HASDPDYIVLQFGRVAKDMFTMDYRYPLSAFQAFAICLSSFD 243

Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	292
KOG2502	355	consensus Tub family proteins [General function pr	100.0
PF01167	246	Tub: Tub family; InterPro: IPR000007 Tubby, an aut	100.0
KOG2503	565	consensus Tubby superfamily protein TULP4 [General	99.79
PF12043	346	DUF3527: Domain of unknown function (DUF3527); Int	98.51

>KOG2502 consensus Tub family proteins [General function prediction only]

Probab=100.00  E-value=1.2e-97  Score=699.37  Aligned_cols=252  Identities=60%  Similarity=0.971  Sum_probs=225.5

Q ss_pred             CcccccCCCCCCceEEEEEEEeccCCeEEEEeecccCCC--CCCeEEEEEEecCCCCcceEEEEecCCCCCCCCcceeEE
Q 022792            1 MGAFVLQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSN--DDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGR   78 (292)
Q Consensus         1 m~~fL~~P~P~~~~iqC~I~R~k~~~~Y~Lyl~~~~~~~--~~~kfLLaArKr~~~~tsnYiIS~~~~dlsr~s~~yvGK   78 (292)
                      +++||+||+|+|.++||+|+|||+|.+|+||+.|.+++.  ++++|||||||+|+++|+|||||+|++||||++++||||
T Consensus       102 ~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGk  181 (355)
T KOG2502|consen  102 FPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGK  181 (355)
T ss_pred             hhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeee
Confidence            478999999999999999999999999999999988653  678999999999999999999999999999999999999


Q ss_pred             eeeceeecEEEEecCCCCCCccccccccccccccccccCccccCccEeEEEEEEeccccCCCCCceeEEEeccCCCcccC
Q 022792           79 LRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIE  158 (292)
Q Consensus        79 LRSNflGT~f~iyD~G~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~nvlg~rgPRkM~v~ip~ip~~~~~  158 (292)
                      |||||+||+|||||+|.+.          ++.++      +++++++|||+|+||+||||+||||||+|+||.||.++  
T Consensus       182 lRSN~lGTKFtVyD~g~~~----------~r~~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--  243 (355)
T KOG2502|consen  182 LRSNLLGTKFTVYDNGVNP----------SRRFN------KVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA--  243 (355)
T ss_pred             eecccccceEEEecCCCCc----------ccccc------cCCcccceeeEEEEeeccccccCCceeEEeccCCCCCC--
Confidence            9999999999999998332          12222      57889999999999999999999999999999999877  


Q ss_pred             CCCCCCCccccccCCCCCCCCccccccccccccccccccccceEEeecCCCccccCcccEEeecCCeeeccccceeEEEe
Q 022792          159 PGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVA  238 (292)
Q Consensus       159 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~~SvKNFqLv~  238 (292)
                      ++|..|.|+...+..               .+..+.....+++++|+||.|+||+++|||||||+||||+|||||||||+
T Consensus       244 ~~~~v~~q~~~~~~~---------------~l~r~~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~  308 (355)
T KOG2502|consen  244 PGGRVPVQPENDHPS---------------LLFRSQNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVH  308 (355)
T ss_pred             CCCcccccccccccc---------------hhhhccccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEec
Confidence            788888876654421               11112233468999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCeEEEEEeeeCCCeEEEEccCCCCHHHHHHHHHHcCccccccC
Q 022792          239 SLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE  292 (292)
Q Consensus       239 ~~~~~~~~~~~~~~vlqfGk~~~~~f~lD~~~PlS~~QAFaialss~d~k~aCe  292 (292)
                      ..       ++++|||||||||+|+|||||+||||+||||||||||||+|+|||
T Consensus       309 ~~-------~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  309 AL-------DPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLACE  355 (355)
T ss_pred             cC-------CCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHhccccccCC
Confidence            74       679999999999999999999999999999999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function

Probab=100.00  E-value=1e-84  Score=597.63  Aligned_cols=245  Identities=55%  Similarity=0.920  Sum_probs=182.1

Q ss_pred             CCCCCceEEEEEEEeccCCeEEEEeecccC-CCCCCeEEEEEEecCCCCcceEEEEecCCCCCCCCcceeEEeeeceeec
Q 022792            8 PGPRGSLLQCYIKRNRSSQTYYLYLGLNQS-SNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGT   86 (292)
Q Consensus         8 P~P~~~~iqC~I~R~k~~~~Y~Lyl~~~~~-~~~~~kfLLaArKr~~~~tsnYiIS~~~~dlsr~s~~yvGKLRSNflGT   86 (292)
                      |||++++|||+|+|+|+|.++.||+.+... +.++++|||||||+++++||||+||++++|+||++++|||||||||+||
T Consensus         1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT   80 (246)
T PF01167_consen    1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT   80 (246)
T ss_dssp             B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred             CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence            999999999999999998654444444332 2478899999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCccccccccccccccccccCccccCccEeEEEEEEeccccCCCCCceeEEEeccCCCcccCCCCCCCCc
Q 022792           87 KFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQ  166 (292)
Q Consensus        87 ~f~iyD~G~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~nvlg~rgPRkM~v~ip~ip~~~~~~~g~~p~~  166 (292)
                      +|+|||+|.+++.+.             ..+|+.+..|+|||+|.||+||||++|||||+|+||+|+.+..++++..|.+
T Consensus        81 ~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~  147 (246)
T PF01167_consen   81 EFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQ  147 (246)
T ss_dssp             EEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B----
T ss_pred             EEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeee
Confidence            999999996554332             1245566789999999999999999999999999999987766555544332


Q ss_pred             cccccCCCCCCCCccccccccccccccccccccceEEeecCCCccccCcccEEeecCCeeeccccceeEEEecccCCCCC
Q 022792          167 TEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAG  246 (292)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~~SvKNFqLv~~~~~~~~~  246 (292)
                      +.-              .+.+..+........+++++|+||+|+||+++++|+|||+|||++|||||||||++       
T Consensus       148 p~~--------------~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~-------  206 (246)
T PF01167_consen  148 PLN--------------QEKDSLLSRFQNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHP-------  206 (246)
T ss_dssp             -SS---------------CCCSHHHHHHCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBT-------
T ss_pred             ccc--------------cccccccccccccCCcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEcc-------
Confidence            100              01111222223456689999999999999999999999999999999999999997       


Q ss_pred             CCCCeEEEEEeeeCCCeEEEEccCCCCHHHHHHHHHHcCc
Q 022792          247 QEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD  286 (292)
Q Consensus       247 ~~~~~~vlqfGk~~~~~f~lD~~~PlS~~QAFaialss~d  286 (292)
                      ++.+++||||||+++|+|+|||+|||||+|||||||||||
T Consensus       207 ~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd  246 (246)
T PF01167_consen  207 SDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD  246 (246)
T ss_dssp             TBTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence            4678999999999999999999999999999999999997

This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.

>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]

Probab=99.79  E-value=3.2e-20  Score=181.42  Aligned_cols=79  Identities=42%  Similarity=0.734  Sum_probs=73.0

Q ss_pred             ceEEeecCCCccccCcccEEeecCCeeeccccceeEEEecccCCCCCCCCCeEEEEEeeeCCCeEEEEccCCCCHHHHHH
Q 022792          200 GLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFA  279 (292)
Q Consensus       200 ~~~~l~~k~P~w~~~~~~y~LnF~gRv~~~SvKNFqLv~~~~~~~~~~~~~~~vlqfGk~~~~~f~lD~~~PlS~~QAFa  279 (292)
                      .+.++.||+|-|||.+|-|+|||.||||+.|.||||+-..          .+-|||||+|+-+.|++||+||||+.||||
T Consensus       485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~----------gkQvmqFgRidg~aytldfqypfSa~QaFa  554 (565)
T KOG2503|consen  485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF----------GKQVMQFGRIDGPAYTLDFQYPFSAGQAFA  554 (565)
T ss_pred             eEEEeecCCccccccceEEEeccCCccchhhhccceEeec----------chhhheeccccCCcccCCCCCchHHHHHHH
Confidence            4569999999999999999999999999999999999764          578999999999999999999999999999


Q ss_pred             HHHHcCccc
Q 022792          280 ICLSSFDTK  288 (292)
Q Consensus       280 ialss~d~k  288 (292)
                      +||++.-..
T Consensus       555 valanvtqR  563 (565)
T KOG2503|consen  555 VALANVTQR  563 (565)
T ss_pred             HHHhhhhhh
Confidence            999986543

>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised

Probab=98.51  E-value=1.6e-05  Score=76.66  Aligned_cols=58  Identities=19%  Similarity=0.454  Sum_probs=47.1

Q ss_pred             CeeeccccceeEEEecccCCCCCCCCCeEEEEEeeeCCCeEEEEccCCCCHHHHHHHHHHcCcc
Q 022792          224 GRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDT  287 (292)
Q Consensus       224 gRv~~~SvKNFqLv~~~~~~~~~~~~~~~vlqfGk~~~~~f~lD~~~PlS~~QAFaialss~d~  287 (292)
                      .+...+.-+=|.|....      ..++..+|-+--+.++.|.+||+-.||+||||+||+|-.++
T Consensus       287 ~~~~~~~~~~feLf~QG------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~  344 (346)
T PF12043_consen  287 SSSSKESSHPFELFVQG------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS  344 (346)
T ss_pred             cccccccCCceeeeecc------cccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence            44555567778888763      23444899999999999999999999999999999997764

This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	292
1s31_A	273	Crystal Structure Analysis Of The Human Tub Protein		7e-51
1c8z_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Leng		2e-50
1i7e_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Boun		4e-50
2fim_A	276	Structure Of The C-Terminal Domain Of Human Tubby-L		3e-46
3c5n_A	246	Structure Of Human Tulp1 In Complex With Ip3 Length		2e-43

>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273

Iteration: 1
 Score =  197 bits (500), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 169/302 (55%), Gaps = 56/302 (18%)
Query: 1   MGAFVLQPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGK--FLLAARKCR 52
           +  F L+P P+G  ++C I R++         TY+L+L       +DGK  FLLA RK +
Sbjct: 18  LEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHL-----DREDGKKVFLLAGRKRK 72
Query: 53  RPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDG--HPPNAEARVTKCRSTRQ 110
           +   ++Y+IS++  D+S+G  +YIG+LRSN +GTKFT+YD   +P  A +   +  + RQ
Sbjct: 73  KSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQ 132
Query: 111 VNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFH 170
                           +A + YE NVLG +GPR+M  +   +P  ++    V+      H
Sbjct: 133 ---------------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRPRNEH 174
Query: 171 HSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVAS 230
            + L                  +QN   E ++ L+NK P W++  Q + LNF+GRVT AS
Sbjct: 175 ETLL----------------ARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQAS 218
Query: 231 VKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIA 290
           VKNFQ++        G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+A
Sbjct: 219 VKNFQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLA 271
Query: 291 CE 292
           CE
Sbjct: 272 CE 273

>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265

Iteration: 1
 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 112/299 (37%), Positives = 167/299 (55%), Gaps = 56/299 (18%)
Query: 4   FVLQPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGK--FLLAARKCRRPT 55
           F L+P P+G  ++C I R++         TY+L+L       +DGK  FLLA RK ++  
Sbjct: 13  FALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHL-----DREDGKKVFLLAGRKRKKSK 67
Query: 56  CTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDG--HPPNAEARVTKCRSTRQVNM 113
            ++Y+IS++  D+S+G  +YIG+LRSN +GTKFT+YD   +P  A +   +  + RQ   
Sbjct: 68  TSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQ--- 124
Query: 114 KQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSG 173
                        +A + YE NVLG +GPR+M  +   +P  ++    V       H + 
Sbjct: 125 ------------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRPRNEHETL 169
Query: 174 LDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKN 233
           L                  +QN   E ++ L+NK P W++  Q + LNF+GRVT ASVKN
Sbjct: 170 L----------------ARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKN 213
Query: 234 FQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           FQ++        G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 214 FQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265

>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265

Iteration: 1
 Score =  194 bits (494), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 111/299 (37%), Positives = 167/299 (55%), Gaps = 56/299 (18%)
Query: 4   FVLQPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGK--FLLAARKCRRPT 55
           F L+P P+G  ++C I R++         TY+L+L       +DGK  FLLA RK ++  
Sbjct: 13  FALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHL-----DREDGKKVFLLAGRKRKKSK 67
Query: 56  CTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDG--HPPNAEARVTKCRSTRQVNM 113
            ++Y+IS++  D+S+G  +YIG+LRSN +GTKFT+YD   +P  A +   +  + RQ   
Sbjct: 68  TSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQ--- 124
Query: 114 KQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSG 173
                        +A + YE NVLG +GPR+M  +   +P  ++    V       H + 
Sbjct: 125 ------------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRPRNEHETL 169
Query: 174 LDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKN 233
           L                  +QN   E ++ L+NK P W++  + + LNF+GRVT ASVKN
Sbjct: 170 L----------------ARWQNKNTESIIELQNKTPVWNDDTESYVLNFHGRVTQASVKN 213
Query: 234 FQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
           FQ++        G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 214 FQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265

>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276

Iteration: 1
 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 155/295 (52%), Gaps = 52/295 (17%)
Query: 4   FVLQPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGKFLLAARKCRRPTCT 57
           FVL+P P+G  ++C + R++         +Y+L+L   +       FLLA RK +R    
Sbjct: 28  FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKV-----FLLAGRKRKRSKTA 82
Query: 58  DYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVS 117
           +Y+IS++  ++S+G   +IG+LRSN LG +FT++D          T   S RQ       
Sbjct: 83  NYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQ------- 135
Query: 118 PKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSF 177
                    +A + YE NVLG RGPRRM  +   IP  S E   V P +      GL   
Sbjct: 136 --------ELAAVIYETNVLGFRGPRRMTVI---IPGMSAENERV-PIRPRNASDGL--- 180
Query: 178 PSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLV 237
                          +QN   E L+ L NK P W++    + LNF GRVT ASVKNFQ+V
Sbjct: 181 ------------LVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIV 228
Query: 238 ASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
            +        + + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD K+ACE
Sbjct: 229 HA-------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276

>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246

Iteration: 1
 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 150/289 (51%), Gaps = 52/289 (17%)
Query: 4   FVLQPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGKFLLAARKCRRPTCT 57
           FVL+P P+G  ++C + R++         +Y+L+L   +       FLLA RK +R    
Sbjct: 4   FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKV-----FLLAGRKRKRSKTA 58
Query: 58  DYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVS 117
           +Y+IS++  ++S+G   +IG+LRSN LG +FT++D          T   S RQ       
Sbjct: 59  NYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQ------- 111
Query: 118 PKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSF 177
                    +A + YE NVLG RGPRRM  +   IP  S E   V P +      GL   
Sbjct: 112 --------ELAAVIYETNVLGFRGPRRMTVI---IPGMSAENERV-PIRPRNASDGL--- 156
Query: 178 PSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLV 237
                          +QN   E L+ L NK P W++    + LNF GRVT ASVKNFQ+V
Sbjct: 157 ------------LVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIV 204
Query: 238 ASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 286
            +        + + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD
Sbjct: 205 HA-------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	292
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	4e-96
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	3e-93
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score =  283 bits (725), Expect = 4e-96
 Identities = 103/293 (35%), Positives = 150/293 (51%), Gaps = 42/293 (14%)

Query: 1   MGAFVLQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGK-FLLAARKCRRPTCTDY 59
              FVL+P P+G  ++C + R++      +Y       + + K FLLA RK +R    +Y
Sbjct: 25  PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANY 84

Query: 60  IISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPK 119
           +IS++  ++S+G   +IG+LRSN LG +FT++D                     +  S  
Sbjct: 85  LISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNP---------------QRGYSTN 129

Query: 120 LLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPS 179
           + +    +A + YE NVLG RGPRRM  ++   P  S E   V           L     
Sbjct: 130 VASLRQELAAVIYETNVLGFRGPRRMTVII---PGMSAENERVPIRPRNASDGLL----- 181

Query: 180 IPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS 239
                        +QN   E L+ L NK P W++    + LNF GRVT ASVKNFQ+V +
Sbjct: 182 -----------VRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA 230

Query: 240 LENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
                   + + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD K+ACE
Sbjct: 231 -------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score =  275 bits (704), Expect = 3e-93
 Identities = 99/285 (34%), Positives = 145/285 (50%), Gaps = 42/285 (14%)

Query: 3   AFVLQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGK-FLLAARKCRRPTCTDYII 61
            FVL+P P+G  ++C + R++      +Y       + + K FLLA RK +R    +Y+I
Sbjct: 3   EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLI 62

Query: 62  SLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLL 121
           S++  ++S+G   +IG+LRSN LG +FT++D                     +  S  + 
Sbjct: 63  SIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNP---------------QRGYSTNVA 107

Query: 122 AGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIP 181
           +    +A + YE NVLG RGPRRM  ++   P  S E   V           L       
Sbjct: 108 SLRQELAAVIYETNVLGFRGPRRMTVII---PGMSAENERVPIRPRNASDGLL------- 157

Query: 182 FFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLE 241
                      +QN   E L+ L NK P W++    + LNF GRVT ASVKNFQ+V +  
Sbjct: 158 ---------VRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA-- 206

Query: 242 NGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 286
                 + + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD
Sbjct: 207 -----DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 47/305 (15%), Positives = 80/305 (26%), Gaps = 98/305 (32%)

Query: 38  SNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTY----IGRLRSN--FLGTKFTIY 91
           S ++   ++ ++     + T  +         K            LR N  FL +     
Sbjct: 47  SKEEIDHIIMSKD--AVSGTLRLFWTLLS---KQEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 92  DGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHIS---------YEL----NVL- 137
              P        + R  R  N  QV  K     Y+V+ +           EL    NVL 
Sbjct: 102 QRQPSMMTRMYIEQRD-RLYNDNQVFAK-----YNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 138 -GSRGPRRMQC-----VMDAIPASSIE---PGGV---------------APTQTEFHH-- 171
            G  G            +D   +  ++      +                  Q   +   
Sbjct: 156 DGVLG-----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 172 ----SGLDSFPSIPFFRSKSIRAE--NFQNDQ--KEGLLVLRNKAPRWHEQLQCWCLN-F 222
               S  D   +I   R  SI+AE       +  +  LLVL N     +        N F
Sbjct: 211 PNWTSRSDHSSNIKL-RIHSIQAELRRLLKSKPYENCLLVLLNV---QNA----KAWNAF 262

Query: 223 NGRVTVASVKNFQLV----ASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAF 278
           N    +       L+      + + ++     ++ L    +     T D           
Sbjct: 263 NLSCKI-------LLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDE-----VKSLL 307

Query: 279 AICLS 283
              L 
Sbjct: 308 LKYLD 312

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	292
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	100.0
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	100.0

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=100.00  E-value=3.7e-90  Score=640.81  Aligned_cols=246  Identities=41%  Similarity=0.751  Sum_probs=188.3

Q ss_pred             CcccccCCCCCCceEEEEEEEeccC------CeEEEEeecccCCCCCCeEEEEEEecCCCCcceEEEEecCCCCCCCCcc
Q 022792            1 MGAFVLQPGPRGSLLQCYIKRNRSS------QTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSST   74 (292)
Q Consensus         1 m~~fL~~P~P~~~~iqC~I~R~k~~------~~Y~Lyl~~~~~~~~~~kfLLaArKr~~~~tsnYiIS~~~~dlsr~s~~   74 (292)
                      |++||+||+|+++++||+|+|+|+|      ++|+||++     .++++|||||||+++++|+||+||+|++|++|++++
T Consensus        25 ~~~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~   99 (276)
T 2fim_A           25 PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGEN   99 (276)
T ss_dssp             CTTGGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------C
T ss_pred             HHHHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCce
Confidence            7899999999999999999999998      69999995     467899999999999999999999999999999999


Q ss_pred             eeEEeeeceeecEEEEecCCCCCCccccccccccccccccccCccccCccEeEEEEEEeccccCCCCCceeEEEeccCCC
Q 022792           75 YIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPA  154 (292)
Q Consensus        75 yvGKLRSNflGT~f~iyD~G~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~nvlg~rgPRkM~v~ip~ip~  154 (292)
                      |||||||||+||+|+|||+|.+++.+               .+|+++.+|+|||+|.||+|++|++|||+|+|+||.+. 
T Consensus       100 yvGKLrSNflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~-  163 (276)
T 2fim_A          100 FIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS-  163 (276)
T ss_dssp             EEEEEEECSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEEEEEEC---------CCEEEEEECBC-
T ss_pred             EEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc-
Confidence            99999999999999999999543321               24556678899999999999999999999999998642 


Q ss_pred             cccCCCCCCCCccccccCCCCCCCCccccccccccccccccccccceEEeecCCCccccCcccEEeecCCeeecccccee
Q 022792          155 SSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNF  234 (292)
Q Consensus       155 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~~SvKNF  234 (292)
                         +.++..|.+    +...           .+..+..+.+...+++++|+||+|+|||++|+|||||+||||+||||||
T Consensus       164 ---~~~~~~~~~----p~~~-----------~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSvKNF  225 (276)
T 2fim_A          164 ---AENERVPIR----PRNA-----------SDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNF  225 (276)
T ss_dssp             ---TTSCBCCCC----CSST-----------TCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSCCTTCE
T ss_pred             ---cCCCEeccc----CCCc-----------ccccchhhhccCCcceEeeeccCCcccccCCEEEEecCCeeeccccceE
Confidence               223322221    1110           0111111223455789999999999999999999999999999999999


Q ss_pred             EEEecccCCCCCCCCCeEEEEEeeeCCCeEEEEccCCCCHHHHHHHHHHcCccccccC
Q 022792          235 QLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE  292 (292)
Q Consensus       235 qLv~~~~~~~~~~~~~~~vlqfGk~~~~~f~lD~~~PlS~~QAFaialss~d~k~aCe  292 (292)
                      |||++       ++++.||||||||++|+|+|||+|||||||||||||||||+|+|||
T Consensus       226 QLv~~-------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          226 QIVHA-------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             EEECT-------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             EEEec-------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            99987       3678999999999999999999999999999999999999999998

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A

Probab=100.00  E-value=1.3e-87  Score=615.07  Aligned_cols=240  Identities=40%  Similarity=0.731  Sum_probs=193.7

Q ss_pred             CcccccCCCCCCceEEEEEEEeccC------CeEEEEeecccCCCCCCeEEEEEEecCCCCcceEEEEecCCCCCCCCcc
Q 022792            1 MGAFVLQPGPRGSLLQCYIKRNRSS------QTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSST   74 (292)
Q Consensus         1 m~~fL~~P~P~~~~iqC~I~R~k~~------~~Y~Lyl~~~~~~~~~~kfLLaArKr~~~~tsnYiIS~~~~dlsr~s~~   74 (292)
                      |++||+||+|++++|||+|+|||+|      ++||||++     .++++|||||||+++++||||+||+|++|++|++++
T Consensus         1 ~~~fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~   75 (246)
T 3c5n_A            1 PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGEN   75 (246)
T ss_dssp             CTTGGGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------C
T ss_pred             ChhHcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCce
Confidence            7899999999999999999999998      68999985     456789999999999999999999999999999999


Q ss_pred             eeEEeeeceeecEEEEecCCCCCCccccccccccccccccccCccccCccEeEEEEEEeccccCCCCCceeEEEeccCCC
Q 022792           75 YIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPA  154 (292)
Q Consensus        75 yvGKLRSNflGT~f~iyD~G~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~nvlg~rgPRkM~v~ip~ip~  154 (292)
                      |||||||||+||+|+|||+|.+++.+               .+|+++.+|+|||+|.||+|++|++|||+|+|+||.+. 
T Consensus        76 yvGKLrsNf~Gt~F~iyD~g~~p~~~---------------~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~~-  139 (246)
T 3c5n_A           76 FIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS-  139 (246)
T ss_dssp             EEEEEEECSSSSEEEEECSCBCGGGC---------------TTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECBC-
T ss_pred             EEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc-
Confidence            99999999999999999999544321               24556678899999999999999999999999998642 


Q ss_pred             cccCCCCCCCCccccccCCCCCCCCccccccccccccccccccccceEEeecCCCccccCcccEEeecCCeeecccccee
Q 022792          155 SSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNF  234 (292)
Q Consensus       155 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~~SvKNF  234 (292)
                         +.++..|.+    +...           .+..+..+.+...+++++|+||+|+|||++|+|||||+||||+||||||
T Consensus       140 ---~~~~~~~~~----p~~~-----------~~~~~~~~~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aSvKNF  201 (246)
T 3c5n_A          140 ---AENERVPIR----PRNA-----------SDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNF  201 (246)
T ss_dssp             ---TTSCBCCCC----CSST-----------TSSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBCCTTCE
T ss_pred             ---cCCCEeecc----CCCc-----------cccchhhhhccCCcceEEEeccCCcccccCCEEEEecCCeeeccccceE
Confidence               223323221    1110           0111111223455789999999999999999999999999999999999


Q ss_pred             EEEecccCCCCCCCCCeEEEEEeeeCCCeEEEEccCCCCHHHHHHHHHHcCc
Q 022792          235 QLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD  286 (292)
Q Consensus       235 qLv~~~~~~~~~~~~~~~vlqfGk~~~~~f~lD~~~PlS~~QAFaialss~d  286 (292)
                      |||+++       +++.||||||||++|+|+|||+|||||||||||||||||
T Consensus       202 qLv~~~-------~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD  246 (246)
T 3c5n_A          202 QIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD  246 (246)
T ss_dssp             EEEBTT-------BTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred             EEEecC-------CCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence            999873       678999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	292
d1c8za_	265	d.23.1.1 (A:) Transcriptional factor tubby, C-term	1e-104

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  303 bits (776), Expect = e-104
 Identities = 100/295 (33%), Positives = 152/295 (51%), Gaps = 42/295 (14%)

Query: 1   MGAFVLQPGPRGSLLQCYIKRNRSSQT---YYLYLGLNQSSNDDGKFLLAARKCRRPTCT 57
           +  F L+P P+G  ++C I R++       +  Y       +    FLLA RK ++   +
Sbjct: 10  LEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTS 69

Query: 58  DYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVS 117
           +Y+IS++  D+S+G  +YIG+LRSN +GTKFT+YD      +A  +   S          
Sbjct: 70  NYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT-------- 121

Query: 118 PKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSF 177
                    +A + YE NVLG +GPR+M  ++  +             + E         
Sbjct: 122 -----LRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHET-------- 168

Query: 178 PSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLV 237
                          +QN   E ++ L+NK P W++  Q + LNF+GRVT ASVKNFQ++
Sbjct: 169 -----------LLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQII 217

Query: 238 ASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 292
                     + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 218 HG-------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	292
d1c8za_	265	Transcriptional factor tubby, C-terminal domain {M	100.0

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-85  Score=603.20  Aligned_cols=250  Identities=40%  Similarity=0.744  Sum_probs=208.8

Q ss_pred             CcccccCCCCCCceEEEEEEEeccCC------eEEEEeecccCCCCCCeEEEEEEecCCCCcceEEEEecCCCCCCCCcc
Q 022792            1 MGAFVLQPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSST   74 (292)
Q Consensus         1 m~~fL~~P~P~~~~iqC~I~R~k~~~------~Y~Lyl~~~~~~~~~~kfLLaArKr~~~~tsnYiIS~~~~dlsr~s~~   74 (292)
                      |+.||+||+|+|++|||+|+|+|+|.      +|+|||+..   .+.++|||||||+++++++|||||++++|+||++++
T Consensus        10 ~~~Fl~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~---~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~   86 (265)
T d1c8za_          10 LEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDRE---DGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDS   86 (265)
T ss_dssp             HHHHHHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECT---TSCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCC
T ss_pred             HHHHhcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccC---CCceeEEEEEeeecCCCcceEEEEccHHHhcccccc
Confidence            57899999999999999999999874      688888632   234579999999999999999999999999999999


Q ss_pred             eeEEeeeceeecEEEEecCCCCCCccccccccccccccccccCccccCccEeEEEEEEeccccCCCCCceeEEEeccCCC
Q 022792           75 YIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPA  154 (292)
Q Consensus        75 yvGKLRSNflGT~f~iyD~G~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~nvlg~rgPRkM~v~ip~ip~  154 (292)
                      |||||||||+||+|+|||+|.+++.++..             +....+.|+|||+|.||+|+||++|||+|+|+||.++.
T Consensus        87 yvGKlrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~  153 (265)
T d1c8za_          87 YIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNM  153 (265)
T ss_dssp             CSEEEEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCT
T ss_pred             eeEEeeccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhccCCCceeEEEecCCCc
Confidence            99999999999999999999665543211             11223457899999999999999999999999998753


Q ss_pred             cccCCCCCCCCccccccCCCCCCCCccccccccccccccccccccceEEeecCCCccccCcccEEeecCCeeecccccee
Q 022792          155 SSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNF  234 (292)
Q Consensus       155 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~~SvKNF  234 (292)
                      +....        .+.+..           +.+..+..+.+...+++++|+||+|+||+++++|+|||+|||++||||||
T Consensus       154 ~~~~~--------~~~p~~-----------~~~~~~~~~~~~~~~~~~~l~~k~P~~n~~~~~~~LnF~gRv~~~SvKNF  214 (265)
T d1c8za_         154 VHERV--------CIRPRN-----------EHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNF  214 (265)
T ss_dssp             TSCBC--------CCCCSS-----------TTSSHHHHHHTTCCSSEEEEEECCCEEETTTTEEEEEETTEEEECBTTEE
T ss_pred             ccccc--------ccCCCC-----------cchhhhHHhhccCcccceEEecCCCeeeccCCEEEeccCCEEeccccceE
Confidence            21110        111111           01112222234566899999999999999999999999999999999999


Q ss_pred             EEEecccCCCCCCCCCeEEEEEeeeCCCeEEEEccCCCCHHHHHHHHHHcCccccccC
Q 022792          235 QLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE  292 (292)
Q Consensus       235 qLv~~~~~~~~~~~~~~~vlqfGk~~~~~f~lD~~~PlS~~QAFaialss~d~k~aCe  292 (292)
                      |||++       ++++++|||||||++|+|+|||+|||||+||||||||+||+|+|||
T Consensus       215 ql~~~-------~~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         215 QIIHG-------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             EEECT-------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             EEEeC-------CCCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            99986       3678999999999999999999999999999999999999999998